Citrus Sinensis ID: 014742
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 419 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XIA9 | 665 | Long chain acyl-CoA synth | yes | no | 0.980 | 0.618 | 0.643 | 1e-162 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.990 | 0.624 | 0.529 | 1e-132 | |
| Q9T0A0 | 666 | Long chain acyl-CoA synth | no | no | 0.995 | 0.626 | 0.523 | 1e-130 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.990 | 0.623 | 0.526 | 1e-129 | |
| O22898 | 660 | Long chain acyl-CoA synth | no | no | 0.995 | 0.631 | 0.456 | 1e-109 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.859 | 0.514 | 0.393 | 2e-68 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.837 | 0.500 | 0.407 | 7e-68 | |
| Q1ZXQ4 | 673 | Fatty acyl-CoA synthetase | yes | no | 0.861 | 0.536 | 0.335 | 3e-57 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | no | no | 0.832 | 0.523 | 0.356 | 7e-57 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | yes | no | 0.832 | 0.5 | 0.342 | 1e-56 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/412 (64%), Positives = 320/412 (77%), Gaps = 1/412 (0%)
Query: 9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
VEE RPA PS GPVYRC YAKDGLL+ P ++SPWQFF ++ K+ PN QMLG R +
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
YVPLYD+LG NAVEFIINHAEVS+ FVQE + SILSC C LKTIVSF VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
+EA+ VS FSW EF +G LD LP K+KT+I TIMYTSGTTGEPKGV+L N AI
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
+VLS+D+M VT + C D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
+Q LKPT+F GVPRVYD++Y GI KIS+ G + KKLF+FAYNYKLGNM+KG Q +A+P
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370
Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
LD L+F KI+EA GGR +LSGAAPLP HVEEFLR+ + L+QGYG+ E
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTE 422
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/417 (52%), Positives = 300/417 (71%), Gaps = 2/417 (0%)
Query: 5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
Y V+VE+ + DG PS GPVYR IYAKDG E P L S W F S ++ PNN MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
R++ DGK G YVW TY+EV++ I+ G+++R+ GV GD+CGIYG+N PEWII+MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
+ + VPLYDTLGA A+EFII HAEVS+AF +ENKI +L P+ YLK IVSF V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
+++Q+ EAE ++ +SW++FL+LG ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
++I+ + V ++ + + +D Y S+LPLAHI+D++IE CI++ SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
L+EDI LKPT+F VPRV +RIYTG+ K+S GG + KKLF FA+ YK NM+KG P
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365
Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+A+P+ D +VF K++E GG ++ +LSGAAPL H+E FLRV + A + QGYG+ E
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTE 422
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/418 (52%), Positives = 298/418 (71%), Gaps = 1/418 (0%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+ Y +VEE + +DG+PS GPVYR I+AKDG + G++S W F S ++ PNN ML
Sbjct: 5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ DGK G YVW TYQEVYD ++ G+++RS GV +CGIYG+N PEWII+MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
N+ + VPLYDTLGA+AVEFII+H+EVSI FV+E KI + P Y+KT+VSF
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
VS QK+EAE G+ ++W+EFL+LG +LP KKK++I TIMYTSGTTG+PKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
N++IV + V ++ + + +D Y S+LPLAHI+D++IE I G +IGFWRGDV
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
+ L+ED+ ELKPT+F VPRV DR+Y+G+ K+S GG L K +F+ A++YK G MKKG
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+A+PL D LVFSK+++ GG ++ +LSGAAPL HVE FLRV + + QGYG+ E
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE 422
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 292/416 (70%), Gaps = 1/416 (0%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ +VE A+ A DG PS GPVYR +A++G G++S W F + ++ PNN+MLG
Sbjct: 7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++S+GK G YVW TY+EVYD I+ G+++RS G+ G++CGIYG NC EWII+MEACN+
Sbjct: 67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA AVEFII+HAEVSIAFV+E KIP + P Y+KT+VSF V
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE+LG+ SW+EFL+LG ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV V SE+D Y S+LPLAH++D+ IE I G SIGFWRGDV+
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
L+ED+ ELKP++F VPRV DR+YTG+ K+S GG KK+F+ A++YK GNMKKG
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366
Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
A+P D LVF+K+++ GG ++ +LSGAAPL H+E FLRV + + QGYG+ E
Sbjct: 367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/418 (45%), Positives = 267/418 (63%), Gaps = 1/418 (0%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+++ KVEE DGKPS GPVYR + ++ G + + + W F S ++ P+N ML
Sbjct: 2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ D KVGPY+W TY+EVY+ ++ GSA+R+ G PG R GIYG NCP+WIIAMEAC
Sbjct: 62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
+ + VPLYDTLG+ AV++I+ HAE+ FVQ+ KI +L +C LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
VS +A E+GV +SW +FL +G E P K NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
+QA+ V+ +D + +D Y SFLPLAHI D++ E + KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
L +DIQELKPT +GVPRV++RI+ GI + + +F Y +KL + +G
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+KA+P+ D + F KIR+ GGR++ ++SG APL +EEFLRVT + QGYG+ E
Sbjct: 362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTE 419
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 209/374 (55%), Gaps = 14/374 (3%)
Query: 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
F + + N+ LG R SDG +G Y W+TY E GS + GVN GD G+Y
Sbjct: 90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149
Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
N PEW++ AC + + VPLYDTLG +AV+F++NHA + F + +LS L
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209
Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
++ IV GV+ S+++ L G P K +I+TI Y
Sbjct: 210 EIP-SIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268
Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
TSGTTG PKGVVLT+ ++A V SV+ F + D Y S+LPLAHIY++ +
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
++ G ++GF++GDV LM+D L+PT+F VPR+Y+RIY GI++ + S G + K+LF
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381
Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
E AYN K + G + D LVF+KI+E GGR++ M SGA+PL V +FLR+
Sbjct: 382 EIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438
Query: 406 TSGAPLTQGYGMVE 419
G + +GYGM E
Sbjct: 439 CFGCSVREGYGMTE 452
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 204/361 (56%), Gaps = 10/361 (2%)
Query: 60 QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
+ LG R DG VG Y W+TY E A GS + G+ G GIY N PEW+I
Sbjct: 101 KYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVD 160
Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
AC+S + VPLYDTLG +AV+FI+NHA V F + S+LSCL +V
Sbjct: 161 HACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPSVRLVVVV 220
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGV 238
+ S + GV S+ L G + + P K +++TI YTSGTTG PKGV
Sbjct: 221 GGLIESLPSLPSSS-GVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTSGTTGTPKGV 279
Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
VLT+ ++A V D Y S+LPLAHIY++ + ++ G ++GF++
Sbjct: 280 VLTHANLIANVAGSSFS-----VKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQ 334
Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
GD L++D+ L+PT+FS VPR+Y+RIY GI N + + G L ++LF AYN K +
Sbjct: 335 GDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLN 394
Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMV 418
G A+P+ D LVF+KI++ GGR++ M SGA+PL V EFL+V G +T+GYGM
Sbjct: 395 G---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMT 451
Query: 419 E 419
E
Sbjct: 452 E 452
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 204/373 (54%), Gaps = 12/373 (3%)
Query: 52 SAKRIPNNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
S K+ + G RK S+G +G + W++Y + + G+ P + GI+
Sbjct: 72 SCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSK 131
Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC 170
N EW+I A Q+ V Y+TLG ++ ++ HAE+ +AF + L + +
Sbjct: 132 NRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKG 190
Query: 171 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCELPPKKKTNISTIM 226
LKTI+ F ++ A+ELGV+ ++++E ++ G PP T +STIM
Sbjct: 191 VKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIM 249
Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
YTSGTTG PKGV++T++ + + V +V V + D ++S+LP AH+ ++++
Sbjct: 250 YTSGTTGPPKGVMITHKNLTSVVCAVSDFIKVY-----DTDVHYSYLPYAHVLERVVILA 304
Query: 287 CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE 346
H G +IG + GD+ ++ +++ L PT+F GVPRV++RI T + +IS AL + LF
Sbjct: 305 AFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFN 364
Query: 347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT 406
AYN K +++ G +LD + FSKI++A GG+++ +LSG+APL E FLRV
Sbjct: 365 GAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVV 424
Query: 407 SGAPLTQGYGMVE 419
+ QGYG E
Sbjct: 425 MCCCVLQGYGASE 437
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 213/367 (58%), Gaps = 18/367 (4%)
Query: 58 NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
++ LG R++ +DGK G Y W++Y++ A GSA+ G+N GDR GI+ N PEW+
Sbjct: 67 DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126
Query: 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
++ A + ++ V LY TLGANA+E+++NH+E+S+ + + ILS +P +KT
Sbjct: 127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTT--IKT 183
Query: 177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTT 232
IVS+ + ++ K + V + +F +LG + E+P + ++ T++YTSG+T
Sbjct: 184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241
Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
G PKGV+LT+ +V+EV + F G + ED + S+LPLAH +++ + + + G
Sbjct: 242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297
Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
IGF+ G + L DIQ L+PT G PRV+ R++ + +++ L K LF + N K
Sbjct: 298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357
Query: 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
++ G P+ D LVFSK ++ GGR++ +LSG+APL + EFLR P+
Sbjct: 358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413
Query: 413 QGYGMVE 419
GYG+ E
Sbjct: 414 SGYGLSE 420
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 213/371 (57%), Gaps = 22/371 (5%)
Query: 58 NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEW 115
N LG RK PY WL+Y++V D + GSA+ +G +P GI+ N PEW
Sbjct: 105 NGPCLGSRKPDQ----PYEWLSYKQVEDLSECIGSALLQKGFQASPDQFIGIFAQNRPEW 160
Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLY 173
+I +AC + ++ VPLYDTLGA+A+ +I+N AE+S+ F + + IL S +
Sbjct: 161 VIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKARILLESVENKLTPG 220
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTT 232
LK IV + S ++ ++ GV S + LG + P P + +++ I +TSGTT
Sbjct: 221 LKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRKPKPPEPDDLAVICFTSGTT 280
Query: 233 GEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI 288
G PKG ++T++ +V++ V + ++ V+ D + SFLPLAH+Y+Q+++ +
Sbjct: 281 GNPKGAMITHKNVVSDCSAFVKATEKALVLNA-----SDIHISFLPLAHMYEQLLQCVML 335
Query: 289 HKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA 348
G IGF++GD+R LM+D++ L+PT+F VPR+ +R++ I + ++ + + L +FA
Sbjct: 336 CHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQANT--TVKRWLLDFA 393
Query: 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG 408
K ++ G+ +N + + D L+F KI+ + GG+++ M++GAAP+ V FLR G
Sbjct: 394 SKRKEAELRSGIIRNNS--VWDKLIFHKIQSSLGGKVRLMVTGAAPVSATVLTFLRAALG 451
Query: 409 APLTQGYGMVE 419
+GYG E
Sbjct: 452 CQFYEGYGQTE 462
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 419 | ||||||
| 224103487 | 658 | predicted protein [Populus trichocarpa] | 0.990 | 0.630 | 0.768 | 0.0 | |
| 449455210 | 661 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.633 | 0.754 | 0.0 | |
| 225428594 | 659 | PREDICTED: long chain acyl-CoA synthetas | 0.990 | 0.629 | 0.739 | 0.0 | |
| 449474962 | 661 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.633 | 0.75 | 0.0 | |
| 356544492 | 656 | PREDICTED: long chain acyl-CoA synthetas | 0.997 | 0.637 | 0.732 | 0.0 | |
| 255556171 | 660 | acyl CoA synthetase, putative [Ricinus c | 0.995 | 0.631 | 0.733 | 0.0 | |
| 356541119 | 656 | PREDICTED: long chain acyl-CoA synthetas | 0.997 | 0.637 | 0.725 | 0.0 | |
| 356523415 | 660 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.634 | 0.718 | 0.0 | |
| 356575070 | 660 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.634 | 0.715 | 1e-180 | |
| 115485907 | 661 | Os11g0558300 [Oryza sativa Japonica Grou | 1.0 | 0.633 | 0.649 | 1e-168 |
| >gi|224103487|ref|XP_002313075.1| predicted protein [Populus trichocarpa] gi|222849483|gb|EEE87030.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/415 (76%), Positives = 365/415 (87%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ VKVEE+RPA+DGKPS GPVYR IYAKDGL++ PAGLESPWQFF DSA + P N+MLG
Sbjct: 3 FIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKMLGR 62
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R+V D KVGPYVWLTY+EVYD+A+R GSAMR RGVNPGDRCGIYGSNCPEWI AMEAC+S
Sbjct: 63 RQVIDSKVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAMEACDS 122
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
QAITYVPLYDTLG NAVEFIINHAEVSIAFVQENK+ SILSCLP+C LKTIVSF +S
Sbjct: 123 QAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGKIS 182
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
QKKEA+ELGVSCFSWEEF QLG+LDCELPPK KT++ TIMYTSGTTGEPKGV+LTN A
Sbjct: 183 DMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTNGA 242
Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
+VAEVLSVDQ+ +T +V +EED+YFSFLPLAH+YDQ+IET+CI+KG SIGFW+GDVRYL
Sbjct: 243 LVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDVRYL 302
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
MEDIQELKP++F GVPRVYDRIYTG K+S+GG L KKLF+FAYNYKLG ++KG PQ K
Sbjct: 303 MEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKGFPQEK 362
Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
AAPLLD LVF K ++A GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYG+ E
Sbjct: 363 AAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEEFLRVTSCSTLSQGYGLTE 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455210|ref|XP_004145346.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/420 (75%), Positives = 360/420 (85%), Gaps = 1/420 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
MS +YTV VE P + G+PS GPVYR IYAKDGLL+ P L+SPWQFF DS KR P N
Sbjct: 1 MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60
Query: 61 MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
MLG R+ + D K G YVWLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61 MLGRRQTNGDSKAGSYVWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120
Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
F NVSS KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360
Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+ Q KAAPLLD LVF KI+EAFGGR++ LSGAAPLP HVEEFLRVTS A L+QGYG+ E
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428594|ref|XP_002281151.1| PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera] gi|297741400|emb|CBI32531.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 362/415 (87%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
YTVKV ++ PA + +PS GPVYRCIYA++GLLE P G+ESPW+FF DS +R P NQMLG
Sbjct: 4 YTVKVADSIPATEERPSAGPVYRCIYAENGLLEVPKGMESPWEFFSDSVERNPKNQMLGR 63
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++ + K GPYVWLTY+E YDAA+R GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS
Sbjct: 64 RQIINSKAGPYVWLTYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 123
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
QAI YVPLYD+LGANAVEFIINHAEVSIAFVQE+KIP++L+CLP+C YLKTI+SF +S
Sbjct: 124 QAIPYVPLYDSLGANAVEFIINHAEVSIAFVQESKIPAMLTCLPKCTSYLKTIISFGKIS 183
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
SSQK+EAEELGVSCFSWEEF LG+LDCELPPK+KT+I TIMYTSGTTGEPKGVVL+N+A
Sbjct: 184 SSQKEEAEELGVSCFSWEEFALLGSLDCELPPKQKTDICTIMYTSGTTGEPKGVVLSNEA 243
Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
I+AEVLS DQ+ + T KV +EEDTYFSFLPLAH++DQI+ET+CI+KG SIGFW DVRYL
Sbjct: 244 IMAEVLSTDQLLLETDKVATEEDTYFSFLPLAHVFDQIMETYCIYKGSSIGFWGADVRYL 303
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
MEDIQELKPT+F GVPRVY+RIY G KISSGGAL K LF++AYNYKL N++KG+ Q++
Sbjct: 304 MEDIQELKPTIFCGVPRVYERIYGGAIAKISSGGALRKALFQYAYNYKLRNLEKGLRQDE 363
Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
AAP LD L+F KI++ FGGR++ + SGAAPL HVEEFLRVTS + L+QGYG+ E
Sbjct: 364 AAPRLDRLIFDKIKQGFGGRVRLLFSGAAPLSRHVEEFLRVTSCSVLSQGYGLTE 418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449474962|ref|XP_004154333.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/420 (75%), Positives = 358/420 (85%), Gaps = 1/420 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
MS +YTV VE P + G+PS GPVYR IYAKDGLL+ P L+SPWQFF DS KR P N
Sbjct: 1 MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60
Query: 61 MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
MLG R+ + D KV WLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61 MLGRRQTNGDSKVAAIRWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120
Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
F NVSS KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360
Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+ Q KAAPLLD LVF KI+EAFGGR++ LSGAAPLP HVEEFLRVTS A L+QGYG+ E
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544492|ref|XP_003540684.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/419 (73%), Positives = 355/419 (84%), Gaps = 1/419 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E YTVKVEEARPA KPS GPVYRCIYAKD L P+ ESPW+FF D+ R P+N
Sbjct: 1 MPEVYTVKVEEARPATHEKPSAGPVYRCIYAKDALTVLPSHFESPWEFFRDTTTRCPSNP 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSR VNPGDRCGIYGSNCPEWIIAME
Sbjct: 61 MLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ+NK PS+LSCL RC LKT+VSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCS-SLKTVVSF 179
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
NVS++QKKEAEELG SCFSWEEFLQLG +D +LP K KTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVII 239
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A + +VLS+DQ+ +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
VR+LMEDIQ LKPT+F VPRVYDR+Y GIS+KISSGGAL LF++AYNYKLG ++KG+
Sbjct: 300 VRFLMEDIQALKPTLFCAVPRVYDRVYAGISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYG+ E
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTE 418
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556171|ref|XP_002519120.1| acyl CoA synthetase, putative [Ricinus communis] gi|223541783|gb|EEF43331.1| acyl CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/421 (73%), Positives = 358/421 (85%), Gaps = 4/421 (0%)
Query: 1 MSETYTVKVEEARPAA-DGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNN 59
MS Y VKVEE+RPAA DGKPS GPV+R IYAKDGLLE A L+SPWQF DSA + PNN
Sbjct: 1 MSMEYLVKVEESRPAASDGKPSAGPVFRSIYAKDGLLEVSAELDSPWQFLSDSALKNPNN 60
Query: 60 QMLGGRKVSDGKV-GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118
+MLG R V+D KV GPYVWLTY+EVY+ AIR GSAMRSRG+NPGDRCGIYGSNCPEWI A
Sbjct: 61 RMLGRRLVTDSKVAGPYVWLTYKEVYETAIRIGSAMRSRGLNPGDRCGIYGSNCPEWITA 120
Query: 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178
MEAC S AIT+VPLYDTLG NAVEFI+NHAEVS+AFVQE+K+ SIL+CLP+C YLK+
Sbjct: 121 MEACKSHAITFVPLYDTLGPNAVEFIVNHAEVSLAFVQESKLSSILACLPKCSSYLKS-- 178
Query: 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
+F +VS+ QKKEAEELG SCFSWEEF QLG+LDCELP K K +I TIMYTSGTTGEPKGV
Sbjct: 179 NFGSVSAMQKKEAEELGASCFSWEEFCQLGSLDCELPAKHKGDICTIMYTSGTTGEPKGV 238
Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
+LTN AI+AEVLSVD + +T + +EED+YFSFLPLAH+YDQ+IET+CI KG SIGFWR
Sbjct: 239 LLTNGAIMAEVLSVDHLLFLTDRAATEEDSYFSFLPLAHVYDQVIETYCIQKGASIGFWR 298
Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
GDVR+L+ED Q LKP++F GVPRVYDRIYTG KISSGGAL KKLF+FAY+YKLGN++K
Sbjct: 299 GDVRFLLEDAQALKPSIFCGVPRVYDRIYTGTMQKISSGGALRKKLFDFAYSYKLGNLQK 358
Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMV 418
G+PQ +AAPLLD LVF K ++ GGR++ MLSGAAPLP HVEEFLRVTS + L+QGYG+
Sbjct: 359 GLPQAQAAPLLDRLVFEKTKQTLGGRVRIMLSGAAPLPKHVEEFLRVTSCSTLSQGYGLT 418
Query: 419 E 419
E
Sbjct: 419 E 419
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541119|ref|XP_003539030.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/419 (72%), Positives = 356/419 (84%), Gaps = 1/419 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E Y+VKVEEARPA KPS GPVYRCIYAKD L + P+ +SPWQFF D+ R P+N
Sbjct: 1 MPELYSVKVEEARPATHEKPSAGPVYRCIYAKDALTQLPSHFQSPWQFFRDTTTRCPSNP 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSRGVNPG RCGIYGSNCPEWIIAM+
Sbjct: 61 MLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQ 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ++KIPS+LSCL R LKTIVSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWS-SLKTIVSF 179
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
NVS++QKKEAEELG SCFSWEEFLQ+G +D +LPPKKKTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVII 239
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A + +VLS+DQ+ +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
V +LMEDI LKPT+F GVPRVYDR+Y IS+KISSGGAL LF++AYNYKLG ++KG+
Sbjct: 300 VGFLMEDILALKPTLFCGVPRVYDRVYACISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYG+ E
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTE 418
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523415|ref|XP_003530335.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/419 (71%), Positives = 351/419 (83%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E YTVKVEE RPA D KPS GPVYR IYAKDGLLE P+ ESPW FF DS KR PNN+
Sbjct: 1 MPEVYTVKVEEGRPATDAKPSAGPVYRSIYAKDGLLEVPSDFESPWDFFRDSVKRNPNNK 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ ++ KVG Y WLTYQ+VYDAA++ GSAMRSRGVNPGDRCGIYGSNCPEWII ME
Sbjct: 61 MLGRRQKTESKVGSYTWLTYQDVYDAALKMGSAMRSRGVNPGDRCGIYGSNCPEWIIVME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A +YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPSILSCL +C LKTIVSF
Sbjct: 121 ACNSCAASYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSILSCLAQCSSNLKTIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+VS++QKKEAEE G SCFSW EFLQLG LD +LP KKK +I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEEHGASCFSWGEFLQLGCLDWDLPSKKKNDICTIMYTSGTTGDPKGVVI 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A +AEVLSVD + ++T +V E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVVGEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
VR+L+ED+Q LKPT+F GVPRV+DRIY GI +K+SS G L LF+ AYNYKL +++KG+
Sbjct: 301 VRFLLEDVQALKPTIFCGVPRVFDRIYAGIKSKVSSAGGLQSTLFQCAYNYKLKSLEKGL 360
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYG+ E
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTE 419
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575070|ref|XP_003555665.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/419 (71%), Positives = 351/419 (83%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E YTVKVEE R A DGKPS GPVYR IYAKDGLLE P+ +SPW FF DS KR PNN
Sbjct: 1 MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPSDFKSPWDFFRDSVKRNPNNN 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ ++ K+G Y WLTYQ+VYDAA++ GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61 MLGRRQKTESKLGSYTWLTYQDVYDAAMKMGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A++YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPS+LSCL +C LKTIVSF
Sbjct: 121 ACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSVLSCLAQCSSNLKTIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+VS++QKKEAE G SCFSW EFLQLG LD +LP KKKT+I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWDLPSKKKTDICTIMYTSGTTGDPKGVVI 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A +AEVLSVD + ++T +V E+D YFSFLPLAH+YDQI+ET+CI KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFLPLAHVYDQIMETYCISKGSSIGFWQGD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
VR+L+EDIQELKPT+F GVPRV+DRIY GI +K+SS G L LF+ AYNYKL ++KG+
Sbjct: 301 VRFLLEDIQELKPTIFCGVPRVFDRIYAGIKSKVSSAGPLQSTLFQCAYNYKLKYLEKGL 360
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYG+ E
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTE 419
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115485907|ref|NP_001068097.1| Os11g0558300 [Oryza sativa Japonica Group] gi|77551497|gb|ABA94294.1| AMP-binding enzyme family protein, expressed [Oryza sativa Japonica Group] gi|113645319|dbj|BAF28460.1| Os11g0558300 [Oryza sativa Japonica Group] gi|215766667|dbj|BAG98895.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616147|gb|EEE52279.1| hypothetical protein OsJ_34263 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 272/419 (64%), Positives = 342/419 (81%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M ETYTVKV EA PAA GKPS GPVYR IY+KDGL++ P + SPW FF + K+ P N+
Sbjct: 1 MEETYTVKVGEATPAAGGKPSAGPVYRSIYSKDGLMKLPEDILSPWDFFSGAVKQYPKNK 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG RKVSDGK G YVWLTY+EVY I+ GSA+RS V PG CGIYGSNCPEW++AM+
Sbjct: 61 MLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPGGHCGIYGSNCPEWVMAMQ 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNSQ I YVPLYDTLGANAVEFI++HAE+SIAFVQE+KI S+LS + RC ++K IVSF
Sbjct: 121 ACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKIQSVLSVVKRCRAHIKAIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+V+S K+EAE+LGVSCFSWEEF +G + ELP K+K +I TIMYTSGTTG+PKGV++
Sbjct: 181 GDVTSELKREAEQLGVSCFSWEEFSSMGKQNYELPKKQKDDICTIMYTSGTTGDPKGVII 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
TN+A++A V++ + + VT KV +E+D+YFS+LPLAHI+DQ+I +CI KG SIGFW+ D
Sbjct: 241 TNRALIAGVMTTEHLLKVTDKVVAEDDSYFSYLPLAHIFDQVIGNYCISKGASIGFWQAD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
+RYLMED+Q +KPT+F GVPRVYDRIYTGI+ KI SGG ++K LF++AYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQMMKPTVFCGVPRVYDRIYTGINQKIQSGGMIAKSLFQYAYNYKLGNLRKGL 360
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
Q++A+P D +VFSKI+E GGR++ +LSGAAPLP HVEEF+RVTS + L QGYG+ E
Sbjct: 361 KQDEASPFFDKIVFSKIKEGLGGRIRLLLSGAAPLPRHVEEFMRVTSCSVLVQGYGLTE 419
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 419 | ||||||
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.980 | 0.618 | 0.643 | 3.9e-147 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.990 | 0.624 | 0.529 | 7.4e-121 | |
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.990 | 0.623 | 0.526 | 1.8e-119 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.990 | 0.623 | 0.526 | 4.7e-119 | |
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 0.995 | 0.631 | 0.456 | 4.9e-101 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.830 | 0.496 | 0.422 | 8.2e-67 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.859 | 0.514 | 0.395 | 1.1e-64 | |
| WB|WBGene00022037 | 719 | acs-13 [Caenorhabditis elegans | 0.849 | 0.495 | 0.395 | 1.4e-62 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.837 | 0.513 | 0.363 | 7.5e-57 | |
| DICTYBASE|DDB_G0269474 | 673 | fcsB "fatty acyl-CoA synthetas | 0.940 | 0.585 | 0.327 | 4.2e-56 |
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
Identities = 265/412 (64%), Positives = 320/412 (77%)
Query: 9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
VEE RPA PS GPVYRC YAKDGLL+ P ++SPWQFF ++ K+ PN QMLG R +
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
YVPLYD+LG NAVEFIINHAEVS+ FVQE + SILSC C LKTIVSF VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
+EA+ VS FSW EF +G LD LP K+KT+I TIMYTSGTTGEPKGV+L N AI
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
+VLS+D+M VT + C D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
+Q LKPT+F GVPRVYD++Y GI KIS+ G + KKLF+FAYNYKLGNM+KG Q +A+P
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370
Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
LD L+F KI+EA GGR +LSGAAPLP HVEEFLR+ + L+QGYG+ E
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTE 422
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 221/417 (52%), Positives = 300/417 (71%)
Query: 5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
Y V+VE+ + DG PS GPVYR IYAKDG E P L S W F S ++ PNN MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
R++ DGK G YVW TY+EV++ I+ G+++R+ GV GD+CGIYG+N PEWII+MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
+ + VPLYDTLGA A+EFII HAEVS+AF +ENKI +L P+ YLK IVSF V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
+++Q+ EAE ++ +SW++FL+LG ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
++I+ + V ++ + + +D Y S+LPLAHI+D++IE CI++ SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
L+EDI LKPT+F VPRV +RIYTG+ K+S GG + KKLF FA+ YK NM+KG P
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365
Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+A+P+ D +VF K++E GG ++ +LSGAAPL H+E FLRV + A + QGYG+ E
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTE 422
|
|
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 219/416 (52%), Positives = 297/416 (71%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
Y +VEE + +DG+PS GPVYR I+AKDG + G++S W F S ++ PNN MLG
Sbjct: 7 YIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++ DGK G YVW TYQEVYD ++ G+++RS GV +CGIYG+N PEWII+MEACN+
Sbjct: 67 REIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA+AVEFII+H+EVSI FV+E KI + P Y+KT+VSF VS
Sbjct: 127 HGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE G+ ++W+EFL+LG +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV + V ++ + + +D Y S+LPLAHI+D++IE I G +IGFWRGDV+
Sbjct: 247 SIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
L+ED+ ELKPT+F VPRV DR+Y+G+ K+S GG L K +F+ A++YK G MKKG
Sbjct: 307 LIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSHV 366
Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+A+PL D LVFSK+++ GG ++ +LSGAAPL HVE FLRV + + QGYG+ E
Sbjct: 367 EASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE 422
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 219/416 (52%), Positives = 292/416 (70%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ +VE A+ A DG PS GPVYR +A++G G++S W F + ++ PNN+MLG
Sbjct: 7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++S+GK G YVW TY+EVYD I+ G+++RS G+ G++CGIYG NC EWII+MEACN+
Sbjct: 67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA AVEFII+HAEVSIAFV+E KIP + P Y+KT+VSF V
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE+LG+ SW+EFL+LG ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV V SE+D Y S+LPLAH++D+ IE I G SIGFWRGDV+
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
L+ED+ ELKP++F VPRV DR+YTG+ K+S GG KK+F+ A++YK GNMKKG
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366
Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
A+P D LVF+K+++ GG ++ +LSGAAPL H+E FLRV + + QGYG+ E
Sbjct: 367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
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| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
Identities = 191/418 (45%), Positives = 267/418 (63%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+++ KVEE DGKPS GPVYR + ++ G + + + W F S ++ P+N ML
Sbjct: 2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ D KVGPY+W TY+EVY+ ++ GSA+R+ G PG R GIYG NCP+WIIAMEAC
Sbjct: 62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
+ + VPLYDTLG+ AV++I+ HAE+ FVQ+ KI +L +C LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
VS +A E+GV +SW +FL +G E P K NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
+QA+ V+ +D + +D Y SFLPLAHI D++ E + KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
L +DIQELKPT +GVPRV++RI+ GI + + +F Y +KL + +G
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+KA+P+ D + F KIR+ GGR++ ++SG APL +EEFLRVT + QGYG+ E
Sbjct: 362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTE 419
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| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 152/360 (42%), Positives = 209/360 (58%)
Query: 62 LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
LG R DG VG Y W+TY E A GS + G+ G GIY N PEW+I A
Sbjct: 103 LGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHA 162
Query: 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
C+S + VPLYDTLG +AV+FI+NHA V F + S+LSCL ++ +V
Sbjct: 163 CSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPS-VRLVVVVG 221
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE--LPPKKKTNISTIMYTSGTTGEPKGVV 239
+ S GV S+ L G + + PPK +++TI YTSGTTG PKGVV
Sbjct: 222 GLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPD-DVATICYTSGTTGTPKGVV 280
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
LT+ ++A V F V K S D Y S+LPLAHIY++ + ++ G ++GF++G
Sbjct: 281 LTHANLIANVAG--SSFSV--KFFSS-DVYISYLPLAHIYERANQILTVYFGVAVGFYQG 335
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
D L++D+ L+PT+FS VPR+Y+RIY GI N + + G L ++LF AYN K + G
Sbjct: 336 DNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLNG 395
Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
A+P+ D LVF+KI++ GGR++ M SGA+PL V EFL+V G +T+GYGM E
Sbjct: 396 ---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMTE 452
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| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 148/374 (39%), Positives = 211/374 (56%)
Query: 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
F + + N+ LG R SDG +G Y W+TY E GS + GVN GD G+Y
Sbjct: 90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149
Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
N PEW++ AC + + VPLYDTLG +AV+F++NHA + F + +LS L
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209
Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
++ IV GV+ S+++ L G P K +I+TI Y
Sbjct: 210 EIPS-IRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268
Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
TSGTTG PKGVVLT+ ++A V SV+ F + D Y S+LPLAHIY++ +
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
++ G ++GF++GDV LM+D L+PT+F VPR+Y+RIY GI++ + S G + K+LF
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381
Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
E AYN K + G + +A D LVF+KI+E GGR++ M SGA+PL V +FLR+
Sbjct: 382 EIAYNSKKQAIING--RTPSA-FWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438
Query: 406 TSGAPLTQGYGMVE 419
G + +GYGM E
Sbjct: 439 CFGCSVREGYGMTE 452
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| WB|WBGene00022037 acs-13 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 148/374 (39%), Positives = 218/374 (58%)
Query: 55 RIPNN-QMLGGR-KVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG--DRCGIYGS 110
R+ NN MLG R K SDG + PYVW +Y + + A A R GV G + GIY
Sbjct: 120 RLSNNGPMLGRRVKQSDGSI-PYVWESYNTILERADNVSVAFRELGVPTGNAENIGIYSK 178
Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPR 169
N EWII A + + VP+Y+TLG+ A FI+N AE+ I + +K +L +
Sbjct: 179 NRAEWIITEFATYNYSNVIVPIYETLGSEASIFILNQAEIKIVVCDDISKATGLLKFKEQ 238
Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG----TLDCELPPKKKTNISTI 225
C L T+V V+ K A LGV ++E+ ++G T +PP + +++TI
Sbjct: 239 CPS-LSTLVVMEPVTDELKTTASSLGVEVLTFEDLEKIGKNAKTRPAHIPPTPE-DLATI 296
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
YTSGTTG PKGV+LT+ ++A+ + +D F +G + D+ SFLPLAH+ +++IE+
Sbjct: 297 CYTSGTTGTPKGVMLTHANVIADGVCMD-FFKHSGIAAT--DSMISFLPLAHMLERVIES 353
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
C G +GF+RGD+R L EDI+ELKPT+ VPRV +R+Y + ++++ L K LF
Sbjct: 354 VCFCVGAKVGFYRGDIRVLAEDIKELKPTVVPVVPRVLNRLYDKVMSEVNKS-TLKKMLF 412
Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
+FA +YK +M +N D+LVF KIRE FGGR++ M++G+APL +V F+R
Sbjct: 413 DFAISYKARDMANFNIRNDG--FFDNLVFKKIREGFGGRVRLMITGSAPLSTNVLTFVRA 470
Query: 406 TSGAPLTQGYGMVE 419
G + +GYG E
Sbjct: 471 AMGCVVVEGYGQTE 484
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| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 134/369 (36%), Positives = 210/369 (56%)
Query: 58 NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG-DR-CGIYGSNCPEW 115
N LG RK + PY WLTY++V D A GS + +G P D+ GI+ N PEW
Sbjct: 90 NGNCLGYRKPNQ----PYQWLTYKQVLDRAQHLGSGLLQKGCKPSSDQFIGIFAQNRPEW 145
Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLY 173
II+ AC + ++ VPLYDTLG +A+ +I+N A++ I + + IL +C
Sbjct: 146 IISEYACYTYSMVAVPLYDTLGPDAILYIVNKADIGIVICDKPEKAQILLENCEQGKTPC 205
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTT 232
LKTI+ K ++GV + +E +LG + P P ++ + +TSGTT
Sbjct: 206 LKTIILMDLFDKELKDRGAKVGVEILALQEAEELGRNNIRKPVPPGPEDLCIVCFTSGTT 265
Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
G PKG +LT++ +VA + + T + C+ D S+LPLAH+++++++T G
Sbjct: 266 GNPKGAMLTHENVVANAAAFLRTIEDTVE-CTTSDVSISYLPLAHMFERVVQTVMYSCGA 324
Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG--ALSKKLFEFAYN 350
+GF++GD++ L +D++ LKPT+F VPR+ +RIY +KI SG + K L FA
Sbjct: 325 KVGFFQGDIKLLTDDMKTLKPTIFPVVPRLLNRIY----DKIQSGANTPMKKFLLNFAAT 380
Query: 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP 410
K+ +K+G+ +N + LLD LVF K++E GGR++ M++GAAP+ V +FLR G
Sbjct: 381 MKMIEVKQGIIRNDS--LLDKLVFKKVQETMGGRVRIMVTGAAPISPSVLKFLRSALGCQ 438
Query: 411 LTQGYGMVE 419
+ + YG E
Sbjct: 439 VFEAYGQTE 447
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| DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 134/409 (32%), Positives = 220/409 (53%)
Query: 19 KP-SGGPVYRCIYAKDGLLE--SPAGLESPWQFFCDSAKRIPNNQMLGGRKV-SDGKVGP 74
KP +GG + R D L+ + + + S K+ + G RK S+G +G
Sbjct: 36 KPENGGRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCFGERKKDSNGNLGK 95
Query: 75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134
+ W++Y + + G+ P + GI+ N EW+I A Q+ V Y+
Sbjct: 96 FEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYE 155
Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
TLG ++ ++ HAE+ +AF + L + + LKTI+ F ++ A+EL
Sbjct: 156 TLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKEL 214
Query: 195 GVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
GV+ ++++E ++ G PP T +STIMYTSGTTG PKGV++T++ + + V
Sbjct: 215 GVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVC 273
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQE 310
+V F+ KV + D ++S+LP AH+ ++++ H G +IG + GD+ ++ +++
Sbjct: 274 AVSD-FI---KVY-DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKL 328
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
L PT+F GVPRV++RI T + +IS AL + LF AYN K +++ G +LD
Sbjct: 329 LSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLD 388
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+ FSKI++A GG+++ +LSG+APL E FLRV + QGYG E
Sbjct: 389 LVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASE 437
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9XIA9 | LACS2_ARATH | 6, ., 2, ., 1, ., 3 | 0.6432 | 0.9809 | 0.6180 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_IX0278 | long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (658 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pm.C_290034 | acyl-CoA oxidase (EC-1.3.3.6) (664 aa) | • | 0.901 | |||||||
 | grail3.0096010101 | acyl-CoA oxidase (EC-1.3.3.6) (639 aa) | • | 0.900 | |||||||
 | fgenesh4_pg.C_scaffold_3547000001 | annotation not avaliable (326 aa) | • | 0.899 | |||||||
 | fgenesh4_pg.C_LG_XIX000851 | acyl-CoA oxidase (EC-1.3.3.6) (680 aa) | • | 0.899 | |||||||
 | eugene3.00100112 | annotation not avaliable (252 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_VII0199 | acyl-CoA oxidase (EC-1.3.3.6) (689 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_V0077 | acyl-CoA oxidase (EC-1.3.3.6) (691 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_XVI3692 | acyl-CoA oxidase (EC-1.3.3.6) (437 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_VI1706 | acyl-CoA oxidase (EC-1.3.3.6) (436 aa) | • | 0.899 | |||||||
 | gw1.XVI.1394.1 | hypothetical protein (823 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 419 | |||
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-171 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-164 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-142 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-112 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-89 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 8e-67 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-57 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-53 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 7e-52 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-48 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 4e-45 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 4e-37 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-32 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 3e-30 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 4e-30 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 4e-29 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 5e-29 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-23 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-20 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 8e-20 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 9e-20 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-19 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-18 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 2e-17 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-15 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-15 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 4e-15 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 9e-15 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-14 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 4e-14 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 4e-14 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 9e-14 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 9e-14 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 1e-13 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-13 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 6e-13 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-12 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 2e-12 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-12 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 7e-12 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 9e-12 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 4e-11 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 5e-11 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-11 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 6e-11 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 8e-11 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 9e-11 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-10 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-10 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-10 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-10 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 3e-10 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 3e-10 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-10 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-10 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 4e-10 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 5e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 5e-10 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 8e-10 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 8e-10 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 4e-09 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 6e-09 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 6e-09 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-09 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-08 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-08 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-08 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-08 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-08 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-08 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-08 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-08 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 4e-08 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 5e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-08 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 9e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-07 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-07 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-07 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-07 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-07 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-07 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-07 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-07 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-07 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-07 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 5e-07 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-07 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 8e-07 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 9e-07 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 2e-06 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-06 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 2e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 5e-06 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 5e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 7e-06 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 8e-06 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 1e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 2e-05 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 3e-05 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 3e-05 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 4e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-05 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-05 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 6e-05 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 7e-05 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 7e-05 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 7e-05 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 7e-05 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 7e-05 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 9e-05 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-05 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-04 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-04 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-04 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 3e-04 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 7e-04 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 8e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 8e-04 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 0.001 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.001 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.002 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 0.002 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.003 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 0.003 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 790 bits (2041), Expect = 0.0
Identities = 324/419 (77%), Positives = 371/419 (88%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M+ETYTVKVEE+RPA GKPS GPVYR IYAKDGLL+ PA ++SPWQFF D+ K+ PNNQ
Sbjct: 1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQ 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+V+D KVGPYVWLTY+EVYDAAIR GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61 MLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNSQ ITYVPLYDTLGANAVEFIINHAEVSIAFVQE+KI SILSCLP+C LKTIVSF
Sbjct: 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+VSS QK+EAEELGVSCFSWEEF +G+LDCELPPK+KT+I TIMYTSGTTGEPKGV+L
Sbjct: 181 GDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
TN+AI+AEVLS D + VT +V +EED+YFS+LPLAH+YDQ+IET+CI KG SIGFW+GD
Sbjct: 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
+RYLMED+Q LKPT+F GVPRVYDRIYTGI KISSGG L KKLF+FAYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGL 360
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
Q +A+P LD LVF KI+E GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYG+ E
Sbjct: 361 KQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTE 419
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 495 bits (1275), Expect = e-171
Identities = 219/416 (52%), Positives = 295/416 (70%), Gaps = 1/416 (0%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ +VEE + +DG+PS GPVYR I+AKDG G++S W F S ++ PNN MLG
Sbjct: 7 FIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++ DGK G YVW TYQEVYD I+ G+++RS GV +CGIYG+N PEWII+MEACN+
Sbjct: 67 REIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA AVEFII+H+EVSI FV+E KI + P Y+KT+VSF VS
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE G+ ++W+EFL+LG +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV + V ++ + +D Y S+LPLAHI+D++IE I G +IGFWRGDV+
Sbjct: 247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
L+ED+ ELKPT+F VPRV DR+Y+G+ K+S GG L K +F+ A++YK GNMKKG
Sbjct: 307 LIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHV 366
Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+A+PL D LVF+K+++ GG ++ +LSGAAPL HVE FLRV + + QGYG+ E
Sbjct: 367 EASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE 422
|
Length = 666 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 476 bits (1226), Expect = e-164
Identities = 191/418 (45%), Positives = 272/418 (65%), Gaps = 1/418 (0%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+++ +VEE DGKPS GPVYR + +K G + + + W F S ++ P+N+ML
Sbjct: 2 KSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKML 61
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ DGKVGPY+W TY+EVY+ ++ GSA+R+ G PG R GIYGSNCP+WI+AMEAC
Sbjct: 62 GWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC 121
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
+ ++ VPLYDTLG AV++I++HAE+ FVQ+ KI +L + LK IVSF +
Sbjct: 122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTS 181
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
V+ + +A ++GV +SW +FL +G + E P K +I TIMYTSGT+G+PKGVVLT
Sbjct: 182 VTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
++A+ V VD + +D Y SFLPLAHI D++IE + KG S+G++ GD+
Sbjct: 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
L +D+ ELKPT+ +GVPRV++RI+ GI + + +F Y YKL M +G
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS 361
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
KA+P+ D L F K++ GGRL+ ++SG APL +EEFLRVTS A + QGYG+ E
Sbjct: 362 HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTE 419
|
Length = 660 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 416 bits (1073), Expect = e-142
Identities = 153/348 (43%), Positives = 211/348 (60%), Gaps = 44/348 (12%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
GPY W++Y+EV + A+ GS +R+ G+ PGD+ GI+ N PEWII +AC SQ++ VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
YDTLG A+E+I+N E+SI F K+
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88
Query: 193 ELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
+S+EE +LG + P K +++TIMYTSGTTG PKGV+LT+ IVA V
Sbjct: 89 ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
++++ + D Y S+LPLAHI+++++E C++ G IG++ GD R L DI+EL
Sbjct: 143 INKIV---PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
KPT+F GVPRV DRIY GI K+++ G L + LF FAYNYKL +++G A+PL D
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
LVF KI+ A GGR++ MLSG APL +EFLRV G P+ QGYG+ E
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTE 305
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 342 bits (878), Expect = e-112
Identities = 146/375 (38%), Positives = 211/375 (56%), Gaps = 16/375 (4%)
Query: 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
F + + + + LG R DG VG Y W+TY E A GS + G+ G G+Y
Sbjct: 50 FVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLY 109
Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
N PEW+I AC++ + VPLYDTLG +AV+FI+NHAEV+ F + ++LSCL
Sbjct: 110 FINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS 169
Query: 169 RC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIM 226
+ L IV GV ++ + L G + P K +++TI
Sbjct: 170 EIPSVRL--IVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATIC 227
Query: 227 YTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
YTSGTTG PKGVVLT+ ++A V S+ F + D + S+LPLAHIY+++ +
Sbjct: 228 YTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS-------DVHISYLPLAHIYERVNQ 280
Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
+H G ++GF++GD LM+D+ L+PT+F VPR+Y+RIY GI+N + G L ++L
Sbjct: 281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERL 340
Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
F AYN K ++ G +P+ D LVF+KI+ GGR++ M SGA+PL V EFLR
Sbjct: 341 FNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLR 397
Query: 405 VTSGAPLTQGYGMVE 419
+ G + +GYGM E
Sbjct: 398 ICFGGRVLEGYGMTE 412
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 3e-89
Identities = 118/357 (33%), Positives = 190/357 (53%), Gaps = 19/357 (5%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G + +TY+E+Y+ S + S G+ GDR I+ +N PEW IA A + VP+
Sbjct: 41 GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPS-ILSCLPRCCLYLKTIVSFANV------SS 185
Y T + +I+N +E + FV+ ++ +L L C + IV V +
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKA 160
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245
+ + G+S F + L+ + P K +++TI+YTSGTTG PKGV+LT++ +
Sbjct: 161 LVLEVFPDEGISLFL----IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNL 216
Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
+A+V +D++ G D SFLPLAHI+++ E G ++ D R L+
Sbjct: 217 LAQVAGIDEVLPPIG----PGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLL 272
Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
ED++E++PT+ GVPRV++++Y GI K++ A+ +KLF +A + + +
Sbjct: 273 EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGP 332
Query: 366 APLL---DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
L D LVF KIR+A GGR++ LSG APL + F R + G P+ +GYG+ E
Sbjct: 333 LSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTE 388
|
Length = 613 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 8e-67
Identities = 140/422 (33%), Positives = 207/422 (49%), Gaps = 53/422 (12%)
Query: 39 PAGLESPW-------QFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVW 77
P +E+PW F S K+ + ++LG RK+ SDG+ +G Y W
Sbjct: 47 PELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEW 106
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY +V++ F S + + G N +R I+ EW+IA++ C Q IT V +Y +LG
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166
Query: 138 ANAVEFIINHAEVSIAFV---QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
A+ +N EV+ Q K+ I S L +K ++ +
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLET----VKRVIYMDDEGVDSDSSLSGS 222
Query: 195 G---VSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
VS FS E L + +D +LP +I+ IMYTSG+TG PKGV++T+ IVA V
Sbjct: 223 SNWTVSSFSEVEKLGKENPVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME---- 306
V M VV + D Y ++LPLAHI + E+ G +IG+ G L +
Sbjct: 281 GV--MTVVPK--LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNK 334
Query: 307 -------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
D LKPT+ + VP + DR+ G+ K+ + G L+KKLF+ AY +L ++
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGS 394
Query: 360 MPQNKAAPLL--DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGM 417
L D+LVF KIR GGR++ MLSG APL + F+ + GAP+ QGYG+
Sbjct: 395 WFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGL 454
Query: 418 VE 419
E
Sbjct: 455 TE 456
|
Length = 696 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 5e-57
Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 34/361 (9%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
++TY E+++ + FG + G+ G IY EW+ ++ SQ++ +Y
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVSSSQKKE 190
LG +A+ + + E +P++L + P TI+ ++ +S E
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-----TIIYLDSLPASVDTE 234
Query: 191 AEELGVSCFSWEEFLQLGTLD-CELPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIV 246
G +W + + G P N ++ IMYTSGTTG+PKGV+ T+ ++
Sbjct: 235 ----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLT 290
Query: 247 AEVLSVDQMFV-VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
A +L+++ + G E++TY S+LPLAHI + + + +G IGF G R L
Sbjct: 291 AGILALEDRLNDLIGPP-EEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLT 347
Query: 306 E-------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
+ D+ E +P GVPR++D I + K+ G+L +++F+ AY +L +K+
Sbjct: 348 DTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE 407
Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMV 418
G K P + VFS R GGR++AMLSG PL +EF+ V G + QG+G+
Sbjct: 408 G----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLT 462
Query: 419 E 419
E
Sbjct: 463 E 463
|
Length = 700 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-53
Identities = 84/345 (24%), Positives = 136/345 (39%), Gaps = 65/345 (18%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY+E+ + A R +A+R+ GV PGDR I N PEW++A+ A YVPL +L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
+ +I+ +E + + +P +L L + + L I+ + + E L
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA--- 117
Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
+ + PP +++ I+YTSGTTG+PKGV+LT++ ++A + + F +
Sbjct: 118 --------GASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169
Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF---WRGDVRYLMEDIQELKPTM 315
T D LPL + G ++ + D L++ I++ K T+
Sbjct: 170 T-----PGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
GVP + + AP S
Sbjct: 225 LYGVPTLLRLLL-------------------------------------KAPEEKKYDLS 247
Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGMVE 419
+R +LSG PLP + G PL GYG E
Sbjct: 248 SLRL--------VLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284
|
Length = 412 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 7e-52
Identities = 104/363 (28%), Positives = 158/363 (43%), Gaps = 65/363 (17%)
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
G+ Y T+ +V D A R +A++S G+ PGDR I NC EWIIA A
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFV--------QENKIPSILSCLPRCCLYLKTIVSF 180
VPLY TL A + +++ H++ FV + +P L + T+
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIIL--FPYSTLKDH 115
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+ W++ L P + +++TI+YTSGTTG+PKGV+L
Sbjct: 116 ------------------YKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVML 157
Query: 241 TNQAI--VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFW 297
+ A A+ + D S+LPLAHI + I+E ++ G + F
Sbjct: 158 SFGAFAFAAQGTIEIIGL-------TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFV 210
Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
+ D+Q +PT+F VPR++ + GI K+ +KL N L
Sbjct: 211 ES-LDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLP-----PEKL-----NLLLKI-- 257
Query: 358 KGMPQNKAAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG 416
P+L SLV KI + G + + SGAAP+P + + R G P+ +GYG
Sbjct: 258 ---------PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYG 307
Query: 417 MVE 419
M E
Sbjct: 308 MTE 310
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-48
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 39/199 (19%)
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
++T++YTSGTTG PKGV+LT++ ++A+ ++ ++ ++ D SFLPLAH+++Q
Sbjct: 90 LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLS-----PGDRVLSFLPLAHVFEQ 144
Query: 282 IIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
+ + + G + F L+ED++E++PT+F VPRV+++IY GI K+++ G L
Sbjct: 145 RLGEYLPLSSGARVNF-AESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPL 203
Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 400
+KLF +A GGRL+ +SG APLP V
Sbjct: 204 KRKLFRWA-------------------------------LGGGRLRFAVSGGAPLPPEVL 232
Query: 401 EFLRVTSGAPLTQGYGMVE 419
EF R G P+ +GYG+ E
Sbjct: 233 EFFR-ALGIPILEGYGLTE 250
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 4e-45
Identities = 109/373 (29%), Positives = 174/373 (46%), Gaps = 53/373 (14%)
Query: 75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA-MEACNSQAITYVPLY 133
+ LTY++ Y+A + A G+ GI G N PEW IA + A + I V +Y
Sbjct: 6 WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIA-VGIY 64
Query: 134 DTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
T A +++ +E +I V Q KI +I LP LK I+ + ++
Sbjct: 65 TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH----LKAIIQY-------RE 113
Query: 190 EAEELGVSCFSWEEFLQLG------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
+E + +SW+EF++LG LD + +K T++YTSGTTG PKGV+L++
Sbjct: 114 PLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHD 173
Query: 244 AIV--AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRGD 300
I A+ G+ ++ S+LPL+HI QI++ I G + F + D
Sbjct: 174 NITWTAKAAVKHMDLRTVGQ-----ESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPD 228
Query: 301 VR--YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
L++ ++E++PT F GVPRV+++I + + L +K+ +A
Sbjct: 229 ALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWA-------KGV 281
Query: 359 GMPQNKAAP-----------LLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT 406
G+ N L LVF K+R+A G R Q +GAAP+ EF ++
Sbjct: 282 GLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LS 340
Query: 407 SGAPLTQGYGMVE 419
P+ + YGM E
Sbjct: 341 LNIPIMELYGMSE 353
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-37
Identities = 84/355 (23%), Positives = 130/355 (36%), Gaps = 78/355 (21%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY+E+ A R +A+++ GV PGDR I N PE++IA A VPL L
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I+N A + + + + L ++
Sbjct: 99 PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPI--------- 149
Query: 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ E G D + P +++ ++YTSGTTG PKGVVLT++ ++A +
Sbjct: 150 --TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL 207
Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM----------- 305
G + +D S+LPL HI+ I+ G G L+
Sbjct: 208 ---GGGLTPDDVVLSWLPLFHIFGLIV-------GLLAPLLGGGTLVLLSPEPFDPEEVL 257
Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
I++ K T+ SGVP
Sbjct: 258 WLIEKYKVTVLSGVPTFLRE---------------------------------------- 277
Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGMVE 419
LLD+ K + L+ +LSG APLP + E F + +GYG+ E
Sbjct: 278 --LLDNP--EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTE 328
|
Length = 534 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-32
Identities = 85/381 (22%), Positives = 135/381 (35%), Gaps = 113/381 (29%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
+A+R P+ L G+ LTY E+ + + RF + ++ GV GDR
Sbjct: 3 DLLERAARRFPDRPAL----TFFGRK-----LTYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 107 IYGSNCPEWIIAMEACNSQAITYV-----PLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
+ NCP++ IA V PLY +E +N + + V
Sbjct: 54 LMLPNCPQFPIAYFGI--LKAGAVVVPVNPLYT---PRELEHQLNDSGAKVLIV------ 102
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
S+E+ L G +
Sbjct: 103 ------------------------------------AISFEDALASGAPLPLPVELSPDD 126
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
++ + YT GTTG PKG +LT++ +VA +V Q+ + ED + + LPL HI+
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVA---NVQQIAAWVKDLREGEDRFLTALPLFHIFGL 183
Query: 282 IIE-THCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
+ + G + ++++I+ + T+F GVP +Y + N
Sbjct: 184 TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP----TLYNALLN------- 232
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
P FS +R +SG APLP+ V
Sbjct: 233 --------------------------HPEFKKYDFSSLRLC--------ISGGAPLPVEV 258
Query: 400 -EEFLRVTSGAPLTQGYGMVE 419
E F T GAPL +GYG+ E
Sbjct: 259 AERFEEKT-GAPLVEGYGLTE 278
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-30
Identities = 81/349 (23%), Positives = 133/349 (38%), Gaps = 72/349 (20%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY E+ + R +A+R+ GV GDR ++ N E++ A A P+ L
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
+ +I+N AE + V +P + + LP+ V V A L
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-----PTVRTVIVEGD--GPAAPLAPEV 145
Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
+EE L + + P + + + ++YTSGTTG PKGVVL+++ + L+V +
Sbjct: 146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL 205
Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHC----IHKGCSI---GFWRGDVRYLMEDIQEL 311
+ +D Y +P+ H++ + G R D L++ I+
Sbjct: 206 S-----RDDVYLVIVPMFHVH----AWGLPYLALMAGAKQVIPR--RFDPENLLDLIETE 254
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
+ T F VP ++ M + + A +D
Sbjct: 255 RVTFFFAVPTIW-------------------------------QM---LLKAPRAYFVD- 279
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGMVE 419
FS +R ++ G A LP + EF G L QGYGM E
Sbjct: 280 --FSSLRL--------VIYGGAALPPALLREFKEKF-GIDLVQGYGMTE 317
|
Length = 521 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-30
Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 12/235 (5%)
Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
K++A++LG+S +++ + T + ++ + I++I+YTSGT+G+PKGV+L+N+ +
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN 331
Query: 248 EVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME 306
V+ + T+ S+LP++HIY+++I G +I W D+ Y +
Sbjct: 332 TVVPLCKHSIFKKYNP----KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387
Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
DI K + +GVP+V++RIYT I +I++ L + L + + + N G +
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSK---- 443
Query: 367 PLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
L+ + + SKI++ L+ +L+G L + E L V QGYG+ E
Sbjct: 444 -FLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTE 497
|
Length = 746 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-29
Identities = 72/345 (20%), Positives = 122/345 (35%), Gaps = 58/345 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+ ++ A+R +R G+ GD + N E+ C + +
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + + ++ + F +++ + + + I+ S +
Sbjct: 71 PDELAHQLKISKPKLIFCDPDELDKVKEAA-KELGPVVRIIVL----DSAPDGVLRIED- 124
Query: 198 CFSWEEFLQLGTLDCELPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
E L P K + + ++Y+SGTTG PKGV+L+++ I+A + V
Sbjct: 125 --LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182
Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC-SIGFWRGDVRYLMEDIQELKPTM 315
G S D +FLP H Y + G I + D ++ I++ K T
Sbjct: 183 --KGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
VP + AL+K +PL+D S
Sbjct: 241 LFLVPPIAV--------------ALAK-----------------------SPLVDKYDLS 263
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRV-TSGAPLTQGYGMVE 419
+R F SGAAPL ++E LR + QGYGM E
Sbjct: 264 SLRVIF--------SGAAPLSKELQEELRKRFPNTTIKQGYGMTE 300
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-29
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ R +A+ + G+ GDR I+ N P W+IA VPL
Sbjct: 31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
A+ +I+ + FV + S + LP L+ +V + +E +
Sbjct: 91 ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA----LEHVVIC------ETEEDDPH 140
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQAIVAE 248
++ +FL G P +++ I++TSGTTG PKG +LT N A AE
Sbjct: 141 TEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE 200
Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--------- 299
L + E D Y + P H++ G + RG
Sbjct: 201 YLGLT-----------EGDRYLAANPFFHVF-------GYKAGVNAPLMRGATILPLPVF 242
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIY 327
D + I+ + T+ G P +Y+ +
Sbjct: 243 DPDEVFRLIETERITVLPGPPTMYNSLL 270
|
Length = 513 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 64/294 (21%), Positives = 107/294 (36%), Gaps = 41/294 (13%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY ++ R +A++ G GDR IY N PE +IA+ A + L
Sbjct: 41 LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKKEAEELG 195
A AV I + + K I + S LG
Sbjct: 101 AEAVADRIADLGPKVLIADD-------GTFRN----GKEIALLEDADAVLSSVVVVPRLG 149
Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255
++E ++ + E P + ++YTSGTTG+PKG+V ++ + E
Sbjct: 150 ---LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRL-TAK 205
Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI----HKGCSIGFWRGDVRY----LMED 307
F D +++ IY + + G + + G Y L E
Sbjct: 206 FHGDLL---PGDRFWNSSDPGWIYGL---WYSVFSPLASGATTVLYDGRPFYSPERLWEA 259
Query: 308 IQELKPTMFSGVPRVYDRI--------YTGISNKI--SSGGALSKKLFEFAYNY 351
+++ K T+F P R+ Y S ++ S+G L+ + FE+ Y+
Sbjct: 260 LEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSA 313
|
Length = 528 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-20
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS-QAITYVP 131
G + +T+ E+ + R + + + GV PGDR I N PEW+IA A + A+ VP
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP-VP 59
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENK 159
+Y T V +I+N + + FV E+K
Sbjct: 60 IYPTSSPEEVAYILNDSGARVVFV-EDK 86
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 8e-20
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY E+ A R +A+ G+ GDR G N + + AC +VP+ L
Sbjct: 37 WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLT 96
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I++H+ V P++ ++ + L +S
Sbjct: 97 GEELAYILDHSGARAFLVD----PALAPTAE---------------AALALLPVDTLILS 137
Query: 198 CF--------SWEEFLQLGTLDCELPPKKKTNIST---IMYTSGTTGEPKGVVLTNQAIV 246
W +F P + I+YTSGT PKG +LT++A++
Sbjct: 138 LVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALI 197
Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
AE +S +V G + S +D LPL H
Sbjct: 198 AEYVSC----IVAGDM-SADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 9e-20
Identities = 61/225 (27%), Positives = 91/225 (40%), Gaps = 35/225 (15%)
Query: 67 VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
VS G TY + Y R +A+ S GV PGDR N + A
Sbjct: 15 VSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFA----- 69
Query: 127 ITYVPLYDTLGANAV-------------EFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
VP G AV +IINHAE + FV ++ +P + + PR
Sbjct: 70 ---VP-----GMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRL--- 118
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
T+ + + E V + EE L+ + + E P + + + YTSGTTG
Sbjct: 119 -PTVKAVVVYDDADMPETSLPNVYAY--EELLEEESPEYEWPELDENTAAGLCYTSGTTG 175
Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
PKGVV +++++V L+ SE DT +P+ H+
Sbjct: 176 NPKGVVYSHRSLVLHTLASAL---PDSLGLSESDTVLPVVPMFHV 217
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 94/377 (24%), Positives = 148/377 (39%), Gaps = 99/377 (26%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDT 135
TY E+ R + +R+ GV PGDR I NCP+ I+A A V PLY T
Sbjct: 59 TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY-T 117
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-------- 187
F + A V+I + +K+ + L R L+TIVS N+ ++
Sbjct: 118 AHELEHPFEDHGARVAIVW---DKVAPTVERLRRT-TPLETIVS-VNMIAAMPLLQRLAL 172
Query: 188 -------KKEAEELGVSC---FSWEEFLQ---LGTLDCELPPK-KKTNISTIMYTSGTTG 233
+K L WE + G P+ +++ I+YTSGTTG
Sbjct: 173 RLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG 232
Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGK-----VCSEEDTYFSFLPLAHIYDQIIETHCI 288
+PKG LT++ + A GK + + + LP+ H Y T C+
Sbjct: 233 KPKGAQLTHRNLFANAAQ--------GKAWVPGLGDGPERVLAALPMFHAYGL---TLCL 281
Query: 289 HKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
SIG D+ +++ +++ PT GVP +Y++I ++
Sbjct: 282 TLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA-----------EAAE- 329
Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEF 402
++G+ S +R AF SGA LP+ VE +
Sbjct: 330 -------------ERGVD------------LSGVRNAF--------SGAMALPVSTVELW 356
Query: 403 LRVTSGAPLTQGYGMVE 419
++T G L +GYG+ E
Sbjct: 357 EKLTGGL-LVEGYGLTE 372
|
Length = 573 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 10/217 (4%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY + + + S +R G+ G+R IY E + AM +VP+ L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A V I+ V + ++ + LP C I+ V G
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLII----VGDPAHASEGHPGEE 141
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
SW + L LG D P ++++ I+YTSG+TG PKGVVL+++ +VA SV
Sbjct: 142 PASWPKLLALGDAD-PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
+D + LPL+ Y T + G ++
Sbjct: 201 NR-----PDDRLLAVLPLSFDYGFNQLTTAFYVGATV 232
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 75/348 (21%), Positives = 120/348 (34%), Gaps = 74/348 (21%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ R + + +RG GD + N E+ + A S
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + + +A + L L L+ +V S
Sbjct: 93 PAEIAKQVKDSGAKLAITT----SELAEKLAS--LALEPVVLLD----------SADDGS 136
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ L + + K+ +++ + Y+SGTTG KGV+LT++ ++A +V Q+
Sbjct: 137 AAIDDL-LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA---NVAQLVA 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELK 312
G ED LP+ HIY +I + G ++ F D+ + I++ K
Sbjct: 193 GEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRF---DLEKFLAAIEKYK 249
Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
T VP + AL K P++D
Sbjct: 250 VTHLPVVPPIV--------------LALVKH-----------------------PIVDKY 272
Query: 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEE-FLRVTSGAPLTQGYGMVE 419
S L+ + SGAAPL + E F G L QGYGM E
Sbjct: 273 DLSS--------LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTE 312
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA----CNSQAITYVPLYD 134
TY+E YD R SA+ G+ GD + N P +EA + A+ VPL
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPA---MLEAHFGVPMAGAV-LVPLNT 86
Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
L A+ + FI+NH+E + FV + + L L K I+ + S E E
Sbjct: 87 RLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL--LSTKEIIDTEIIVISPAAEDSEE 144
Query: 195 GVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
G +E+ L G D +PP + + ++ YTSGTTG PKGVV T++ L
Sbjct: 145 G----DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNV 200
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
+ + Y LP+ H
Sbjct: 201 IEWGMPD-----RPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 55/202 (27%), Positives = 78/202 (38%), Gaps = 51/202 (25%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+ + I+YTSGTTG PKGVVLT+ + A ++ + + T D LPL H++
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWT-----ASDVLLHALPLHHVHG 143
Query: 281 QIIETHCIH-KGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338
HC G S+ F R D + + T+F GVP +Y R
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR------------- 190
Query: 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH 398
LL+ F A L+ +SG+A LP+
Sbjct: 191 -----------------------------LLEHYEFDDAAAAAARNLRLFVSGSAALPVP 221
Query: 399 V-EEFLRVTSGAPLTQGYGMVE 419
V E + T G L + YGM E
Sbjct: 222 VLERWEERT-GHTLLERYGMTE 242
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 65/208 (31%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--- 277
+ + I+YTSGTTG+PKGVVL+++ ++A ++ Q +T E D S LPL H
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLT-----EGDVLLSVLPLFHVVG 55
Query: 278 ----IYDQIIE--THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 331
+ ++ T +++G +E I++ + T+ GVP +YD
Sbjct: 56 GGSGLLGALLAGGTVVLYEG------FPFPLSFLELIEQYRVTVLFGVPTLYDA------ 103
Query: 332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 391
L + + L+ ++SG
Sbjct: 104 ------------------------------------LAKAAEDRGYDLS---SLRLLISG 124
Query: 392 AAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
PL + E GAP+ +GYG+ E
Sbjct: 125 GEPLSPELLERFEERPGAPILEGYGLTE 152
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 9e-15
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 29/200 (14%)
Query: 79 TYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY+E+ + A R +R+ GV PGDR + E ++A+ A YVPL
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A + FI+ A + + S L+ L + L + A + +
Sbjct: 61 AERLAFILEDAGARLLLTDS-ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGP 119
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+++ ++YTSG+TG PKGVV+T++++V + + + +
Sbjct: 120 ----------------------DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157
Query: 258 VTGKVCSEEDTYFSFLPLAH 277
+ +D F L+
Sbjct: 158 L-----DPDDRVLQFASLSF 172
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 2e-14
Identities = 84/362 (23%), Positives = 143/362 (39%), Gaps = 72/362 (19%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA---CNSQAITYVPLYD 134
+T+ +D RF + ++ GV GDR I NCP+ +I + PLY
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 135 TLGANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSS----- 186
+E+ ++ + + + ++ ++ S + + I F +
Sbjct: 110 E---RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF 166
Query: 187 -QKKEAE-----ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
QKK++ + W + E+P + +++ + YT GTTG PKGV+L
Sbjct: 167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVML 226
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFW- 297
T++ +V+ L M V C E E+ LP H+Y + I +G +
Sbjct: 227 THKNLVSNTL----MGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP 282
Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
+ D++ + E I++ K T+F G P IY + N
Sbjct: 283 KFDMKMVFEAIKKHKVTLFPGAP----TIYIALLN------------------------- 313
Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGM 417
+PLL S IR A +SG+APLP+ V+E +G L +GYG+
Sbjct: 314 --------SPLLKEYDISSIR--------ACISGSAPLPVEVQEKFETVTGGKLVEGYGL 357
Query: 418 VE 419
E
Sbjct: 358 TE 359
|
Length = 563 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAIT------YV 130
LTY E+ + A R + ++G+ PGD GIY N E++ AM ++A+ YV
Sbjct: 29 LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88
Query: 131 P-----LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
L D A A+ + E + ++ +L LP+ L+T+V + S
Sbjct: 89 EDELRYLLDDSDAVAL---VYEREFA------PRVAEVLPRLPK----LRTLVVVEDGS- 134
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
+L +E+ L G+ + + + ++ ++YT GTTG PKGV+
Sbjct: 135 -----GNDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM 182
|
Length = 533 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 41/260 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + R+G+A+R G+ +R + + PE+ A VP+ L
Sbjct: 31 LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90
Query: 138 ANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
+ + +N + + + E + L P +L+ ++ L
Sbjct: 91 PDDYRYYLNDSRARVLVISEELWEVLKPALQKDP----HLRHVI------VVGGAGPGAL 140
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVD 253
S+ + + + E +++ +Y+SG+TG PKGVV + + V
Sbjct: 141 -----SYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAK 195
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM-------- 305
+ +T E+D FS L Y + G G LM
Sbjct: 196 NVLGIT-----EDDVVFSAAKLFFAYG-------LGNGLYFPLSVGATTVLMPERPTPDA 243
Query: 306 --EDIQELKPTMFSGVPRVY 323
I+ KPT+F GVP +Y
Sbjct: 244 VFATIERYKPTVFFGVPTLY 263
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 9e-14
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 51/196 (26%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
I+YTSGTTG PKGV+LT++ ++A ++ G S D Y PL H +
Sbjct: 6 ILYTSGTTGRPKGVMLTHRNLLANAVNALA-----GVDLSPGDVYLLAAPLYHAAGGLFL 60
Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
+ G ++ D +++ I+ + T VP ++ R+ +
Sbjct: 61 LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLL---------------R 105
Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
L +FA Y L +++ ++ GAAP+P ++ +
Sbjct: 106 LPDFA-RYDLSSLRL-----------------------------IIYGAAPMPAELKRAM 135
Query: 404 RVTSGAPLTQGYGMVE 419
G QGYGM E
Sbjct: 136 IEWFGPVFVQGYGMTE 151
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 9e-14
Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 34/205 (16%)
Query: 72 VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
V LTY E+ A R + S GV PG+ I E ++A+ A YVP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
L A + +I+ + ++ Q + L L + + + +
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLTQAH-----LRVDDVGLPGLALDDALSEIPDTDPIPQ 361
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
LG ++ I+YTSG+TG+PKGV + ++A+ +
Sbjct: 362 ALLG------------------------DALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLA 276
F + +D + L+
Sbjct: 398 AGARFGLD-----ADDRVLALASLS 417
|
Length = 642 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 55/257 (21%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
T+Q++ A A++++G+ G R + G N E ++ + AC L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHAC-------------LLL 47
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
A ++N + EN+ + L L V L S
Sbjct: 48 GAEIAMLNTR------LTENERTNQLEDLD---------VQLL------------LTDSL 80
Query: 199 FSWEEFLQLGTLDCELPPKKKTNIS---------TIMYTSGTTGEPKGVVLTNQAIVAEV 249
++F E + +T++S T+M+TSGTTG+PK V T + A
Sbjct: 81 LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASA 140
Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQ 309
+ + T E+D + LPL HI I + +G ++ + L+E I
Sbjct: 141 VGSKENLGFT-----EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ-LLEMIA 194
Query: 310 ELKPTMFSGVPRVYDRI 326
+ T S VP +R+
Sbjct: 195 NERVTHISLVPTQLNRL 211
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 57/201 (28%)
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QI 282
I YTSGTTG PKG +LT++ ++ S+ + +T E D +PL H++ +
Sbjct: 6 LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLT-----EGDRTLVPVPLFHVFGLVL 60
Query: 283 IETHCIHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
+ G ++ + D + I+ + T GVP ++ +
Sbjct: 61 GVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALLE----------- 107
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI-H 398
P D S +R +SG AP+P
Sbjct: 108 --------------------------HPDFDKFDLSSLR--------TGISGGAPVPPEL 133
Query: 399 VEEFLRVTSGAPLTQGYGMVE 419
V A +T GYGM E
Sbjct: 134 VRRIREEFPMAEITTGYGMTE 154
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 70/281 (24%), Positives = 112/281 (39%), Gaps = 59/281 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T++++ DA R + + GV PGDR GI+ NC EW++ A V +
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 138 ANAVEFIINHAEVS-------------IAFVQE------NKIPSILSC--LPRCCLYLKT 176
A+ +E+ + + V A +QE P L+C LP L+
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPE----LRG 161
Query: 177 IVSFANVSSS-----QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGT 231
+VS A + +A VS + E + +LD + P I YTSGT
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAE--RQASLDRDDP-------INIQYTSGT 212
Query: 232 TGEPKGVVLT------NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
TG PKG L+ N VAE L + +E D +PL H + ++
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGL-----------TEHDRLCVPVPLYHCFGMVLAN 261
Query: 286 -HCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVY 323
C+ G + + D ++ ++E + T GVP ++
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF 302
|
Length = 558 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY ++ D R+ A + G+ GD + N PE ++A+ A + L+
Sbjct: 38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ A +S V L LK +++ V + +L
Sbjct: 98 LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP-----DGVDL--- 149
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
+ G +I+ + YT GTTG+PKGV+ T+++I
Sbjct: 150 ---LAAAAKFGPAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195
|
Length = 524 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 74/327 (22%), Positives = 129/327 (39%), Gaps = 30/327 (9%)
Query: 72 VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
G WLTY V A GS + + GV PGD G+ +I AC T +P
Sbjct: 452 SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE- 190
L + + +I+ ++ + F N + +IL+C R L+T+V S ++
Sbjct: 512 LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR---KLETVV---YTHSFYDEDD 563
Query: 191 ---AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV- 246
A +L ++ +E Q G L + T + Y T G A+V
Sbjct: 564 HAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASG---DGLAVVR 620
Query: 247 ---AEVLSVDQMFVVTGKVCS--EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
A+VL V+TG + S ++ F P A +++++ G ++ D
Sbjct: 621 VTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDA 678
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK--LGNMKKG 359
+L + +PT+ P ++ +S A+ LFE A+ + L N+
Sbjct: 679 AHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIH-- 736
Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQ 386
+ + LL + F +E GG ++
Sbjct: 737 ---RRDSSLLRFIFFRATQELLGGCVE 760
|
Length = 1452 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 70/352 (19%), Positives = 124/352 (35%), Gaps = 90/352 (25%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY+++++ + + + V G+R I N E+I+ + A VPL L
Sbjct: 28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS-QKKEAEELG 195
N + F + + ++ FV++ +F N++ S QK +
Sbjct: 88 TENELIFQLKDSGTTVLFVEK---------------------TFQNMALSMQKVSYVQRV 126
Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI----VAEVLS 251
+S S +E + + + I I YTSGTTG+PKG VLT + + + +
Sbjct: 127 ISITSLKEIEDRKIDNFVEKNESASFI--ICYTSGTTGKPKGAVLTQENMFWNALNNTFA 184
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET--HCIHKGCSIGFWRGDVRYLMEDIQ 309
+D + D LPL HI + G I + + + I+
Sbjct: 185 ID---------LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIE 235
Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
+ K T+ GVP ++ +
Sbjct: 236 KHKVTVVMGVPTIHQAL-------------------------------------INCSKF 258
Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGMVE 419
++ +R + +G AP P EE +R + G QG+GM E
Sbjct: 259 ETTNLQSVRWFY--------NGGAPCP---EELMREFIDRGFLFGQGFGMTE 299
|
Length = 496 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 15/207 (7%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
T+ + A A+ G+ R G NC E + + A + PL L
Sbjct: 39 TTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQL 98
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEEL- 194
+ + IINHAE + + L C C+ V F S + A
Sbjct: 99 MNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCV---RAVVFIGPSDADSAAAHMPE 155
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS--- 251
G+ +S+E L + + P +T + I Y++GTTG PKGVV +++++ + LS
Sbjct: 156 GIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT 215
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHI 278
D + V G+ ++ +P+ H+
Sbjct: 216 TDSLAVTHGE------SFLCCVPIYHV 236
|
Length = 576 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 9e-12
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 28/169 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + A R +R+RGV PGD + PE ++A+ A YVPL
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A + F++ + + E+ P A++L +
Sbjct: 73 AERLAFMLEDSGARVLLTDESLAPLA--------------------------RADQLPLV 106
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
E + P +++ +MYTSG+TG PKGV + ++ +V
Sbjct: 107 ILEEELDAEDA--GPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY E+YD R +R GV GDR IY PE +IAM AC + ++
Sbjct: 74 YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133
Query: 138 ANAVEFIINHAE----VSIAF-VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK--- 189
+ + I+ A+ V+ +F ++ ++ + K ++ A + SQ K
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRV-----------VPYKPLLDKA-LELSQHKPHK 181
Query: 190 ---------EAEELGVSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
A W E + + +DC P + T+ I+YTSGTTG+PKGVV
Sbjct: 182 VLILNRGQVPAPLKPGRDLDWAELMAKARPVDCV--PVESTDPLYILYTSGTTGKPKGVV 239
Query: 240 LTN 242
Sbjct: 240 RDT 242
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 5e-11
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 47/222 (21%)
Query: 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
++ +F++ E P +++ + YT GTTG PKG +LT+ + + V D +
Sbjct: 172 TYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS 231
Query: 260 GKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFS 317
+ + LPL HIY +I + +G I R DV + DI+E + T+F
Sbjct: 232 RATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFP 291
Query: 318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
GVP ++ + P L+ S
Sbjct: 292 GVPTMWIAL-------------------------------------ANDPSLEKRDLSS- 313
Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
L + SG APLP+ V F +G L G+GM E
Sbjct: 314 -------LATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTE 348
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 39/213 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T++E+ D A+ RGV GDR I N E++ ++ A N VP+ L
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV- 196
+ F+++ + + + A V+++ + L
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA---------------------ALAPVATAVRDIVPLLSTV 141
Query: 197 ---------SCFSWEEFLQLGTLDCELPPKKKTNIST--IMYTSGTTGEPKGVVLTNQAI 245
S +E+ L P N S IMYTSGTTG PKG VLT+ +
Sbjct: 142 VVAGGSSDDSVLGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANL 199
Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
+ + + T D F +PL HI
Sbjct: 200 TGQAM----TCLRTNGADINSDVGFVGVPLFHI 228
|
Length = 542 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+T+ E+++A + + + GV GDR + N E I+ + A V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + ++ AEV ++ L V FA + + K+EAE
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAK---------LIPGISVKFAELMNGPKEEAEIQ--- 135
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
EEF LD ++TIMYTSGTTG+PKGV+ T
Sbjct: 136 ----EEF----DLD---------EVATIMYTSGTTGKPKGVIQT 162
|
Length = 483 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 12/206 (5%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E+ + + RF + +R RGV GDR ++ NCP++ I +VP+
Sbjct: 59 ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + + +N A + + P + L + S A+V ++ +
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLR 178
Query: 198 -----CFSWEEFLQL---GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
+ L T LPP ++ + YT GTTG PKG T + +V
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238
Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPL 275
+ V E+ + SFLP
Sbjct: 239 AA----AYAVAVVGGEDSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L YQ + A + + G+ PGDR + +++ A AC + VPL +G
Sbjct: 50 LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
E I +A S P + ++ + N ++ +
Sbjct: 110 FGGRESYIAQLRGMLA-----------SAQPAAIITPDELLPWVNEATHGNP-----LLH 153
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQM 255
S F L D LP +I+ + Y+SG+T P+GV++T++A++A + +S D +
Sbjct: 154 VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL 213
Query: 256 FVVTGKVCSEEDTYFSFLPLAH 277
V G C S+LP H
Sbjct: 214 KVRPGDRC------VSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 29/182 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ A +A+R+ GV PGD + E I+A+ YVP+
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A I+ A + E +
Sbjct: 73 AERRAAILARAGARAVLTD----------------------------PGLAQPEEAPDLL 104
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ + P +++ +++TSG+TGEPKGV++T++A V +L V++ F
Sbjct: 105 VVADDAAAAESPAP-PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFG 163
Query: 258 VT 259
V
Sbjct: 164 VG 165
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 50/256 (19%), Positives = 79/256 (30%), Gaps = 97/256 (37%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+QE+ + + + GV GDR + N E+++ A L
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLAL-------------LR 48
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
AV +N LP+ EE
Sbjct: 49 LGAVVLPLNPR------------------LPQ----------------------EE---- 64
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
++ L D + +TI++TSG+TG+PK VV T +A +
Sbjct: 65 ---LQQQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG 114
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-------------DVRYL 304
+T +D + LPL H+ G +I R D +
Sbjct: 115 LT-----PDDNWLLSLPLFHV-----------SGLAI-VMRSLLAGGALVLPDKFDAEAI 157
Query: 305 MEDIQELKPTMFSGVP 320
E ++ T S VP
Sbjct: 158 AEALENHGVTHISLVP 173
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+++ E+ R +A+R GV PGDR Y N PE +IAM A S + G
Sbjct: 87 ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146
Query: 138 ANAV--EFIINHAEVSIA----------FVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
AV F +V A + KI I+ LP L+ +V +SS
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYLSS 202
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPK-KKTNIST---IMYTSGTTGEPKGVV 239
+ FS L D P + ++ I+Y+SGTTG PK +V
Sbjct: 203 -----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV 255
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Query: 70 GKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129
G V Y +Y E+ + R + S G+ GD+ ++ NCPE+I
Sbjct: 33 GVVRRY---SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89
Query: 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
VP+ L +I+ +++ S+ P L+ I ++
Sbjct: 90 VPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRVALP 145
Query: 190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
+ GVS F+ + Q TL C PP + + I++TSGTT PKGVV+T
Sbjct: 146 ADD--GVSSFTQLKAQQPATL-CYAPPLSTDDTAEILFTSGTTSRPKGVVIT 194
|
Length = 517 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 84/356 (23%), Positives = 130/356 (36%), Gaps = 85/356 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN---SQAITYVPLYD 134
TY +V + R + + G+ GD + NCPE+++A + + T P Y
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY- 109
Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
E I A+ S A K+ SC Y+ + A ++
Sbjct: 110 ----TPAE-IAKQAKASGA-----KLIITQSC------YVDKLKGLAEDDGVTVVTIDDP 153
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
C + E Q + ++ + Y+SGTTG PKGV+LT++ +V SV Q
Sbjct: 154 PEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQ 210
Query: 255 MFVVTGKV----CSEEDTYFSFLPLAHIYDQIIETHCI-----HKGCSIGFWRG-DVRYL 304
V G+ +D LP+ HIY + + G +I ++ L
Sbjct: 211 Q--VDGENPNLYFHSDDVILCVLPMFHIY----SLNSVLLCGLRVGAAILIMPKFEIGAL 264
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
+E IQ K T+ VP + + A +
Sbjct: 265 LELIQRHKVTIAPFVPPI---------------------VLAIAKS-------------- 289
Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGMVE 419
P+++ S IR +LSGAAPL +E+ R A L QGYGM E
Sbjct: 290 --PVVEKYDLSSIR--------MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE 335
|
Length = 537 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 77/360 (21%), Positives = 119/360 (33%), Gaps = 112/360 (31%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
W TY E+ R + +R RG G+R + N + AC YVPL L
Sbjct: 23 W-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
A+ ++ ++ AE + + + A +S
Sbjct: 82 SASELDALLQDAEP--RLLLGDDAVAAGRTDV---------EDLAAFIASADALEPADTP 130
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
S +PP++ +S I++TSGT+G+PKGV+L+ + + + F
Sbjct: 131 S----------------IPPER---VSLILFTSGTSGQPKGVMLSERNLQQTAHN----F 167
Query: 257 VVTGKVCSEEDTYFSFL---PLAHIYDQI--IETHCIHKGC---SIGF-------WRGDV 301
V G+V D + SFL P+ HI I + G S GF GD
Sbjct: 168 GVLGRV----DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD- 222
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
L T + VP++ + P
Sbjct: 223 -------PALGITHYFCVPQMAQAF-------------------------------RAQP 244
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGMVE 419
AA L L A+ +G AP H E + + G P+ G+GM E
Sbjct: 245 GFDAAAL--------------RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSE 287
|
Length = 488 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 47/199 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYD 134
TY+E + + + G+ GDR GI+ N PEW++ A V P Y
Sbjct: 44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYR 103
Query: 135 TLGANAVEFIINHAEVS-------------IAFVQENKIPSILSCLPRCCL-----YLKT 176
+ +E+ +N + +A + E P + +C P L+
Sbjct: 104 L---SELEYALNQSGCKALIAADGFKDSDYVAMLYE-LAPELATCEPGQLQSARLPELRR 159
Query: 177 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--LDCELPPKKKT-------NISTIMY 227
++ +E +++E L LG D EL ++ T NI Y
Sbjct: 160 VIFL----------GDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQ---Y 206
Query: 228 TSGTTGEPKGVVLTNQAIV 246
TSGTTG PKG LT++ I+
Sbjct: 207 TSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 78 LTYQEVYDAAIRF-GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAITYVPLYDT 135
++Y+E+ + A R G + GV GDR +Y N P+++IA A + A+ VP+
Sbjct: 36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV-VPVNPM 94
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN---------VSSS 186
+ + + +A V P + + L + +++ V +
Sbjct: 95 NREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAW 154
Query: 187 QKKEAEELGVSCF---SWEEFLQLGTLDCELPPKKKT----NISTIMYTSGTTGEPKGVV 239
+ E ++ +W+E L L P T +++ + YTSGTTG PKG +
Sbjct: 155 LRAEPPLQALAPGGVVAWKE-----ALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCM 209
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
T++ ++A + T E + LPL H+
Sbjct: 210 HTHRTVMANAVGSVLWSNSTP-----ESVVLAVLPLFHV 243
|
Length = 546 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 68/204 (33%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
I+YTSGTTG PKGVVL+ +AI A++ ++ + + T +D LPL H++ ++
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-----DDVLVHGLPLFHVHGLVLG 187
Query: 285 THCIHKGCSIGFWR--GDVRYLMEDIQE-------LKPTMFSGVPRVYDRIYTGISNKIS 335
+G R + E T++ GVP V+ R I+
Sbjct: 188 V--------LGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSR----IAADPE 235
Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
+ AL G RL ++SG+A L
Sbjct: 236 AARALR----------------------------------------GARL--LVSGSAAL 253
Query: 396 PIHVEEFLRVTSGAPLTQGYGMVE 419
P+ V + L +G + YGM E
Sbjct: 254 PVPVFDRLAALTGHRPVERYGMTE 277
|
Length = 471 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 67/205 (32%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
I++TSGTTG PKGV LT++ ++A ++ + +T D + +PL HI+ I+
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLT-----PSDRCLNVMPLFHIHGLIVS 61
Query: 285 T-HCIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
+ G S+ FW +DI + + T +S VP
Sbjct: 62 LLATLLAGGSVVCPPKFSASKFW--------DDIAKYRVTWYSAVP-------------- 99
Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
+ + L + A K P L F IR S +AP
Sbjct: 100 ----TIHQILLKTA---------KPNPGKPPP----RLRF--IR-----------SASAP 129
Query: 395 LPIHVEEFLRVTSGAPLTQGYGMVE 419
LP V + L G P+ + YGM E
Sbjct: 130 LPPAVLDRLEKRFGVPVLEAYGMTE 154
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ A + +++ G PGDR + +++ A C LY
Sbjct: 24 LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGC---------LY---- 69
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
A A+ + ++ +IL R +++ + V ++ +
Sbjct: 70 AGAIAVPAPPPRRLGRHLA--RLAAILADAGAR------AVLTTSAVLAALRAALAAPAA 121
Query: 197 SCFSW---EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
++ L D PP +I+ + YTSG+TG PKGV++T+ ++A ++
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLA---NLR 178
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
+ G +D S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 24/174 (13%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI-----IAMEACNSQAITYV 130
T+ E Y R SA+ RG+ GD + N P + + M +
Sbjct: 42 RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT- 100
Query: 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSI---LSCLPRCCLYLKTIVSFANVSSSQ 187
L A ++ F++ H E + V L+ LP K +V +V +
Sbjct: 101 ----RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG----PKPLV--IDVDDPE 150
Query: 188 KKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
+G +E FL G LP + I+ + YTSGTTG PKGVV
Sbjct: 151 YPGGRFIGA--LDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVV 201
|
Length = 545 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 40/200 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+YQ+++ +R+ GV R + N +W+IA AC I +P+
Sbjct: 3 LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE-AEELGV 196
A + ++N A ++S ++S LG
Sbjct: 60 AQQTQHLLNDAGAD------------------------LLISDDPDAASALHTPFATLGE 95
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ P + + I YTSG+TG+PKGV L+ A+ S+ +
Sbjct: 96 DLYIA-------LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148
Query: 257 VVTGKVCSEEDTYFSFLPLA 276
+ E + + LPLA
Sbjct: 149 AIL-----EPERHLCLLPLA 163
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
L K + + I++TSG+ G PKGVVL+++ ++A + + + + ED L
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVI-----DLNTEDVLLGAL 193
Query: 274 PLAHIY 279
PL H +
Sbjct: 194 PLFHAF 199
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 220 TNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
+ + I+YTSGTTG PKGV+LT+ Q + A L+ + +D + LPL HI
Sbjct: 81 VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLL------GLRPDDVLLTPLPLFHI 134
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY- 279
+++ I+YTSG+TGEPKGV+L+++ + A S+ Q +T E+D + LP + Y
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELT-----EDDRILAVLPFSFDYG 57
Query: 280 -DQIIETHCIHKGCSIGFWRGDVRYLM-----EDIQELKPTMFSGVPRVY 323
Q++ T G + + R+ + + + + T F+GVP +
Sbjct: 58 LSQLL-TAFRVGGTLV----LESRFAFPRDVLKHLAKERITGFAGVPTTW 102
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 9e-09
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ DAA R +A+ GV PGD N E+++ AC P+
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 138 ANAVEFIINHAEVSIAFV 155
+ FI+ A + FV
Sbjct: 62 ERELGFILRQARARVLFV 79
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 36/251 (14%)
Query: 41 GLESPWQFFC----DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS 96
GL W C D A RI N+ + R V GP V TY +++D A++ A+
Sbjct: 3 GLMQDWPLLCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDR 58
Query: 97 RGVNPGDRCGIYGSNCPE----WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152
G+ GDR N W M AI + + L + +IINHAE +
Sbjct: 59 DGIKLGDRVATIAWNTWRHLEAWYGIM---GIGAICHT-VNPRLFPEQIAWIINHAEDRV 114
Query: 153 AFVQENKIP---SILSCLPRCCLYLKTIVSF---ANVSSSQKKEAEELGVSCFSWEEFLQ 206
+P I LP ++ V A++ + K A ++EE++
Sbjct: 115 VITDLTFVPILEKIADKLPS----VERYVVLTDAAHMPQTTLKNA-------VAYEEWIA 163
Query: 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266
D + + + YTSGTTG+PKGV+ ++++ V L + + G +
Sbjct: 164 EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAA-- 220
Query: 267 DTYFSFLPLAH 277
DT +PL H
Sbjct: 221 DTMLPVVPLFH 231
|
Length = 542 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 57/171 (33%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
L+Y E+ + + R + + GV PGDR G+ PE ++A+ A YVPL+
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAF 59
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
G A+E+ + H+ V N +
Sbjct: 60 GPKAIEYRLGHSG--------------------------AKVVVTNAA------------ 81
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
G LD ++ MYTSGTTG PKGV + A+ A
Sbjct: 82 ---------NRGKLD--------DDLFAQMYTSGTTGLPKGVPVPLNALAA 115
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 55/215 (25%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV----VTGKVCSEED 267
P K+ +++ IMY+SGTTG KGVVLT++ ++A V ++FV + ++
Sbjct: 190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV----ELFVRFEASQYEYPGSDN 245
Query: 268 TYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR 325
Y + LP+ HIY + + G +I R D +++ I K T F VP +
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL-- 303
Query: 326 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 385
AL+KK KG+ +L SL
Sbjct: 304 ------------MALTKK-------------AKGV----CGEVLKSLK------------ 322
Query: 386 QAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGMVE 419
+ GAAPL +++F++ QGYGM E
Sbjct: 323 -QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTE 356
|
Length = 560 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
TY E+ + R + + + GV PGDR + NCPE++ A A N VP+ L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 137 GANAVEFIINHAEVSIAFVQENKI 160
+ I++H+ + V I
Sbjct: 63 RGEELAHILDHSGARLIVVDTAAI 86
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY+E++D A RF + +R+ GV+PGDR + + PE + A AC V L L
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70
Query: 138 ANAVEFIINHAE 149
+E I++ +
Sbjct: 71 PQDLEHILDDSG 82
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 64/270 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY ++ A+ R + + + GV PGDR + PE + A ++PL
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+++ I AE P+++ C P FA +S K A G
Sbjct: 89 LAELDYFIGDAE-----------PALVVCDPAN---------FAWLS----KIAAAAGAP 124
Query: 198 CFSWEEFLQLGTLDC-----------------ELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+ TLD E P+ +++ I+YTSGTTG KG +L
Sbjct: 125 --------HVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAML 176
Query: 241 T--NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI-HKGCSIGFW 297
+ N A L F + +D LP+ H + + T+ G S+ +
Sbjct: 177 SHGNLLSNALTLVDYWRF-------TPDDVLIHALPIFHTHGLFVATNVALLAGASM-IF 228
Query: 298 RGDVRYLMEDIQELKP--TMFSGVPRVYDR 325
++ + + L P T+ GVP Y R
Sbjct: 229 LP--KFDPDAVLALMPRATVMMGVPTFYTR 256
|
Length = 504 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
LTY E+ + R A+ + G+ PGDR + E+++ A VPL +
Sbjct: 11 SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 137 GANAVEFIINHAEVSIAF 154
A + +I++ ++ S+
Sbjct: 71 PAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 45/200 (22%), Positives = 71/200 (35%), Gaps = 59/200 (29%)
Query: 228 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-H 286
T GTTG PK +++ VA + + D + LPL H+ I+
Sbjct: 10 TGGTTGAPKLARHSHRNEVANAWMAALLSGLG-----PGDVLLNGLPLFHVGGAIVTGLA 64
Query: 287 CIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
+ +G ++ +R V + ++ + T+ S VP V A
Sbjct: 65 PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL--------------AA 110
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
L PL D+ + S +R L+GAAPLP+ V
Sbjct: 111 L-----------------------LQVPLGDADI-SSLR--------YALTGAAPLPVEV 138
Query: 400 EEFLRVTSGAPLTQGYGMVE 419
+G P+ +GYGM E
Sbjct: 139 ARRFEAVTGVPVVEGYGMTE 158
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 59/269 (21%), Positives = 98/269 (36%), Gaps = 39/269 (14%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT--- 135
T+ + Y R SA+ R + PG + N P +A VP+
Sbjct: 47 TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP--------AMYEAHFGVPMAGAVVN 98
Query: 136 -----LGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVS 184
L A + F++ H++ + V + IL+ + ++ + +
Sbjct: 99 CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPT 158
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCEL---PPKKKTNISTIMYTSGTTGEPKGVVLT 241
K LG +E+FL+ G D E PP + + YTSGTT PKGVVL
Sbjct: 159 CDPKSLQYALGKGAIEYEKFLETG--DPEFAWKPPADEWQSIALGYTSGTTASPKGVVLH 216
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH----IYDQIIETHCIHKGCSIGFW 297
++ LS ++ + +E Y LP+ H + + C G +I
Sbjct: 217 HRGAYLMALSNALIWGM-----NEGAVYLWTLPMFHCNGWCFTWTLAALC---GTNICLR 268
Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
+ + + I T F P V + I
Sbjct: 269 QVTAKAIYSAIANYGVTHFCAAPVVLNTI 297
|
Length = 567 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+I+ + YT GTTG KG +LT++ +VA + Q TGK+ + + LPL HI+
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268
Query: 281 QIIETHCIHK--GCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
K GC+ I R D+ ++++++ + T F+GV + ++ G+ N
Sbjct: 269 LTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGV----NTLFNGLLN---- 319
Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
P D + FS ++ GG + S A
Sbjct: 320 -----------------------------TPGFDQIDFSSLKMTLGGGMAVQRSVA---- 346
Query: 397 IHVEEFLRVTSGAPLTQGYGMVE 419
E + +VT G L + YG+ E
Sbjct: 347 ---ERWKQVT-GLTLVEAYGLTE 365
|
Length = 560 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 33/200 (16%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
Q A++ P L V +V L+Y E+ A R + + GV P G
Sbjct: 516 QLIEAQARQHPERPAL----VFGEQV-----LSYAELNRQANRLAHVLIAAGVGPDVLVG 566
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
I E ++ + A YVPL + + ++++ + V + Q +L+
Sbjct: 567 IAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQ----SHLLAQ 622
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
LP A + S E +L + + L P N++ ++
Sbjct: 623 LPVP----------AGLRSLCLDEPADL------LCGYSGHNP-EVALDPD---NLAYVI 662
Query: 227 YTSGTTGEPKGVVLTNQAIV 246
YTSG+TG+PKGV +++ A+
Sbjct: 663 YTSGSTGQPKGVAISHGALA 682
|
Length = 3956 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + A R + + + G GD +YG P+ A+ AC YVPL +
Sbjct: 17 LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQP 76
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL 164
A + I+ A + + + IL
Sbjct: 77 AERIAKILEAAGPAALVADPDDLAYIL 103
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
++YTSGTTGEPKGV+ T+ ++AEV S + +T +D PLAHI
Sbjct: 98 LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLT-----PDDVVLMPSPLAHI 146
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 23/205 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E+ + R +R+ G+ GD I N PE+ A + Y P+ L
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 138 ANAVEFIINHAEVSIAFVQENKIPS---ILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
A + +I++ + + V + + + LP L + A +
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV-------------AGPV 118
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV--LTNQAIVAEVLSV 252
+ + + + P +T + ++Y+SGTTG PKG+ L E +
Sbjct: 119 P----GFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP-DEAPGM 173
Query: 253 DQMFVVTGKVCSEEDTYFSFLPLAH 277
+ G + Y S PL H
Sbjct: 174 MLALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
T+ ++ DA+ R +A+R GV GDR G+Y PE IA A VPL G
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILS 165
+AVE + + + + P+IL
Sbjct: 68 DAVEHRLRDSGARVLVTDGSDDPAILI 94
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
TY E AA A+ + GV GDR + N E++ C VP+ L
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
+E I+ ++ + V+ + ++ + P L L + +S
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVSVPAG----- 159
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQM 255
+S L + + + I+YTSGTTG KGV + Q S + +
Sbjct: 160 --WSTAPLPPLDAPAPAAAVQP-GDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL 216
Query: 256 FVVTGKVCSEEDTYFSFLPLAHI 278
+ +D ++ LPL H
Sbjct: 217 EIG------ADDVLYTTLPLFHT 233
|
Length = 542 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 64 GRKVSDGKVGPYVW------LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117
R V +G+ G + L+Y E+ R G+A+R GV +R + + ++ I
Sbjct: 11 DRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPI 70
Query: 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI 177
A I V L L A+ +++ + + FV +P I + L + +L+
Sbjct: 71 AFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-HLEHR 129
Query: 178 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKG 237
V + + + AE L E+F + + + + +Y+SG+TG PKG
Sbjct: 130 VVVGRPEAGEVQLAELLATES---EQF--------KPAATQADDPAFWLYSSGSTGMPKG 178
Query: 238 VV 239
VV
Sbjct: 179 VV 180
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTL 136
TY+E+ + + +F + ++ GV GDR I+ PE + + A + AI PL++
Sbjct: 74 YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI-VGPLFEAF 132
Query: 137 GANAVEFIINHAE----VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
AV + +E ++ + E K L L K ++ E
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL-------KHVLLVG--------EDV 177
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
E G + ++ + + ++ + + + + YTSG+TG+PKGV+ + A++
Sbjct: 178 EEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232
|
Length = 570 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 26/207 (12%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY + AA R + + ++G+ PGDR E+ I AC VPL +
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 139 NAVEFIIN--HAEVSIA---FVQENKIPSILSC---LPRCCLYLKTIVSFANVSSSQKKE 190
+ +++N A++ A F Q + IL LP L+ IV K
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGV-------DKL 159
Query: 191 AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
A S S + + ++ +++TSGT G PKGV+LT+ I+A
Sbjct: 160 APAT--SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-- 215
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAH 277
++ + + +D + PL H
Sbjct: 216 --ERAYCARLNLTW-QDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 31/227 (13%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G + +Y E+ + A R + +R+ G+ PGD + +++ A AC VP+
Sbjct: 35 GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVSSSQK-- 188
N A K+ +I L P + A V++
Sbjct: 95 ----AVPPTYDEPNAAV--------AKLRNIWELLGSPVI------LTDAALVAALAGLR 136
Query: 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
A + + EE D L P + + + ++ TSG+TG PK VVLT++ I+A
Sbjct: 137 TRAGLEALRVLAIEELRSAPP-DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILAR 195
Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCS 293
Q+ T +D +++PL H+ I+ H ++ GC
Sbjct: 196 SAGTVQVNGFT-----PDDVSLNWMPLDHV-GGIVMLHLRDVYLGCQ 236
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E++ RF +A++S GV GDR IY PE +AM AC
Sbjct: 99 ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143
|
Length = 637 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
P K + +TI+++SG+ GEPKGV+L++ I++ + + +F + +D S L
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR-----NDDVILSSL 830
Query: 274 PLAH 277
P H
Sbjct: 831 PFFH 834
|
Length = 1146 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 32/183 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L Y E+ A R A+ RGV P G+ E ++A+ A YVPL
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A + +++ + V + Q + LP A + V
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHLGRK----LPL---------------------AAGVQVL 631
Query: 198 CF----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
+W E EL P+ N++ ++YTSG+TG+PKG ++A+ + +
Sbjct: 632 DLDRPAAWLEGYSEENPGTELNPE---NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688
Query: 254 QMF 256
Q +
Sbjct: 689 QAY 691
|
Length = 5163 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
I+ I ++SG+TGEPKGV+LT++ ++ + + ++ + ED + S++PL H
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEA-----IIEAAEITSEDVFLSWMPLTH 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E+ + R ++ +GV GDR +Y N P+++IA A VP+
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 138 ANAVEFIINHAEVSIAFV 155
+E I+N + + V
Sbjct: 62 EAELEHILNDSGARVLIV 79
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y E+ A R +R+RGV P R I E ++A+ A YVPL D
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPL-D--- 2084
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
N+ +A++ E+ S A + +Q+ E L
Sbjct: 2085 -------PNYPAERLAYMLED--------------------SGAALLLTQRHLLERLPLP 2117
Query: 195 -GVSCFSWEEFLQLGTLDCELPPKK--KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
GV+ + + P + N++ ++YTSG+TG PKGV +++ A+VA +
Sbjct: 2118 AGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA 2177
Query: 252 VDQMFVVTGKVCSEEDTYFSF 272
+ + ++ C + FSF
Sbjct: 2178 AGERYELSPADCELQFMSFSF 2198
|
Length = 5163 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
L+Y E+ + + + + +R+ GV PGDR G+ + + A+ A YVPL +
Sbjct: 12 TLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSY 71
Query: 137 GANAVEFIINHAEVSI 152
A +++++ AE ++
Sbjct: 72 PAERLQYMLEDAEPAL 87
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 61/214 (28%)
Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
P +++ +T GTTG PK T+ VA + + DT F LP
Sbjct: 208 RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG-----PGDTVFCGLP 262
Query: 275 LAHIYDQI-IETHCIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRI 326
L H+ + + +G + +RG + + ++ + SGVP VY
Sbjct: 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVY--- 319
Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
AL + +P + + SL ++
Sbjct: 320 -----------AALLQ-----------------VPVD--GHDISSLRYA----------- 338
Query: 387 AMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGMVE 419
L GAAPLP+ V F T G + +GYG+ E
Sbjct: 339 --LCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTE 369
|
Length = 632 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 23/253 (9%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN-SQAITYVPLYDTLG 137
TY++ A + A+ + GV PGDR G N + A + S A+ + + L
Sbjct: 41 TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT-INPRLF 99
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I+NHAE +P + + P+C + + ++ + A +
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC----PNVKGWVAMTDAAHLPAGSTPLL 155
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVD 253
C+ E + D + P + S++ YTSGTTG PKG + ++++ V L D
Sbjct: 156 CY--ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP-D 212
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
M S D +P+ H+ + G + G D + L E I+
Sbjct: 213 AM------GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEA 265
Query: 311 LKPTMFSGVPRVY 323
+ T +GVP V+
Sbjct: 266 ERVTFSAGVPTVW 278
|
Length = 539 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
DG V + TY E+ R S + + G+ GDR GIY PE ++A+ A
Sbjct: 2 DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQE 157
VP++ G +AV + AE + +
Sbjct: 59 AVPIFSGFGPDAVATRLQDAEAKVLITAD 87
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 12/39 (30%), Positives = 28/39 (71%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
+++ ++YTSG+TG PKGV++ ++ +V + + + + +T
Sbjct: 94 DLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLT 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTYQ++ + + R + ++ R + +YG P ++A Y+P+ ++
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +E II A + ++ ++ S ++AE G
Sbjct: 86 SERIEMIIEAAGPE-LVIHTAELSIDAVGTQI-------------ITLSALEQAETSG-- 129
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
G + + K N I YTSG+TG PKGV
Sbjct: 130 ----------GPVSFDHAVKGDDNYYII-YTSGSTGNPKGV 159
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
T+ E+ + + R + ++ GV GDR + PE + C ++P LG
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 139 NAVEFIINHAE 149
+ + + A
Sbjct: 62 KDIRYRLERAG 72
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 29/195 (14%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y E+ A R + RGV P G+ E ++ + A YVPL
Sbjct: 3083 LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYP 3142
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ + + Q + + + L + E
Sbjct: 3143 EERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDL---------------DRGDENYA-- 3185
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
E + T+ N++ ++YTSG+TG+PKGV + + A+ + + Q +
Sbjct: 3186 ----EANPAIRTM--------PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG 3233
Query: 258 VTGKVCSEEDTYFSF 272
+ + T FSF
Sbjct: 3234 LGVGDRVLQFTTFSF 3248
|
Length = 5163 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY ++ + + + + S + ++G PE + Y+P+ +
Sbjct: 28 LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSP 87
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A +E II A+ S+ E IL +++ +
Sbjct: 88 AERIEMIIEVAKPSLIIATEELPLEILGI---------PVITLDELK------------- 125
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
+ F D + K N I +TSGTTG+PKGV
Sbjct: 126 ----DIFATGNPYDFDHAVKGDDNYYII-FTSGTTGKPKGV 161
|
Length = 503 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E++ RF + ++S GV GDR IY PE IAM AC
Sbjct: 89 ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 90/380 (23%), Positives = 137/380 (36%), Gaps = 103/380 (27%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLY- 133
+TY E+ + + + ++SRG+ G R I N ++ +A+ A V PLY
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 134 ---------DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK-TIVSFANV 183
D+ GA A+ + N A + + + ++ L K IV+F V
Sbjct: 109 PRELEHQLKDS-GAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNF--V 165
Query: 184 SSSQKK--EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
KK A L + + L G + +++ + YT GTTG KG L
Sbjct: 166 VRRVKKMVPAWSLP-GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATL 224
Query: 241 TNQAIVAEVLS--------------VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
++ IVA VL DQ+ V LPL HI+ T
Sbjct: 225 LHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA------------LPLYHIFAL---TV 269
Query: 287 CIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
C +G G L+ + I+ELK P V + +Y + N
Sbjct: 270 C----GLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV-NTLYNALLN------- 317
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
P D L FSK+ A GG + A+ A
Sbjct: 318 --------------------------NPDFDKLDFSKLIVANGGGM-AVQRPVA------ 344
Query: 400 EEFLRVTSGAPLTQGYGMVE 419
E +L +T G P+T+GYG+ E
Sbjct: 345 ERWLEMT-GCPITEGYGLSE 363
|
Length = 557 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E+Y RF + ++S GV GDR IY PE IAM AC
Sbjct: 79 ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 11/182 (6%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+T+ E+ +A+R+ GV PGDR Y N P+ ++AM A S + G
Sbjct: 115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFG 174
Query: 138 ANAVEFIINHAEVSIAFVQE-----NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
A V E + F + K + L T+ + ++ +E E
Sbjct: 175 ARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE 234
Query: 193 ELGV-SCFSWEEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
+ E+F Q L E P + I+++SGTTG PK +V + + +
Sbjct: 235 APKIDGALDLEDFTAAAQAAELVFEQLP--FDHPLWILFSSGTTGLPKCIVHSAGGTLVQ 292
Query: 249 VL 250
L
Sbjct: 293 HL 294
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 67 VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
+ G+ GP L++ E+ +A+R+ GV PGDR Y N PE ++AM A S
Sbjct: 104 IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATAS 161
|
Length = 655 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC----SEEDTYFSFLPLA 276
+ I +TSGTTG PKGV +++ A++ + L+ K+ E+D Y PL
Sbjct: 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLA---------KIAIVGYGEDDVYLHTAPLC 223
Query: 277 HI 278
HI
Sbjct: 224 HI 225
|
Length = 563 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
+ ++YTSGTTG PKG ++ + V + D ++ +PL H
Sbjct: 90 AALIYTSGTTGLPKGCAISWRR-----TLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAAF 144
Query: 283 IET-HCIHKGCSIG---------FWRGDVR----YLMEDIQELKPTMFSGVPRVYDR 325
+ +C+ G ++ FW+ DVR +++ + EL + + P YDR
Sbjct: 145 LGLCYCLGSGGTLCLSRKFSASQFWK-DVRDSEATIIQYVGELCRYLLATPPSPYDR 200
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 42/238 (17%), Positives = 77/238 (32%), Gaps = 70/238 (29%)
Query: 46 WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
+A R P+ + G R+ LTY+E+ A R + + + G+ PGD
Sbjct: 18 GDLLAANAARHPDRTAVVDGPRR-----------LTYRELDAAVDRLAAGLLALGIGPGD 66
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
R + N E++I A V A+ + +E + A++ ++
Sbjct: 67 RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSE-AKAYIIADRFSG- 124
Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
+A ++ +E ++ QL
Sbjct: 125 --------------FDYAALARELLEELPDVA--------LFQL---------------- 146
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV--TGKVC--SEEDTYFSFLPLAH 277
+ GTTG PK + T+ D ++ + + C Y + LP AH
Sbjct: 147 ----SGGTTGLPKLIPRTH---------NDYLYSARASAEACGLDPGTVYLAVLPAAH 191
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 31/198 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ A R A+ +RGV P GI E ++ + A YVPL
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ + ++ Q + +L LP ++S E+
Sbjct: 4637 RERLAYMMEDSGAALLLTQSH----LLQRLP----------IPDGLASLALDRDED---- 4678
Query: 198 CFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
WE F P + N++ ++YTSG+TG PKGV +++ ++V + + +
Sbjct: 4679 ---WEGF-------PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGE 4728
Query: 255 MFVVTGKVCSEEDTYFSF 272
+ +T + FSF
Sbjct: 4729 RYELTPDDRVLQFMSFSF 4746
|
Length = 5163 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+YQE+ + + RF + + S GV G+R PE +A Y PL+ G
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 138 ANAV 141
+
Sbjct: 61 PEPI 64
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 32/204 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRC--GIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
+++E + +A+R+R ++P G+ N PE+ + + A I V L T
Sbjct: 29 TSWREHIRGSAARAAALRAR-LDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
A+ I HA+ + + + P V NV S
Sbjct: 88 RRGAALARDIAHADCQLVLTESAHAELLDGLDPG--------VRVINVDSPA-------- 131
Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIM--YTSGTTGEPKGVVLTNQAIVAEVLSVD 253
W + L D E P + M +TSGT+G+PK V T++ + + + +
Sbjct: 132 -----WADELA-AHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
Q F + +D + +PL H
Sbjct: 186 QRFGL-----GPDDVCYVSMPLFH 204
|
Length = 529 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 204 FLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-- 255
+++ LD + P+ + + + YTSG+T P GV+++++ ++A + +Q+
Sbjct: 138 VIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA---NFEQLMS 194
Query: 256 --FVVTGKVCSEEDTYFSFLPLAH 277
F TG V + T S+LP H
Sbjct: 195 DYFGDTGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
I YTSGTTG PKG + T++ ++A + +T + +FLPL H+
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLT-----PDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 22/187 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T+ + YD R +++ S + D + N P A P+ L
Sbjct: 40 FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99
Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFAN-VSSSQKKEAEE 193
A ++ I+ HA+ I FV + P +L L L V F + + ++ +EE
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEE 159
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM---------YTSGTTGEPKGVVLTNQA 244
L +E +Q G E P + I YTSGTT +PKGVV++++
Sbjct: 160 L-----DYECLIQRG----EPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRG 210
Query: 245 IVAEVLS 251
LS
Sbjct: 211 AYLSTLS 217
|
Length = 579 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 58/206 (28%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+++ + YT GTTG KG +LT++ +VA +L + + + + + LPL HIY
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL--MGSNLNEGCEILIAPLPLYHIY- 264
Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNK 333
H C G+ L+ + ++EL FSG + G++
Sbjct: 265 ----AFTFH--CMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG--------FVGLNT- 309
Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
LF + N+A LD FS L+ LSG
Sbjct: 310 ----------LF------------VALCNNEAFRKLD---FS--------ALKLTLSGGM 336
Query: 394 PLPIHVEEFLRVTSGAPLTQGYGMVE 419
L + E + +G + +GYGM E
Sbjct: 337 ALQLATAERWKEVTGCAICEGYGMTE 362
|
Length = 562 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSV---------DQMFVVT 259
++YTSG+TG+PKGV ++++A+V +LS+ D++ VT
Sbjct: 98 VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVT 141
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 55/240 (22%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY EV + + A+ + G+ PGD + N P ++
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFL-------------------- 43
Query: 137 GANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKK---EAE 192
+ + AF+ N + S+L C RCC + +V+ + + ++
Sbjct: 44 ---WIWLGLAKLGCPTAFLNTNIRSGSLLHCF-RCC-GARVLVADPELLEAVEEILPALR 98
Query: 193 ELGVSCF---------SWEEFLQL--GTLDCELPPKKKTNISTIM------YTSGTTGEP 235
+GV F L D E P + +I YTSGTTG P
Sbjct: 99 AMGVRVFYLSHTSPPEGVISLLAKVDAASD-EPVPASLRSGVSIRSTALYIYTSGTTGLP 157
Query: 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSI 294
K +++ VL M + G + +D ++ LPL H ++ CI G ++
Sbjct: 158 KAARISHL----RVLQCSGMLSLCG--VTADDVVYTTLPLYHSSGALLGIVGCIGLGATL 211
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 54/197 (27%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ D + + ++ GV GD IY E IAM AC +G
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR-----------IG 169
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL------------YLKTIVSFANVSS 185
A H+ V F E+ I+ C P+ + LK IV A S
Sbjct: 170 A-------VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDES 222
Query: 186 SQKKEAEELGVSCFS---------------------WEEFLQLGTLDCELPPKKKTNIST 224
+ K +G+ C + W++ + CE+ +
Sbjct: 223 A--KNGVSVGI-CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLF 279
Query: 225 IMYTSGTTGEPKGVVLT 241
++YTSG+TG+PKGV+ T
Sbjct: 280 LLYTSGSTGKPKGVLHT 296
|
Length = 666 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIV 246
I++TSG+TG PKGV++ AIV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)
Query: 83 VYDAAIRFGSAM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV 141
+ I + M +RG+ GD + N ++ A + ++P+ L A+ V
Sbjct: 32 EFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEV 91
Query: 142 EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201
+I+ A + V E + L IV A + ++
Sbjct: 92 AYILGDAGAKLLLVDEE-----FDAIV--ALETPKIVIDAAAQADSRR------------ 132
Query: 202 EEFLQLGTLDC-ELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
L G L+ T++ +MYTSGTT PKGV+ +
Sbjct: 133 ---LAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHS 170
|
Length = 497 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
T+++++D R + +RS GV GDR IY E AM AC
Sbjct: 85 YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129
|
Length = 629 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
++YTSG+TG+PKGVV+T++ I + + + + D F +A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIR-----PGDRVLQFASIA 150
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
LTY++++ F SA+R+ GV GDR IY E + AM AC
Sbjct: 84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC 128
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
LTY+E+ + A R +R+RGV PGD I PE ++A+ A+ YVPL
Sbjct: 13 LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAI-----LAVLKAGAAYVPL 67
Query: 133 YDTLGANAVEFIINHAEVSIAFVQ 156
A + +++ + +
Sbjct: 68 DPAYPAERLAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 22/213 (10%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G +Y+E+ R + GV GD N E+ AC PL
Sbjct: 49 GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPL 108
Query: 133 YDTLGANAVEFIINHAEVSI--------AFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ F++NHA+ + F + S LP L+ +V V
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP----ALRQVV----VI 160
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
++ + + ++ + P +++ ++YTSGTTGEPKGV+ T
Sbjct: 161 DGDGDDSFDRVLMTPERDDTPDAAAI-LAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANT 219
Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
+ + + + + D P+AH
Sbjct: 220 LFSNIHPYAERLEL-----GGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 32/206 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + + +RGV P R + N + +IA+ A + + L
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 138 ANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEEL 194
+ +I E++ A + + + +I L L +V L
Sbjct: 89 PAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLV--------------GL 134
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
G + E PP++ + + YTSGTTG PKG V+ +A + VL
Sbjct: 135 GEPESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL---- 182
Query: 255 MFVVT--GKVCSEEDTYFSFLPLAHI 278
F+ T G + +PL H+
Sbjct: 183 -FMSTQAGLRHGRHNVVLGLMPLYHV 207
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 272
+ + + I++TSG+ G PKGVVL+++ ++A V ++ S ED F+
Sbjct: 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA------NRAQVAARIDFSPEDKVFNA 840
Query: 273 LPLAH 277
LP+ H
Sbjct: 841 LPVFH 845
|
Length = 1140 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y+++ A +A+++R GDR + + P+++ A C + VP Y
Sbjct: 41 LSYRDLDLRARTIAAALQARAS-FGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP--- 96
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
E + QE + I PR L T+ + + EEL +
Sbjct: 97 ----------PESARRHHQERLLSIIADAEPRLLL---TVADLRD----SLLQMEELAAA 139
Query: 198 CFSWEEFLQLGTLDCEL------PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
+ E L + TLD L P + +I+ + YTSG+T PKGV +++ +VA
Sbjct: 140 --NAPELLCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQL 197
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAH 277
+ F G + +D S+LPL H
Sbjct: 198 IRHGF---GIDLNPDDVIVSWLPLYH 220
|
Length = 4334 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
L+Y E A R+ A+R+ GV GD + N PE+++A A
Sbjct: 4 LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALA 49
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 67/294 (22%), Positives = 108/294 (36%), Gaps = 56/294 (19%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + + + + GV GD + N +++A+ A + + L +T G
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAG-KVGARIILLNT-G 132
Query: 138 ANAVEFIINHAEVSI-----AFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
+ + AEV+ A V +++ +LS LP L+ +
Sbjct: 133 FSGPQL----AEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG----------NPD 178
Query: 193 ELGVSCFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVV---LTNQAIVAE 248
+ S + E L PK ++ TSGTTG PKG + A +A
Sbjct: 179 DDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG 238
Query: 249 VLS-----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVR 302
+LS + ++ + F AH+ + G ++ R D
Sbjct: 239 LLSRVPFRAGETTLLPAPM-------FHATGWAHL--TLAMAL----GSTVVLRRRFDPE 285
Query: 303 YLMEDIQELKPTMFSGVPRVYDRI----------YTGISNKI--SSGGALSKKL 344
+EDI + K T VP + RI Y S KI SG ALS +L
Sbjct: 286 ATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPEL 339
|
Length = 549 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 49/180 (27%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY+E+ + + R RS G+ GD I+ N ++ A + Y + L
Sbjct: 25 VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84
Query: 138 ANAVEFIIN----------HAEVSIAFVQENKIPSILSCLPRCCLYLKT-----IVSFAN 182
+I++ A++ +A + P + L + V +A
Sbjct: 85 PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRL----VLDGDGELEGFVGYAE 140
Query: 183 VSSSQKK---EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
+ E LG ++Y+SGTTG PKG+
Sbjct: 141 AVAGLPATPIADESLGTD---------------------------MLYSSGTTGRPKGIK 173
|
Length = 511 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 54/244 (22%)
Query: 51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
++A R P+ L + + + ++Y E+ A R+ +RGV GD +
Sbjct: 45 EAAARHPDRPAL----LFEDQS-----ISYAELNARANRYAHWAAARGVGKGDVVALLME 95
Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFI------------INHAEVSIAFVQEN 158
N PE++ A LGA V + +N + V E
Sbjct: 96 NRPEYLAAWLGLAK-----------LGA-VVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143
Query: 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKK 218
+ + + + +E+ P
Sbjct: 144 -------LVEAF----EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPAS 192
Query: 219 KTNIS---TIMY--TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
++ ++ T Y TSGTTG PK V+++ L F ++ + +D + L
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSH----MRWLKAMGGFGGLLRL-TPDDVLYCCL 247
Query: 274 PLAH 277
PL H
Sbjct: 248 PLYH 251
|
Length = 600 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++ E+ A R + + GV PGD + N + A A VP+
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I+ + + + + + S LP L ++ + ++++ + L
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 198 CFS--WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
+ WE +L + PP + +++YTSGTTG PKGV
Sbjct: 131 AGAIDWEGWLAQQEP-YDGPPVPQP--QSMIYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVA 247
I++TSG+TG+PKGV +++ + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLAS 124
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 225 IMYTSGTTGEPKGVVLT 241
I+YTSGTTG+PKG V T
Sbjct: 105 IIYTSGTTGKPKGTVHT 121
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 47 QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
+ A+R P+ + G LTY E+ A R + +R+ GV P R
Sbjct: 3 ELVEAQAERTPDAIAVVCGDES-----------LTYAELNRRANRLAARLRAAGVGPESR 51
Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156
G+ P+ ++A+ A YVPL + +I+ A +
Sbjct: 52 VGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 37/149 (24%)
Query: 222 ISTIMYTSGTTGEPKGVV-------LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
I+ +YTSGTTG+PKGV+ +A E+L + D FS
Sbjct: 93 IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-----------QPGDRIFSSSK 141
Query: 275 LAHIYDQIIETHCIHKGCSIGFW------RGDVRYLMEDIQELKPTMFSGVPRVYDRIYT 328
L Y + + G +++ + +PT+ GVP +Y +
Sbjct: 142 LFFAYGLG---NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLE 198
Query: 329 G----------ISNKISSGGALSKKLFEF 347
+ +S+G AL L E
Sbjct: 199 SGAGSAPLFRSVRLCVSAGEALPAGLAER 227
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 45/186 (24%)
Query: 76 VW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
VW L Y E++ A R +R +GV P I P+ ++ + A YVP
Sbjct: 1151 VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
L A + +++ + V + Q +L LP+ A
Sbjct: 1211 LDPDYPAERLAYMLADSGVELLLTQS----HLLERLPQ---------------------A 1245
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKT-------NISTIMYTSGTTGEPKGVVLTNQA 244
E GVS + L +L + P + N++ ++YTSG+TG+PKGV T+ A
Sbjct: 1246 E--GVSA------IALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAA 1297
Query: 245 IVAEVL 250
+ AE L
Sbjct: 1298 L-AERL 1302
|
Length = 4334 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L Y+E+ + +R++ V+ G R + N PE +++ AC V L
Sbjct: 42 LRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLP 101
Query: 138 ANAVEF---IINHAEVSIA---FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
A+E I + A +A + + +P L +P + + + + S A
Sbjct: 102 IAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLA 161
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EV 249
G+ D +++TSGTTGEPK V+L N+ A ++
Sbjct: 162 GNAD-----------QGSEDP----------LAMIFTSGTTGEPKAVLLANRTFFAVPDI 200
Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
L + + VT V +T +S LP HI
Sbjct: 201 LQKEGLNWVTWVV---GETTYSPLPATHI 226
|
Length = 540 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 225 IMYTSGTTGEPKGVV 239
I+YTSG+TG+PKGVV
Sbjct: 230 ILYTSGSTGKPKGVV 244
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
+++ ++YTSGTTGEPKGV+ T ++A ++ + + +D P+AH
Sbjct: 198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA-----DDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 29/194 (14%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G + LTY E + A+ RG++ I N E + A + Y P+
Sbjct: 65 GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPV 124
Query: 133 ---YDTLGAN--AVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYLKTIVSFANVSS 185
Y + + + ++ + F + ++ + +P ++ +
Sbjct: 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPAD---VEVVAV------ 175
Query: 186 SQKKEAEELGVSCFSWEEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT- 241
G + + L +D I+ ++TSG+TG PK V+ T
Sbjct: 176 ----RGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
Query: 242 -----NQAIVAEVL 250
NQ ++A+
Sbjct: 232 RMLCANQQMLAQTF 245
|
Length = 614 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 17/58 (29%)
Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVC------SEEDTYFSFLPLAH 277
+TSGTTG PK VLT+ QM FV+T + +E+D PL+H
Sbjct: 170 FTSGTTGRPKAAVLTH----------GQMAFVITNHLADLMPGTTEQDASLVVAPLSH 217
|
Length = 528 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 419 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.93 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.81 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.76 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.74 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.71 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.63 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.44 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.37 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 98.91 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 98.88 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 97.79 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.4 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 92.9 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 89.42 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 88.64 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 80.44 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-54 Score=418.96 Aligned_cols=395 Identities=42% Similarity=0.714 Sum_probs=350.3
Q ss_pred CcceecCcc--CCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCC
Q 014742 23 GPVYRCIYA--KDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (419)
Q Consensus 23 ~~~~~~~~~--~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (419)
+..||+... ...++..+....|+++.|.+.+..+|+.+++.....++ ..++++++||.|+.+++..++..|+..|++
T Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~ 131 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK 131 (691)
T ss_pred CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence 367888777 45666667889999999999999999999998763223 567889999999999999999999999999
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEe-CCChhhHhhcCcc-CCCCccEEE
Q 014742 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIPSILSCLPR-CCLYLKTIV 178 (419)
Q Consensus 101 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~~~ 178 (419)
+++.|+|+..|++||++..+||...|.+.|||..+++++.+.+++.+++..+||+| +...+.+++.... ..+.++.++
T Consensus 132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI 211 (691)
T KOG1256|consen 132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII 211 (691)
T ss_pred CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999 4556666555543 367899999
Q ss_pred EecCCChhhHHHHHHhCceeeeHHHHHhcC-CCCCCC-CCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhh
Q 014742 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (419)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~ 256 (419)
.++.........+...+..+.+|+++.+.+ ...... .+..+++.|.|+|||||||+||||++||+|+...+.......
T Consensus 212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~ 291 (691)
T KOG1256|consen 212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS 291 (691)
T ss_pred EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence 999999888888888889999999999988 333333 477899999999999999999999999999999765432222
Q ss_pred hhcC-ccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 014742 257 VVTG-KVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335 (419)
Q Consensus 257 ~~~~-~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 335 (419)
.... .....+|+++|++||.|++..++-+..+..|+++.+.++|+..+.+.|++.+||.+.++|.+|++|.+.+++.+.
T Consensus 292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~ 371 (691)
T KOG1256|consen 292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ 371 (691)
T ss_pred hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence 1111 123347999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhh-hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeee
Q 014742 336 SGGALSKKLFEFAYNYKL-GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG 414 (419)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~ 414 (419)
+.+.+++.+|+||+.+|+ ..+..|..+. ..+.+|.++|+++++.+|+++|.+++|++|+++++.++++..+|++|+++
T Consensus 372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG 450 (691)
T KOG1256|consen 372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG 450 (691)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence 999999999999999999 6788887665 78999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 014742 415 YGMVE 419 (419)
Q Consensus 415 YG~tE 419 (419)
||+||
T Consensus 451 YGlTE 455 (691)
T KOG1256|consen 451 YGLTE 455 (691)
T ss_pred ccccc
Confidence 99998
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=436.33 Aligned_cols=418 Identities=76% Similarity=1.280 Sum_probs=342.2
Q ss_pred CCCceeEEccCCCCCCCCCCCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeH
Q 014742 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTY 80 (419)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty 80 (419)
|-++||+.+++-+|.+...|.++++||++.....+...+....|+.++|.+.++.+|+++|+.+....+++.++++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty 80 (660)
T PLN02861 1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTY 80 (660)
T ss_pred CCccceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEH
Confidence 56789999999999988999999999999877777666677889999999999999999999753111333456678999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh
Q 014742 81 QEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (419)
Q Consensus 81 ~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (419)
+|+.++++++|++|.++|+++||+|+++++|+++|+++++||+++|++++||++.++.+++.++++.++++++|++....
T Consensus 81 ~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~ 160 (660)
T PLN02861 81 KEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160 (660)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred hhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEe
Q 014742 161 PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~ 240 (419)
..+..........++.++.+++............+....+|+++..............++++++|+|||||||.||||++
T Consensus 161 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~l 240 (660)
T PLN02861 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240 (660)
T ss_pred HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEE
Confidence 55443332222246677777643221111111112335678777654422222334568999999999999999999999
Q ss_pred echhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecc
Q 014742 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP 320 (419)
Q Consensus 241 sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P 320 (419)
||++++..+......+........++|++++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|
T Consensus 241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP 320 (660)
T PLN02861 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVP 320 (660)
T ss_pred ecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeech
Confidence 99999988776554431111124678999999999999998876668999999999877999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHH
Q 014742 321 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 400 (419)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~ 400 (419)
.+|+.|++.+...+.+.+.+++.+|++|+++++..++.|.......+..+.++++++|+.+|+++|.+++||+++++++.
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~ 400 (660)
T PLN02861 321 RVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE 400 (660)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence 99999999988888999999999999999999988877654444567788899999999999999999999999999986
Q ss_pred HHHHHhhCC-ceeeeccCCC
Q 014742 401 EFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 401 ~~~~~~~~~-~v~~~YG~tE 419 (419)
+ |.+.++. +++++||+||
T Consensus 401 ~-~~~~~~~~~l~~~YG~TE 419 (660)
T PLN02861 401 E-FLRVTSCSVLSQGYGLTE 419 (660)
T ss_pred H-HHHHHcCCCeeEecchhh
Confidence 5 5555664 7999999998
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=417.29 Aligned_cols=415 Identities=52% Similarity=0.945 Sum_probs=331.0
Q ss_pred ceeEEccCCCCCCCCCCCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHH
Q 014742 4 TYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEV 83 (419)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el 83 (419)
+.-+-+.+.+.+.++.+.++++||++.....++.......|+.++|.+.++.+||++|+.+....+++.+++.++||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el 85 (666)
T PLN02614 6 KFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEV 85 (666)
T ss_pred eeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHH
Confidence 45677788888899999999999999777666543355679999999999999999999853100222234567899999
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhH
Q 014742 84 YDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163 (419)
Q Consensus 84 ~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 163 (419)
.++++++|++|++.|+++||+|+++++|+++++++++||+++|+++||+++.++.+++.++++.++++++|++.+....+
T Consensus 86 ~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 165 (666)
T PLN02614 86 YDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISEL 165 (666)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655544
Q ss_pred hhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCC-CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeec
Q 014742 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242 (419)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh 242 (419)
..........++.++.+++............+....+++++..... .........++++++|+|||||||.||||++||
T Consensus 166 ~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth 245 (666)
T PLN02614 166 FKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245 (666)
T ss_pred HHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEec
Confidence 3333222223566776654321111111111233567887765431 112223346789999999999999999999999
Q ss_pred hhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchH
Q 014742 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV 322 (419)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~ 322 (419)
+|+...+......+......+..+|++++.+|++|.+++...+..+..|+++++.++++..+++.|++++||+++++|++
T Consensus 246 ~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~ 325 (666)
T PLN02614 246 ESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRV 325 (666)
T ss_pred HHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHH
Confidence 99998876654432111124678899999999999999876666788999999987799999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHH
Q 014742 323 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402 (419)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~ 402 (419)
|+.+++.++..+.+.+.+++.++++|++++.+.++.|..+....+..+.+.++++++.+|++||.+++||+++++.+ .+
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~ 404 (666)
T PLN02614 326 LDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ES 404 (666)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HH
Confidence 99999888888888888899999999999888777665444556778888999999999999999999999999876 45
Q ss_pred HHHhh-CCceeeeccCCC
Q 014742 403 LRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 403 ~~~~~-~~~v~~~YG~tE 419 (419)
|.+.+ +++++++||+||
T Consensus 405 ~~~~~~~~~i~~~YG~TE 422 (666)
T PLN02614 405 FLRVVACCHVLQGYGLTE 422 (666)
T ss_pred HHHHhcCCCEEeeCchHh
Confidence 55556 589999999998
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=412.02 Aligned_cols=415 Identities=46% Similarity=0.860 Sum_probs=332.1
Q ss_pred eeEEccCCCCCCCCCCCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHH
Q 014742 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVY 84 (419)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~ 84 (419)
|++++.+.....+..|+++++||+......++..+....|+.++|.+.++.+|+++|+.+....++..+++.++||.|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~ 83 (660)
T PLN02430 4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVY 83 (660)
T ss_pred eeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHH
Confidence 55666544444467888999999988666665556678999999999999999999997541112334456678999999
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHh
Q 014742 85 DAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164 (419)
Q Consensus 85 ~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 164 (419)
++++++|.+|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++........
T Consensus 84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~ 163 (660)
T PLN02430 84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL 163 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876443333
Q ss_pred hcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCC-CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeech
Q 014742 165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243 (419)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~ 243 (419)
.......+.++.++.+++............+....+|+++...+. .........++++++|+|||||||.||||++||+
T Consensus 164 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~ 243 (660)
T PLN02430 164 EPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHE 243 (660)
T ss_pred hhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecH
Confidence 222222345677777765332111111112334567888776542 1222233467899999999999999999999999
Q ss_pred hHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHH
Q 014742 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY 323 (419)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~ 323 (419)
++..++.............++++|++++.+|++|.++....+.++..|+++++...++..+++.|.+++||++.++|.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~ 323 (660)
T PLN02430 244 AVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF 323 (660)
T ss_pred HHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHH
Confidence 99988766432211001246678999999999999999876667899999998877899999999999999999999999
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHH
Q 014742 324 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403 (419)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~ 403 (419)
+.+.+...+.+...++.++.+|+++++.++..++.|.......+..+.+.++++++.+|+++|.+++||+++++++.+++
T Consensus 324 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~ 403 (660)
T PLN02430 324 ERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL 403 (660)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH
Confidence 99999988888888899999999999999998887654444566788899999999999999999999999999997777
Q ss_pred HHhhCCceeeeccCCC
Q 014742 404 RVTSGAPLTQGYGMVE 419 (419)
Q Consensus 404 ~~~~~~~v~~~YG~tE 419 (419)
+...+.+++++||+||
T Consensus 404 ~~~~~~~i~~~YG~TE 419 (660)
T PLN02430 404 RVTSCAFVVQGYGLTE 419 (660)
T ss_pred HHhcCCCeeeecchhh
Confidence 6643578999999998
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=413.46 Aligned_cols=401 Identities=37% Similarity=0.645 Sum_probs=330.1
Q ss_pred eeEEccCCCCCCCCCCCCCcceecCccCCCCCC---CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHH
Q 014742 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLE---SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQ 81 (419)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~ 81 (419)
|+++++ .+..++++.+||+...+...-+ .+....++.++|+.+++.+|+++|+......++..++++.+||+
T Consensus 8 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~ 82 (651)
T PLN02736 8 YSVVLP-----EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYG 82 (651)
T ss_pred cceeCC-----CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHH
Confidence 777765 6678889999998866633322 23556799999999999999999995420003333456789999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh
Q 014742 82 EVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161 (419)
Q Consensus 82 el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 161 (419)
|+.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+
T Consensus 83 el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~ 162 (651)
T PLN02736 83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLN 162 (651)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEe
Q 014742 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240 (419)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~ 240 (419)
.+..... ..+.++.+++.+.............+....+|+++.... ..........++++++|+|||||||.||||++
T Consensus 163 ~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~l 241 (651)
T PLN02736 163 TLLSCLS-EIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVL 241 (651)
T ss_pred HHHHHhh-cCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEE
Confidence 5544433 235566777665322111111111223456788877654 12222334567999999999999999999999
Q ss_pred echhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecc
Q 014742 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP 320 (419)
Q Consensus 241 sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P 320 (419)
||+++..++......+ ++.++|++++.+|++|.+++..++.++..|+++++.++++..+++.|++++||+++++|
T Consensus 242 sh~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP 316 (651)
T PLN02736 242 THGNLIANVAGSSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVP 316 (651)
T ss_pred ecHHHHHHHHHHHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecch
Confidence 9999999888866655 77889999999999999999888888999999999888999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHH
Q 014742 321 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 400 (419)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~ 400 (419)
.+++.+.+.+...+.+.+.+++.++++++..+...+..|.. ..+.++.++++.+++.+|+++|.+++||+++++++.
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~ 393 (651)
T PLN02736 317 RLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVM 393 (651)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHH
Confidence 99999999988888999999999999999998777765532 234567788999999999999999999999999999
Q ss_pred HHHHHhhCCceeeeccCCC
Q 014742 401 EFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 401 ~~~~~~~~~~v~~~YG~tE 419 (419)
+++++.+|++++++||+||
T Consensus 394 ~~~~~~~g~~~~~~YG~TE 412 (651)
T PLN02736 394 EFLRICFGGRVLEGYGMTE 412 (651)
T ss_pred HHHHHHhCCCeEEEechHH
Confidence 9999989999999999998
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=407.87 Aligned_cols=387 Identities=24% Similarity=0.406 Sum_probs=310.3
Q ss_pred CCCCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-
Q 014742 18 GKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS- 96 (419)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~- 96 (419)
....+|.+||..+.....+. ....|+.++|...++.+|+++|+.+. + ...+++.+||+|+.++++++|++|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~ 111 (746)
T PTZ00342 38 TNENESSVYCMKDHKKKSSL--YVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTY 111 (746)
T ss_pred CCCCCCCceecCchhhcccc--cccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 34566779998886655222 45889999999999999999999853 1 12235789999999999999999997
Q ss_pred --CCCCCC-----------CeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhH
Q 014742 97 --RGVNPG-----------DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163 (419)
Q Consensus 97 --~g~~~g-----------d~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 163 (419)
.|+++| |+|+|+++|+++|+++++||+++|+++||++++++.+++.++|++++++++|++.+..+.+
T Consensus 112 ~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l 191 (746)
T PTZ00342 112 EGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGL 191 (746)
T ss_pred hhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHH
Confidence 499998 9999999999999999999999999999999999999999999999999999987777666
Q ss_pred hhcCccCCCCccEEEEecCCChhh------------------H-------------------------------------
Q 014742 164 LSCLPRCCLYLKTIVSFANVSSSQ------------------K------------------------------------- 188 (419)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~------------------------------------- 188 (419)
..... ..+.++.+++++...... .
T Consensus 192 ~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (746)
T PTZ00342 192 LERKN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270 (746)
T ss_pred HHhhc-cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHH
Confidence 55433 345677888876522100 0
Q ss_pred --HHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCC
Q 014742 189 --KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (419)
Q Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~ 266 (419)
......+.....++++..............+++++.|+|||||||.||||++||+|+++.+....... .......
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~ 347 (746)
T PTZ00342 271 LKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNP 347 (746)
T ss_pred HHHHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCC
Confidence 00001112233455544332222223345679999999999999999999999999998876643321 0012345
Q ss_pred cEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHH
Q 014742 267 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE 346 (419)
Q Consensus 267 d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (419)
|++++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+|++|.+.....+.+.+..++.+|+
T Consensus 348 d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~ 427 (746)
T PTZ00342 348 KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVK 427 (746)
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 89999999999999988778899999999987799999999999999999999999999999888888888889999999
Q ss_pred HHHHhhhhhhccCCCCCCchhhHHHH--HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 347 FAYNYKLGNMKKGMPQNKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+|+..+....... ..+.++.+ .++++|+.+|++||.+++||+++++++.++|+..+|++++++||+||
T Consensus 428 ~a~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTE 497 (746)
T PTZ00342 428 KILSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTE 497 (746)
T ss_pred HHHHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCc
Confidence 9999987754422 23334433 68899999999999999999999999999999989999999999998
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=361.69 Aligned_cols=393 Identities=34% Similarity=0.613 Sum_probs=336.0
Q ss_pred CCCCCcceecCccCCCCCCCC-CCCCCHHHHHHHHHHhCCCCCceeeeec--------cCCC------CCceeEeeHHHH
Q 014742 19 KPSGGPVYRCIYAKDGLLESP-AGLESPWQFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVWLTYQEV 83 (419)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~-~~~~tl~~~l~~~a~~~pd~~ai~~~~~--------~~~~------~~~~~~~Ty~el 83 (419)
.+.++.+|||.-...++...+ ....|+.+++...++.+.++.++....+ +|++ -+++.++||.|+
T Consensus 16 n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev 95 (678)
T KOG1180|consen 16 NEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEV 95 (678)
T ss_pred CCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHH
Confidence 457888999998665555555 5689999999999999999999854322 2442 678889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCe-EEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhh
Q 014742 84 YDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS 162 (419)
Q Consensus 84 ~~~~~~la~~L~~~g~~~gd~-V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 162 (419)
..++..++++|...|++++++ |+|+++.+.+|+.+++||++.+.++|-+...+..+-+.+-|.+++.+.||++.+.+..
T Consensus 96 ~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~k 175 (678)
T KOG1180|consen 96 YERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPK 175 (678)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHH
Confidence 999999999999999998877 9999999999999999999999999999999999999999999999999999999986
Q ss_pred HhhcCccCCCCccEEEEecCCCh----hhHHHHHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCe
Q 014742 163 ILSCLPRCCLYLKTIVSFANVSS----SQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKG 237 (419)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 237 (419)
+...+. ....++.+|.++.... ..-.........+.+++++...+ ....++.+..++|+|+|+|||||||.|||
T Consensus 176 l~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKG 254 (678)
T KOG1180|consen 176 LKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKG 254 (678)
T ss_pred HHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCce
Confidence 655544 4478999999985321 11111122346789999999988 33234444478999999999999999999
Q ss_pred EEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC----CH-----HHHHHHh
Q 014742 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DV-----RYLMEDI 308 (419)
Q Consensus 238 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~----~~-----~~~~~~i 308 (419)
|+++|+|+++.+....... ..+++.|+++.++||.|++.+.+-+.+++.|+++...+- |. +..--.+
T Consensus 255 Vml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~ 330 (678)
T KOG1180|consen 255 VMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDL 330 (678)
T ss_pred EEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCcc
Confidence 9999999999998876654 267899999999999999999999999999999987642 11 1222356
Q ss_pred hhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEE
Q 014742 309 QELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 388 (419)
Q Consensus 309 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v 388 (419)
..+|||++.++|.+|.++.+...+.+.+.+.+.+.+|..||..|+..++.. -+..+.++.++|+++|.+.|++||.+
T Consensus 331 ~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~---g~~s~~ld~lVFkKIr~~lGG~lR~~ 407 (678)
T KOG1180|consen 331 TELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN---GPGSPLLDALVFKKIRALLGGNLRYI 407 (678)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc---CCchhhHHHHHHHHHHHHhCCceEEE
Confidence 789999999999999999999999999999999999999999999998831 35688999999999999999999999
Q ss_pred EEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 389 LSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 389 ~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++||+|+++++.+++..++.+++.++||+||
T Consensus 408 LsGGapLS~dtQrF~nic~C~Pv~qGYGLTE 438 (678)
T KOG1180|consen 408 LSGGAPLSPDTQRFMNICFCCPVLQGYGLTE 438 (678)
T ss_pred EeCCCCCCHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999998
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=380.48 Aligned_cols=366 Identities=32% Similarity=0.586 Sum_probs=289.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++...+.+.++.+|+..++... ..+.++.+||+|+.+++..+|.+|++.|+..||+|+|++.|+++|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~ 88 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL 88 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4678899999999999998888765 46778899999999999999999999999779999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+.+|++.||+.+..+++++.++|+++++++||++..............++.+.......+.-.... ...........
T Consensus 89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 167 (613)
T COG1022 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAV-EAKALVLEVFP 167 (613)
T ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhcc-chhhccccccc
Confidence 99999999999999999999999999999999999996555444433332222212111111000000 00000000001
Q ss_pred HHH----HHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCcc-CCCCcEEEEecCh
Q 014742 201 WEE----FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSFLPL 275 (419)
Q Consensus 201 ~~~----~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl 275 (419)
+.. ............+..++|+|.|+|||||||.||||++||+|+.+++..+...+ . .+++|++++++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfLPl 242 (613)
T COG1022 168 DEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFLPL 242 (613)
T ss_pred cccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeCcH
Confidence 111 11111122233466799999999999999999999999999999999988877 5 8899999999999
Q ss_pred HHHHHHHHH-HHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 276 AHIYDQIIE-THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 276 ~h~~g~~~~-l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.|++..++. ...++.|.++.. ..+++.+++.+++++||.+.++|.+|+.+.+.+.+.+.+.+..++.+|.||+..+..
T Consensus 243 aHi~Er~~~~~~~~~~g~~~~~-~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~ 321 (613)
T COG1022 243 AHIFERAFEGGLALYGGVTVLF-KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK 321 (613)
T ss_pred HHHHHHHHHHHHHhhcceEEEe-cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 999999874 344444444443 449999999999999999999999999999999999999999999999999988644
Q ss_pred hhc---cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMK---KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..+ -+..........+.++|+++|+.+|+++|++++||+++++++..+++.+ |++++++|||||
T Consensus 322 ~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTE 388 (613)
T COG1022 322 KISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTE 388 (613)
T ss_pred HHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccc
Confidence 332 1111222333489999999999999999999999999999999999996 999999999999
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=393.36 Aligned_cols=390 Identities=32% Similarity=0.554 Sum_probs=311.1
Q ss_pred ceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeec--------cCC------CCCceeEeeHHHHHHHHHHH
Q 014742 25 VYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKV--------SDG------KVGPYVWLTYQEVYDAAIRF 90 (419)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~--------~~~------~~~~~~~~Ty~el~~~~~~l 90 (419)
+|||+..+...........|+.++|.+.++.+||++|+..... .++ ..+++.++||+|+.++++++
T Consensus 40 ~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~l 119 (696)
T PLN02387 40 AIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNF 119 (696)
T ss_pred ceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHH
Confidence 4999986633333335678999999999999999999953210 011 12566789999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccC
Q 014742 91 GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC 170 (419)
Q Consensus 91 a~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~ 170 (419)
|++|.+.|+++||+|+++++|+++|+++++||+++|++++||++.++.+++.++++.++++++|++.+....+.+... .
T Consensus 120 A~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~-~ 198 (696)
T PLN02387 120 ASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISS-Q 198 (696)
T ss_pred HHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhh-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999877666655433 3
Q ss_pred CCCccEEEEecCCChhhHHH-HHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHH
Q 014742 171 CLYLKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248 (419)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~ 248 (419)
.+.++.++.+++........ .........+|+++...+ ..........++++++|+|||||||.||||++||++++.+
T Consensus 199 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~ 278 (696)
T PLN02387 199 LETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVAT 278 (696)
T ss_pred cCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHH
Confidence 35677888887543211100 011223456788776654 2122223346799999999999999999999999999988
Q ss_pred hhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC----C-----HHHHHHHhhhhcCeEEEec
Q 014742 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTMFSGV 319 (419)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~----~-----~~~~~~~i~~~~~t~l~~~ 319 (419)
+......+ ..+.++|++++.+|++|++++...+.++..|+++.+... + ...+++.+++++||++.++
T Consensus 279 ~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~v 354 (696)
T PLN02387 279 VAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAV 354 (696)
T ss_pred HHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEeh
Confidence 87754432 246788999999999999999876667778888776432 1 2345678999999999999
Q ss_pred chHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCC--CCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCH
Q 014742 320 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM--PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397 (419)
Q Consensus 320 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~ 397 (419)
|.++++|.+.....+.+.+.+.+.+|++++..++..++... .....+..++.+.++++++.+|+++|.+++||+++++
T Consensus 355 P~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~ 434 (696)
T PLN02387 355 PAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSG 434 (696)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCH
Confidence 99999999988888888889999999999998877664211 0122456789999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceeeeccCCC
Q 014742 398 HVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 398 ~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++.++++..+|++++++||+||
T Consensus 435 ~~~~~~~~~~g~~v~~~YG~TE 456 (696)
T PLN02387 435 DTQRFINICLGAPIGQGYGLTE 456 (696)
T ss_pred HHHHHHHHHcCCCeeEeechhh
Confidence 9999998888999999999998
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=381.18 Aligned_cols=401 Identities=28% Similarity=0.502 Sum_probs=312.1
Q ss_pred CceeEEccCCCCCCCCCCCCCcceecCccCC----CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeec----------c
Q 014742 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKD----GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKV----------S 68 (419)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~----------~ 68 (419)
+.++++++ +...++.+++||+..... .+........|+.++|...++.+||++|+.+... .
T Consensus 30 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~ 104 (700)
T PTZ00216 30 GPQNVPVP-----GTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDA 104 (700)
T ss_pred CCcceecC-----CCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccC
Confidence 44677765 334566788999865432 2222223567999999999999999999987410 0
Q ss_pred CCC--------CCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhH
Q 014742 69 DGK--------VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANA 140 (419)
Q Consensus 69 ~~~--------~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~ 140 (419)
++. .++++++||.|+.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~ 184 (700)
T PTZ00216 105 DGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184 (700)
T ss_pred CCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHH
Confidence 111 124578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCC----CCCCCCC
Q 014742 141 VEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCELPP 216 (419)
Q Consensus 141 l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 216 (419)
+.++++.++++++|++......+.............++.+++.... .........+|+++...+. .......
T Consensus 185 l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (700)
T PTZ00216 185 LAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIP 260 (700)
T ss_pred HHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCC
Confidence 9999999999999998766555544332211112245555442211 0111234677888876541 1111233
Q ss_pred CCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEE
Q 014742 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 296 (419)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl 296 (419)
..++++++|+|||||||.||||++||+|+.+++..+...+........++|++++++|++|.+++......+..|+++++
T Consensus 261 ~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~ 340 (700)
T PTZ00216 261 ENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF 340 (700)
T ss_pred CCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE
Confidence 46789999999999999999999999999988877554331101123678999999999999998776666888888776
Q ss_pred eCCCHHHHHH-------HhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhH
Q 014742 297 WRGDVRYLME-------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369 (419)
Q Consensus 297 ~~~~~~~~~~-------~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (419)
. ++..+.+ .+++++||++.++|.+++.+.+.....+...+.+++.+|++|+..++..+..|. ..+.+
T Consensus 341 ~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 414 (700)
T PTZ00216 341 G--SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYW 414 (700)
T ss_pred C--CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchH
Confidence 3 4555554 688999999999999999999998888888889999999999999988777652 34567
Q ss_pred HHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 370 ~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+...|+.+++.+|+++|.+++||+++++++.++++..++ +++++||+||
T Consensus 415 ~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TE 463 (700)
T PTZ00216 415 NEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTE 463 (700)
T ss_pred HHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCccc
Confidence 888999999999999999999999999999999988878 9999999998
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=319.77 Aligned_cols=323 Identities=20% Similarity=0.312 Sum_probs=270.6
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q 014742 31 AKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110 (419)
Q Consensus 31 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~ 110 (419)
+.++-.+.|....|+++.|+..++..||+.|.++. ..+ .++||+|+...++.+|.+|.+.|+++||+|++..|
T Consensus 38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp 110 (596)
T KOG1177|consen 38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP 110 (596)
T ss_pred ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence 33455566788999999999999999999999986 222 56999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC-----hhhHhhcCc------------cCCCC
Q 014742 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK-----IPSILSCLP------------RCCLY 173 (419)
Q Consensus 111 n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~------------~~~~~ 173 (419)
|+.+|+...+||+++|.+.+++||.+...++++.|++.+++.+|+.... .+..++.+. +.++.
T Consensus 111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~ 190 (596)
T KOG1177|consen 111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE 190 (596)
T ss_pred ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999998643 223333322 23355
Q ss_pred ccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCCC------CCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHH
Q 014742 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247 (419)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~ 247 (419)
+.+++..+++.. -.+.+.+.+++..+... .......+++.+.|.|||||||.|||+.+||.|+++
T Consensus 191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N 261 (596)
T KOG1177|consen 191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN 261 (596)
T ss_pred ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence 667777764332 12456677776655211 112234579999999999999999999999999999
Q ss_pred HhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHH
Q 014742 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYD 324 (419)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~ 324 (419)
++......+ ++.+++++++..|++|.+|... ++++|..|++++++.. ++.+.+++|+++++|.++++|+++.
T Consensus 262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~ 336 (596)
T KOG1177|consen 262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV 336 (596)
T ss_pred hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence 999977766 8888889999999999999776 8999999999999754 9999999999999999999999999
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH
Q 014742 325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404 (419)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~ 404 (419)
.|++ .+....++++ ++|.++.||+++|+++.+.+.
T Consensus 337 Dlln-------------------------------------~~~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv 371 (596)
T KOG1177|consen 337 DLLN-------------------------------------IPQKQQVDLS--------SLRKGVIGGAPVSPELLKLIV 371 (596)
T ss_pred HHhc-------------------------------------chhhccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence 9986 4445556665 889999999999999999999
Q ss_pred HhhCCc-eeeeccCCC
Q 014742 405 VTSGAP-LTQGYGMVE 419 (419)
Q Consensus 405 ~~~~~~-v~~~YG~tE 419 (419)
....+. +...||+||
T Consensus 372 ~~~~m~~i~v~YG~TE 387 (596)
T KOG1177|consen 372 NQMNMKDIAVAYGLTE 387 (596)
T ss_pred HhhCceeeEEEeeccc
Confidence 966553 888999998
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=338.95 Aligned_cols=304 Identities=21% Similarity=0.242 Sum_probs=250.0
Q ss_pred HHHHHHH-hCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHHHHHc
Q 014742 48 FFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQ 125 (419)
Q Consensus 48 ~l~~~a~-~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~lA~~~~ 125 (419)
.++++.. ..+|+.|+++. +..... +.+||.||.+.++++|+.|++ .|+ +||+|++++|+.++.++++|||+++
T Consensus 14 ~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~ri 88 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARI 88 (528)
T ss_pred hhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 5677766 35789999987 443334 899999999999999999986 678 9999999999999999999999999
Q ss_pred CCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccC--CCCccEEEEecCCChhhHHHHHHhCceeeeHHH
Q 014742 126 AITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC--CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (419)
Q Consensus 126 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (419)
|++++|+.+.++++.+...+..+++++||+++............. ...+..+++..... ..|.+
T Consensus 89 GAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~~~ 154 (528)
T COG0365 89 GAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWYDE 154 (528)
T ss_pred CCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccHHH
Confidence 999999999999999999999999999999987655332211100 00011133333221 45777
Q ss_pred HHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH
Q 014742 204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (419)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (419)
................+|+++++|||||||+||||+++|+.+........... +.+.++|++++..++.|++|+..
T Consensus 155 ~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~----~~~~~~Dv~w~~ad~GW~~g~~~ 230 (528)
T COG0365 155 AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH----GDLLPGDRFWNSSDPGWIYGLWY 230 (528)
T ss_pred HhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHh----hCCCCCCEEEeCCCchhhhCchH
Confidence 76665444445557899999999999999999999999998877776654422 36779999999999999999998
Q ss_pred -HHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 284 -ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 284 -~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
++.+|..|+++++.++ +++.+++.|+++++|++++.|+.+++|.+.
T Consensus 231 ~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~----------------------------- 281 (528)
T COG0365 231 SVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKL----------------------------- 281 (528)
T ss_pred HHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhc-----------------------------
Confidence 8899999999999876 389999999999999999999999999762
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.. .+.++++ +||.+.++|||++++.++++.+.+|++|.+.||+||
T Consensus 282 -------g~-~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTE 326 (528)
T COG0365 282 -------GL-GEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTE 326 (528)
T ss_pred -------CC-cccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccc
Confidence 11 4556665 999999999999999999999999999999999998
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=361.52 Aligned_cols=363 Identities=19% Similarity=0.271 Sum_probs=290.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCch
Q 014742 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP 113 (419)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~ 113 (419)
.+|.. ....|+.++|.+.++++|+++++... . ..++++++||+|+.++++++|.+|++.|+++||+|+++++|++
T Consensus 419 ~~~~~-~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~ 493 (1452)
T PTZ00297 419 EYNPL-AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASR 493 (1452)
T ss_pred cCCCc-ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 34444 34569999999999999999998632 1 1234568999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhH-HHHH
Q 014742 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAE 192 (419)
Q Consensus 114 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 192 (419)
+|+++++||+.+|++++|+++ +.+++.++++.+++++||++.+....+.+... ..++.++++++...... ....
T Consensus 494 Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~ 568 (1452)
T PTZ00297 494 NIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVAR 568 (1452)
T ss_pred HHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccc
Confidence 999999999999999999975 46799999999999999999877776655432 36888888864211000 0000
Q ss_pred HhCceeeeHHHHHhcCC--CCCCCCCCCCCceEEEEe---CCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCc
Q 014742 193 ELGVSCFSWEEFLQLGT--LDCELPPKKKTNISTIMY---TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED 267 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~---TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d 267 (419)
..+..+.+|+++...+. .........+++++.|+| ||||||.||||++||+|++.++..+.... ......++|
T Consensus 569 ~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D 646 (1452)
T PTZ00297 569 DLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKH 646 (1452)
T ss_pred cCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCC
Confidence 11234677999987662 111123346788999996 99999999999999999999998865421 001345789
Q ss_pred EEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 268 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 268 ~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
++++.+||+|+++....+.++..|+++.+ .+++.+++.|++++||+++++|.+|+.+.+.+++++...+++++++|++
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~ 724 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER 724 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999997777788999999874 3799999999999999999999999999999998888888999999999
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccC--CCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA--PLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~--~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
|++++.+..+.| ......++.+.|+++|+.+|+++|.+++||+ +++..+.. ++++..+||+||
T Consensus 725 A~~~k~~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE 789 (1452)
T PTZ00297 725 AFQLRSRLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLRE 789 (1452)
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEE
Confidence 999987766654 2345678999999999999999999999984 44432222 688999999987
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=341.64 Aligned_cols=312 Identities=27% Similarity=0.400 Sum_probs=253.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.+.|..+++.+|+++|+.+. +.. .++||.||.++++++|.+|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45789999999999999999999986 432 15999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCcee-
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC- 198 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (419)
+||+++|++++|+|+.++..++.++++.+++++++++....... ............+......... .
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~ 148 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALL-EAVAEALPVVLVVLLVGDADDR-----------LP 148 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHH-HHHhccCCcceEEEeccccccc-----------cc
Confidence 99999999999999999999999999999999999998843333 3222222222222222222110 0
Q ss_pred eeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCcc--CCCCcEEEEecCh
Q 014742 199 FSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV--CSEEDTYFSFLPL 275 (419)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl 275 (419)
.++++..... ..........++++++++|||||||.||||++||+|+..++..+...+ . ++++|++++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl 223 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL 223 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence 2455553333 122222226789999999999999999999999999999988887777 6 8889999999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEeC---CCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 276 AHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~ivl~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
+|.+|+.. ++.++..|+++++.+ ++++.++..+.++++|+++++|+++..+++.
T Consensus 224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~---------------------- 281 (534)
T COG0318 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDN---------------------- 281 (534)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhC----------------------
Confidence 99999997 556699999999987 3999999999999999999999999998762
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC-CceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE 419 (419)
+.....+++ .++|.+++||+++++++++++++.|+ ..++++||+||
T Consensus 282 ---------------~~~~~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE 328 (534)
T COG0318 282 ---------------PEKDDDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTE 328 (534)
T ss_pred ---------------CccCccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccc
Confidence 111111111 13999999999999999999999997 57999999998
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=333.72 Aligned_cols=317 Identities=19% Similarity=0.134 Sum_probs=248.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.-++.++|.+.++.+|+++|+++. + +.+||.||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la 76 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG----N-----RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA 76 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC----C-----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 567899999999999999999853 2 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.+++++++++...............+.+..++..++........ ......+
T Consensus 77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~ 152 (563)
T PLN02860 77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF----LNSFLTT 152 (563)
T ss_pred HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccc----hhhcccc
Confidence 999999999999999999999999999999999987653322222111223334444443321100000 0001112
Q ss_pred HHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+++.... ..........++++++++|||||||.||||.++|.++..++......+ +++.+|++++.+|++|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g 227 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG 227 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence 2221111 001111233578999999999999999999999999988776655444 7888999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|.++..|++.....
T Consensus 228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------------- 281 (563)
T PLN02860 228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKS-------------------------- 281 (563)
T ss_pred HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhh--------------------------
Confidence 9888899999999999876 9999999999999999999999999987632110
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
....++ +++|.+++||+++++++.++|++.| +.++++.||+||
T Consensus 282 ---------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE 325 (563)
T PLN02860 282 ---------MTWKVF--------PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE 325 (563)
T ss_pred ---------hccccc--------cceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccc
Confidence 000111 3899999999999999999999988 789999999998
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.21 Aligned_cols=326 Identities=16% Similarity=0.209 Sum_probs=244.1
Q ss_pred CCHHHHHHHHHH-hCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~a~-~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+...++|+++++ .+|+++|+++. +.+.+..+.+||.||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA 164 (666)
T PLN02654 88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA 164 (666)
T ss_pred eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 344667777776 48999999875 33344457899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhh---------HhhcCcc---CCCCccEEEEecCCChhhHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILSCLPR---CCLYLKTIVSFANVSSSQKK 189 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 189 (419)
|+++|++++|+++.++.+++..+++.++++++|+++..... +...... .......++...........
T Consensus 165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
T PLN02654 165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE 244 (666)
T ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence 99999999999999999999999999999999998764321 1111000 00111222222221100000
Q ss_pred HHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHH-hhhhhhhhhhcCccCCCCcE
Q 014742 190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDT 268 (419)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~ 268 (419)
...-.......|+++........+.....++++++|+|||||||.||||+++|++++.. .......+ +++++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d~ 319 (666)
T PLN02654 245 DTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTDV 319 (666)
T ss_pred ccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCcE
Confidence 00000001123555543222122223356799999999999999999999999998643 34444444 7888999
Q ss_pred EEEecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHH
Q 014742 269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342 (419)
Q Consensus 269 ~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (419)
+++..|++|.+|+.. ++.+|+.|+++++.++ ++..+++.|+++++|+++++|++++.|.+.-
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------ 387 (666)
T PLN02654 320 YWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDG------------ 387 (666)
T ss_pred EEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhC------------
Confidence 999999999999876 7788999999999863 7899999999999999999999999986520
Q ss_pred HHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
.......+++ +||.++++|+++++++++++.+.+| +++.+.||+||
T Consensus 388 -----------------------~~~~~~~~l~--------~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE 436 (666)
T PLN02654 388 -----------------------DEYVTRHSRK--------SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 436 (666)
T ss_pred -----------------------ccccccCChh--------heeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccc
Confidence 0011222333 8999999999999999999999997 68999999998
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=331.82 Aligned_cols=310 Identities=18% Similarity=0.174 Sum_probs=252.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
.++.++|.+.++.+||++|+++. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999864 2 47999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (419)
+++|++++|+++.++.+++.++++.++++++|++.+....+.+.. .....+..++...+.... ...+...++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 191 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALP-PDLGRLRAWGGNPDDDEP-------SGSTDETLD 191 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhc-cccccceEEEEecCcccc-------CCcCcccHH
Confidence 999999999999999999999999999999999987666543321 111222232222211110 012345677
Q ss_pred HHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHH
Q 014742 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (419)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (419)
++...... .......++.++++|||||||.||+|.++|.++...+......+ .+..+|++++..|++|.+|+.
T Consensus 192 ~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~ 264 (549)
T PRK07788 192 DLIAGSST--APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGWA 264 (549)
T ss_pred HHhcCCCC--CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHHH
Confidence 77654321 11223456789999999999999999999999998877765555 777889999999999999998
Q ss_pred HHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCC
Q 014742 283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361 (419)
Q Consensus 283 ~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (419)
.++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.....
T Consensus 265 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------- 316 (549)
T PRK07788 265 HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEV---------------------------- 316 (549)
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccc----------------------------
Confidence 77888999999999866 9999999999999999999999999986521110
Q ss_pred CCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....++ .+||.+++||+++++++.+++++.++.++++.||+||
T Consensus 317 -------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE 359 (549)
T PRK07788 317 -------LAKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTE 359 (549)
T ss_pred -------cCCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcch
Confidence 001112 3899999999999999999999999999999999998
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=323.00 Aligned_cols=287 Identities=29% Similarity=0.425 Sum_probs=236.8
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEE
Q 014742 76 VWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (419)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g--~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 153 (419)
+.+||.|+..++.++|..|.+.| +++||+|++++||++++..+++||..+|++..++||.+...++...++.++++++
T Consensus 44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii 123 (537)
T KOG1176|consen 44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI 123 (537)
T ss_pred cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence 58999999999999999999875 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee-HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCC
Q 014742 154 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS-WEEFLQLGTLDCELPPKKKTNISTIMYTSGTT 232 (419)
Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 232 (419)
|++.+..+.+.+...... ..++++......... ........ ++++........ ......+|++.++||||||
T Consensus 124 f~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTT 196 (537)
T KOG1176|consen 124 FVDEDFYDKISEATSKLA---LKIIVLTGDEGVISI---SDLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTT 196 (537)
T ss_pred EEcCchHHHHHHHHhhcC---CceEEEecccCcccc---ccccccccchhhccccCCCcc-cccCCCCCeEEEecCCCCC
Confidence 999999988866654332 455555443110000 00001111 445444442222 5566789999999999999
Q ss_pred CCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHH-HHhcCceEEEeCC-CHHHHHHHhhh
Q 014742 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQE 310 (419)
Q Consensus 233 G~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~-~l~~G~~ivl~~~-~~~~~~~~i~~ 310 (419)
|.||||.+||++++.+........ .....|+.++.+|++|.+|+..++. .+..|+++++.+. ++..+++.|++
T Consensus 197 g~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~k 271 (537)
T KOG1176|consen 197 GLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEK 271 (537)
T ss_pred CCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHH
Confidence 999999999999999877644433 6667899999999999999998665 5666777777777 99999999999
Q ss_pred hcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEE
Q 014742 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLS 390 (419)
Q Consensus 311 ~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~ 390 (419)
|++|+++++|.++..|++ ++....++|+ ++|.+.+
T Consensus 272 ykvt~~~~vP~~~~~l~~-------------------------------------~p~~~~~~l~--------sl~~v~~ 306 (537)
T KOG1176|consen 272 YKVTHLFLVPPVLNMLAK-------------------------------------SPIVKKYDLS--------SLRSVLS 306 (537)
T ss_pred hCEEEEEcChHHHHHHhc-------------------------------------CCccCcccCC--------ccEEEEe
Confidence 999999999999999976 4455666665 9999999
Q ss_pred ccCCCCHHHHHHHHHhhC-CceeeeccCCC
Q 014742 391 GAAPLPIHVEEFLRVTSG-APLTQGYGMVE 419 (419)
Q Consensus 391 ~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE 419 (419)
||+++++++.++++++++ ..|.++|||||
T Consensus 307 gga~~~~~~~~~~~~~l~~~~v~q~YGmTE 336 (537)
T KOG1176|consen 307 GGAPLSPATLEKVKERLPNVTVIQGYGMTE 336 (537)
T ss_pred cCCCCCHHHHHHHHHhCCCceEEEeecccc
Confidence 999999999999999998 88999999999
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=337.74 Aligned_cols=323 Identities=17% Similarity=0.186 Sum_probs=248.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+...++|++++..+|+++|+++. +.+.+..+.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA 127 (628)
T TIGR02316 51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA 127 (628)
T ss_pred eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 444567888888889999999875 43334457899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcCccCCCCccEEEEecCCChhhHHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
|+++|++++|+++.++.+++.+.++.++++++|+++... ..+.............+++++.......
T Consensus 128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---- 203 (628)
T TIGR02316 128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR---- 203 (628)
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC----
Confidence 999999999999999999999999999999999986431 1111111111123445565553211000
Q ss_pred HhCceeeeHHHHHhcCC-CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHH-hhhhhhhhhhcCccCCCCcEEE
Q 014742 193 ELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l 270 (419)
........|.++..... ...+.....++++++|+|||||||.||||+++|.+++.. .......+ ++.++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 278 (628)
T TIGR02316 204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMF 278 (628)
T ss_pred cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 00001234555544321 112222346789999999999999999999999998644 33333334 778899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|.+++.. ++.+|..|+++++.++ ++..+++.|+++++|+++++|++++.|.+..
T Consensus 279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-------------- 344 (628)
T TIGR02316 279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQD-------------- 344 (628)
T ss_pred EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcC--------------
Confidence 9999999999865 7789999999999863 7899999999999999999999999875410
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....+..++ ++||.+++||+++++++.+++++.+|.++++.||+||
T Consensus 345 ---------------------~~~~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE 390 (628)
T TIGR02316 345 ---------------------AAWLRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTE 390 (628)
T ss_pred ---------------------CcccccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccc
Confidence 000112223 3899999999999999999999989999999999998
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=329.41 Aligned_cols=318 Identities=19% Similarity=0.300 Sum_probs=244.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.+.|..+++.+|+++|+.+. + ..+.++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 111 (614)
T PRK08180 36 DYPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLA 111 (614)
T ss_pred CcCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 34678999999999999999999864 2 2234578999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCC-----hhHHHHHHhhcCceEEEEeCCC-hhhHhhcCccCCCCccEEEEecCCChhhHHHHHH
Q 014742 120 EACNSQAITYVPLYDTLG-----ANAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+||+++|++++|+++.++ .+++.++++.++++++|+++.. .......... ... .++..+....
T Consensus 112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~-------- 180 (614)
T PRK08180 112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP-------- 180 (614)
T ss_pred HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC--------
Confidence 999999999999999998 7999999999999999998642 2222221111 112 2333322110
Q ss_pred hCceeeeHHHHHhcCCC---CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC--CCcE
Q 014742 194 LGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS--EEDT 268 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~ 268 (419)
.....+|+++...... ........++++++|+|||||||.||||++||+++..++......+ ... ..++
T Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~ 254 (614)
T PRK08180 181 -GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPV 254 (614)
T ss_pred -CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcE
Confidence 0012345555443211 1111234578999999999999999999999999998887765544 332 5689
Q ss_pred EEEecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHH
Q 014742 269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342 (419)
Q Consensus 269 ~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (419)
+++++|++|.+++.. ++.+++.|+++++.+. +...+++.++++++|+++++|.+++.|++.+++
T Consensus 255 ~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~---------- 324 (614)
T PRK08180 255 LVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALER---------- 324 (614)
T ss_pred EEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHh----------
Confidence 999999999999875 7788999999999763 345778899999999999999999999764321
Q ss_pred HHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----hC--Cceeeecc
Q 014742 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG--APLTQGYG 416 (419)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~----~~--~~v~~~YG 416 (419)
.+.....++ ++||.+++||+++++++.+++++. +| +++++.||
T Consensus 325 -----------------------~~~~~~~~~--------~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG 373 (614)
T PRK08180 325 -----------------------DAALRRRFF--------SRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLG 373 (614)
T ss_pred -----------------------chhhhhhhc--------cceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeec
Confidence 111122223 389999999999999999999875 33 68999999
Q ss_pred CCC
Q 014742 417 MVE 419 (419)
Q Consensus 417 ~tE 419 (419)
+||
T Consensus 374 ~TE 376 (614)
T PRK08180 374 MTE 376 (614)
T ss_pred ccc
Confidence 998
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=326.99 Aligned_cols=311 Identities=20% Similarity=0.226 Sum_probs=252.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|...++.+|+++|+++. +...+.++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 467999999999999999999875 43334457899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh-----hhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
|+++|++++|+++.++.+++.++++.++++++++++... +.+.+ .......+..++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------ 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARR-LRPELPALRHVVVVGGDG------------ 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHH-HhhhCCCcceEEEecCCC------------
Confidence 999999999999999999999999999999999987541 11111 111223445565554321
Q ss_pred eeeeHHHHHhcC--------CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcE
Q 014742 197 SCFSWEEFLQLG--------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 268 (419)
Q Consensus 197 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (419)
..++.++.... ..........++++++++|||||||.||+|+++|.++...+......+ ++..+++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~ 240 (547)
T PRK13295 167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV 240 (547)
T ss_pred -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence 12233332211 001112234568999999999999999999999999998888766655 7888999
Q ss_pred EEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHH
Q 014742 269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE 346 (419)
Q Consensus 269 ~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (419)
+++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+......
T Consensus 241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~-------------- 306 (547)
T PRK13295 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE-------------- 306 (547)
T ss_pred EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--------------
Confidence 999999999999876 7889999999999877 999999999999999999999999988652110
Q ss_pred HHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...++ ++||.+++||+++++++.+++++.++.++++.||+||
T Consensus 307 -----------------------~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE 348 (547)
T PRK13295 307 -----------------------SGRPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTE 348 (547)
T ss_pred -----------------------cCCCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCC
Confidence 00112 3899999999999999999999999999999999998
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=335.76 Aligned_cols=332 Identities=17% Similarity=0.201 Sum_probs=244.4
Q ss_pred CCCCCHHHHHHHHHHh--CCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH
Q 014742 40 AGLESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~--~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~ 117 (419)
...++..++|+++++. +||++|+++. ..+.+..+.+||.||.++++++|+.|++.|+++||+|+++++|++++++
T Consensus 56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~ 132 (647)
T PTZ00237 56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI 132 (647)
T ss_pred CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 4566677888888764 7999999875 3223334789999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC---------hhhHhhcCccCCCCccEEEEecCCCh--h
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSS--S 186 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 186 (419)
++|||+++|++++|+++.++.+++.++++.++++++|+++.. .+.+.++..........++....... .
T Consensus 133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 212 (647)
T PTZ00237 133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212 (647)
T ss_pred HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence 999999999999999999999999999999999999997631 12222221111011234444321100 0
Q ss_pred hHHH---HHHhCceeeeHHHHHhcC-----CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechh-HHHHhhhhhhhhh
Q 014742 187 QKKE---AEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA-IVAEVLSVDQMFV 257 (419)
Q Consensus 187 ~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~-l~~~~~~~~~~~~ 257 (419)
.... ..........|++++... ..........++++++|+|||||||.||||+++|.+ +..........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~- 291 (647)
T PTZ00237 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII- 291 (647)
T ss_pred cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence 0000 000001123466665421 111223345678999999999999999999999998 444333222223
Q ss_pred hcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC---C----HHHHHHHhhhhcCeEEEecchHHHHHHHHH
Q 014742 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---D----VRYLMEDIQELKPTMFSGVPRVYDRIYTGI 330 (419)
Q Consensus 258 ~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~---~----~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 330 (419)
....+|++++..|++|..++..++.+|+.|+++++.++ + +..+++.|+++++|++.++|++++.|++..
T Consensus 292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 367 (647)
T PTZ00237 292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD 367 (647)
T ss_pred ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence 56678999999999998776668889999999999865 2 678999999999999999999999986520
Q ss_pred HHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCc
Q 014742 331 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP 410 (419)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~ 410 (419)
.. ........+++ +||.+++||+++++++.+++++.+|++
T Consensus 368 ~~--------------------------------~~~~~~~~~l~--------~Lr~i~~~G~~l~~~~~~~~~~~~g~~ 407 (647)
T PTZ00237 368 PE--------------------------------ATIIRSKYDLS--------NLKEIWCGGEVIEESIPEYIENKLKIK 407 (647)
T ss_pred cc--------------------------------ccccccccCcc--------hheEEEecCccCCHHHHHHHHHhcCCC
Confidence 00 00001122333 899999999999999999999999999
Q ss_pred eeeeccCCC
Q 014742 411 LTQGYGMVE 419 (419)
Q Consensus 411 v~~~YG~tE 419 (419)
+++.||+||
T Consensus 408 i~~~yG~TE 416 (647)
T PTZ00237 408 SSRGYGQTE 416 (647)
T ss_pred EEeeechHH
Confidence 999999998
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=333.73 Aligned_cols=322 Identities=20% Similarity=0.281 Sum_probs=250.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+...++|+++++.+|+++|+++. +.+.++.+.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 56 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 132 (625)
T TIGR02188 56 LNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLA 132 (625)
T ss_pred EEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 445677788888899999999976 43345567899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcCccCCC-CccEEEEecCCChhhHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCL-YLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (419)
|+++|++++|+++.++.+++.++++.++++++|+++... ..+.+... ..+ .++.+++++....... +.
T Consensus 133 ~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 210 (625)
T TIGR02188 133 CARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPVP-WV 210 (625)
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCcC-cc
Confidence 999999999999999999999999999999999987532 11111111 112 3455665543221100 00
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhh-hhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~l 270 (419)
......|+++..............++++++|+|||||||.||||+++|++++...... ...+ ++.++|+++
T Consensus 211 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~ 282 (625)
T TIGR02188 211 ---EGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFW 282 (625)
T ss_pred ---ccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEE
Confidence 0012345555544322223334567899999999999999999999999987554432 2223 778889999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|..++.. ++.+|..|+++++.++ ++..+++.|+++++|++.++|++++.|.+...
T Consensus 283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------- 349 (625)
T TIGR02188 283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD------------- 349 (625)
T ss_pred ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC-------------
Confidence 9999999998875 7789999999999753 78999999999999999999999999865210
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++.+++.+.++ +++++.||+||
T Consensus 350 ----------------------~~~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE 397 (625)
T TIGR02188 350 ----------------------EWVKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTE 397 (625)
T ss_pred ----------------------cccccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccc
Confidence 00111223 38999999999999999999999885 78999999998
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=330.46 Aligned_cols=326 Identities=21% Similarity=0.267 Sum_probs=253.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....|+.++|.+.++.+|+++|+.+... ++.....+++||.||.+++.++|+.|++.|+++||+|+++++|++++++++
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~ 100 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL 100 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 3466899999999999999999986411 111223468999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh-----hhHhhcCccCCCCccEEEEecCCChhh--HHHH-
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQ--KKEA- 191 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 191 (419)
|||+++| +++|+++.++.+++.++++.++++++|++.... +.+..... ..+.++.++.++...... ..+.
T Consensus 101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLA-ALPELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHh-cCCcceeEEEecCcccccccccccc
Confidence 9999999 579999999999999999999999999986542 22222222 224555666654321100 0000
Q ss_pred ----HHhCceeeeHHHHHhcCCC--CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCC
Q 014742 192 ----EELGVSCFSWEEFLQLGTL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 265 (419)
Q Consensus 192 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 265 (419)
......+..+.+.+..... ........++++++++|||||||.||+|.+||++++.++......+ ...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~ 253 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGP 253 (632)
T ss_pred cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCC
Confidence 0011123455555544311 1122234678999999999999999999999999998887766655 6788
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC----C---HHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcc
Q 014742 266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337 (419)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~----~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (419)
+|++++.+|++|.+++.. ++.++..|+++++.+. + ...+++.++++++|++.++|+++..+++.
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-------- 325 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQV-------- 325 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhC--------
Confidence 999999999999999886 7889999999999753 2 36788999999999999999999998651
Q ss_pred CchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccC
Q 014742 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGM 417 (419)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~ 417 (419)
+ .+..++ ++||.+++||+++++++.++|++.+|+++++.||+
T Consensus 326 -----------------------------~-~~~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~ 367 (632)
T PRK07529 326 -----------------------------P-VDGHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGL 367 (632)
T ss_pred -----------------------------c-ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecc
Confidence 0 001122 38999999999999999999999999999999999
Q ss_pred CC
Q 014742 418 VE 419 (419)
Q Consensus 418 tE 419 (419)
||
T Consensus 368 TE 369 (632)
T PRK07529 368 TE 369 (632)
T ss_pred cc
Confidence 98
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=326.57 Aligned_cols=319 Identities=19% Similarity=0.303 Sum_probs=243.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.+.|..+++.+||++++++. +...+.++.+||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 34678999999999999999999864 332345678999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCCh-----hHHHHHHhhcCceEEEEeCCC-hhhHhhcCccCCCCccEEEEecCCChhhHHHHHH
Q 014742 120 EACNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+||+++|++++|+++.++. +++.++++.++++++|+++.. .......... ... .++.++....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~-------- 191 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDV-TVVHVTGPGE-------- 191 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCc-eEEEEcCCCc--------
Confidence 9999999999999999885 899999999999999998642 2222222211 112 2333332210
Q ss_pred hCceeeeHHHHHhcCCCC---CCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC---CCc
Q 014742 194 LGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS---EED 267 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~---~~d 267 (419)
......+.++....... .......++++++|+|||||||.||||++||+++..++....... ... ..+
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~ 265 (624)
T PRK12582 192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPP 265 (624)
T ss_pred -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCc
Confidence 00123455554332111 111234578999999999999999999999999998776654433 222 257
Q ss_pred EEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--C---HHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchH
Q 014742 268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341 (419)
Q Consensus 268 ~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 341 (419)
++++++|++|.+|+.. ++.++..|+++++.+. + ...+++.++++++|++.++|.+++.|++.+..
T Consensus 266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~--------- 336 (624)
T PRK12582 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEK--------- 336 (624)
T ss_pred eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhh---------
Confidence 9999999999999876 6678999999999763 3 34567788999999999999999988753221
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh------CCceeeec
Q 014742 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS------GAPLTQGY 415 (419)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~------~~~v~~~Y 415 (419)
.+.....+++ +||.+++||+++++++.++|++.+ +++++++|
T Consensus 337 ------------------------~~~~~~~~~~--------slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y 384 (624)
T PRK12582 337 ------------------------DDALRRSFFK--------NLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY 384 (624)
T ss_pred ------------------------CHHHHHHHhh--------heeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence 1222233343 899999999999999999999863 36899999
Q ss_pred cCCC
Q 014742 416 GMVE 419 (419)
Q Consensus 416 G~tE 419 (419)
|+||
T Consensus 385 G~TE 388 (624)
T PRK12582 385 GATE 388 (624)
T ss_pred cccc
Confidence 9998
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=326.18 Aligned_cols=305 Identities=20% Similarity=0.215 Sum_probs=241.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|.+.++.+|+++++.+. +. ..+||.||.++++++|+.|.+ .+||+|+++++|+++++++++|
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA 86 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA 86 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence 578999999999999999998754 32 379999999999999999987 3899999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++.+....+.+...........++..++.... ..+
T Consensus 87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~ 154 (539)
T PRK06334 87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF 154 (539)
T ss_pred HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence 99999999999999999999999999999999998765554432211100011123333321100 000
Q ss_pred HHHHh------cCC----CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEE
Q 014742 202 EEFLQ------LGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271 (419)
Q Consensus 202 ~~~~~------~~~----~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (419)
.+... ... .........++++++|+|||||||.||||++||+++..+.......+ +...+|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~ 229 (539)
T PRK06334 155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS 229 (539)
T ss_pred HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence 00000 000 00112234678999999999999999999999999998877765555 7788999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHH
Q 014742 272 FLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA 348 (419)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
.+|++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|.+++.|++...
T Consensus 230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------- 292 (539)
T PRK06334 230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAK----------------- 292 (539)
T ss_pred ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhh-----------------
Confidence 999999999975 7788999999998753 99999999999999999999999999875311
Q ss_pred HHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
....++ ++||.+++||+++++++.+++++.+ ++++++.||+||
T Consensus 293 --------------------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 336 (539)
T PRK06334 293 --------------------KQESCL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE 336 (539)
T ss_pred --------------------hccccc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccc
Confidence 111112 3899999999999999999999988 789999999998
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=320.12 Aligned_cols=329 Identities=21% Similarity=0.285 Sum_probs=261.6
Q ss_pred CCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCC
Q 014742 20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99 (419)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~ 99 (419)
.+++-+||+-.+....| ...++.+.+..+++.+|+++|+++. +.. +.+||.||.++++++|+.|.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~ 72 (537)
T PLN02246 4 ASEEFIFRSKLPDIYIP----NHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGI 72 (537)
T ss_pred ccceeEecCCCCCCCCC----CCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCC
Confidence 45667788887654332 2568999999999999999999864 211 579999999999999999999999
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEE
Q 014742 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179 (419)
Q Consensus 100 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (419)
++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|++....+.+...... ..+ .++.
T Consensus 73 ~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~ 149 (537)
T PLN02246 73 RQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVT 149 (537)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEE
Confidence 9999999999999999999999999999999999999999999999999999999998776655433211 112 3444
Q ss_pred ecCCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhc
Q 014742 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259 (419)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~ 259 (419)
+++... ....+.++........+.....++++++++|||||||.||||+++|+++...+....... ..
T Consensus 150 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~~ 217 (537)
T PLN02246 150 IDDPPE-----------GCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-NP 217 (537)
T ss_pred eCCCCC-----------CceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-cc
Confidence 443211 123455554333222233345678999999999999999999999999988766533210 01
Q ss_pred CccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcc
Q 014742 260 GKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337 (419)
Q Consensus 260 ~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (419)
...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..|.+.
T Consensus 218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-------- 289 (537)
T PLN02246 218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKS-------- 289 (537)
T ss_pred ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcC--------
Confidence 236788999999999999999876 6788999999999987 999999999999999999999999887641
Q ss_pred CchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeecc
Q 014742 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYG 416 (419)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG 416 (419)
+......+ +++|.+++||+++++++.+.+++.+ +..+++.||
T Consensus 290 -----------------------------~~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG 332 (537)
T PLN02246 290 -----------------------------PVVEKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG 332 (537)
T ss_pred -----------------------------ccccccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence 11111122 2899999999999999999999988 778999999
Q ss_pred CCC
Q 014742 417 MVE 419 (419)
Q Consensus 417 ~tE 419 (419)
+||
T Consensus 333 ~tE 335 (537)
T PLN02246 333 MTE 335 (537)
T ss_pred ccc
Confidence 998
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=329.01 Aligned_cols=316 Identities=16% Similarity=0.201 Sum_probs=242.1
Q ss_pred CCCHHH-HHHHHHHhCCCCCceeeeeccCCC--CCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 42 LESPWQ-FFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 42 ~~tl~~-~l~~~a~~~pd~~ai~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
..++.+ +|++++..+|+++|+++. +.. +.+.+++||.||.++++++|+.|++.|+++||+|+++++|+++++++
T Consensus 173 ~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via 249 (728)
T PLN03052 173 VLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVII 249 (728)
T ss_pred EeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 344444 566666678999999986 321 23467899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcCccCCCCccEEEEecCCChhhHH
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKK 189 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (419)
++||+++|++++|+++.++.+++.++++.++++++|+++... ..+.... . +.++++........
T Consensus 250 ~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~----~--~~~iv~~~~~~~~~- 322 (728)
T PLN03052 250 YLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK----A--PKAIVLPADGKSVR- 322 (728)
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc----C--CcEEEEeCCCCccc-
Confidence 999999999999999999999999999999999999987532 1111111 1 22333322110000
Q ss_pred HHHHhCceeeeHHHHHhcCC-----CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC
Q 014742 190 EAEELGVSCFSWEEFLQLGT-----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (419)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (419)
.........|+++..... .........++++++|+|||||||.||||+++|.+++..+......+ +++
T Consensus 323 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~ 395 (728)
T PLN03052 323 --VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIR 395 (728)
T ss_pred --cccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCC
Confidence 000001245777654321 01111123468999999999999999999999999877665543333 778
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHH
Q 014742 265 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342 (419)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (419)
++|++++..+++|+++...++.+|..|+++++.++ +...+++.++++++|++.++|++++.+.+.
T Consensus 396 ~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~------------- 462 (728)
T PLN03052 396 KGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNT------------- 462 (728)
T ss_pred CCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhc-------------
Confidence 89999999999999998777899999999999976 667899999999999999999999987541
Q ss_pred HHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC-CceeeeccCCC
Q 014742 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGMVE 419 (419)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE 419 (419)
...+..+++ +||.+++||++++++...++.+.++ .++.+.||+||
T Consensus 463 ------------------------~~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE 508 (728)
T PLN03052 463 ------------------------NCMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTE 508 (728)
T ss_pred ------------------------CCcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChh
Confidence 111223444 8999999999999999988888776 57999999998
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=325.96 Aligned_cols=319 Identities=20% Similarity=0.288 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHH
Q 014742 45 PWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124 (419)
Q Consensus 45 l~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~ 124 (419)
..++|+++++.+|+++|+++. +.+.+..+.+||.||.++++++|++|++.|+++||+|+++++|+++++++++||++
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 145 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR 145 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 456788888899999999975 33333457899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcCccCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 125 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+|++++|+++.++.+++.++++.++++++|+++... +.+.+... ..+..+.+++.+....... . ..
T Consensus 146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~---~~ 220 (637)
T PRK00174 146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALA-NCPSVEKVIVVRRTGGDVD-W---VE 220 (637)
T ss_pred cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHH-hCCCccEEEEEcCCCCCcC-c---CC
Confidence 999999999999999999999999999999987542 11111111 1234455655543221000 0 00
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhh-hhhhhhcCccCCCCcEEEEecC
Q 014742 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLP 274 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~l~~~p 274 (419)
.....|+++..............++++++|+|||||||.||||+++|++++.+.... ...+ ++..+|++++..|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~ 295 (637)
T PRK00174 221 GRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTAD 295 (637)
T ss_pred CCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcCC
Confidence 012345555543322223334567899999999999999999999999987654332 2223 6778899999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHH
Q 014742 275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA 348 (419)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
++|..++.. ++.+|..|+++++.++ ++..+++.|+++++|++.++|++++.|++...
T Consensus 296 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------- 358 (637)
T PRK00174 296 VGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGD----------------- 358 (637)
T ss_pred chHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCC-----------------
Confidence 999999875 7889999999999753 78999999999999999999999998865210
Q ss_pred HHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++.+++.+.++ +++++.||+||
T Consensus 359 ------------------~~~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE 406 (637)
T PRK00174 359 ------------------EHPKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTE 406 (637)
T ss_pred ------------------cccccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccc
Confidence 00111122 38999999999999999999999886 78999999998
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=320.90 Aligned_cols=318 Identities=21% Similarity=0.301 Sum_probs=256.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCchhHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~~~~~~ 118 (419)
.+..++.+.|...+..+|+++|+++. + +.+||.||.+++.+++..|.+. |+++||+|+++++|+++++++
T Consensus 7 ~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~ 77 (546)
T PRK08314 7 LPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIA 77 (546)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHH
Confidence 45678999999999999999999975 3 4799999999999999999998 999999999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhH-------HHH
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-------KEA 191 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 191 (419)
++||+++|++++|+++.++.+++.++++.++++++|++.+....+....... .++.+++.+....... .+.
T Consensus 78 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (546)
T PRK08314 78 YYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWL 155 (546)
T ss_pred HHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccc
Confidence 9999999999999999999999999999999999999988766654433221 2333333221100000 000
Q ss_pred -------HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC
Q 014742 192 -------EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (419)
Q Consensus 192 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (419)
.-.......|++...... ........++++++++|||||||.||+|.++|++++.++......+ ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~ 229 (546)
T PRK08314 156 RAEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST 229 (546)
T ss_pred ccccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence 000112345665554321 1223345678999999999999999999999999999888766655 778
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHH
Q 014742 265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342 (419)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (419)
.+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++..
T Consensus 230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~------------- 296 (546)
T PRK08314 230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLAS------------- 296 (546)
T ss_pred CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhC-------------
Confidence 8999999999999999876 7788999999999987 999999999999999999999999887641
Q ss_pred HHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+..+..+++ ++|.+++||+++++++.+++.+.++.++++.||+||
T Consensus 297 ------------------------~~~~~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 341 (546)
T PRK08314 297 ------------------------PGLAERDLS--------SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTE 341 (546)
T ss_pred ------------------------CCccccCch--------hhheeeeccccCCHHHHHHHHHHcCCcEEecccccc
Confidence 111222232 789999999999999999999999999999999998
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=326.45 Aligned_cols=323 Identities=17% Similarity=0.206 Sum_probs=246.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+...++|+++++.+|+++|+++. +.+++..+.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 52 ~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 128 (629)
T PRK10524 52 TNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLA 128 (629)
T ss_pred eeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 334577788888889999999875 43334457899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcCccCCCCccEEEEecCCChhhHHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
|+++|++++|+++.++.+++...++.++++++|+++... +.+.+...........+++++.......
T Consensus 129 ~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---- 204 (629)
T PRK10524 129 CARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA---- 204 (629)
T ss_pred HHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC----
Confidence 999999999999999999999999999999999976421 2222221111123345555543211000
Q ss_pred HhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCcEEE
Q 014742 193 ELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (419)
........|.++.... ....+.....++++++++|||||||.||||+++|.++...... ....+ ++.++|+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~ 279 (629)
T PRK10524 205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFF 279 (629)
T ss_pred cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0000123455554332 1112222345789999999999999999999999997644433 23333 677889999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|.+++.. ++.++..|+++++.++ ++..+++.|+++++|++.++|++++.+.+.-
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-------------- 345 (629)
T PRK10524 280 CASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD-------------- 345 (629)
T ss_pred EcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcC--------------
Confidence 9999999988765 7788999999999763 7899999999999999999999998875410
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....+..+++ +||.+++||+++++++.+++++.++.++++.||+||
T Consensus 346 ---------------------~~~~~~~~l~--------~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE 391 (629)
T PRK10524 346 ---------------------PALLRKHDLS--------SLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTE 391 (629)
T ss_pred ---------------------cccccccChh--------heeEEEEeCCCCCHHHHHHHHHhcCCCeEecccccc
Confidence 0001122233 899999999999999999999999999999999998
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=315.58 Aligned_cols=314 Identities=22% Similarity=0.339 Sum_probs=260.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
.+..++.+.|...++.+|+++|+.+. + +++||.||++.+.++|+.|.+.|+++||+|+++++|++++++++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~ 72 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA 72 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 35688999999999999999999874 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++..+.+++..+++.+++++++++........... ......+.++......... ......
T Consensus 73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~ 145 (513)
T PRK07656 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMK 145 (513)
T ss_pred HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------Cccccc
Confidence 999999999999999999999999999999999999987665543332 2223445555444332110 001234
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
+|+++..............++++++++|||||||.||+|.++|.++...+......+ ++..+|++++.+|++|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 220 (513)
T PRK07656 146 TFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVF 220 (513)
T ss_pred cHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHH
Confidence 567776544322333445778999999999999999999999999998888766666 788899999999999999
Q ss_pred HHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 280 g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+.+...
T Consensus 221 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------------- 274 (513)
T PRK07656 221 GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPD-------------------------- 274 (513)
T ss_pred HHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCC--------------------------
Confidence 9886 7888999999998876 99999999999999999999999999865211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCC-ceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE 419 (419)
.....+ +++|.+++||+++++++.+++++.++. ++++.||+||
T Consensus 275 -----------~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE 318 (513)
T PRK07656 275 -----------RSAEDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSE 318 (513)
T ss_pred -----------cCCCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEcccc
Confidence 011112 389999999999999999999999998 8999999998
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=297.96 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=256.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
-...++.+++...++++|+++|+++. +.. +.+||.|+.+.++++|+.|...|++.||.|+++|+|.++|+.++
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 45789999999999999999999987 432 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+|++++|++...||+++..+.|.|.++.++++.+|++.+..+.+.+.........-.++..+..... .+..
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~---------~g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP---------DGIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC---------chHH
Confidence 9999999999999999999999999999999999999998887766633222222223333222211 1122
Q ss_pred eHHHHHhcC-CCC---CCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh
Q 014742 200 SWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (419)
Q Consensus 200 ~~~~~~~~~-~~~---~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (419)
++.+.++.. ..+ .......-.++++.+|||||||.||+.+++|..+...+..+...+ +++++|+++..+|+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL 292 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL 292 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence 333333333 112 112334456899999999999999999999999998888776766 99999999999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 276 AHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
+|+.|.+. +..++..|+|+++-.+ +...+|+...+|++|++..+-.+.+.|+++
T Consensus 293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~------------------------ 348 (649)
T KOG1179|consen 293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQ------------------------ 348 (649)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcC------------------------
Confidence 99999988 7789999999999887 999999999999999999999998888762
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCc-eeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE 419 (419)
+..+.-+. |++|.++ |..+.+++++.|.++||.. |.+.||+||
T Consensus 349 ----------p~~~~er~-----------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTE 392 (649)
T KOG1179|consen 349 ----------PPSPEERQ-----------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATE 392 (649)
T ss_pred ----------CCChhhcC-----------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEecccc
Confidence 11221111 6888877 8899999999999999876 999999998
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=317.23 Aligned_cols=306 Identities=18% Similarity=0.190 Sum_probs=247.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|...++.+||++|+.+. + ..+||.||.++++++|++|.+.|+++|++|+++++|++++++.++|
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 112 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLA 112 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHH
Confidence 367999999999999999999864 2 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++......+...... ......++..++... ...+
T Consensus 113 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~ 179 (537)
T PRK13382 113 ANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDEDH------------DLTV 179 (537)
T ss_pred HHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCcc------------cccH
Confidence 999999999999999999999999999999999998766554333221 122223333322110 1233
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
+.+....... .....+++.++++|||||||.||||+++|.++..........+ .+..++++++..|++|.+++
T Consensus 180 ~~~~~~~~~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~ 252 (537)
T PRK13382 180 EVLIAAHAGQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF 252 (537)
T ss_pred HHHhhccCcC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence 4443322111 1122467889999999999999999999999988777765555 67788999999999999999
Q ss_pred HHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCC
Q 014742 282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (419)
..++.++..|+++++.+. +++.+++.|+++++|++.++|.+++.+++....
T Consensus 253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------------- 304 (537)
T PRK13382 253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE---------------------------- 304 (537)
T ss_pred HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCch----------------------------
Confidence 778888999999998766 999999999999999999999999998652100
Q ss_pred CCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..+..++ .++|.+++||+++++++++.|.+.+|.++++.||+||
T Consensus 305 -------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE 348 (537)
T PRK13382 305 -------VRNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATE 348 (537)
T ss_pred -------hcccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccc
Confidence 0111112 2899999999999999999999999999999999998
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=318.57 Aligned_cols=326 Identities=19% Similarity=0.276 Sum_probs=257.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHH
Q 014742 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 39 ~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~ 117 (419)
.....|+.++|+.++..+|+++|+.+. +. +.+.+||.||.++++++|++|++ .|+++||+|+++++|++++++
T Consensus 6 ~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~ 79 (576)
T PRK05620 6 QDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLE 79 (576)
T ss_pred hcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHH
Confidence 344578999999999999999999864 22 23689999999999999999996 799999999999999999999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
+++||+++|++++|+++..+.+++.++++.++++++|++....+.+.+.... ....+.++..+................
T Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 158 (576)
T PRK05620 80 VLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEGIK 158 (576)
T ss_pred HHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhccccccc
Confidence 9999999999999999999999999999999999999998776655443332 234455555543211100000011123
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
..+|.++..............++++++++|||||||.||||.++|+++.......... ..+.+..++++++.+|++|
T Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h 235 (576)
T PRK05620 159 VYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTT---DSLAVTHGESFLCCVPIYH 235 (576)
T ss_pred cccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhh---hhcCCCCCCeEEEeCChHH
Confidence 4567777764422222334567899999999999999999999999986554432211 1126778899999999999
Q ss_pred HHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 278 IYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 278 ~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
.+++...+.++..|+++++... ++..+++.|+++++|.+.++|.++..++.....
T Consensus 236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 292 (576)
T PRK05620 236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLK----------------------- 292 (576)
T ss_pred hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhc-----------------------
Confidence 9999888889999999998764 899999999999999999999999887642110
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.. .+ . .++|.+++||+++++.+.++|++.+|+++++.||+||
T Consensus 293 ----------~~-~~---~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 334 (576)
T PRK05620 293 ----------NP-PE---R--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTE 334 (576)
T ss_pred ----------cC-cc---c--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccc
Confidence 00 00 0 2799999999999999999999989999999999998
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=320.10 Aligned_cols=314 Identities=17% Similarity=0.228 Sum_probs=253.0
Q ss_pred CCCHHHHHHHHHH-hCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~-~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
.+.+.+.+.+++. .+|+++|+.+. +.. ..+.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 116 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALL 116 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 4555678888877 57999999875 422 23589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.++++++|++......... ...+..+.++.+++... ......+
T Consensus 117 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~ 185 (570)
T PRK04319 117 GALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTLD 185 (570)
T ss_pred HHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCccC
Confidence 999999999999999999999999999999999998775543321 12234455665553321 0112345
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+.++..............++++++++|||||||.||||+++|+++...+......+ ++..+|++++..|++|.+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g 260 (570)
T PRK04319 186 FNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVTG 260 (570)
T ss_pred HHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhhC
Confidence 66655443222333345678999999999999999999999999998877766555 7888999999999999998
Q ss_pred HHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 281 QII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 281 ~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+.. ++.++..|+++++... ++..+++.|+++++|+++++|.+++.+.+...
T Consensus 261 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------- 314 (570)
T PRK04319 261 TSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGD-------------------------- 314 (570)
T ss_pred chHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCC--------------------------
Confidence 775 7889999999999864 99999999999999999999999999865200
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
......++ ++||.+++||+++++++.+++++.+|.++++.||+||
T Consensus 315 ---------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE 359 (570)
T PRK04319 315 ---------DLVKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTE 359 (570)
T ss_pred ---------cccccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecc
Confidence 00111122 3899999999999999999999999999999999998
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=313.72 Aligned_cols=314 Identities=24% Similarity=0.373 Sum_probs=263.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|.+.++.+|+++|+.+. + +.+||.||.+.++++|+.|.+.|+++|++|+++++|+.++++++
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~ 73 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY 73 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45678999999999999999999875 4 35999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++..+.+++..+++.+++++++++.+..+.+.+... .....+.++..++.... .......
T Consensus 74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~ 146 (521)
T PRK06187 74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILP-QLPTVRTVIVEGDGPAA------PLAPEVG 146 (521)
T ss_pred HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhh-ccCCccEEEEecCcccc------ccccccc
Confidence 9999999999999999999999999999999999999887766544433 22445566666554310 1112345
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.+.++..............++++++++|||||||.||+|.++|.++..........+ ++..+|++++.+|++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 221 (521)
T PRK06187 147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH 221 (521)
T ss_pred cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence 666666554333334455678999999999999999999999999998888766655 888999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
++...+.++..|+++++++. ++..+++.++++++|.++++|.+++.+.+....
T Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-------------------------- 275 (521)
T PRK06187 222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA-------------------------- 275 (521)
T ss_pred hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--------------------------
Confidence 99886679999999999887 999999999999999999999999998652110
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....+ .++|.+++||+++++++.+++.+.+++++++.||+||
T Consensus 276 -----------~~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE 317 (521)
T PRK06187 276 -----------YFVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTE 317 (521)
T ss_pred -----------CccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCc
Confidence 11112 3899999999999999999999988999999999998
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=312.99 Aligned_cols=312 Identities=20% Similarity=0.216 Sum_probs=250.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.+.+.++.+|+++|++.. +...+..+.+||.||.++++++|.+|++.|+++|++|+++++|+++++++++|
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 97 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA 97 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999864 22222346899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++|+++..+.+++.++++.++++++++++.... ...............++..+...
T Consensus 98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (538)
T TIGR03208 98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG------------- 164 (538)
T ss_pred HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------
Confidence 9999999999999999999999999999999999876421 11111122223344555554321
Q ss_pred eeeHHHHHhcCC----CC----CCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEE
Q 014742 198 CFSWEEFLQLGT----LD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (419)
Q Consensus 198 ~~~~~~~~~~~~----~~----~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (419)
...++.+..... .. .......++++++++|||||||.||||+++|+++...+......+ ++..+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~ 239 (538)
T TIGR03208 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVI 239 (538)
T ss_pred CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeE
Confidence 112333222110 00 111234678999999999999999999999999999888766655 77889999
Q ss_pred EEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 270 l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+...+...
T Consensus 240 l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------- 305 (538)
T TIGR03208 240 LMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES-------------- 305 (538)
T ss_pred EEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc--------------
Confidence 99999999999876 7788999999999876 9999999999999999999999998886522110
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..++ +++|.+++||+++++++.+++.+.+|.++++.||+||
T Consensus 306 -----------------------~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 346 (538)
T TIGR03208 306 -----------------------GAPV--------PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE 346 (538)
T ss_pred -----------------------CCCC--------CcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCc
Confidence 0011 3899999999999999999999988999999999998
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=311.89 Aligned_cols=309 Identities=25% Similarity=0.357 Sum_probs=254.8
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHH
Q 014742 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (419)
Q Consensus 44 tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~ 123 (419)
++.+.|...++.+|+++++.+. + +.+||.||.+++.+++++|++.|+.+|++|+++++|+.+++++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4788999999999999999864 3 479999999999999999999999999999999999999999999999
Q ss_pred HcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHH
Q 014742 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (419)
Q Consensus 124 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (419)
++|++++|+++.++.+++..+++.++++++|++....+.+.+..... .....++.+++..... ........|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHAS-----EGGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCccccc-----CCccccccHHH
Confidence 99999999999999999999999999999999987766554443322 3445555555432100 00112345666
Q ss_pred HHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH
Q 014742 204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (419)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (419)
+...... ........+++++++|||||||.||+|.+||.++...+......+ .+..+|++++.+|++|.+++..
T Consensus 146 ~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~ 219 (515)
T TIGR03098 146 LLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFNQ 219 (515)
T ss_pred hhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHHH
Confidence 6543321 122334567899999999999999999999999998888866655 7788899999999999999988
Q ss_pred HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCC
Q 014742 284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362 (419)
Q Consensus 284 ~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (419)
++.++..|+++++.+. +++.+++.++++++|++.++|.++..+.+..
T Consensus 220 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 267 (515)
T TIGR03098 220 LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLD-------------------------------- 267 (515)
T ss_pred HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcc--------------------------------
Confidence 8899999999999877 9999999999999999999999999875410
Q ss_pred CCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.+..++ .++|.+++||+++++++.+.+++.+ +..+++.||+||
T Consensus 268 ------~~~~~~--------~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE 311 (515)
T TIGR03098 268 ------WPESAA--------PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE 311 (515)
T ss_pred ------cCCCCc--------cceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecccc
Confidence 000011 3899999999999999999999988 788999999998
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=314.55 Aligned_cols=332 Identities=20% Similarity=0.226 Sum_probs=247.0
Q ss_pred CCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCC
Q 014742 22 GGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVN 100 (419)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~ 100 (419)
+..++++..++..+|.. +..++.+.+... +.+|+++|+++. ++. ..+||.||.++++++|++|++ .|++
T Consensus 21 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~ 90 (560)
T PLN02574 21 ETGIYSSKHPPVPLPSD--PNLDAVSFIFSH-HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVR 90 (560)
T ss_pred CCeeecCCCCCCCCCCC--CCCCHHHHHhcC-cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 35667776544333332 233444444433 678999999864 221 369999999999999999998 9999
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEe
Q 014742 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (419)
Q Consensus 101 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (419)
+||+|+++++|+.+++++++||+++|++++|+++..+.+++.++++.++++++|++.+....+... ... ++.+
T Consensus 91 ~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~ 163 (560)
T PLN02574 91 QGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGV 163 (560)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEec
Confidence 999999999999999999999999999999999999999999999999999999998765554321 111 2222
Q ss_pred cCCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcC
Q 014742 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 260 (419)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~ 260 (419)
++..... ........++++..............++++++++|||||||.||||++||+++...+..+........
T Consensus 164 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 238 (560)
T PLN02574 164 PENYDFD-----SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQY 238 (560)
T ss_pred Ccccccc-----cCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccc
Confidence 2110000 00011234555544432222233445789999999999999999999999999987765433110001
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccC
Q 014742 261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338 (419)
Q Consensus 261 ~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 338 (419)
.....++++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+.+...
T Consensus 239 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------- 311 (560)
T PLN02574 239 EYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAK------- 311 (560)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcc-------
Confidence 12235688899999999999986 6677889999999877 99999999999999999999999999865210
Q ss_pred chHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccC
Q 014742 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGM 417 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~ 417 (419)
.....++ +++|.+++||+++++++++++.+.+ ++++++.||+
T Consensus 312 -----------------------------~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~ 354 (560)
T PLN02574 312 -----------------------------GVCGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354 (560)
T ss_pred -----------------------------ccccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEecccc
Confidence 0011122 3899999999999999999999988 7899999999
Q ss_pred CC
Q 014742 418 VE 419 (419)
Q Consensus 418 tE 419 (419)
||
T Consensus 355 tE 356 (560)
T PLN02574 355 TE 356 (560)
T ss_pred cc
Confidence 98
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=312.58 Aligned_cols=325 Identities=18% Similarity=0.255 Sum_probs=253.4
Q ss_pred CCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCC
Q 014742 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (419)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (419)
....+|++.+..... +...|+.+.|.+.++.+|+++|+.+. .++ +.+||.||.++++++|+.|++.|++
T Consensus 10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~ 78 (546)
T PLN02330 10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLR 78 (546)
T ss_pred ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCC
Confidence 344567777655322 34688999999999999999999863 221 4799999999999999999999999
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEe
Q 014742 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (419)
Q Consensus 101 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (419)
+|++|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+... ..+ ++.+
T Consensus 79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~~-~i~~ 151 (546)
T PLN02330 79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GLP-VIVL 151 (546)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CCc-EEEe
Confidence 999999999999999999999999999999999999999999999999999999998876655332 112 3333
Q ss_pred cCCChhhHHHHHHhCceeeeHHHHHhcCC---CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhh
Q 014742 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGT---LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257 (419)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~ 257 (419)
+.... .....|.++..... .........++++++++|||||||.||||.++|+++..++.......
T Consensus 152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~- 220 (546)
T PLN02330 152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV- 220 (546)
T ss_pred cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence 32210 11234555554331 11122334568999999999999999999999999987664321111
Q ss_pred hcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 014742 258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335 (419)
Q Consensus 258 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 335 (419)
.......++.+..+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|.+.++|.++..+++.
T Consensus 221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------ 292 (546)
T PLN02330 221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN------ 292 (546)
T ss_pred --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhC------
Confidence 112224568899999999999875 6788999999999877 999999999999999999999999988641
Q ss_pred ccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeee
Q 014742 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQG 414 (419)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~ 414 (419)
+..+..++.. .++|.+++||+++++++.+++++.| |.++++.
T Consensus 293 -------------------------------~~~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~ 335 (546)
T PLN02330 293 -------------------------------PIVEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA 335 (546)
T ss_pred -------------------------------ccccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence 1111111211 1689999999999999999999998 8999999
Q ss_pred ccCCC
Q 014742 415 YGMVE 419 (419)
Q Consensus 415 YG~tE 419 (419)
||+||
T Consensus 336 YG~tE 340 (546)
T PLN02330 336 YGLTE 340 (546)
T ss_pred ccccc
Confidence 99998
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=311.96 Aligned_cols=318 Identities=20% Similarity=0.302 Sum_probs=251.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
-..++.++|+.+++.+|+.+++.+. ..++.+.+||.||.++++++|++|.+.|+++||+|+++++|+++++.+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~l 82 (539)
T PRK07008 8 MPLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYY 82 (539)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3467999999999999999888753 11234679999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++..+.+++..+++.+++++++++.+..+.+.+... .....+.++...+..... .......+
T Consensus 83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (539)
T PRK07008 83 GVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLP-----AGSTPLLC 156 (539)
T ss_pred HHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCccc-----cCCccccc
Confidence 999999999999999999999999999999999999876655433322 223344444444322100 00122456
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhh--hhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
++++..............++++++++|||||||.||+|++||.++..+.. .+...+ +...+|++++.+|++|.
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (539)
T PRK07008 157 YETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHV 231 (539)
T ss_pred HHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHh
Confidence 66665443222223345678899999999999999999999999875432 222233 67788999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 279 YDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+++...+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++..+.
T Consensus 232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~------------------------ 287 (539)
T PRK07008 232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE------------------------ 287 (539)
T ss_pred hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc------------------------
Confidence 887777788999999999754 899999999999999999999999988652110
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...++ +++|.++++|+++++++.+++++.+|+++++.||+||
T Consensus 288 -------------~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE 329 (539)
T PRK07008 288 -------------AGLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTE 329 (539)
T ss_pred -------------cCCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceeccccccc
Confidence 01112 3899999999999999999999999999999999998
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=307.63 Aligned_cols=287 Identities=22% Similarity=0.296 Sum_probs=241.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+.++.++|.+++..+||++|+.+. + +.+||.||.+++++++++|.+.|+++||+|+++++|+.+++++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 368999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++..+++.++++++++++.......... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999876544321110 0013
Q ss_pred HHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+++.... ..........++++++++|||||||.||+|.+||.++...+......+ ++..+|++++.+|++|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence 3333222 111122234578999999999999999999999999988776655545 7889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
+..++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+.+.
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~---------------------------- 248 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLG---------------------------- 248 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC----------------------------
Confidence 9888889999999999987 99999999999999999999999999864211
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.... . .++|.+++||+++++.+.+.+++. |+++++.||+||
T Consensus 249 ------~~~~----~--------~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE 289 (483)
T PRK03640 249 ------EGTY----P--------SSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTE 289 (483)
T ss_pred ------cccc----C--------CcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCc
Confidence 0000 0 389999999999999999999884 999999999998
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=311.32 Aligned_cols=307 Identities=17% Similarity=0.166 Sum_probs=246.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|+++++.+|+++|+++. + +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 92 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA 92 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 567999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++++++..+.+++.++++.+++++++++..... ...+......+....++...+...
T Consensus 93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 160 (527)
T TIGR02275 93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------ 160 (527)
T ss_pred HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence 9999999999999999999999999999999999875421 111111111223344444332110
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
.....................++++++++|||||||.||+|.+||.++..++......+ .+..+|++++.+|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~h 235 (527)
T TIGR02275 161 EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAAH 235 (527)
T ss_pred cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChHh
Confidence 00011111111111223345678999999999999999999999999998888766555 7788999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+....
T Consensus 236 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---------------------- 293 (527)
T TIGR02275 236 NYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASK---------------------- 293 (527)
T ss_pred hhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc----------------------
Confidence 999874 6788999999999776 899999999999999999999999887652110
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...++ +++|.+++||+++++++.+++.+.+|.++++.||+||
T Consensus 294 ---------------~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE 335 (527)
T TIGR02275 294 ---------------SRYDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAE 335 (527)
T ss_pred ---------------cCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCc
Confidence 00112 3899999999999999999999999999999999998
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=309.91 Aligned_cols=309 Identities=20% Similarity=0.262 Sum_probs=246.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|...++.+||++|+++. ++ +.+||.|+.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA 93 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA 93 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 457999999999999999999864 43 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC-----hhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK-----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
|+++|++++|+++.++.+++.++++.+++++++++... .+.+... .........++..+..... .
T Consensus 94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~ 163 (547)
T PRK06087 94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPL-QNQLPQLQQIVGVDKLAPA---------T 163 (547)
T ss_pred HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHH-HhhCCCCcEEEEeCCcCCC---------c
Confidence 99999999999999999999999999999999998632 1122111 1122334455555432210 0
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
...++.++...............+++++|+|||||||.||+|.++|.+++.........+ ++..+|++++.+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~ 238 (547)
T PRK06087 164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG 238 (547)
T ss_pred CccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence 112344444332111122234678999999999999999999999999998877755555 778899999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 277 h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|.+.++|.++..++.....
T Consensus 239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~---------------------- 296 (547)
T PRK06087 239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEK---------------------- 296 (547)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhcccc----------------------
Confidence 9999876 7788999999999877 999999999999999999887777666542110
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...++ +++|.+++||+++++++.+.+.+. |+++++.||+||
T Consensus 297 ---------------~~~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE 337 (547)
T PRK06087 297 ---------------QPADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTE 337 (547)
T ss_pred ---------------CCCCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccc
Confidence 00112 389999999999999999998885 999999999998
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=309.11 Aligned_cols=312 Identities=19% Similarity=0.214 Sum_probs=249.5
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH
Q 014742 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 38 ~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~ 117 (419)
.|...+++.++|.++++.+||++|+++. + +.+||.||.+++.++|+.|.+.|+++|++|+++++|++++++
T Consensus 16 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~ 86 (542)
T PRK06155 16 LPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD 86 (542)
T ss_pred CCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence 4456888999999999999999999864 3 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
+++||+++|++++|+++.++.+++..+++.+++++++++.+....+.+..... ...+.++.++...... ....
T Consensus 87 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~ 159 (542)
T PRK06155 87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVS------VPAG 159 (542)
T ss_pred HHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cCcceEEEecCccccc------cccc
Confidence 99999999999999999999999999999999999999988776654433221 2345555555432100 0000
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
+ ...++.. ...........++++++++|||||||.||+|.++|.++..........+ ++.+++++++.+|++|
T Consensus 160 ~-~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~ 232 (542)
T PRK06155 160 W-STAPLPP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFH 232 (542)
T ss_pred c-chhhhcc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHH
Confidence 0 0111111 1111122344678999999999999999999999999988777655555 7888999999999999
Q ss_pred HHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 278 ~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
.+++..++.++..|+++++.+. ++..+++.|+++++|++.++|.++..|.+...
T Consensus 233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~------------------------- 287 (542)
T PRK06155 233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPA------------------------- 287 (542)
T ss_pred HHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcC-------------------------
Confidence 9999888899999999999877 89999999999999999999999988764210
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....+ +++|.++.|| +++.+.+.+++.+|+++++.||+||
T Consensus 288 ------------~~~~~~--------~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE 328 (542)
T PRK06155 288 ------------RESDRA--------HRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTE 328 (542)
T ss_pred ------------cccccc--------CceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccc
Confidence 000011 3788777655 5789999999999999999999998
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=311.22 Aligned_cols=319 Identities=24% Similarity=0.384 Sum_probs=248.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++++.+++.+|+++|+.+. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 30 ~~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~l 100 (573)
T PRK05605 30 GDTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFY 100 (573)
T ss_pred CcCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3558999999999999999999874 3 479999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCCh---hhHHH-------
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS---SQKKE------- 190 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------- 190 (419)
||+++|++++|+++.++.+++.+++..++++++|+++.....+.+.... .....++..+.... .....
T Consensus 101 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 178 (573)
T PRK05605 101 AVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPA 178 (573)
T ss_pred HHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeeccccccccccccccccccc
Confidence 9999999999999999999999999999999999988765544333221 12233333321100 00000
Q ss_pred -------HHHhCceeeeHHHHHhcCCCC----CCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhc
Q 014742 191 -------AEELGVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259 (419)
Q Consensus 191 -------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~ 259 (419)
..........|+++....... ........+++++++|||||||.||+|.+||+++...+......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--- 255 (573)
T PRK05605 179 LRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV--- 255 (573)
T ss_pred ccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc---
Confidence 000011234566655432111 122334578999999999999999999999999988776543322
Q ss_pred Ccc-CCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhc
Q 014742 260 GKV-CSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336 (419)
Q Consensus 260 ~~~-~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 336 (419)
.+ ...++++++.+|++|.+|+.. ++.++..|+++++.+. +++.+++.|+++++|++.++|.+++.+.+...
T Consensus 256 -~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~----- 329 (573)
T PRK05605 256 -PGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAE----- 329 (573)
T ss_pred -cccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcc-----
Confidence 11 234689999999999999876 6677999999999877 99999999999999999999999999875211
Q ss_pred cCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeecc
Q 014742 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG 416 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG 416 (419)
....++ +++|.+++||+++++++.+++++.++.++++.||
T Consensus 330 --------------------------------~~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG 369 (573)
T PRK05605 330 --------------------------------ERGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYG 369 (573)
T ss_pred --------------------------------ccCCCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccc
Confidence 011112 2899999999999999999999988999999999
Q ss_pred CCC
Q 014742 417 MVE 419 (419)
Q Consensus 417 ~tE 419 (419)
+||
T Consensus 370 ~TE 372 (573)
T PRK05605 370 LTE 372 (573)
T ss_pred cch
Confidence 998
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=314.02 Aligned_cols=315 Identities=19% Similarity=0.201 Sum_probs=239.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH
Q 014742 36 LESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (419)
Q Consensus 36 ~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~ 115 (419)
-+++....++.+.|.+.++.+|+++|+++. ++. +.+||.||.++++++|+.|++.|+++|++|+++++|++++
T Consensus 7 ~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~ 79 (540)
T PRK05857 7 QAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPET 79 (540)
T ss_pred cccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHH
Confidence 455666779999999999999999999864 432 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 116 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+++++||+++|++++|+++.++.+++.++++.++++++|++....... ..+......++. +..+......
T Consensus 80 ~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~-------- 149 (540)
T PRK05857 80 YLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIPV-IAVDIAAVTR-------- 149 (540)
T ss_pred HHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccce-eEeecccccc--------
Confidence 999999999999999999999999999999999999999998654221 111111112222 2222111000
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh
Q 014742 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (419)
. +.+..... .........++++++++|||||||.||||.++|+++.++........ ........++++++.+|+
T Consensus 150 --~--~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ 223 (540)
T PRK05857 150 --E--SEHSLDAA-SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPLPA 223 (540)
T ss_pred --c--cccccccc-ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecCCc
Confidence 0 00000000 01112234678999999999999999999999999987655432210 001245567899999999
Q ss_pred HHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 276 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 276 ~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
+|.+++...+.+++.|+++++.+.++..+++.|+++++|+++++|.+++.++....
T Consensus 224 ~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~------------------------ 279 (540)
T PRK05857 224 THIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELK------------------------ 279 (540)
T ss_pred cccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccc------------------------
Confidence 99999887888899999988765689999999999999999999999999865211
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....++ +++|.+++||++++....++ .+.+|+++++.||+||
T Consensus 280 -------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~-~~~~g~~i~~~YG~TE 321 (540)
T PRK05857 280 -------------SANATV--------PSLRLVGYGGSRAIAADVRF-IEATGVRTAQVYGLSE 321 (540)
T ss_pred -------------cCCCcC--------ccceEEEEcCccCCchhHHH-HHHhCCeeecccCCCc
Confidence 001112 38999999999998877754 4567999999999998
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=307.64 Aligned_cols=312 Identities=23% Similarity=0.304 Sum_probs=252.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|...++.+|+++|+++. + ..+||.||.+++.++|+.|.+.|+++||+|+++++|+.+++++++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~ 79 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4678999999999999999999875 3 579999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++..+++.++++++|++......+.+...... ...+........ .........
T Consensus 80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~ 151 (523)
T PRK08316 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLD 151 (523)
T ss_pred HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhh
Confidence 999999999999999999999999999999999999887766654332211 111111110000 000112344
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+.++...............+++++++|||||||.||+|.++|.+++..+......+ ++..+|++++.+|++|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g 226 (523)
T PRK08316 152 FADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ 226 (523)
T ss_pred HHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence 45444433222233445678999999999999999999999999998877766555 7888999999999999999
Q ss_pred HHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 281 ~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
+.. ++.++..|+++++.+. +++.+++.++++++|++.++|.++..+++.
T Consensus 227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------- 277 (523)
T PRK08316 227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRH----------------------------- 277 (523)
T ss_pred HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcC-----------------------------
Confidence 876 5667899999999876 999999999999999999999999888652
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
...+..++ .++|.+++||++++.++.+.+++.+ +.++++.||+||
T Consensus 278 --------~~~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE 323 (523)
T PRK08316 278 --------PDFDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTE 323 (523)
T ss_pred --------cccccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccc
Confidence 11111222 2899999999999999999999988 789999999998
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=323.68 Aligned_cols=305 Identities=17% Similarity=0.232 Sum_probs=238.2
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd-~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
+..|+.+.|...++.+|+ ++++.+. +. +.+||+||.++++++|++|++. +++||+|+++++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV---NF-----TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC---CC-----CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 457899999999999998 5777532 11 4799999999999999999987 599999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhh-cCccCCCCccEEEEecCCChhhHHHHHHhCcee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
+||+++|++++|+++.++.+++.++++.++++++|++.+..+.... ........... +.+++....
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~------------ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKDD------------ 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhhh------------
Confidence 9999999999999999999999999999999999998765432100 01111111222 222211000
Q ss_pred eeHHHH----HhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecC
Q 014742 199 FSWEEF----LQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (419)
Q Consensus 199 ~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (419)
..+.+. ..............++++++++|||||||.||||++||.++...+......+ +++.+|++++.+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 414 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP 414 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence 001000 0000001111234578999999999999999999999999998887766655 7888999999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 275 LAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
++|.+++.. ++.++..|+++++.+. +...+++.+.++++|+++++|+++..+.+.
T Consensus 415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~---------------------- 472 (718)
T PRK08043 415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF---------------------- 472 (718)
T ss_pred chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh----------------------
Confidence 999999876 7789999999999874 778889999999999999999998776431
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+..++ ++||.+++||+++++++.+.|++.+|+++++.||+||
T Consensus 473 -----------------~~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE 515 (718)
T PRK08043 473 -----------------ANPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE 515 (718)
T ss_pred -----------------cCcccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCccc
Confidence 011122 3899999999999999999999999999999999998
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=312.33 Aligned_cols=312 Identities=20% Similarity=0.266 Sum_probs=240.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
.++.++|.++++.+|+++|+.+. + ..+||.||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999864 2 47999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCC----CCccEEEEecCCChhhHHHHHHhCcee
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC----LYLKTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
+++|++++|+++.++.+++.++++.+++++||++.+....+.+...... .....++.+++...... .....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 159 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSSEE 159 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Ccccc
Confidence 9999999999999999999999999999999998876654433221110 01123344432211000 00112
Q ss_pred eeHHHHHhcCCCC-C----CCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEec
Q 014742 199 FSWEEFLQLGTLD-C----ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273 (419)
Q Consensus 199 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (419)
.+|.++....... . ......++++++|+|||||||.||+|+++|.++.......... ......+++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~-----~~~~~~~~~l~~~ 234 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIG-----WEMGTCPVYLWTL 234 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhh-----cCCCCCCeEEecC
Confidence 3455555433111 0 0112356899999999999999999999999976544332222 2455678899999
Q ss_pred ChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhh
Q 014742 274 PLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352 (419)
Q Consensus 274 pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (419)
|++|.+++...+.++..|+++++.+. ++..+++.|+++++|++.++|.++..|.+...
T Consensus 235 pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------- 293 (579)
T PLN03102 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS--------------------- 293 (579)
T ss_pred ChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcc---------------------
Confidence 99999998877778889999988876 88999999999999999999999999865210
Q ss_pred hhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+.... .+++.+++||+++++.+.+++++ +|.++++.||+||
T Consensus 294 ----------------~~~~~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE 335 (579)
T PLN03102 294 ----------------LDLSPR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTE 335 (579)
T ss_pred ----------------cccCCc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccc
Confidence 000001 26778899999999999999877 5999999999998
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=309.78 Aligned_cols=319 Identities=20% Similarity=0.260 Sum_probs=251.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|+.+++.+||++++.+. . .+..+++||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~ 81 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW 81 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Confidence 34569999999999999999999853 1 123468999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++..+.+++.++++.+++++++++....+.+.+.... ...++.++...+..... ........
T Consensus 82 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (542)
T PRK06018 82 YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADK-LPSVERYVVLTDAAHMP----QTTLKNAV 156 (542)
T ss_pred HHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhh-CCCccEEEEeccccccc----ccCccccc
Confidence 99999999999999999999999999999999999998876665443322 23445555544321100 00001233
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHH-HHh-hhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
.|.++..............++++++++|||||||.||+|.+||.+.+ ... ......+ ++..+|+++...|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h 231 (542)
T PRK06018 157 AYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFH 231 (542)
T ss_pred cHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHH
Confidence 56666554422222334566889999999999999999999999743 222 2222233 6778899999999999
Q ss_pred HHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 278 IYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 278 ~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
.+++...+.++..|+++++... ++..+++.++++++|.+.++|+++..+.+....
T Consensus 232 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~----------------------- 288 (542)
T PRK06018 232 ANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEK----------------------- 288 (542)
T ss_pred HhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccc-----------------------
Confidence 9998877788999999998753 889999999999999999999999998653211
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. ..++ +++|.+++||+++++++.++|++ ++.++++.||+||
T Consensus 289 ----------~----~~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE 329 (542)
T PRK06018 289 ----------E----GLKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTE 329 (542)
T ss_pred ----------c----CCCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccc
Confidence 0 0112 38999999999999999999999 8999999999998
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=314.38 Aligned_cols=310 Identities=17% Similarity=0.214 Sum_probs=247.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH
Q 014742 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 38 ~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~ 117 (419)
.+....++.+.|.++++.+|+++|+++. + +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++
T Consensus 32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~ 102 (600)
T PRK08279 32 TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA 102 (600)
T ss_pred CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence 3356789999999999999999999975 3 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
+++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+..... .....++..++.... .
T Consensus 103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 171 (600)
T PRK08279 103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------D 171 (600)
T ss_pred HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------c
Confidence 99999999999999999999999999999999999999988766654433222 122233333221100 0
Q ss_pred eeeHHHHHhcC---CC--CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEe
Q 014742 198 CFSWEEFLQLG---TL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 272 (419)
Q Consensus 198 ~~~~~~~~~~~---~~--~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (419)
...+.++.... .. ........++++++|+|||||||.||||.+||.++..++......+ +++++|++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~ 246 (600)
T PRK08279 172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC 246 (600)
T ss_pred cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence 11233333221 11 1122334568999999999999999999999999999998876666 88899999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.+++...
T Consensus 247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~------------------- 307 (600)
T PRK08279 247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPP------------------- 307 (600)
T ss_pred cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCC-------------------
Confidence 99999999986 5567888999999877 99999999999999999999999988764100
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCC-ceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE 419 (419)
..... . .++|.+ +|+++++++.++|.+.++. .+++.||+||
T Consensus 308 ---------------~~~~~---~--------~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE 349 (600)
T PRK08279 308 ---------------KPTDR---D--------HRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASE 349 (600)
T ss_pred ---------------Ccccc---C--------cceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccc
Confidence 00000 1 267754 4778999999999999976 5999999998
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=309.34 Aligned_cols=309 Identities=22% Similarity=0.226 Sum_probs=254.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
...+|+.+.|..++..+|+++|+.+. + +.+||.||.+.++++|++|.+.|+++|++|+++++|++++++++
T Consensus 14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45788999999999999999999865 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++..+.+++..+++.+++++++++......+.. .....+..+.++..++... ....
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~ 153 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVL 153 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------cccc
Confidence 9999999999999999999999999999999999999876654422 2223344555665543211 1234
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccC-CCCcEEEEecChHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSFLPLAHI 278 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~ 278 (419)
+++++...............+++++++|||||||.||+|.++|+++...+......+ +. ..++++++.+|++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~ 228 (542)
T PRK07786 154 GYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI 228 (542)
T ss_pred CHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence 566665544222233344567899999999999999999999999998887765555 44 567899999999999
Q ss_pred HHHHHHHHHHhcCceEEEeC--C-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 279 YDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
+|+..++.++..|+++++.+ . ++..+++.|+++++|.++++|.++..++.....
T Consensus 229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------- 285 (542)
T PRK07786 229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA----------------------- 285 (542)
T ss_pred HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCccc-----------------------
Confidence 99977889999999999875 2 899999999999999999999999998652110
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
. ... .++|.+++||+++++++++++++.+ +.++++.||+||
T Consensus 286 ----------~--~~~-----------~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE 327 (542)
T PRK07786 286 ----------R--PRD-----------LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTE 327 (542)
T ss_pred ----------C--ccC-----------cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccc
Confidence 0 000 2799999999999999999999998 789999999998
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=305.88 Aligned_cols=302 Identities=26% Similarity=0.411 Sum_probs=228.7
Q ss_pred HHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCe
Q 014742 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (419)
Q Consensus 49 l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 128 (419)
|+++|+++||++|+++. ++ +.+||+|+.++++++|..|+++|+++|++|+++++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 57899999999999971 23 68999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCChhHHHHHHhhcCceEEEE----eCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHH
Q 014742 129 YVPLYDTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEF 204 (419)
Q Consensus 129 ~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (419)
++|+++.++.+++.++++.+++++||+ +......+..... .......++.++...... .+.+
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~ 138 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFK-QEDPSSSIIILDRDDLPK-------------KEAL 138 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHT-TSTTTEEEEEESHSSCTT-------------CHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhc-cccccccccccccccccc-------------cccc
Confidence 999999999999999999999999998 1111112222211 112334555555332110 0001
Q ss_pred HhcC-CCCCCCCC-CCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH-
Q 014742 205 LQLG-TLDCELPP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ- 281 (419)
Q Consensus 205 ~~~~-~~~~~~~~-~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~- 281 (419)
.... ..... .. ..++++++++|||||||.||+|.++|+++...+..+. +.. ..+++ |++++.+|++|.+|+
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~-~~~~~--d~~l~~~p~~~~~g~~ 212 (417)
T PF00501_consen 139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPE-YFGLG--DRILSFLPLSHIFGLI 212 (417)
T ss_dssp HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHH-TTTTT--TEEEESS-TTSHHHHH
T ss_pred cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--ccc-ccccC--ceEEeecccccccccc
Confidence 0000 00000 00 0568999999999999999999999999999988754 111 11333 699999999999999
Q ss_pred HHHHHHHhcCceEEEeCC-C---HHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 282 IIETHCIHKGCSIGFWRG-D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~-~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
..++.++..|+++++++. + ++.+++.++++++|+++++|.++..+++..+.. .
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~---------------------- 269 (417)
T PF00501_consen 213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T---------------------- 269 (417)
T ss_dssp HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H----------------------
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-c----------------------
Confidence 558999999999999987 3 577899999999999999999999997621100 0
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCC-ceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE 419 (419)
.....++ +++|.+++||+++++++.+++++.++. +|++.||+||
T Consensus 270 ----------~~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE 314 (417)
T PF00501_consen 270 ----------KISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTE 314 (417)
T ss_dssp ----------HGTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGG
T ss_pred ----------ccccccc--------ccccccccccccCChhhccccccccccccceecccccc
Confidence 0001123 379999999999999999999999987 9999999998
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=308.03 Aligned_cols=315 Identities=19% Similarity=0.237 Sum_probs=243.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|..+++.+|+++|+++. ++. +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (534)
T PRK05852 13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL 85 (534)
T ss_pred hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence 45778999999999999999999864 332 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++............ ...+..+.+....... . .....
T Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~-~~~~~ 156 (534)
T PRK05852 86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS-----G-GTLSV 156 (534)
T ss_pred HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc-----c-ccccc
Confidence 9999999999999999999999999999999999998754322111110 0111112221110000 0 00000
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.+...... ...........++.++++|||||||.||||.++|+++...+......+ .+..+|++++.+|++|.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~ 230 (534)
T PRK05852 157 HLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHGH 230 (534)
T ss_pred ccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchhH
Confidence 01100000 001111122346789999999999999999999999999888876666 788899999999999999
Q ss_pred HHHH-HHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 280 DQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 280 g~~~-~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
++.. ++.++..|+++++++. ++..+++.|+++++|.++++|.++..|.+.....
T Consensus 231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 288 (534)
T PRK05852 231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE---------------------- 288 (534)
T ss_pred HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccc----------------------
Confidence 9986 7788999999998653 8899999999999999999999999986531100
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....++ +++|.+.++|+++++++++.+.+.+|.++++.||+||
T Consensus 289 -------------~~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE 331 (534)
T PRK05852 289 -------------PSGRKP--------AALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTE 331 (534)
T ss_pred -------------cccccC--------CCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccc
Confidence 000011 3899999999999999999999999999999999998
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=315.85 Aligned_cols=319 Identities=20% Similarity=0.237 Sum_probs=241.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..|+.+.+..+ .+|+++|+++. + +.+..+.+||.||.++++++|+.|++.|+++||+|+++++|++++++++||
T Consensus 85 ~~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA 158 (655)
T PRK03584 85 RLNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLA 158 (655)
T ss_pred EeeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34565555443 58999999986 3 344557899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcCccCCCCccEEEEecCCChhhHHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
|+++|++++|+++.++.+++.+.++.++++++|+++... +.+.+.. .....+..++.++...... ..
T Consensus 159 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---~~ 234 (655)
T PRK03584 159 TASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPAA---AA 234 (655)
T ss_pred HHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCcc---cc
Confidence 999999999999999999999999999999999987532 2221211 1223444555554321100 00
Q ss_pred HhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHH-hhhhhhhhhhcCccCCCCcEEE
Q 014742 193 ELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l 270 (419)
........|+++.... ...........+++++|+|||||||.||||+++|++++.. +......+ ++.++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 309 (655)
T PRK03584 235 AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFF 309 (655)
T ss_pred cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0011234566665422 2222233456789999999999999999999999987644 44433444 788899999
Q ss_pred EecChHHHHHHHHHHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHH
Q 014742 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345 (419)
Q Consensus 271 ~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (419)
+..++.|..+. .++.+|..|+++++.++ ++..+++.++++++|++.++|++++.+.+.
T Consensus 310 ~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~---------------- 372 (655)
T PRK03584 310 WYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA---------------- 372 (655)
T ss_pred EcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhc----------------
Confidence 99999887543 45688999999999753 789999999999999999999999887541
Q ss_pred HHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh--CCceeeeccCCC
Q 014742 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGMVE 419 (419)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE 419 (419)
...+ ....+++ +||.+++||+++++++.+++.+.+ ++.+++.||+||
T Consensus 373 ------------------~~~~-~~~~~l~--------sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE 421 (655)
T PRK03584 373 ------------------GLVP-GETHDLS--------ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTD 421 (655)
T ss_pred ------------------CCCc-cccCChh--------heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHh
Confidence 0000 1112333 899999999999999999999988 478999999998
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=304.74 Aligned_cols=315 Identities=19% Similarity=0.227 Sum_probs=249.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+++.++|+..++++||++|+.+. + ..++++.+||.||.++++++|++|.++|+++||+|+++++|+.+++++++|
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 568999999999999999999875 4 234457899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++.++++.++++++|++.+..+.+.+.........+.++..+..... .....++
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 153 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF 153 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence 99999999999999999999999999999999999987766554433333345555555442110 0123345
Q ss_pred HHHHhcCC-CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+++..... .........++++++++|||||||.||+|+++|.++.......... ..+..++++++.+|++|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~ 228 (517)
T PRK08008 154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQ-----CALRDDDVYLTVMPAFHIDC 228 (517)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhh-----cCCCCCCeEEEecCcHHHHH
Confidence 54433321 1112234456899999999999999999999999998654332221 25678899999999999877
Q ss_pred HHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 281 ~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
... ++.++..|+++++.++ ++..+++.++++++|++.++|.+++.++...
T Consensus 229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------------- 280 (517)
T PRK08008 229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP---------------------------- 280 (517)
T ss_pred HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCC----------------------------
Confidence 765 7788999999999987 9999999999999999999999998875410
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..+... . ++++.+..+ .++++++...|.+.+|.++++.||+||
T Consensus 281 ------~~~~~~---~--------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE 323 (517)
T PRK08008 281 ------PSANDR---Q--------HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTE 323 (517)
T ss_pred ------Cccccc---c--------ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccc
Confidence 000000 1 267777665 478999999999989999999999998
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=311.77 Aligned_cols=305 Identities=17% Similarity=0.222 Sum_probs=237.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCC----CceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKV----GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~----~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~ 117 (419)
..++.+.|...++.+|+++|+++. ++.+ ..++.+||.||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~ 81 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA 81 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence 467889999999999999999875 3311 123479999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC--hhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+++||+++|++++|+++.++.+++.++++.++++++|++... ...+.... ......++.++....
T Consensus 82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~---------- 148 (552)
T PRK09274 82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRLL---------- 148 (552)
T ss_pred HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheeccccccc----------
Confidence 999999999999999999999999999999999999997521 11111110 112223333322100
Q ss_pred ceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecC
Q 014742 196 VSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (419)
Q Consensus 196 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (419)
.....++++.... ..........++++++++|||||||.||+|.++|+++...+......+ ++.++|++++.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p 223 (552)
T PRK09274 149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP 223 (552)
T ss_pred cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence 0122344443222 122223344678999999999999999999999999999888876666 7888999999999
Q ss_pred hHHHHHHHHHHHHHhcCceEEEeC-------C-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHH
Q 014742 275 LAHIYDQIIETHCIHKGCSIGFWR-------G-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE 346 (419)
Q Consensus 275 l~h~~g~~~~l~~l~~G~~ivl~~-------~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (419)
++|.+++ ..|+++++.+ . ++..+++.|+++++|+++++|.+++.|.+....
T Consensus 224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------- 282 (552)
T PRK09274 224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEA-------------- 282 (552)
T ss_pred HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhh--------------
Confidence 9887653 4578887754 2 789999999999999999999999998763211
Q ss_pred HHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh--CCceeeeccCCC
Q 014742 347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGMVE 419 (419)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE 419 (419)
...++ +++|.+++||+++++++.+++++.+ |+++++.||+||
T Consensus 283 -----------------------~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 326 (552)
T PRK09274 283 -----------------------NGIKL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE 326 (552)
T ss_pred -----------------------cCCCC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccc
Confidence 01122 3899999999999999999999998 469999999998
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=303.36 Aligned_cols=295 Identities=22% Similarity=0.276 Sum_probs=240.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..+.++|...++.+||++|+.+. + +.+||.||.++++++|++|++ .|+.+|++|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46789999999999999999863 3 589999999999999999985 7999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++..+++.++++++++++.....+..... . .....++.+.+ +
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------L 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------h
Confidence 99999999999999999999999999999999998766544432211 1 12223333321 2
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
.++.... ........++++++++|||||||.||+|.++|.++..........+ +...+|++++.+|++|.+++
T Consensus 133 ~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 205 (496)
T PRK06839 133 KEIEDRK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGGI 205 (496)
T ss_pred HhhhccC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhhH
Confidence 2222211 1122234568899999999999999999999999977665544444 67789999999999999998
Q ss_pred HH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 282 ~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
.. ++.++..|+++++++. ++..+++.++++++|++.++|.+++.+++...
T Consensus 206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------- 257 (496)
T PRK06839 206 GLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSK---------------------------- 257 (496)
T ss_pred HHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc----------------------------
Confidence 76 6788999999998876 99999999999999999999999999865210
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....++ .++|.+++||+++++++.+.+++. |+++++.||+||
T Consensus 258 ---------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE 299 (496)
T PRK06839 258 ---------FETTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTE 299 (496)
T ss_pred ---------cccCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCC
Confidence 111112 389999999999999999999996 999999999998
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=305.51 Aligned_cols=309 Identities=18% Similarity=0.215 Sum_probs=245.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....|+.++|...++.+|+++++.+. + +.+||.||.++++++|+.|++.|+++|++|+++++|++++++++
T Consensus 4 ~~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~ 74 (528)
T PRK07470 4 RRVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESM 74 (528)
T ss_pred ccCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 45678999999999999999999864 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.+++++++++.+......... ........++.+..... ..
T Consensus 75 lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~ 141 (528)
T PRK07470 75 FAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR-AASPDLTHVVAIGGARA------------GL 141 (528)
T ss_pred HHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHH-hhCCcCceEEEeCCCcc------------cc
Confidence 999999999999999999999999999999999999987654433221 11223344444443211 23
Q ss_pred eHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 200 SWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.++++.... ..........++++++|+|||||||.||+|.++|+++...+......+ ..+....|+++..+|++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~ 218 (528)
T PRK07470 142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHG 218 (528)
T ss_pred cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhH
Confidence 455554433 222223345678999999999999999999999999976554322211 1145678999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 279 YDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
+++..++ .++.|++.++.+. +++.+++.|+++++|.+.++|.+++.+.+.
T Consensus 219 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------- 271 (528)
T PRK07470 219 AGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEH-------------------------- 271 (528)
T ss_pred HHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhC--------------------------
Confidence 9987544 5677888777653 899999999999999999999999988641
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+..+..++ +++|.+++||+++++...+++.+.+|.++++.||+||
T Consensus 272 -----------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE 316 (528)
T PRK07470 272 -----------PAVDRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGE 316 (528)
T ss_pred -----------cCcCCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcc
Confidence 10111112 3899999999999999999999988999999999998
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=301.64 Aligned_cols=288 Identities=15% Similarity=0.166 Sum_probs=235.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
+++.+.|.++++.+||++|+.+. + ..+||.||.++++++|++|.+.|. +|++|+++++|+++++++++||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999999864 3 479999999999999999999884 7999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (419)
+++|++++|+++.++.+++.+++..++++++|++......+... ...++..++ +.
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~------------------~~ 125 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEIDE------------------WK 125 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEehh------------------hh
Confidence 99999999999999999999999999999999998655433211 012222211 11
Q ss_pred HHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHH
Q 014742 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (419)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (419)
+................+++++|+|||||||.||||+++|++++.++......+ .+..+|+++...|++|.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~ 200 (487)
T PRK07638 126 RMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLY 200 (487)
T ss_pred hhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHH
Confidence 111111111111223356789999999999999999999999998888765555 788899999999999998877
Q ss_pred HHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCC
Q 014742 283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361 (419)
Q Consensus 283 ~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (419)
.++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.
T Consensus 201 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------------- 248 (487)
T PRK07638 201 GAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKE-------------------------------- 248 (487)
T ss_pred HHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC--------------------------------
Confidence 78889999999999877 999999999999999999999999998651
Q ss_pred CCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.... .+.+.++++|+++++++.+++++.+ +.++++.||+||
T Consensus 249 -----~~~~------------~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE 290 (487)
T PRK07638 249 -----NRVI------------ENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASE 290 (487)
T ss_pred -----cCcC------------CceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCc
Confidence 0000 1455577889999999999999998 789999999998
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=303.68 Aligned_cols=334 Identities=22% Similarity=0.339 Sum_probs=251.1
Q ss_pred cceec-CccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCC
Q 014742 24 PVYRC-IYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG 102 (419)
Q Consensus 24 ~~~~~-~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g 102 (419)
..||. .+|+ ++....++.++|.++++.+|+++|+.+. + +.+||.||.++++++|.+|.+.|+++|
T Consensus 6 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g 71 (541)
T TIGR03205 6 QFYPEGVRWD-----ATIARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKD 71 (541)
T ss_pred cccCCCCCcc-----cCCCCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34555 7775 3345668999999999999999999864 2 479999999999999999999999999
Q ss_pred CeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC--hhhHhhcCccCCCCccEEEEe
Q 014742 103 DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSF 180 (419)
Q Consensus 103 d~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~ 180 (419)
|+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|+++.. .....+.... ..+..+++.
T Consensus 72 ~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~ 149 (541)
T TIGR03205 72 ASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVC 149 (541)
T ss_pred CEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEe
Confidence 999999999999999999999999999999999999999999999999999998631 1112121111 123344443
Q ss_pred cCCChhhHHH--H-HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhh
Q 014742 181 ANVSSSQKKE--A-EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257 (419)
Q Consensus 181 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~ 257 (419)
+......... . ........+++++..............++++++++|||||||.||+|+++|.++....... ..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~ 228 (541)
T TIGR03205 150 EDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWG 228 (541)
T ss_pred cccccccccccccccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-Hhhc
Confidence 3221000000 0 0001124456666554322222334567899999999999999999999999987654321 1110
Q ss_pred -hcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHh
Q 014742 258 -VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334 (419)
Q Consensus 258 -~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 334 (419)
.........+++++.+|++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|.++..+.+.
T Consensus 229 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----- 303 (541)
T TIGR03205 229 KPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAND----- 303 (541)
T ss_pred ccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhC-----
Confidence 00112234578999999999999876 6778999999988876 999999999999999999999999887541
Q ss_pred hccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeee
Q 014742 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG 414 (419)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~ 414 (419)
+.....++ .++|.+++||+++++++.+++.+.++.++++.
T Consensus 304 --------------------------------~~~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~ 343 (541)
T TIGR03205 304 --------------------------------PSLEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSG 343 (541)
T ss_pred --------------------------------ccccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecc
Confidence 00111122 28999999999999999999999889999999
Q ss_pred ccCCC
Q 014742 415 YGMVE 419 (419)
Q Consensus 415 YG~tE 419 (419)
||+||
T Consensus 344 YG~TE 348 (541)
T TIGR03205 344 WGMTE 348 (541)
T ss_pred ccccc
Confidence 99998
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=301.73 Aligned_cols=302 Identities=21% Similarity=0.349 Sum_probs=246.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|...+ .+|+++++... ++ +.+||.||.++++++|..|++.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la 72 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA 72 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 467899999999 99999999864 33 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++..+++.+++++++++......+....... ....++.++.... ..+
T Consensus 73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~ 137 (504)
T PRK07514 73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA--GAPHVETLDADGT-------------GSL 137 (504)
T ss_pred HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc--CCceEEEecCCCc-------------ccH
Confidence 9999999999999999999999999999999999987766554432211 2222444433211 112
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
.+...............++++++++|||||||.||+|.++|.++...+......+ ++..+|++++.+|++|.+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 212 (504)
T PRK07514 138 LEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGL 212 (504)
T ss_pred HHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHH
Confidence 2222111111222344678999999999999999999999999999887766655 78889999999999999998
Q ss_pred HH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 282 ~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
.. ++.++..|+++++.+. ++..+++.+ .++|.+.++|.++.++++.
T Consensus 213 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~------------------------------ 260 (504)
T PRK07514 213 FVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQE------------------------------ 260 (504)
T ss_pred HHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcC------------------------------
Confidence 76 7788999999999887 999999999 4799999999999988641
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+..+...+ +++|.+++||+++++++.+.|++.++.++++.||+||
T Consensus 261 -------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 305 (504)
T PRK07514 261 -------PRLTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTE 305 (504)
T ss_pred -------CCCCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeeccccc
Confidence 11111122 3899999999999999999999999999999999998
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=304.72 Aligned_cols=319 Identities=20% Similarity=0.297 Sum_probs=242.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..|+.+.|...++.+|+++|+++. + +.+||.||.++++++|+.|.+ .|+++||+|+++++|++++++++|
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~l 93 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999864 3 479999999999999999997 699999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCC--h-hhHHHHH-----
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--S-SQKKEAE----- 192 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~----- 192 (419)
||+++|++++|+++..+.+++.++++.++++++|++......+.+.... ...+.++..+... . .......
T Consensus 94 a~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK05677 94 GAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVVKH 171 (562)
T ss_pred HHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccchhh
Confidence 9999999999999999999999999999999999987765544333221 1233333322110 0 0000000
Q ss_pred ------H-hCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC
Q 014742 193 ------E-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (419)
Q Consensus 193 ------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (419)
. .......+.+..... ..........++++++++|||||||.||||.++|.++...+......+ .....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~ 248 (562)
T PRK05677 172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GSNLN 248 (562)
T ss_pred ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---ccCCC
Confidence 0 000122344443332 111222234578999999999999999999999999988766554433 11222
Q ss_pred -CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCch
Q 014742 265 -EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340 (419)
Q Consensus 265 -~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 340 (419)
..+++++.+|++|.+++.. ++..+..|++.++.+. ++..+++.|+++++|.++++|.++..++..
T Consensus 249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----------- 317 (562)
T PRK05677 249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN----------- 317 (562)
T ss_pred CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhC-----------
Confidence 3468899999999999876 6677888888777654 899999999999999999999999887641
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
......++ .++|.+++||+++++++.+.|++.+|+++++.||+||
T Consensus 318 --------------------------~~~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE 362 (562)
T PRK05677 318 --------------------------EAFRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTE 362 (562)
T ss_pred --------------------------cccccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccc
Confidence 00111122 2899999999999999999999988999999999998
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=317.29 Aligned_cols=285 Identities=18% Similarity=0.228 Sum_probs=232.7
Q ss_pred CCHHHHHHHHHHh--CCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 43 ESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 43 ~tl~~~l~~~a~~--~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
.|+.++|.+.+.. +||++|++.. ..+||.||.++++++|+.|++.|+++|++|+++++|+++++++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3788999988886 7999999742 259999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.++++++|++....+.+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999987544322110 000 0
Q ss_pred HHHHHhcC--CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhh-hhhhhcCccCCCCcEEEEecChHH
Q 014742 201 WEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD-QMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
..++.... ..........++++++++|||||||.||||+++|.++...+..+. ..+ .+...|++++..|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 198 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF 198 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence 00111110 011111234568899999999999999999999999988776543 234 6778899999999999
Q ss_pred HHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.++..|+++++.+. ++..++..+.++++|+++++|.++.++++...
T Consensus 199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----------------------- 255 (705)
T PRK06060 199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS----------------------- 255 (705)
T ss_pred hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc-----------------------
Confidence 988864 7788999999999874 88889999999999999999999998865210
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
...+ .++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 256 ----------------~~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE 297 (705)
T PRK06060 256 ----------------PDSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTE 297 (705)
T ss_pred ----------------cccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccc
Confidence 0012 2899999999999999999999988 589999999998
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=304.46 Aligned_cols=313 Identities=23% Similarity=0.363 Sum_probs=246.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|.+.++++|+++|+++. +.+ +.+||.||.++++++|++|.+.|+++|++|+++++|++++++++
T Consensus 15 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 87 (558)
T PRK12583 15 LLTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQ 87 (558)
T ss_pred cccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 34568999999999999999999864 332 57999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh-----hHhhcCc------------cCCCCccEEEEecC
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP------------RCCLYLKTIVSFAN 182 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~ 182 (419)
+||+++|++++|+++..+.+++..+++.++++++|++..... .+..... ...+.+..++..+.
T Consensus 88 ~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (558)
T PRK12583 88 FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP 167 (558)
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC
Confidence 999999999999999999999999999999999999865321 1111000 01122233333332
Q ss_pred CChhhHHHHHHhCceeeeHHHHHhcCCC------CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhh
Q 014742 183 VSSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (419)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~ 256 (419)
... .....|+++...... ........++++++++|||||||.||+|.++|.++..++......+
T Consensus 168 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~ 237 (558)
T PRK12583 168 APP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL 237 (558)
T ss_pred CCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence 211 123345444332210 1112234578899999999999999999999999998888766666
Q ss_pred hhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 014742 257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 333 (419)
Q Consensus 257 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 333 (419)
++..+|++++.+|++|.+|... ++.++..|++++++.. ++..+++.++++++|++.++|.++..++....
T Consensus 238 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~-- 310 (558)
T PRK12583 238 -----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQ-- 310 (558)
T ss_pred -----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc--
Confidence 7888999999999999999876 7788999999997654 89999999999999999999999987654100
Q ss_pred hhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC-Ccee
Q 014742 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLT 412 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~-~~v~ 412 (419)
....++ +++|.+++||+++++++.+++.+.++ ..++
T Consensus 311 -----------------------------------~~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~ 347 (558)
T PRK12583 311 -----------------------------------RGNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQ 347 (558)
T ss_pred -----------------------------------ccCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCccee
Confidence 011112 28999999999999999999999886 4699
Q ss_pred eeccCCC
Q 014742 413 QGYGMVE 419 (419)
Q Consensus 413 ~~YG~tE 419 (419)
+.||+||
T Consensus 348 ~~YG~tE 354 (558)
T PRK12583 348 IAYGMTE 354 (558)
T ss_pred ccccccc
Confidence 9999998
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=280.86 Aligned_cols=309 Identities=18% Similarity=0.201 Sum_probs=266.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..+++.+.|...|.++||++|+++. + +.+||.+|+++++++|.+|++.|+++||+|.+.+||..+|++.+|
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F 96 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF 96 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence 4789999999999999999999963 3 579999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC----hhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
|++++|+.+|..-|.....||.+..+.++++..|++... ...+.+......+.++.+++.++.+..
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP---------- 166 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence 999999999999899999999999999999999998642 233344344455788888888654321
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
...+..+........+.++.+++++++...+.||||.||.+..||.....+++...+.. ++++++++++.+|..
T Consensus 167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A 240 (542)
T COG1021 167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA 240 (542)
T ss_pred -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence 11223333333445556677889999999999999999999999999999999977766 899999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 277 h~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
|.|.+++ .+..++.|+++|+.+. ++...+-+|+++++|+...+|.....+++.
T Consensus 241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa------------------------ 296 (542)
T COG1021 241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQA------------------------ 296 (542)
T ss_pred cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHh------------------------
Confidence 9999997 7889999999999987 999999999999999999999999988762
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..++..+++ |||++.+||+.+++...+++...+|+.+-+.+||.|
T Consensus 297 -------------~e~~~~~Ls--------SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAE 341 (542)
T COG1021 297 -------------AEWERADLS--------SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAE 341 (542)
T ss_pred -------------hhcccCCch--------heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhh
Confidence 234555565 999999999999999999999999999999999987
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=310.29 Aligned_cols=319 Identities=17% Similarity=0.155 Sum_probs=236.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.+.. +.++++|+++. + +++..+.+||.||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus 86 ~~n~~~~~~~---~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA 158 (652)
T TIGR01217 86 RLNYAENLLR---AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA 158 (652)
T ss_pred eeeHHHHHhc---cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 4455555544 35789999886 3 344557899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCC---------hhhHhhcCccCCCCccEEEEecCCChhhHHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
|+++|++++|+++.++.+++.++++.++++++|+++.. .+.+.++. ...+.++.+++++..........
T Consensus 159 ~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~- 236 (652)
T TIGR01217 159 TASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRETEAP- 236 (652)
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcccccc-
Confidence 99999999999999999999999999999999998753 22222222 22244555665543211000000
Q ss_pred HhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHH-HhhhhhhhhhhcCccCCCCcEEE
Q 014742 193 ELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA-EVLSVDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~-~~~~~~~~~~~~~~~~~~~d~~l 270 (419)
.......|+++.... ...........+++++|+|||||||.||||+++|++++. ........+ ++.++|+++
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 310 (652)
T TIGR01217 237 -KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLF 310 (652)
T ss_pred -cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEE
Confidence 001234567765442 112222344568999999999999999999999998654 333333333 788899999
Q ss_pred EecChHHHHHHHHHHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHH
Q 014742 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345 (419)
Q Consensus 271 ~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (419)
+..|+.|..+ ..++.+|+.|+++++.++ ++..+++.++++++|++.++|.++..+.+.
T Consensus 311 ~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~---------------- 373 (652)
T TIGR01217 311 YYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA---------------- 373 (652)
T ss_pred EeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc----------------
Confidence 9999998753 345688999999999853 678999999999999998777777665320
Q ss_pred HHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC--CceeeeccCCC
Q 014742 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG--APLTQGYGMVE 419 (419)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~--~~v~~~YG~tE 419 (419)
.....+..+++ +||.+++||+++++++.+++.+.++ +.+.+.||+||
T Consensus 374 -------------------~~~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE 422 (652)
T TIGR01217 374 -------------------GVHPARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTD 422 (652)
T ss_pred -------------------CCCccccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHH
Confidence 00001222343 8999999999999999999999885 45778999997
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=303.34 Aligned_cols=313 Identities=22% Similarity=0.355 Sum_probs=248.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|.+.++.+|+++|+++. +++ +.+||.||.++++++|+.|.+.|+++|++|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 85 (559)
T PRK08315 13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ 85 (559)
T ss_pred hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 45668999999999999999999875 332 57999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh-----hHhhcCcc------------CCCCccEEEEecC
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLPR------------CCLYLKTIVSFAN 182 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------~~~~~~~~~~~~~ 182 (419)
+||+++|++++|+++..+.+++..+++.++++++|++..... .+.+.... ..+....++..+.
T Consensus 86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (559)
T PRK08315 86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD 165 (559)
T ss_pred HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence 999999999999999999999999999999999999876432 11111100 0112333444332
Q ss_pred CChhhHHHHHHhCceeeeHHHHHhcCC----C--CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhh
Q 014742 183 VSSSQKKEAEELGVSCFSWEEFLQLGT----L--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (419)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~ 256 (419)
... .....++++..... . ........++++++++|||||||.||+|.++|.++..++......+
T Consensus 166 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~ 235 (559)
T PRK08315 166 EKH----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM 235 (559)
T ss_pred cCC----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence 210 11234444433220 0 1112234568899999999999999999999999998888876666
Q ss_pred hhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 014742 257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 333 (419)
Q Consensus 257 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 333 (419)
++.++|+++..+|++|.+++.. ++.++..|+++++... ++..+++.++++++|.+.++|.++..++..
T Consensus 236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~---- 306 (559)
T PRK08315 236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDH---- 306 (559)
T ss_pred -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhC----
Confidence 7888999999999999999876 7788999999996543 999999999999999999999999887641
Q ss_pred hhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCc-ee
Q 014742 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT 412 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~-v~ 412 (419)
+..+...+ +++|.+++||+++++++.+.+.+.++.. ++
T Consensus 307 ---------------------------------~~~~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~ 345 (559)
T PRK08315 307 ---------------------------------PDFARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT 345 (559)
T ss_pred ---------------------------------cccCCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence 11111112 3899999999999999999999988765 99
Q ss_pred eeccCCC
Q 014742 413 QGYGMVE 419 (419)
Q Consensus 413 ~~YG~tE 419 (419)
+.||+||
T Consensus 346 ~~YG~tE 352 (559)
T PRK08315 346 IAYGMTE 352 (559)
T ss_pred EEEcccc
Confidence 9999998
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=302.24 Aligned_cols=306 Identities=20% Similarity=0.231 Sum_probs=245.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..|+.++|.++++++|+++|+++. + +.+||.||.++++++++.|.+.|+++|++|+++++|+++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4568999999999999999999864 2 479999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC-ChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
||+++|++++|+++..+.+++..++..++++.++++.. ......... .....+..++.++...... .
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~ 148 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL-ARVPSLKHVLTLGPVPDGV-----------D 148 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHh-hhcCCceEEEEeCCccchh-----------h
Confidence 99999999999999999999999999999999999876 333222211 1123334445444321100 0
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.++.... ...........++++++++|||||||.||+|.++|.++...+......+ ++..+|++++.+|++|.+
T Consensus 149 ~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~ 222 (524)
T PRK06188 149 LLAAAAK-FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG 222 (524)
T ss_pred HHHhhhc-cCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence 0111110 1111111222456699999999999999999999999999888766655 788899999999999998
Q ss_pred HHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
++. ++.+++.|+++++.+. ++..+++.++++++|+++++|.++..+++.
T Consensus 223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~----------------------------- 272 (524)
T PRK06188 223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDH----------------------------- 272 (524)
T ss_pred hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhC-----------------------------
Confidence 864 5677999999999987 999999999999999999999999998652
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+.....++ +++|.+++||++++++....+.+.++..+++.||+||
T Consensus 273 --------~~~~~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 317 (524)
T PRK06188 273 --------PDLRTRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTE 317 (524)
T ss_pred --------cCccCCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccc
Confidence 10111122 3899999999999999999998888999999999998
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=297.68 Aligned_cols=298 Identities=18% Similarity=0.224 Sum_probs=240.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+.++.+.|..+++.+|+++|+++. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++.++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 467889999999999999999864 3 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++.++++.+++++++++.+..... .. ....+.++..... .+
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~-------~~~~~~~~~~~~~-------------~~ 130 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIV-AL-------ETPKIVIDAAAQA-------------DS 130 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhh-hc-------ccceEEecCcccc-------------hh
Confidence 999999999999999999999999999999999987654322 10 1122222221100 01
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
..+..............++++++++|||||||.||+|.++|.++...+......+ ++..+++++...|++|.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~ 205 (497)
T PRK06145 131 RRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGAF 205 (497)
T ss_pred HHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhHH
Confidence 1111111111112234678999999999999999999999999987665544444 77888999999999999998
Q ss_pred HH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 282 ~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
.. .+.++..|+++++.+. ++..+++.++++++|.+.++|.+++.++..
T Consensus 206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~------------------------------ 255 (497)
T PRK06145 206 DLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTV------------------------------ 255 (497)
T ss_pred HHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcC------------------------------
Confidence 76 5778999999999877 999999999999999999999999998651
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
......++ +++|.+++||+++++++.+++.+.+ +.++++.||+||
T Consensus 256 -------~~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE 301 (497)
T PRK06145 256 -------PDRDRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTE 301 (497)
T ss_pred -------CCcccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcc
Confidence 00111122 2899999999999999999999988 678999999998
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=301.65 Aligned_cols=306 Identities=16% Similarity=0.182 Sum_probs=245.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+.++.++|..+++ ||++|+++. + +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG----E-----RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 5689999999887 999999964 2 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh----hhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++++.+.....++..+++.+++++++++.... ....+...........++..++..
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG------------- 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence 999999888888777888999999999999999986531 111222222223344444433211
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
...+.++........+.....++++++++|||||||.||||.+||+++...+......+ +++.+|++++.+|++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h 234 (536)
T PRK10946 160 EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAAH 234 (536)
T ss_pred CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCccc
Confidence 22344444333222223344678999999999999999999999999999988866655 7888999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.++..
T Consensus 235 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~--------------------- 293 (536)
T PRK10946 235 NYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEG--------------------- 293 (536)
T ss_pred cccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhccc---------------------
Confidence 998864 6778999999999876 9999999999999999999999999987632110
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....+ +++|.+++||+++++++.+++.+.+|+++++.||+||
T Consensus 294 --------------~~~~~~--------~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE 336 (536)
T PRK10946 294 --------------GSRAQL--------ASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAE 336 (536)
T ss_pred --------------Cccccc--------cceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccc
Confidence 000011 3899999999999999999999989999999999998
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=298.30 Aligned_cols=306 Identities=21% Similarity=0.260 Sum_probs=245.3
Q ss_pred CCHHHHHHHH-HHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDS-AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~-a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+...++|+++ ++.+||++|+++. + ..+||.|+.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 4 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a 74 (508)
T TIGR02262 4 NAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74 (508)
T ss_pred hHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4456677776 6779999999864 2 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++......+.+... ..+....++..+.... ....+
T Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~ 142 (508)
T TIGR02262 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEVQL 142 (508)
T ss_pred HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------ccccH
Confidence 99999999999999999999999999999999999876665544322 2234445555443211 12234
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
.++..............++++++++|||||||.||+|.++|+++...+.. ....+ +++.+|++++.+|++|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 217 (508)
T TIGR02262 143 AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAYG 217 (508)
T ss_pred HHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHHH
Confidence 44443332222233445789999999999999999999999999877655 33333 6788899999999999999
Q ss_pred HHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 281 QII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 281 ~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+.. ++.++..|+++++.+. ++..+++.|+++++|.+.++|.++..+++.
T Consensus 218 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~---------------------------- 269 (508)
T TIGR02262 218 LGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLAD---------------------------- 269 (508)
T ss_pred HHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcC----------------------------
Confidence 975 6678999999999865 899999999999999999999988876531
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.......+ +++|.+++||+++++++.+.|++.+|+++++.||+||
T Consensus 270 ---------~~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 314 (508)
T TIGR02262 270 ---------PNLPAEDQ--------VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTE 314 (508)
T ss_pred ---------cccccccc--------ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccc
Confidence 00000001 3899999999999999999999999999999999998
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=306.57 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=237.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|+.+++.+|+++|+++....+...+..+.+||.||.++++++|++|++. +++||+|+++++|++++++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 3457899999999999999999986410001123346899999999999999999987 899999999999999999999
Q ss_pred HHHHHcCCeEEee-ccCCC--hhHHHHHHhhcCceEEEEeCCChhhHhhcCccCC-CCccEEEEecCCChhhHHHHHHhC
Q 014742 120 EACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 120 lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+||+++|++++|+ ++..+ .+++.++++.++++++|++......+........ .....++.++....
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc----------
Confidence 9999999999999 55554 6789999999999999998876544432211110 11223333322100
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh
Q 014742 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (419)
............++++++|+|||||||.||||++||+++...+......+ ++..+|++++.+|+
T Consensus 167 -----------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl 230 (631)
T PRK07769 167 -----------EVGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSWLPF 230 (631)
T ss_pred -----------ccccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEeCCC
Confidence 00001111234578999999999999999999999999998887766655 77789999999999
Q ss_pred HHHHHHHHHHHHHhcCceEEEeC---C--CHHHHHHHhhhhcC---eEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 276 AHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQELKP---TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 276 ~h~~g~~~~l~~l~~G~~ivl~~---~--~~~~~~~~i~~~~~---t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
+|.+|+..++.+++.|+++++.+ . ++..+++.+.++++ +.+.++|.++..+..... ..
T Consensus 231 ~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~------------ 296 (631)
T PRK07769 231 FHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LP------------ 296 (631)
T ss_pred cCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cc------------
Confidence 99999988777788899998874 2 88899999999886 789999998877643100 00
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh---CC---ceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~tE 419 (419)
.......+++ ++|.+++||+++++++.++|.+.| |+ .+++.||+||
T Consensus 297 ------------------~~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE 348 (631)
T PRK07769 297 ------------------KDGEPPLDLS--------NVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAE 348 (631)
T ss_pred ------------------hhcccCcchh--------heeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence 0000012343 899999999999999999999987 33 5999999998
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=302.81 Aligned_cols=318 Identities=21% Similarity=0.293 Sum_probs=240.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
.++.+.+...+..+|+++|+.+. + ..+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 36889999999999999999863 2 47999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccC------CCCccEEEEecCCChhhHHHHHHhCc
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC------CLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
+++|++++|+++.++.+++.++++.++++++|+++...+...+..... ....+.++++.+..............
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999987655443322110 01123344443211000000000011
Q ss_pred eeeeHHHHHhcCCCCCC-CCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh
Q 014742 197 SCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (419)
+...|++++........ ......++.++++|||||||.||||++||+++...+......+ ++..++++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~ 245 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM 245 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence 23456666554321111 1122334677899999999999999999999877665544433 67788999999999
Q ss_pred HHHHHHHHHH-HHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 276 AHIYDQIIET-HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 276 ~h~~g~~~~l-~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
+|.+++...+ ..+..|.++++...++..+++.++++++|++.++|.++..|.+....
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~---------------------- 303 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKS---------------------- 303 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhh----------------------
Confidence 9999987644 45666766666555999999999999999999999999988652110
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....+ +++|.++++|+++++.+.++|.+. +.++++.||+||
T Consensus 304 --------------~~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE 345 (567)
T PLN02479 304 --------------ETILPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSE 345 (567)
T ss_pred --------------cccccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceeccccccc
Confidence 000011 388999999999999999999885 899999999998
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.58 Aligned_cols=316 Identities=18% Similarity=0.241 Sum_probs=250.3
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHH
Q 014742 37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (419)
Q Consensus 37 ~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~ 116 (419)
..+....++.+.+.+.++++||++|+.+. ++ +.+||.|+.++++++|+.|++ ++++||+|+++++|+++++
T Consensus 609 ~~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~ 679 (1146)
T PRK08633 609 SRKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGA 679 (1146)
T ss_pred hhcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHH
Confidence 34456788999999999999999999853 23 479999999999999999987 4799999999999999999
Q ss_pred HHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCc-cCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-RCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 117 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
++++||+++|++++|+++..+.+++.++++.++++++++++...+.+.+... ........++..++......
T Consensus 680 ~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 752 (1146)
T PRK08633 680 LANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS------- 752 (1146)
T ss_pred HHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc-------
Confidence 9999999999999999999999999999999999999998765554432110 01122234444433211000
Q ss_pred ceeeeHHHHHhcCC-C-----CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEE
Q 014742 196 VSCFSWEEFLQLGT-L-----DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (419)
Q Consensus 196 ~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (419)
....+.+...... + ........++++++++|||||||.||||.+||+++..++......+ +..++|++
T Consensus 753 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~ 826 (1146)
T PRK08633 753 -KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVI 826 (1146)
T ss_pred -hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 0011221111110 0 0001344678999999999999999999999999999888866665 77889999
Q ss_pred EEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHH
Q 014742 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE 346 (419)
Q Consensus 270 l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (419)
++.+|++|.+++.. ++.++..|+++++.+. +++.+++.++++++|++.++|.+++.+.+.
T Consensus 827 l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------- 889 (1146)
T PRK08633 827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRN----------------- 889 (1146)
T ss_pred EEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhc-----------------
Confidence 99999999999987 7888999999998764 899999999999999999999999987651
Q ss_pred HHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+..+..++ +++|.+++||+++++++.+++++.+|.++++.||+||
T Consensus 890 --------------------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE 934 (1146)
T PRK08633 890 --------------------KKLHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATE 934 (1146)
T ss_pred --------------------cccCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeeccccccc
Confidence 11122223 3899999999999999999999999999999999998
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=296.09 Aligned_cols=316 Identities=22% Similarity=0.271 Sum_probs=246.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
.|+.++|.+.++++||++|+.+. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~ 73 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA 73 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 37899999999999999999874 3 57999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (419)
+++|++++|+++.++.+++.++++.+++++++++......+.+... .....+.++.+++..... ......+++
T Consensus 74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 146 (533)
T PRK07798 74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGND------LLPGAVDYE 146 (533)
T ss_pred HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCcccc------cCCccccHH
Confidence 9999999999999999999999999999999999877666655432 224455566665432110 001234566
Q ss_pred HHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhh----cCccC------CCCcEEEEe
Q 014742 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV----TGKVC------SEEDTYFSF 272 (419)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~ 272 (419)
++............ ..++.++++|||||||.||+|+++|+++...+......+.. ....+ ..+++++..
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 147 DALAAGSPERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHHhccCCcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 66554321111112 23345789999999999999999999998655443221100 00111 466899999
Q ss_pred cChHHHHHHHHHHHHHhcCceEEEeC--C-CHHHHHHHhhhhcCeEEEecchHHHH-HHHHHHHHhhccCchHHHHHHHH
Q 014742 273 LPLAHIYDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDR-IYTGISNKISSGGALSKKLFEFA 348 (419)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~ivl~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
+|++|.+++..++.++..|+++++.+ . ++..+++.++++++|.+.++|..+.. +.+.+. .
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~--------------- 289 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A--------------- 289 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence 99999999988889999999999998 4 99999999999999999999987654 322111 0
Q ss_pred HHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
....++ .++|.+++||+++++++.+++++.+ +.++++.||+||
T Consensus 290 --------------------~~~~~~--------~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE 333 (533)
T PRK07798 290 --------------------RGPYDL--------SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSE 333 (533)
T ss_pred --------------------cccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccc
Confidence 000011 3899999999999999999999988 889999999998
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.03 Aligned_cols=294 Identities=19% Similarity=0.270 Sum_probs=243.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..++.++|...++.+||++|+.+. + ..+||.||.++++++|+.|.+.|+++|++|+++++++++++++++
T Consensus 456 ~~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~l 526 (1296)
T PRK10252 456 PETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALH 526 (1296)
T ss_pred CcCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999864 3 479999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|++++.+.+++.++++.+++++++++......+... ..+ .++..+.
T Consensus 527 a~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~~------------------ 582 (1296)
T PRK10252 527 AIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYNA------------------ 582 (1296)
T ss_pred HHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeeccc------------------
Confidence 9999999999999999999999999999999999998765433211 000 1111110
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
..... ...+.....++++++++|||||||.||||+++|+++.+.+......+ +++++|++++..|++|..+
T Consensus 583 ---~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 653 (1296)
T PRK10252 583 ---PLAPQ-GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS 653 (1296)
T ss_pred ---ccccc-cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence 00000 01111223578999999999999999999999999999998877766 8889999999999999998
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.+|..|+++++.+. ++..+++.|+++++|++.++|+++..+++.....
T Consensus 654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~----------------------- 710 (1296)
T PRK10252 654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPE----------------------- 710 (1296)
T ss_pred HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccc-----------------------
Confidence 8878999999999999763 8999999999999999999999999886521100
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. . ...+ .++|.+++||+++++++.+.|++.+|.++++.||+||
T Consensus 711 ----------~-~-~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE 753 (1296)
T PRK10252 711 ----------G-A-RQSC--------ASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTE 753 (1296)
T ss_pred ----------c-c-cccC--------CCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcch
Confidence 0 0 0001 3899999999999999999999988999999999998
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=303.88 Aligned_cols=307 Identities=16% Similarity=0.183 Sum_probs=233.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCC---CCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~ 117 (419)
+..|+.+++.++++.+|+++|+++. +. ..+.++.+||.||.++++++|++|.+. +++||+|+++++|++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~ 107 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA 107 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence 3578999999999999999999875 31 123446899999999999999999986 8999999999999999999
Q ss_pred HHHHHHHcCCeEEee-ccCCC--hhHHHHHHhhcCceEEEEeCCChhhHhhcCccCC-CCccEEEEecCCChhhHHHHHH
Q 014742 118 AMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+++||+++|++++|+ ++.++ .+++.++++.++++++|++......+........ .....++.+++...
T Consensus 108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 179 (612)
T PRK12476 108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD-------- 179 (612)
T ss_pred HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc--------
Confidence 999999999999999 57776 7899999999999999998766554433221110 01223444332110
Q ss_pred hCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCcc-CCCCcEEEEe
Q 014742 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 272 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~ 272 (419)
............++++++|+|||||||.||||+++|+++..++......+ . +.+++++++.
T Consensus 180 -------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~ 241 (612)
T PRK12476 180 -------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSW 241 (612)
T ss_pred -------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEe
Confidence 00011111234568999999999999999999999999988776655444 5 6678999999
Q ss_pred cChHHHHHHHHHHHHHhcCceEEEeCC-----CHHHHHHHhh--hhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHH
Q 014742 273 LPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345 (419)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~ivl~~~-----~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (419)
+|++|.+|+..++.+++.|+++++... ++..+++.++ +++++.+.++|.++..++.....
T Consensus 242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~------------- 308 (612)
T PRK12476 242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGL------------- 308 (612)
T ss_pred CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcC-------------
Confidence 999999999876666556666665532 7889999994 58999999999998887542000
Q ss_pred HHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh---CC---ceeeeccCCC
Q 014742 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGMVE 419 (419)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~tE 419 (419)
....+.++++ ++| +++||+++++++.++|++.| |+ .+++.||+||
T Consensus 309 --------------------~~~~~~~~l~--------~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE 359 (612)
T PRK12476 309 --------------------PAEGDDIDLS--------NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAE 359 (612)
T ss_pred --------------------hhhhcCcchh--------Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhh
Confidence 0001112333 889 99999999999999999987 54 4999999998
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=296.64 Aligned_cols=324 Identities=20% Similarity=0.274 Sum_probs=244.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
.+..++.++|...++.+|+++|+++. + ..+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus 20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~ 90 (557)
T PRK07059 20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI 90 (557)
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45678999999999999999999875 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhh-HH---------
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-KK--------- 189 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------- 189 (419)
+||+++|++++|+++..+.+++.++++.++++++|+++.....+...... ...+.++......... ..
T Consensus 91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (557)
T PRK07059 91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR 168 (557)
T ss_pred HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence 99999999999999999999999999999999999987665444332211 1222332221110000 00
Q ss_pred ----HHHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCc-c-
Q 014742 190 ----EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK-V- 262 (419)
Q Consensus 190 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~-~- 262 (419)
...........+++..... ..........++++++|+|||||||.||+|+++|.+++.++......+..... .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 248 (557)
T PRK07059 169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP 248 (557)
T ss_pred ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence 0000001123455544433 12222334567899999999999999999999999998766543332211000 1
Q ss_pred CCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCc
Q 014742 263 CSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339 (419)
Q Consensus 263 ~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (419)
....+.+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.++++++|.+.++|.++..+.+.
T Consensus 249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~---------- 318 (557)
T PRK07059 249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNN---------- 318 (557)
T ss_pred CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcC----------
Confidence 112457788999999999865 6678888998877754 899999999999999999999999988651
Q ss_pred hHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+.....+++ ++|.++.||+++++.+.++|.+.+|+++++.||+||
T Consensus 319 ---------------------------~~~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 363 (557)
T PRK07059 319 ---------------------------PDFDKLDFS--------KLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE 363 (557)
T ss_pred ---------------------------cCcCcCCch--------hheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence 111112233 889999999999999999999989999999999998
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=298.64 Aligned_cols=294 Identities=16% Similarity=0.168 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.|+.++|..++ .|+++|+++. + ..+||.||.++++++|..|.+.|+ ++|++|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 56888888764 7999999864 3 479999999999999999999999 7999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++++....+.+.. .+.. .++.+++. .+
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGV-RVLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCc-eEEEccch----------------hh
Confidence 9999999999999999999999999999999999887665443321 1122 23333221 12
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
.++........+.....++++++++|||||||.||||.++|.++...+......+ ++..+|++++.+|++|.+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 206 (540)
T PRK13388 132 AELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNAV 206 (540)
T ss_pred hhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcch
Confidence 2332211111122234678999999999999999999999999998887766666 78889999999999999998
Q ss_pred HH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 282 ~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
.. ++.++..|+++++.+. ++..+++.|+++++|++..+|..+..++..
T Consensus 207 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~------------------------------ 256 (540)
T PRK13388 207 MAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILAT------------------------------ 256 (540)
T ss_pred HHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhC------------------------------
Confidence 76 4567999999998876 899999999999999999999999887541
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+... .... .+++.+ . |+++++...+.|.+.++.++++.||+||
T Consensus 257 ----~~~~---~~~~--------~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE 299 (540)
T PRK13388 257 ----PERP---DDAD--------NPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSE 299 (540)
T ss_pred ----CCCc---cccc--------cceEEE-E-CCCCCHHHHHHHHHHhCCceeccccccc
Confidence 0000 0000 256643 3 6677888889999988999999999998
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=298.85 Aligned_cols=322 Identities=20% Similarity=0.293 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..++.+.|...++.+|+++|+.+. + +.+||.||.++++++|++|.+ .|+++||+|+++++|+++++++++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999853 3 479999999999999999998 499999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEec--CCChhhH----------
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA--NVSSSQK---------- 188 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------- 188 (419)
||+++|++++|+++..+.+++.++++.++++++++++...........+. ....++... +......
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--GIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--CceEEEeechhhccccccchhccccccc
Confidence 99999999999999999999999999999999999876544333222111 111111110 0000000
Q ss_pred --H-HHHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCc---
Q 014742 189 --K-EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK--- 261 (419)
Q Consensus 189 --~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~--- 261 (419)
. ..........+|+++.... ...........+++++|+|||||||.||||+++|+++...+......+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 0 0000001124566555433 11122234567899999999999999999999999998877665543311000
Q ss_pred -cCCC-CcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhc
Q 014742 262 -VCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336 (419)
Q Consensus 262 -~~~~-~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 336 (419)
.... ++++++.+|++|.+++.. ++..+..|++.++... ++..+++.++++++|.+.++|.++..+.+.
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~------- 324 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDH------- 324 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhC-------
Confidence 0122 357789999999999876 5666888888777643 899999999999999999999999988651
Q ss_pred cCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeecc
Q 014742 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG 416 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG 416 (419)
+.....++ .++|.+++||+++++.+.+.|++.+|+++++.||
T Consensus 325 ------------------------------~~~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG 366 (562)
T PRK12492 325 ------------------------------PGFKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG 366 (562)
T ss_pred ------------------------------cCcccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence 11111223 2899999999999999999999988999999999
Q ss_pred CCC
Q 014742 417 MVE 419 (419)
Q Consensus 417 ~tE 419 (419)
+||
T Consensus 367 ~tE 369 (562)
T PRK12492 367 LTE 369 (562)
T ss_pred ccc
Confidence 998
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=353.75 Aligned_cols=291 Identities=19% Similarity=0.224 Sum_probs=245.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|...++.+||++|+++. + +.+||.||.++++++|+.|++.|+++|++|+++++|++++++++||
T Consensus 3094 ~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~la 3164 (3956)
T PRK12467 3094 ERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLA 3164 (3956)
T ss_pred cccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999975 3 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++||++.++.+++.++++.++++++|++....+.+... .....+.++...
T Consensus 3165 vl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~----------------- 3221 (3956)
T PRK12467 3165 VLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD----------------- 3221 (3956)
T ss_pred HHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh-----------------
Confidence 999999999999999999999999999999999987654432111 011122222110
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
. .......+.....++++++++|||||||.||||+++|+++.+.+......+ +++++|+++++.|++|..++
T Consensus 3222 --~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 3293 (3956)
T PRK12467 3222 --L-NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGAQ 3293 (3956)
T ss_pred --h-cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHHH
Confidence 0 001112223345688999999999999999999999999999998877766 88899999999999999988
Q ss_pred HHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 282 IIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
..++.+|..|+++++.+. ++..+++.|+++++|++.++|++++.+++..
T Consensus 3294 ~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~---------------------------- 3345 (3956)
T PRK12467 3294 ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA---------------------------- 3345 (3956)
T ss_pred HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc----------------------------
Confidence 789999999999999874 8999999999999999999999999886410
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
+..++ ++||.+++||+++++++.++|++.+ ++.+++.||+||
T Consensus 3346 -----------~~~~~--------~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE 3388 (3956)
T PRK12467 3346 -----------GGADC--------ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTE 3388 (3956)
T ss_pred -----------cccCC--------CCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccch
Confidence 00011 3899999999999999999999877 678999999998
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=294.90 Aligned_cols=293 Identities=20% Similarity=0.234 Sum_probs=233.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.+.|...+..+||++|+.+. + ..+||.|+.++++++|++|++.|+++||+|+++++|+++++.+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4678999999999999999999864 2 379999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.++++++++++...+...... ..++.++....
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~--------------- 161 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA--------------- 161 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence 99999999999999999999999999999999999887654432211 11222221100
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHH--hhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE--VLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~--~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
...... ..+...++.++++|||||||.||+|.++|...... .......+ ++..+|++++.+|++|.
T Consensus 162 --~~~~~~-----~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h~ 229 (516)
T PRK13383 162 --GAEESG-----GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFHG 229 (516)
T ss_pred --hhhcCC-----CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcch
Confidence 000000 01112356689999999999999999999743211 11112222 67788999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+++..++.++..|+++++... +++.+++.++++++|.+.++|.++..+.+..+..
T Consensus 230 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 285 (516)
T PRK13383 230 LGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRV------------------------ 285 (516)
T ss_pred hhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccc------------------------
Confidence 999888888999999998776 9999999999999999999999999886521100
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. +...+ .++|.+++||+++++++.++|.+.+|.++++.||+||
T Consensus 286 --------~---~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE 328 (516)
T PRK13383 286 --------R---ARNPL--------PQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTE 328 (516)
T ss_pred --------c---ccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccc
Confidence 0 00011 3899999999999999999999999999999999998
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=330.38 Aligned_cols=315 Identities=15% Similarity=0.083 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCC---CCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~---~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
..++.++|...++.+||++|+++. +.. ....+.+||.||.++++++|++|++.|+++|++|+++++|+++++++
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~ 311 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA 311 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence 468999999999999999999863 211 12236899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---hhHhhcCccCC---CCccEEEEecCCChhhHHHHH
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---PSILSCLPRCC---LYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 192 (419)
++||+++|++++|++|.++.+++.++++.+++++++++.... ..+........ ..++.+...++.....
T Consensus 312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 386 (1389)
T TIGR03443 312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG----- 386 (1389)
T ss_pred HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc-----
Confidence 999999999999999999999999999999999999876421 11111111000 1111121111100000
Q ss_pred HhCceeeeHHHHHhcC---CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEE
Q 014742 193 ELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (419)
........+..... ..........++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++
T Consensus 387 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 459 (1389)
T TIGR03443 387 --GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF 459 (1389)
T ss_pred --cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 00000000000000 001111234578999999999999999999999999999988876666 78889999
Q ss_pred EEecChHHHHHHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHH
Q 014742 270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345 (419)
Q Consensus 270 l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (419)
++..|++|..++..++.+|+.|+++++++. ++..+++.|+++++|++.++|.+++.|...
T Consensus 460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~---------------- 523 (1389)
T TIGR03443 460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQ---------------- 523 (1389)
T ss_pred EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc----------------
Confidence 999999999888888999999999999864 688999999999999999999999887531
Q ss_pred HHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
. ...+ ++||.+++||+++++...+++++.. ++++++.||+||
T Consensus 524 --------------------~----~~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 566 (1389)
T TIGR03443 524 --------------------A----TTPI--------PSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTE 566 (1389)
T ss_pred --------------------c----cccC--------CCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCc
Confidence 0 0012 3899999999999999999988876 789999999998
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=297.84 Aligned_cols=313 Identities=17% Similarity=0.201 Sum_probs=242.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.+.|...++.+|+++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+.++++++
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 77 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF 77 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence 44668999999999999999999853 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh-----hhHhhcCccCCCCccEEEEecCCChhhHHHHHHh
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (419)
+||+++|++++|+++..+.+++.++++.++++++|++.+.. ..+...........+.++.+++......
T Consensus 78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 151 (540)
T PRK06164 78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------ 151 (540)
T ss_pred HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------
Confidence 99999999999999999999999999999999999987642 1111111111233445555542111000
Q ss_pred CceeeeHHHHHhcC-CCCC---CCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEE
Q 014742 195 GVSCFSWEEFLQLG-TLDC---ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 195 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (419)
......+.+..... .... ......++++++++|||||||.||+|+++|.++...+......+ ++..+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l 226 (540)
T PRK06164 152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL 226 (540)
T ss_pred CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 00001111111111 0000 01223468899999999999999999999999999888877766 778899999
Q ss_pred EecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHH
Q 014742 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY 349 (419)
Q Consensus 271 ~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (419)
+.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+..
T Consensus 227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~------------------- 287 (540)
T PRK06164 227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA------------------- 287 (540)
T ss_pred EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-------------------
Confidence 99999999999888899999999999876 9999999999999999999999999987620
Q ss_pred HhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEcc-CCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA-APLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G-~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....++ .++|.+..+| .+...++.+++... |+++++.||+||
T Consensus 288 -------------------~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE 330 (540)
T PRK06164 288 -------------------GERADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSE 330 (540)
T ss_pred -------------------cccCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeecc
Confidence 011112 2778776665 55666777777765 899999999998
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=295.30 Aligned_cols=290 Identities=19% Similarity=0.264 Sum_probs=238.1
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHH
Q 014742 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (419)
Q Consensus 44 tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~ 123 (419)
++.+.|.+.++.+|+++|+... + ..+||.||.+++.++|+.|.+.|+++|++|+++++|+.+++++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 4778999999999999999764 3 479999999999999999999999999999999999999999999999
Q ss_pred HcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHH
Q 014742 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (419)
Q Consensus 124 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (419)
++|++++|+++.++.+++.++++..++++++++......... .. ++.++. .+.
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence 999999999999999999999999999999998765432211 11 122111 011
Q ss_pred HHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH
Q 014742 204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (419)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (419)
...............+++.++++|||||||.||+|.++|.++...+......+ ....++++++.+|++|.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~ 199 (502)
T TIGR01734 125 AETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVMD 199 (502)
T ss_pred hhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHHH
Confidence 11111111111234578899999999999999999999999998888766655 7788899999999999999888
Q ss_pred HHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 284 ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 284 ~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
++.++..|+++++.+. ++..+++.+.+++++.+.++|.++..++..
T Consensus 200 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~------------------------------ 249 (502)
T TIGR01734 200 LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD------------------------------ 249 (502)
T ss_pred HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhc------------------------------
Confidence 8899999999998864 789999999999999999999999876531
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.......+ ++++.++++|+++++++.+++.+.+ ++++++.||+||
T Consensus 250 -------~~~~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE 295 (502)
T TIGR01734 250 -------PNFNQENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE 295 (502)
T ss_pred -------cccccccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence 00111112 3899999999999999999999988 889999999998
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=293.03 Aligned_cols=321 Identities=21% Similarity=0.314 Sum_probs=243.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..++.+.|..+++.+|+++|+++. + +.+||.||.++++++|+.|. +.|+++|++|+++++|+++++++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999864 3 57999999999999999997 6899999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCCh---hhH--------H
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS---SQK--------K 189 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~ 189 (419)
||+++|++++|++|.++.+++.+++..++++++++++.....+....... ....++..+.... ... .
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence 99999999999999999999999999999999999987665443332221 1223333210000 000 0
Q ss_pred -H--HHHh-CceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC
Q 014742 190 -E--AEEL-GVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (419)
Q Consensus 190 -~--~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (419)
. .... ......+.+..... ....+.....++++++++|||||||.||+|.++|.++...+......+.... ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence 0 0000 00122344443332 1122233456789999999999999999999999999887776554431110 122
Q ss_pred C-CcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCch
Q 014742 265 E-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340 (419)
Q Consensus 265 ~-~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 340 (419)
. .+++++.+|++|.+++.. .+..+..|+++++... ++..+++.++++++|.+.++|.++..+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----------- 320 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNT----------- 320 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcC-----------
Confidence 2 467788999999999875 5667778888877654 899999999999999999999999888641
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+..+..+++ ++|.+++||+++++.+.+.|++.+|+++++.||+||
T Consensus 321 --------------------------~~~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 365 (560)
T PRK08751 321 --------------------------PGFDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTE 365 (560)
T ss_pred --------------------------cCcCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeecccc
Confidence 111222343 899999999999999999999988999999999998
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=296.22 Aligned_cols=319 Identities=24% Similarity=0.413 Sum_probs=238.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..+++.++|...+..+|+++|+++. + +.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999864 3 579999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCC---hhhH---------
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS---SSQK--------- 188 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------- 188 (419)
||+++|++++|+++..+.+++.++++.++++++++++............ .....++...... .+..
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK 170 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence 9999999999999999999999999999999999998655443222111 1122222211000 0000
Q ss_pred --HHH--HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccC-
Q 014742 189 --KEA--EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC- 263 (419)
Q Consensus 189 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~- 263 (419)
... .+.......|+.+...............+++++++|||||||.||+|.++|+++..++......+ ...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~~ 246 (563)
T PRK06710 171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNCK 246 (563)
T ss_pred cccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCCC
Confidence 000 00000011122221111111111112357899999999999999999999999976543322211 122
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchH
Q 014742 264 SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341 (419)
Q Consensus 264 ~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 341 (419)
..++++++++|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+++.
T Consensus 247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------ 314 (563)
T PRK06710 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNS------------ 314 (563)
T ss_pred CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcC------------
Confidence 34568899999999999876 5578999999999876 999999999999999999999999987641
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+......++ ++|.+++||+++++++.+++++.+|.++++.||+||
T Consensus 315 -------------------------~~~~~~~~~--------~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 359 (563)
T PRK06710 315 -------------------------PLLKEYDIS--------SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE 359 (563)
T ss_pred -------------------------CccccCChh--------hhhheeeCCCcCCHHHHHHHHHhhCCCEeccccccc
Confidence 111111222 789999999999999999999988999999999998
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=290.60 Aligned_cols=294 Identities=17% Similarity=0.225 Sum_probs=234.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..++.++|...+. ++++++.+. + +.+||.||.++++++|++|++. |++++++|+++++|+++++++++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~l 72 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLG 72 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578899988875 789998864 3 5799999999999999999997 89999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++..+.+++.++++.++++++|+++.....+.... ... .++..+. ..
T Consensus 73 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~ 131 (529)
T PRK07867 73 AAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PA 131 (529)
T ss_pred HHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------cc
Confidence 99999999999999999999999999999999999987665443321 111 1222221 11
Q ss_pred HHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
|.++.... ..........++++++++|||||||.||+|+++|+++..++..+...+ +++.+|++++.+|++|.+
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~ 206 (529)
T PRK07867 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSN 206 (529)
T ss_pred HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHH
Confidence 33333322 111222334678999999999999999999999999998888766666 788899999999999999
Q ss_pred HHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 280 g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
++.. ++.++..|+++++.+. ++..+++.++++++|++.++|..+..++...+
T Consensus 207 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~-------------------------- 260 (529)
T PRK07867 207 AVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE-------------------------- 260 (529)
T ss_pred HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--------------------------
Confidence 9876 6678999999999876 99999999999999999999999988754100
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..... . +++|. +.||+++++.+ .+|.+.+|.++++.||+||
T Consensus 261 -------~~~~~----~--------~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE 301 (529)
T PRK07867 261 -------RPDDA----D--------NPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTE 301 (529)
T ss_pred -------ccccc----c--------cceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccc
Confidence 00000 0 26784 45888887765 6677778999999999998
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.00 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=239.5
Q ss_pred CCCCHHHHHHHHHHhCC-CCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 41 GLESPWQFFCDSAKRIP-NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~p-d~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
...++.+.|.+.++++| ++.++.+. ++ +.+||.|+.++++++|+.|++ |+++||+|+++++|++++++++
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~ 699 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTF 699 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHH
Confidence 35678888888888886 55666542 22 479999999999999999976 9999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHh-hcCccCCCCccEEEEecCCChhhHHHHHHhCcee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
+||+++|++++|+|++.+.+++.++++.++++++|++++..+... ............++.+++...... ..
T Consensus 700 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~ 771 (1140)
T PRK06814 700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------LA 771 (1140)
T ss_pred HHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------hH
Confidence 999999999999999999999999999999999999875433210 000001112233444433211000 00
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
..+.+......+....+...++++++++|||||||.||||.++|+++...+......+ +.+++|++++.+|++|.
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~ 846 (1140)
T PRK06814 772 DKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFHS 846 (1140)
T ss_pred HHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHHH
Confidence 0111111111111111234678999999999999999999999999998888876666 78889999999999999
Q ss_pred HHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 279 YDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 279 ~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
+++.. ++.++..|+++++.+. +.+.+.+.++++++|++.++|++++.+.+.
T Consensus 847 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~-------------------------- 900 (1140)
T PRK06814 847 FGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY-------------------------- 900 (1140)
T ss_pred HHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhh--------------------------
Confidence 99965 7788999999999875 677889999999999999999999887541
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+..++ +++|.+++||+++++++.+.+++.+|.++++.||+||
T Consensus 901 -------------~~~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 943 (1140)
T PRK06814 901 -------------AHPYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTE 943 (1140)
T ss_pred -------------cccccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEecccccc
Confidence 001112 3899999999999999999999999999999999998
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=290.43 Aligned_cols=280 Identities=22% Similarity=0.302 Sum_probs=225.1
Q ss_pred HHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeE
Q 014742 50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129 (419)
Q Consensus 50 ~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 129 (419)
+.+++.+||++|+.+. ..+ ..+||.|+.+.++++|.+|++.|+.+||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3567789999999753 111 579999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcC-
Q 014742 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG- 208 (419)
Q Consensus 130 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (419)
+|+++.++.+++.++++.++++++|+++....... . ...++++....
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~ 122 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD 122 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence 99999999999999999999999999865432100 0 00111111111
Q ss_pred -CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HHH
Q 014742 209 -TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETH 286 (419)
Q Consensus 209 -~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~ 286 (419)
...........+++++++|||||||.||+|.++|+++...+....... ....+|++++.+|++|.+++.. ++.
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~ 197 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP 197 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence 011112233567899999999999999999999999988777665544 6778899999999999999987 667
Q ss_pred HHhcCceEEEeCC-CHHHHHHHhh--hhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCC
Q 014742 287 CIHKGCSIGFWRG-DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363 (419)
Q Consensus 287 ~l~~G~~ivl~~~-~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (419)
++..|+++++.+. ++..++..+. ++++|+++++|+++..+.+.
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~---------------------------------- 243 (488)
T PRK09088 198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ---------------------------------- 243 (488)
T ss_pred HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhC----------------------------------
Confidence 8999999998876 8888888885 58999999999999887541
Q ss_pred CchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+..+...+ +++|.+++||++++....+++.+. |+++++.||+||
T Consensus 244 ---~~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE 287 (488)
T PRK09088 244 ---PGFDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSE 287 (488)
T ss_pred ---cCcCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccc
Confidence 11111122 289999999999999998888875 999999999998
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=296.16 Aligned_cols=292 Identities=15% Similarity=0.161 Sum_probs=220.5
Q ss_pred HHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHH
Q 014742 45 PWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124 (419)
Q Consensus 45 l~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~ 124 (419)
+.+.|...++.+|+++++++. +.+.++++||.||.++++++|++|.+. ++||+|+++++|+++++++++||++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 889999999999999999864 333568899999999999999999987 7999999999999999999999999
Q ss_pred cCCeEEeecc-------CCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 125 QAITYVPLYD-------TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 125 ~G~~~vpl~~-------~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
+|+++++++. ....+++..+++.++++++|++......+..... . +.+.+
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~--------------- 133 (525)
T PRK05851 77 AGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD--------------- 133 (525)
T ss_pred cCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc---------------
Confidence 9998654321 1223455677899999999998765544322110 0 00100
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC-CCcEEEEecChH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS-EEDTYFSFLPLA 276 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~pl~ 276 (419)
+....... .........++++++|+|||||||.||||+++|+++...+......+ +.. .+|++++++|++
T Consensus 134 ---~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~pl~ 204 (525)
T PRK05851 134 ---LATAAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWLPLY 204 (525)
T ss_pred ---cccccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcCCCc
Confidence 00000000 00111223578999999999999999999999999999888877666 777 889999999999
Q ss_pred HHHHHHHHHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 277 HIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 277 h~~g~~~~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
|.+++..++.+++.|+++++.+. ++..+++.+.++++|++...|.++..+.+. ..
T Consensus 205 h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~------------------- 264 (525)
T PRK05851 205 HDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKY-AR------------------- 264 (525)
T ss_pred cCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hc-------------------
Confidence 99999888889999999999762 678899999999999875544444443221 00
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh---hCC---ceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~tE 419 (419)
..+..+++ +||.+++||+++++++.++|.+. +|+ .+++.||+||
T Consensus 265 ----------------~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE 314 (525)
T PRK05851 265 ----------------RVSDVDLG--------ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAE 314 (525)
T ss_pred ----------------cccCCCHH--------HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence 00111232 89999999999999999998875 455 4999999998
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=291.97 Aligned_cols=324 Identities=20% Similarity=0.281 Sum_probs=245.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH
Q 014742 36 LESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (419)
Q Consensus 36 ~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~ 115 (419)
+..+.+..++.+.|..+++.+|+++|+.+. + +.+||.||.+++.++|+.|.+.|+++|++|+++++|++++
T Consensus 26 ~~~~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~ 96 (567)
T PRK06178 26 PEYPHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQF 96 (567)
T ss_pred CCCCcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHH
Confidence 334456788999999999999999999875 3 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCCh-hhHHHHH--
Q 014742 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS-SQKKEAE-- 192 (419)
Q Consensus 116 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 192 (419)
+++++||+++|++++|+++..+.+++.++++.++++++++++...+.+.+..... ..+.++....... +......
T Consensus 97 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 174 (567)
T PRK06178 97 HIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLP 174 (567)
T ss_pred HHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccc
Confidence 9999999999999999999999999999999999999999988777665443222 2334433321110 0000000
Q ss_pred -H---hCceeeeHHHHHhcC---CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCC
Q 014742 193 -E---LGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 265 (419)
Q Consensus 193 -~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 265 (419)
. .......+.++.... ..........++++++++|||||||.||+|++||.+++..+....... .....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~ 250 (567)
T PRK06178 175 DSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGE 250 (567)
T ss_pred cccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCC
Confidence 0 000001111221111 111122345678999999999999999999999999987665533321 25678
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHH
Q 014742 266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343 (419)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (419)
.|++++.+|++|.+|+.. ++.++..|+++++.+. ++..++..++++++|.+.++|..+..+...
T Consensus 251 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~-------------- 316 (567)
T PRK06178 251 DSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDH-------------- 316 (567)
T ss_pred CcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC--------------
Confidence 899999999999999875 7788999999999987 999999999999999999999999887541
Q ss_pred HHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEE--EccCCCCHHHHHHHHHhhCCceee-eccCCC
Q 014742 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML--SGAAPLPIHVEEFLRVTSGAPLTQ-GYGMVE 419 (419)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~--~~G~~l~~~~~~~~~~~~~~~v~~-~YG~tE 419 (419)
+.....+++ +++.+. +.|+++++++.+.|++.+|..++. .||+||
T Consensus 317 -----------------------~~~~~~~l~--------~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE 364 (567)
T PRK06178 317 -----------------------PRFAEYDLS--------SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTE 364 (567)
T ss_pred -----------------------CCCCCCCcc--------hheeeeeccccccCCHHHHHHHHHHhCCccccccccccc
Confidence 001111122 555543 446899999999999999887765 799998
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=288.76 Aligned_cols=288 Identities=19% Similarity=0.213 Sum_probs=238.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
+++.+.|.+++..+|+++++... + +.+||.||.+.++++|..|.+.|+++|++|+++++|+.+++++++||
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~ 72 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA 72 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 56889999999999999998864 2 47999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (419)
+++|++++|+++.++.+++..+++.+++++++++....... .... ...++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------------------~~~~~ 122 (503)
T PRK04813 73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGIP----------------------VITLD 122 (503)
T ss_pred HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCCc----------------------EEehH
Confidence 99999999999999999999999999999999987641100 0110 11111
Q ss_pred HHHhc---CCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 203 EFLQL---GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 203 ~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
++... ...........++++++++|||||||.||+|.++|+++...+......+ .+..+++++..+|++|..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~ 197 (503)
T PRK04813 123 ELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDL 197 (503)
T ss_pred HhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhH
Confidence 11111 1111112334678899999999999999999999999998888766655 778899999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
++..++.++..|+++++.+. ++..+++.++++++|++..+|.+++.+....
T Consensus 198 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~------------------------- 252 (503)
T PRK04813 198 SVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDP------------------------- 252 (503)
T ss_pred hHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhh-------------------------
Confidence 98778889999999999875 7899999999999999999999998764310
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.....++ +++|.++++|+++++.+.+++.+.+ +.++++.||+||
T Consensus 253 ------------~~~~~~~--------~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE 297 (503)
T PRK04813 253 ------------SFNEEHL--------PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTE 297 (503)
T ss_pred ------------ccCcccC--------CCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccch
Confidence 0111112 3899999999999999999999998 789999999998
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=296.17 Aligned_cols=311 Identities=18% Similarity=0.211 Sum_probs=238.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc
Q 014742 33 DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (419)
Q Consensus 33 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~ 112 (419)
.++|..-.++.++.++|...++.+|+..++ + .+....+.+||.||..++.++|.+|++.|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~ 84 (579)
T PRK09192 11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD 84 (579)
T ss_pred ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 345555577899999999999998866554 2 2223347899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCeEEeeccCCC-------hhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCCh
Q 014742 113 PEWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (419)
Q Consensus 113 ~~~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (419)
++++++++||+++|++++|+++..+ .+++.++++.++++++|+++.....+.+.... ...+.
T Consensus 85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~------- 153 (579)
T PRK09192 85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH------- 153 (579)
T ss_pred hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc-------
Confidence 9999999999999999999987543 58899999999999999998765554432211 01111
Q ss_pred hhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhh-hhhhcCccCC
Q 014742 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCS 264 (419)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~-~~~~~~~~~~ 264 (419)
..++.++..............++++++++|||||||.||||.++|++++..+..... .+ ++.
T Consensus 154 ------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~ 216 (579)
T PRK09192 154 ------------VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVR 216 (579)
T ss_pred ------------eeehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCC
Confidence 122333322221122223456789999999999999999999999999988877655 44 788
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccC
Q 014742 265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338 (419)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 338 (419)
++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.+.++++++++..|..+..+.....
T Consensus 217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~------- 289 (579)
T PRK09192 217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVN------- 289 (579)
T ss_pred CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhc-------
Confidence 8999999999999999986 6678999999987752 68899999999999987765555544432100
Q ss_pred chHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC------Ccee
Q 014742 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLT 412 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~------~~v~ 412 (419)
.......+++ ++|.+++||+++++.+.+.+.+.++ ..++
T Consensus 290 ---------------------------~~~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~ 334 (579)
T PRK09192 290 ---------------------------SKDLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM 334 (579)
T ss_pred ---------------------------cccccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence 0001122343 8999999999999999999998773 2499
Q ss_pred eeccCCC
Q 014742 413 QGYGMVE 419 (419)
Q Consensus 413 ~~YG~tE 419 (419)
+.||+||
T Consensus 335 ~~yG~TE 341 (579)
T PRK09192 335 PSYGLAE 341 (579)
T ss_pred ccccccc
Confidence 9999998
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=289.13 Aligned_cols=313 Identities=21% Similarity=0.252 Sum_probs=236.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+++.++|.+.++.+|+++|+.+. + ..+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA 87 (545)
T PRK08162 17 PLTPLSFLERAAEVYPDRPAVIHG----D-----RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFG 87 (545)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEEC----C-----eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence 468889999999999999999864 2 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++..+++.+++++++++.+....+.+..... +.. ..+.++...... ......+..++
T Consensus 88 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~ 162 (545)
T PRK08162 88 VPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDY 162 (545)
T ss_pred HHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccH
Confidence 9999999999999999999999999999999999988766554332211 111 122222111000 00001123356
Q ss_pred HHHHhcCCCCCCC-CCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLGTLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+++.......... .....+++++++|||||||.||||+++|+++...+......+ .+..++++++.+|++|.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~ 237 (545)
T PRK08162 163 EAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNG 237 (545)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhh
Confidence 6665443221111 122345789999999999999999999999877665543333 6777889999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
+...+...+.|++.++... ++..+++.++++++|++.++|.+++.|++...
T Consensus 238 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~---------------------------- 289 (545)
T PRK08162 238 WCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPA---------------------------- 289 (545)
T ss_pred HHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcc----------------------------
Confidence 8764444445555555555 99999999999999999999999999865200
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. ....+ .+.+.++++|+++++++.+.+++ +++++++.||+||
T Consensus 290 ------~---~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE 331 (545)
T PRK08162 290 ------E---WRAGI--------DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTE 331 (545)
T ss_pred ------c---cccCC--------ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccc
Confidence 0 00001 14455678999999999999987 4999999999998
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=343.58 Aligned_cols=294 Identities=18% Similarity=0.257 Sum_probs=244.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|...++.+||++|+++. + +.+||+||.++++++|+.|++.|+++|++|+++++++++++++++
T Consensus 510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4568999999999999999999975 3 479999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.+++++++++........ ..... .++.++...
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~-----~~~~~-~~~~~~~~~---------------- 638 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP-----VPAGL-RSLCLDEPA---------------- 638 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc-----cccCc-cEEEecccc----------------
Confidence 99999999999999999999999999999999999985432210 00111 122222111
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+.........+.....++++++++|||||||.||||+++|+++.+.+......+ ++.++|+++...|++|..+
T Consensus 639 --~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 711 (3956)
T PRK12467 639 --DLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-----QLAADDSMLMVSTFAFDLG 711 (3956)
T ss_pred --ccccccCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-----CCCCCCEEEEecCccHhHH
Confidence 000111111222345678999999999999999999999999999998877766 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.+|..|+++++.+. ++..+++.|+++++|++.++|++++.+++...
T Consensus 712 ~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 766 (3956)
T PRK12467 712 VTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR------------------------- 766 (3956)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc-------------------------
Confidence 8889999999999999863 89999999999999999999999999865210
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.. .+ .++|.+++||+++++++.+.|.+.+ ++++++.||+||
T Consensus 767 ------------~~--~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 808 (3956)
T PRK12467 767 ------------VA--LP--------RPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTE 808 (3956)
T ss_pred ------------cc--cC--------CcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCCh
Confidence 00 01 2789999999999999999999976 789999999998
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=349.19 Aligned_cols=293 Identities=19% Similarity=0.220 Sum_probs=244.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+.+. + ..+||.||.++++++|+.|++.|+++|++|+++++|+++++++++|
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la 580 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA 580 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 568999999999999999999874 3 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.+++++++++......... . .. ..++.++...
T Consensus 581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~-~----~~-~~~~~~~~~~----------------- 637 (5163)
T PRK12316 581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL-A----AG-VQVLDLDRPA----------------- 637 (5163)
T ss_pred HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc-c----cC-ceEEEecCcc-----------------
Confidence 99999999999999999999999999999999998765432210 0 01 1223332211
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
.+........+.....++++++|+|||||||.||||+++|+++.+.+......+ +++.+|++++.+|++|..++
T Consensus 638 -~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~~ 711 (5163)
T PRK12316 638 -AWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVSV 711 (5163)
T ss_pred -hhhccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHHH
Confidence 001111112222344678999999999999999999999999999998877766 88899999999999999998
Q ss_pred HHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
..++.+|..|+++++.+. ++..+++.|+++++|++.++|++++.|++.
T Consensus 712 ~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---------------------------- 763 (5163)
T PRK12316 712 WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQD---------------------------- 763 (5163)
T ss_pred HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhc----------------------------
Confidence 889999999999999842 899999999999999999999999998641
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.... .+ +++|.+++||+++++++.+.|.+.+ +.++++.||+||
T Consensus 764 ---------~~~~--~~--------~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 807 (5163)
T PRK12316 764 ---------EDVA--SC--------TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTE 807 (5163)
T ss_pred ---------cccc--cC--------CCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcCh
Confidence 0000 12 3899999999999999999997766 789999999998
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=347.92 Aligned_cols=293 Identities=20% Similarity=0.247 Sum_probs=243.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|...++.+|+++|+++. + ..+||.||.++++++|+.|++.|+++|++|+++++|+++++++++|
T Consensus 2002 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lA 2072 (5163)
T PRK12316 2002 GPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072 (5163)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 458999999999999999999975 3 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++||++.++.+++.++++.+++++++++......+... .... .+.++..
T Consensus 2073 il~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~------------------ 2128 (5163)
T PRK12316 2073 VLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD------------------ 2128 (5163)
T ss_pred HHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch------------------
Confidence 999999999999999999999999999999999988655432110 1111 1111110
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
..+.. .....+.....++++++|+|||||||.||||+++|+++.+.+......+ +++++|+++.+.|++|..++
T Consensus 2129 ~~~~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 2202 (5163)
T PRK12316 2129 AEWAD-YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGAH 2202 (5163)
T ss_pred hhhhc-cCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHHH
Confidence 00000 0111223345689999999999999999999999999999998877766 88899999999999999888
Q ss_pred HHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 282 IIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
..++.+|..|+++++.+. ++..+++.|+++++|++.++|.+++.+.+....
T Consensus 2203 ~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------------------- 2256 (5163)
T PRK12316 2203 EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAER-------------------------- 2256 (5163)
T ss_pred HHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhc--------------------------
Confidence 779999999999987754 889999999999999999999999998652110
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
... . .+||.+++||+++++++.++|.+.+ +..+++.||+||
T Consensus 2257 -----------~~~-~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 2298 (5163)
T PRK12316 2257 -----------DGR-P--------PAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTE 2298 (5163)
T ss_pred -----------ccC-C--------cceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchh
Confidence 000 0 2799999999999999999999876 678999999998
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=345.26 Aligned_cols=295 Identities=18% Similarity=0.188 Sum_probs=245.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++++||++|+++. ++ .+||.||.++++++|+.|++.|+++|++|+++++++++++++++|
T Consensus 3719 ~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~la 3789 (4334)
T PRK05691 3719 EQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVG 3789 (4334)
T ss_pred ccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 568999999999999999999976 43 799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCC-CCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
++++|+++|||++.++.+++.++++.+++++++++............... ...+.++..++.
T Consensus 3790 vlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3852 (4334)
T PRK05691 3790 SFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV----------------- 3852 (4334)
T ss_pred HHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc-----------------
Confidence 99999999999999999999999999999999999875543322211110 011122222211
Q ss_pred HHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.... ....+.....+++.++++|||||||.||||+++|+++.+.+......+ +++++|+++...++++..
T Consensus 3853 ----~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd~ 3923 (4334)
T PRK05691 3853 ----QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFDI 3923 (4334)
T ss_pred ----ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchhH
Confidence 0001 111122334678999999999999999999999999999998877766 899999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhh
Q 014742 280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (419)
++..++.+|..|+++++.+. ++..+++.++++++|++..+|++++.+++..
T Consensus 3924 s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~------------------------- 3978 (4334)
T PRK05691 3924 SVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED------------------------- 3978 (4334)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc-------------------------
Confidence 98889999999999999864 7899999999999999999999998876410
Q ss_pred hccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
...+ .+||.+++||+++++++.++|.+.+ ++++++.||+||
T Consensus 3979 ---------------~~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 4020 (4334)
T PRK05691 3979 ---------------RQAL--------DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAE 4020 (4334)
T ss_pred ---------------cccC--------CCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCcc
Confidence 0001 3899999999999999999998876 789999999998
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=286.99 Aligned_cols=320 Identities=18% Similarity=0.263 Sum_probs=239.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..++.+.|..+++.+|+++|+++. + +.+||.||.++++++|.+|++ .|+++|++|+++++|+.+++++++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 467999999999999999999864 3 479999999999999999984 899999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChh--hHH-----HHH-
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS--QKK-----EAE- 192 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~- 192 (419)
||+++|++++|+++..+.+++.++++.+++++++++......+.+.... .....++........ ... ...
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999987654433332211 112222221110000 000 000
Q ss_pred -------HhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC
Q 014742 193 -------ELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (419)
Q Consensus 193 -------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (419)
.......++.+..... ..........++++++++|||||||.||+|.++|.++..++......+. .....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG--PLLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc--cccCC
Confidence 0000112222222222 1111222346789999999999999999999999999887654433220 01233
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchH
Q 014742 265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341 (419)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 341 (419)
.++.++..+|++|.+++.. .+.++..|+++++... ++..+++.++++++|.+.++|.+++.+.+.
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~------------ 316 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN------------ 316 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhC------------
Confidence 4678889999999999876 6677889999887653 889999999999999999999999998651
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.......+ +++|.+++||+++++.+.++|++.+|.++++.||+||
T Consensus 317 -------------------------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE 361 (560)
T PRK08974 317 -------------------------EEFQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTE 361 (560)
T ss_pred -------------------------cCcccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccc
Confidence 00111122 2899999999999999999999988999999999998
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=283.76 Aligned_cols=302 Identities=19% Similarity=0.243 Sum_probs=234.5
Q ss_pred HHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeE
Q 014742 50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129 (419)
Q Consensus 50 ~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 129 (419)
...++.+||++|+++. +++ +.+||.||.+++++++++|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4677889999999864 222 579999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCC
Q 014742 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 209 (419)
Q Consensus 130 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (419)
+|+++..+.+++.++++.+++++++++......+.+..... ......+....... ......+++......
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP 146 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcC-CCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence 99999999999999999999999999987766554433222 23333344432111 011233444332211
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCCCCeEEe--echhHHHHh---hhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHH
Q 014742 210 LDCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEV---LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284 (419)
Q Consensus 210 ~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~--sh~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 284 (419)
.......++.++++|||||||.||||++ +|.++.... ......+ .+..++++++.+|++|.+++...
T Consensus 147 ---~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~ 218 (511)
T PRK13391 147 ---ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRAV 218 (511)
T ss_pred ---CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHHH
Confidence 1111234567899999999999999995 466654332 2222333 66788999999999999998888
Q ss_pred HHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCC
Q 014742 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363 (419)
Q Consensus 285 l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (419)
+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+....
T Consensus 219 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------------------- 267 (511)
T PRK13391 219 MLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEE------------------------------- 267 (511)
T ss_pred HHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchh-------------------------------
Confidence 889999999999877 999999999999999999999999887642110
Q ss_pred CchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..+.+++ .++|.+++||+++++++.+++++.+|..+++.||+||
T Consensus 268 ----~~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE 311 (511)
T PRK13391 268 ----VRDKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATE 311 (511)
T ss_pred ----hcccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeecccc
Confidence 0011122 3899999999999999999999988999999999998
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=290.23 Aligned_cols=308 Identities=17% Similarity=0.238 Sum_probs=228.4
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeccCC---CCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 44 SPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 44 tl~~~l~~~a~~~pd~~ai~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
++.+.|.+++..+|+++|+.+. +. ..+..+.+||.||..+++++|++|++.| .+||+|+++++|+++++++++
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l 77 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL 77 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence 6889999999999999999864 21 1122468999999999999999999999 689999999999999999999
Q ss_pred HHHHcCCeEEeecc---CCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccC-CCCccEEEEecCCChhhHHHHHHhCc
Q 014742 121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 121 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
||+++|++++|+++ ..+.+++.++++.+++++|+++++....+.+..... ......++..+..
T Consensus 78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (578)
T PRK05850 78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL------------- 144 (578)
T ss_pred HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence 99999999999997 457889999999999999999987655443321100 0011122222110
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhh-hhhcCccCCCCcEEEEecCh
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVCSEEDTYFSFLPL 275 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl 275 (419)
++ ............++++++++|||||||.||||.++|++++.++...... +.........++++++.+|+
T Consensus 145 ------~~--~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 216 (578)
T PRK05850 145 ------DL--DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF 216 (578)
T ss_pred ------cc--ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence 00 0000011123456899999999999999999999999999877664432 21000113457899999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHH-HHHHHhhccCchHHHHHHHH
Q 014742 276 AHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT-GISNKISSGGALSKKLFEFA 348 (419)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 348 (419)
+|.+|+.. ++.+++.|+++++.+. ++..+++.+.++++++. .+|.++..+.. ...
T Consensus 217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~----------------- 278 (578)
T PRK05850 217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTS----------------- 278 (578)
T ss_pred CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcc-----------------
Confidence 99999876 7889999999999863 78999999999999855 66665443321 100
Q ss_pred HHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC------CceeeeccCCC
Q 014742 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGMVE 419 (419)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE 419 (419)
.......+++ ++|.+++||+++++++.++|.+.|+ ..+++.||+||
T Consensus 279 -----------------~~~~~~~~~~--------~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE 330 (578)
T PRK05850 279 -----------------DDDMAGLDLG--------GVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAE 330 (578)
T ss_pred -----------------hhhhcCcchh--------hheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhh
Confidence 0001111232 8999999999999999999988873 36999999998
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=341.85 Aligned_cols=292 Identities=19% Similarity=0.264 Sum_probs=243.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|.+.++.+||++|+.+. + ..+||.||.++++++|++|++.|+++|++|+++++++++++++++
T Consensus 1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3568999999999999999999875 3 379999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
|++++|++++|+++.++.+++.++++.++++++|++......+... ... ..+..+...
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH---------------- 1257 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc----------------
Confidence 9999999999999999999999999999999999997654432111 000 111111110
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
.. ......+.....++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++..|++|..+
T Consensus 1258 ~~----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691 1258 LD----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred cc----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 00 00011122234578999999999999999999999999999988876666 8889999999999999988
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.+|..|+++++.+. ++..+++.|+++++|++.++|++++.+.+.
T Consensus 1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~--------------------------- 1381 (4334)
T PRK05691 1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDE--------------------------- 1381 (4334)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhC---------------------------
Confidence 8888999999999999753 899999999999999999999999988641
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
+ ....+ ++||.+++||+++++++.++|.+.+ ++++++.||+||
T Consensus 1382 ----------~--~~~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 1425 (4334)
T PRK05691 1382 ----------P--LAAAC--------TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTE 1425 (4334)
T ss_pred ----------c--ccccC--------CcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcCh
Confidence 0 00012 3899999999999999999999987 789999999998
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=280.57 Aligned_cols=273 Identities=23% Similarity=0.244 Sum_probs=224.1
Q ss_pred CCHHHHH-HHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFF-CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l-~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+++.+.+ ..+++.+|+++|+.+. + +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la 72 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72 (458)
T ss_pred chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 3455554 5668899999999853 3 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++..+.+++..+++.+++++++++.+... +.. +.... +
T Consensus 73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~~----------------------~ 121 (458)
T PRK09029 73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSLH----------------------L 121 (458)
T ss_pred HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------ccccc----------------------c
Confidence 9999999999999999999999999999999999876432 100 00000 0
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
. ...........++++++++|||||||.||||.+||++++..+......+ +...+|++++.+|++|.+++
T Consensus 122 ~-----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~ 191 (458)
T PRK09029 122 Q-----LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQ 191 (458)
T ss_pred c-----cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhh
Confidence 0 0001112234578899999999999999999999999999888866655 77889999999999999998
Q ss_pred HHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCC
Q 014742 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (419)
..++.++..|+++++.+. ..+++.+ .++|.+..+|+++..++..
T Consensus 192 ~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~-------------------------------- 235 (458)
T PRK09029 192 GIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDN-------------------------------- 235 (458)
T ss_pred HHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhc--------------------------------
Confidence 877788999999998764 4566666 3799999999999887641
Q ss_pred CCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.. . . .++|.+++||+++++.+.+++... |.++++.||+||
T Consensus 236 ----~~-~----~--------~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE 275 (458)
T PRK09029 236 ----RS-E----P--------LSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTE 275 (458)
T ss_pred ----cc-c----C--------CcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccc
Confidence 00 0 0 279999999999999999999874 999999999998
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=280.87 Aligned_cols=295 Identities=18% Similarity=0.231 Sum_probs=222.5
Q ss_pred HHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEE
Q 014742 51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV 130 (419)
Q Consensus 51 ~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 130 (419)
.+++.+|+++|+.+. +++ +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 467789999999864 222 5799999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCC
Q 014742 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL 210 (419)
Q Consensus 131 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (419)
|+++.++.+++.++++.++++++++++......... .. .....+.+..... ....+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKV-GA---DLPLRLSFGGEID-----------GFGSFEAALAGAG- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHh-hh---ccceEEEecCccc-----------ccccHHHHhcccC-
Confidence 999999999999999999999999987543322111 11 1111122211100 1223333322111
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCCCCeEEe--echhHHHHhh----hhhhhhhhcCccCCCCcEEEEecChHHHHHHHHH
Q 014742 211 DCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEVL----SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284 (419)
Q Consensus 211 ~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~--sh~~l~~~~~----~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 284 (419)
+ .....++.++|+|||||||.||||++ +|.++..... .....+ .+..+|++++.+|++|.+++...
T Consensus 142 --~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~ 213 (501)
T PRK13390 142 --P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRWC 213 (501)
T ss_pred --C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHHH
Confidence 0 01122357999999999999999996 4555543221 111223 67788999999999999998765
Q ss_pred HHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCC
Q 014742 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363 (419)
Q Consensus 285 l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (419)
+..+..|+++++.+. ++..+++.|+++++|++.++|+++..+.+....
T Consensus 214 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------- 262 (501)
T PRK13390 214 SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDAD------------------------------- 262 (501)
T ss_pred HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccch-------------------------------
Confidence 556778999998876 999999999999999999999999988642100
Q ss_pred CchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....++ .++|.+++||+++++++.+.+++.+|.++++.||+||
T Consensus 263 ----~~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE 306 (501)
T PRK13390 263 ----VRTRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTE 306 (501)
T ss_pred ----hcccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccc
Confidence 0011112 2889999999999999999999988999999999998
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=277.12 Aligned_cols=267 Identities=22% Similarity=0.291 Sum_probs=219.3
Q ss_pred HHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEe
Q 014742 52 SAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131 (419)
Q Consensus 52 ~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vp 131 (419)
.++..++++|+.+. + +.+||.||.++++++|..|+ ++|+|+++++|+++++++++||+++|++++|
T Consensus 9 ~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~ 74 (471)
T PRK07787 9 VAAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVP 74 (471)
T ss_pred hhcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence 34456888888764 3 58999999999999999996 5799999999999999999999999999999
Q ss_pred eccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCCC
Q 014742 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD 211 (419)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (419)
+++..+.+++..+++.+++++++++.+... ..++....... ...+
T Consensus 75 l~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~---------- 119 (471)
T PRK07787 75 VPPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSW---------- 119 (471)
T ss_pred cCCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------cccc----------
Confidence 999999999999999999999999863110 01111100000 0001
Q ss_pred CCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhc
Q 014742 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHK 290 (419)
Q Consensus 212 ~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~ 290 (419)
.......++++++++|||||||.||+|.++|+++...+......+ ++..+|++++.+|++|.+|+.. ++.++..
T Consensus 120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 194 (471)
T PRK07787 120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI 194 (471)
T ss_pred ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence 011123568999999999999999999999999999888766655 7788899999999999999986 7889999
Q ss_pred CceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhH
Q 014742 291 GCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369 (419)
Q Consensus 291 G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (419)
|+++++.+. ++..+++.|+ +++|.+.++|.++..+.+.. ..
T Consensus 195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~----------------------------------~~--- 236 (471)
T PRK07787 195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADP----------------------------------EA--- 236 (471)
T ss_pred CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCc----------------------------------cc---
Confidence 999999876 9999999999 99999999999999886410 00
Q ss_pred HHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 370 ~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...+ .++|.+++||+++++.++++|++.++.++++.||+||
T Consensus 237 -~~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 277 (471)
T PRK07787 237 -ARAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTE 277 (471)
T ss_pred -cccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccc
Confidence 0012 3899999999999999999999989999999999998
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=270.67 Aligned_cols=239 Identities=17% Similarity=0.186 Sum_probs=208.6
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEE
Q 014742 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (419)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 155 (419)
+.+||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++.++++++++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 58999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCC
Q 014742 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP 235 (419)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~P 235 (419)
++.... ... .....++++++++|||||||.|
T Consensus 86 ~~~~~~------------------~~~-------------------------------~~~~~~~~~~~i~~TSGtTG~P 116 (414)
T PRK08308 86 GESDFT------------------KLE-------------------------------AVNYLAEEPSLLQYSSGTTGEP 116 (414)
T ss_pred cCcccc------------------ccc-------------------------------CCCCCCCCceEEEECCCCCCCC
Confidence 763110 000 0012467889999999999999
Q ss_pred CeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcC
Q 014742 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKP 313 (419)
Q Consensus 236 K~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~ 313 (419)
|+|++||+++..++..+...+ ....+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++
T Consensus 117 Kgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~ 191 (414)
T PRK08308 117 KLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQ 191 (414)
T ss_pred cEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCC
Confidence 999999999999888876666 7778899999999999999876 7889999999999877 99999999999999
Q ss_pred eEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccC
Q 014742 314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393 (419)
Q Consensus 314 t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~ 393 (419)
|+++++|.++..+.+.. + .+ .+++.++++|+
T Consensus 192 t~~~~~P~~~~~l~~~~------------------------------------~-~~------------~~l~~~~~~G~ 222 (414)
T PRK08308 192 HILYAVPLMLHILGRLL------------------------------------P-GT------------FQFHAVMTSGT 222 (414)
T ss_pred eEEEcCHHHHHHHHhcC------------------------------------C-cc------------ccccEEEEccC
Confidence 99999999999886410 0 00 26788999999
Q ss_pred CCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 394 PLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 394 ~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++++++.+++++. +.++++.||+||
T Consensus 223 ~l~~~~~~~~~~~-~~~~~~~YG~tE 247 (414)
T PRK08308 223 PLPEAWFYKLRER-TTYMMQQYGCSE 247 (414)
T ss_pred CCCHHHHHHHHHh-CChhhhccCccc
Confidence 9999999999986 678999999998
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=278.45 Aligned_cols=286 Identities=20% Similarity=0.254 Sum_probs=223.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEE
Q 014742 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (419)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 155 (419)
+.+||.||.+.+++++++|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCC
Q 014742 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP 235 (419)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~P 235 (419)
+......+.+........+..+++.+... .....|++...... .......++.++++|||||||.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~P 155 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP---DTPIADETAGADMLYSSGTTGRP 155 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC---CCCCCCCCcceEEEECCCCCCCC
Confidence 98776655443322211344555443211 11334554443221 11223456789999999999999
Q ss_pred CeEEeechhHHHHhh--hhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhc
Q 014742 236 KGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELK 312 (419)
Q Consensus 236 K~V~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~ 312 (419)
|+|.++|.++..... ...... ........++++++.+|++|.+++...+.++..|+++++.+. ++..+++.+++++
T Consensus 156 K~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 156 KGIKRPLPGLDPDEAPGMMLALL-GFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred ceEEEccCCcchhhhhHHhhhhh-hhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 999999887654332 111111 011123467899999999999998887789999999999876 9999999999999
Q ss_pred CeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEcc
Q 014742 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 392 (419)
Q Consensus 313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G 392 (419)
+|++.++|.++..+++... ...+.++++ ++|.+++||
T Consensus 235 ~t~~~~~P~~~~~l~~~~~-----------------------------------~~~~~~~~~--------~lr~i~~~g 271 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPE-----------------------------------EVRARYDVS--------SLRVAIHAA 271 (502)
T ss_pred CeEEEehHHHHHHHHhCcc-----------------------------------ccCCCCCcc--------cceEEEecC
Confidence 9999999999998865200 001112232 899999999
Q ss_pred CCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 393 APLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+++++++.+++.+.+|..+++.||+||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~yG~tE 298 (502)
T PRK08276 272 APCPVEVKRAMIDWWGPIIHEYYASSE 298 (502)
T ss_pred CCCCHHHHHHHHHHhCcHhhhhccccc
Confidence 999999999999988999999999998
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=294.56 Aligned_cols=306 Identities=14% Similarity=0.149 Sum_probs=226.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|...++.+||++|+++. + +.+||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34568999999999999999999864 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++. .++.++++.+++++||++......+... ...+++++.......... ......
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~~--~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDLP--DDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccCC--cchhhh
Confidence 9999999999999984 6899999999999999987766554321 134455442110000000 000011
Q ss_pred eHHHHHhcCCC---CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 200 SWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 200 ~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
.++++...... ........++++++|+|| ||||.||++.++|.+...........+ ++..+|++++.+|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence 11111110000 001112236889999998 688888888888877665544433333 778899999999999
Q ss_pred HHHHHHHHH-HHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 277 HIYDQIIET-HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 277 h~~g~~~~l-~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
|.+++...+ ..+..|+++++.+. +++.+++.|+++++|+++++|++++.|++.
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~------------------------- 711 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDD------------------------- 711 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhC-------------------------
Confidence 999998744 55666666767665 999999999999999999999999988651
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC-CceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE 419 (419)
+.....++ +++|.++ |+.+++++++++.+.++ .++++.||+||
T Consensus 712 ------------~~~~~~~~--------~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE 755 (994)
T PRK07868 712 ------------PAFVLHGN--------HPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTD 755 (994)
T ss_pred ------------cCCccCCC--------CceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccc
Confidence 00000011 3789776 34599999999999986 88999999998
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=278.20 Aligned_cols=297 Identities=20% Similarity=0.217 Sum_probs=230.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
.++.+.|..++...|+.+++... ++. +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 46888889999999999988754 432 67999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHH-------HHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 123 NSQAITYVPLYDTLGANAV-------EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+++|++++|+++..+.+++ ..+++.++++.+++++........ .... .
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------------------------~ 129 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEEK------------------------G 129 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hccc------------------------C
Confidence 9999999999998876554 456777899999998754432211 1100 0
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCC-cEEEEecC
Q 014742 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE-DTYFSFLP 274 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~~p 274 (419)
.....++++..... .......++++++++|||||||.||+|+++|++++..+......+ ++..+ |++++.+|
T Consensus 130 ~~~~~~~~l~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p 202 (545)
T PRK07768 130 IRVLTVADLLAADP--IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWLP 202 (545)
T ss_pred CceeehhhhcccCC--CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeCC
Confidence 01233444443221 122344578999999999999999999999999998887765555 66665 89999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHH
Q 014742 275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA 348 (419)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
++|.+++.. ++.++..|+++++.+. ++..+++.+++++++++...|.++..+.+.++....
T Consensus 203 ~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~------------- 269 (545)
T PRK07768 203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK------------- 269 (545)
T ss_pred CccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-------------
Confidence 999999986 6678999999988753 678889999999999988878777666543211100
Q ss_pred HHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh---hCC---ceeeeccCCC
Q 014742 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGMVE 419 (419)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~tE 419 (419)
. ...++ .++|.++++|+++++.+.+++.+. +|. .+++.||+||
T Consensus 270 -----------------~---~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE 318 (545)
T PRK07768 270 -----------------P---GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAE 318 (545)
T ss_pred -----------------c---cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 0 01112 289999999999999999999874 555 4999999998
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=267.78 Aligned_cols=264 Identities=22% Similarity=0.306 Sum_probs=219.3
Q ss_pred eHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeC
Q 014742 79 TYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 79 Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
||.||.+.+++++++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCC
Q 014742 158 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPK 236 (419)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK 236 (419)
.....+..... ..+.+... +....... ...........+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 76654422211 11222111 00000111 0011111135789999999999999999
Q ss_pred eEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhc
Q 014742 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELK 312 (419)
Q Consensus 237 ~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~ 312 (419)
+|.+||+++...+..+...+ .+..+|++++..|++|.+++..++.++..|+++++.+. ++..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999988877766 78889999999999999998889999999999999876 2688999999999
Q ss_pred CeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEcc
Q 014742 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 392 (419)
Q Consensus 313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G 392 (419)
+|.+.++|.+++.+.+... ..+ +++|.+++||
T Consensus 212 ~t~l~~~p~~~~~l~~~~~----------------------------------------~~~--------~~l~~v~~~g 243 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP----------------------------------------PAL--------ASLRLVILGG 243 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh----------------------------------------hcc--------cCceEEEEeC
Confidence 9999999999999876211 112 3899999999
Q ss_pred CCCCHHHHHHHHHhhC-CceeeeccCCC
Q 014742 393 APLPIHVEEFLRVTSG-APLTQGYGMVE 419 (419)
Q Consensus 393 ~~l~~~~~~~~~~~~~-~~v~~~YG~tE 419 (419)
+++++++.+++++.++ +.+++.||+||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE 271 (408)
T TIGR01733 244 EALTPALVDRWRARGPGARLINLYGPTE 271 (408)
T ss_pred ccCCHHHHHHHHHhCCCcEEEecccCCc
Confidence 9999999999999997 89999999998
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=273.71 Aligned_cols=244 Identities=16% Similarity=0.119 Sum_probs=200.1
Q ss_pred eeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEe
Q 014742 78 LTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 78 ~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 156 (419)
+.|.||.++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred CCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCC
Q 014742 157 ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPK 236 (419)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK 236 (419)
....... .... . .......++++++++|||||||.||
T Consensus 100 ~~~~~~~----------------~~~~------------------------~---~~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 100 DQLKLSH----------------PPPL------------------------P---SQGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred Ccccccc----------------CCCC------------------------C---ccccCCCCCCcEEEEeCCCCCCCCc
Confidence 6532110 0000 0 0001134688999999999999999
Q ss_pred eEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeE
Q 014742 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315 (419)
Q Consensus 237 ~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~ 315 (419)
||++||+++...+......+ ++.+ ++.++.+|++|.+|+..++.++..|+++++.+. +.........++++++
T Consensus 137 gV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~ 210 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFF 210 (452)
T ss_pred EEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceE
Confidence 99999999998887766655 4543 467889999999999888889999999999874 3333334445789999
Q ss_pred EEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCC
Q 014742 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395 (419)
Q Consensus 316 l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l 395 (419)
++++|++++.+++. . ...+ +++|.+++||+++
T Consensus 211 ~~~vP~~l~~l~~~------------------------------------~----~~~l--------~~l~~i~~gG~~l 242 (452)
T PRK07445 211 LSLVPTQLQRLLQL------------------------------------R----PQWL--------AQFRTILLGGAPA 242 (452)
T ss_pred EEehHHHHHHHHhh------------------------------------C----hhhh--------hcceEEEECCccC
Confidence 99999999998641 0 0112 2899999999999
Q ss_pred CHHHHHHHHHhhCCceeeeccCCC
Q 014742 396 PIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 396 ~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++++.+.++. +++++++.||+||
T Consensus 243 ~~~~~~~~~~-~~~~l~~~YG~TE 265 (452)
T PRK07445 243 WPSLLEQARQ-LQLRLAPTYGMTE 265 (452)
T ss_pred CHHHHHHHHh-cCCeEecCcchhh
Confidence 9999999887 4999999999998
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=269.50 Aligned_cols=253 Identities=24% Similarity=0.312 Sum_probs=211.6
Q ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 79 Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
||.||.+.++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCe
Q 014742 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKG 237 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 237 (419)
...... . ...+..+.... ...........+++++++|||||||.||+
T Consensus 81 ~~~~~~--------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKDF--------------Q------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccce--------------e------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 321100 0 00011111111 11111223456889999999999999999
Q ss_pred EEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCCCHHHHHHHhhhhcCeEEE
Q 014742 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS 317 (419)
Q Consensus 238 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~~~~~~~~~i~~~~~t~l~ 317 (419)
|.++|+++...+......+ +..++|++++.+|++|.+++..++.++..|+++++.+.. ..+++.++++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence 9999999999888877666 788899999999999999998788999999999998642 4899999999999999
Q ss_pred ecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCH
Q 014742 318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397 (419)
Q Consensus 318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~ 397 (419)
++|.++..+.+. .... .++|.+++||+++++
T Consensus 203 ~~P~~l~~l~~~-------------------------------------~~~~------------~~l~~~~~~G~~~~~ 233 (436)
T TIGR01923 203 LVPTQLNRLLDE-------------------------------------GGHN------------ENLRKILLGGSAIPA 233 (436)
T ss_pred eHHHHHHHHHhC-------------------------------------cCCC------------CceEEEEECCCCCCH
Confidence 999999988651 0000 289999999999999
Q ss_pred HHHHHHHHhhCCceeeeccCCC
Q 014742 398 HVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 398 ~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++.++++. +|+++++.||+||
T Consensus 234 ~~~~~~~~-~~~~~~~~YG~tE 254 (436)
T TIGR01923 234 PLIEEAQQ-YGLPIYLSYGMTE 254 (436)
T ss_pred HHHHHHHH-hCCceeeEecCCc
Confidence 99999887 5999999999998
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=270.45 Aligned_cols=289 Identities=19% Similarity=0.214 Sum_probs=220.6
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEE
Q 014742 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (419)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 155 (419)
+.+||.||.+++++++++|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHhhcCccCCCCccEEEEecCCChhh-HH----HHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCC
Q 014742 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-KK----EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSG 230 (419)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 230 (419)
+......+.+.... . ..++......... .. ...........|+++..... .......+++++++||||
T Consensus 90 ~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALPA---G-VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhhc---c-cceeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCCCCCCceEEEECCC
Confidence 98766654332211 1 1111111100000 00 00000112344555543221 122335689999999999
Q ss_pred CCCCCCeEEeechhHH---HHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHH
Q 014742 231 TTGEPKGVVLTNQAIV---AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLME 306 (419)
Q Consensus 231 tTG~PK~V~~sh~~l~---~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~ 306 (419)
|||.||+|.++|.+.. .........+ ++..++++++.+|++|..+....+.++..|+++++.+. ++..+++
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 237 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQ 237 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHH
Confidence 9999999999776543 3333333333 67888999999999999888777778889999998876 9999999
Q ss_pred HhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEe
Q 014742 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386 (419)
Q Consensus 307 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr 386 (419)
.++++++|.+.++|.++..+++.... ..+..++ .++|
T Consensus 238 ~l~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------~~~~~~~--------~~l~ 274 (509)
T PRK12406 238 LIERHRITHMHMVPTMFIRLLKLPEE-----------------------------------VRAKYDV--------SSLR 274 (509)
T ss_pred HHHHcCCeEEEccHHHHHHHHhCchh-----------------------------------hcccCCC--------Ccee
Confidence 99999999999999999988642100 0011112 3899
Q ss_pred EEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 387 ~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+++||+++++++.+++.+.++..+++.||+||
T Consensus 275 ~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 307 (509)
T PRK12406 275 HVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE 307 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCcEEeeccccc
Confidence 999999999999999999988999999999998
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=262.24 Aligned_cols=317 Identities=19% Similarity=0.233 Sum_probs=247.1
Q ss_pred CCCCCHHHHH-HHHHHh-CCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH
Q 014742 40 AGLESPWQFF-CDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (419)
Q Consensus 40 ~~~~tl~~~l-~~~a~~-~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~ 117 (419)
....++.+.+ +++.+. .++.++++++ +.+.++...+||.++.+.+.++|..|+.+|+++||+|++.+|+.++.++
T Consensus 60 g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~i 136 (626)
T KOG1175|consen 60 GAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVI 136 (626)
T ss_pred cchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHH
Confidence 3445555543 444333 4889999887 4455555569999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhH------------hhcCccCCCCccEEEEecCCCh
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI------------LSCLPRCCLYLKTIVSFANVSS 185 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 185 (419)
+++||.++|++..++-..++++++...++.+++++||+.+...... +.............+.+.....
T Consensus 137 a~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 216 (626)
T KOG1175|consen 137 AMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNR 216 (626)
T ss_pred HHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccc
Confidence 9999999999999999999999999999999999999987432211 1111111011111112211111
Q ss_pred hhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHH-HHhhhhhhhhhhcCccCC
Q 014742 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEVLSVDQMFVVTGKVCS 264 (419)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~-~~~~~~~~~~~~~~~~~~ 264 (419)
...|+++........+....+.+|+.+|+|||||||.||++.+++.... ..+......+ +++
T Consensus 217 ------------d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~q 279 (626)
T KOG1175|consen 217 ------------DLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DLQ 279 (626)
T ss_pred ------------cccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cCC
Confidence 2356666565545555777889999999999999999999999998754 4444444455 899
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCch
Q 014742 265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340 (419)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~ 340 (419)
+.|++.++..+.++.+.+. .+.+|+.|+++++.+. ++..+++.+.++++|.+++.|+.++.+.....
T Consensus 280 ~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~--------- 350 (626)
T KOG1175|consen 280 PSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ--------- 350 (626)
T ss_pred CcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc---------
Confidence 9999999999999999998 6679999999999876 89999999999999999999999998755311
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCC-ceeeeccCCC
Q 014742 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE 419 (419)
.......++ +||.+.++|+++.++..+++.+.+|. +|++.||+||
T Consensus 351 --------------------------~~~~~~~~~--------sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtE 396 (626)
T KOG1175|consen 351 --------------------------EDVTSYSLK--------SLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTE 396 (626)
T ss_pred --------------------------ccccccccc--------eEEEEeecCccCCcchHHHHHHhcCccchhhceeeec
Confidence 111222122 79999999999999999999999988 6999999998
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=258.08 Aligned_cols=257 Identities=18% Similarity=0.156 Sum_probs=186.3
Q ss_pred cCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh------hhHhhcCccCCCCccEEEEecC
Q 014742 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI------PSILSCLPRCCLYLKTIVSFAN 182 (419)
Q Consensus 109 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 182 (419)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++... +.+.+... . .....++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence 5899999999999999999999999999999999999999999999986421 11111111 1 11122222211
Q ss_pred CChhhHHHHHHhCceeeeHHHHHhcCC-------CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhh
Q 014742 183 VSSSQKKEAEELGVSCFSWEEFLQLGT-------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255 (419)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~ 255 (419)
..... . .......+|+++..... .........++++++|+|||||||.||||++||++++..+......
T Consensus 79 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 154 (499)
T PLN03051 79 GEPVA-V---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH 154 (499)
T ss_pred CcccC-C---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence 10000 0 00001234555542110 0111112346899999999999999999999999988766554443
Q ss_pred hhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 014742 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 333 (419)
Q Consensus 256 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 333 (419)
+ +++.+|++++.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~--- 226 (499)
T PLN03051 155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTG--- 226 (499)
T ss_pred c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcC---
Confidence 4 67788999999999999998767888999999999864 7899999999999999999999999886410
Q ss_pred hhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh--CCce
Q 014742 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPL 411 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~--~~~v 411 (419)
.......+++ +||.+++||+++++++.+++++.+ +.++
T Consensus 227 --------------------------------~~~~~~~~~~--------~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~ 266 (499)
T PLN03051 227 --------------------------------AFAMEGLDWS--------KLRVFASTGEASAVDDVLWLSSVRGYYKPV 266 (499)
T ss_pred --------------------------------ccccccCCch--------hheEEEecCCCCCHHHHHHHHHhcccccee
Confidence 0001112233 899999999999999998888743 4789
Q ss_pred eeeccCCC
Q 014742 412 TQGYGMVE 419 (419)
Q Consensus 412 ~~~YG~tE 419 (419)
++.||+||
T Consensus 267 ~~~YG~TE 274 (499)
T PLN03051 267 IEYCGGTE 274 (499)
T ss_pred Eeeecccc
Confidence 99999998
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=208.31 Aligned_cols=222 Identities=13% Similarity=0.069 Sum_probs=164.6
Q ss_pred HHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHHHHHcCC
Q 014742 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAI 127 (419)
Q Consensus 49 l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 127 (419)
|...++.+|+++++++. ++..++.+.+||.|+.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 56788899999999854 3222223579999999999999999998 7999999999999999999999999999999
Q ss_pred eEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHhc
Q 014742 128 TYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL 207 (419)
Q Consensus 128 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (419)
+++|+| .+++++++++.+....+. . . +.++.+........ .......+..+|.+....
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRR-VAGELPPGVIDFAPEVRV 136 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccC-CCCCCCCcccchhhhhhc
Confidence 999995 678999999987766532 1 1 22233211000000 000001122356665553
Q ss_pred CCCCCCCC-CCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HH
Q 014742 208 GTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (419)
Q Consensus 208 ~~~~~~~~-~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l 285 (419)
........ ...++|+++++||||+ +|.+++.+. ... +++++|+++ .+|++|.+|+.. ++
T Consensus 137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~ 197 (227)
T TIGR03089 137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL 197 (227)
T ss_pred cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence 31222212 4466899999999985 666666554 222 788899999 999999999976 88
Q ss_pred HHHhcCceEEEeCC-CHHHHHHHhhhhcCe
Q 014742 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPT 314 (419)
Q Consensus 286 ~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t 314 (419)
.+|..|+++++.+. ++..+++.|+++|||
T Consensus 198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 198 APLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 99999999999977 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=221.78 Aligned_cols=292 Identities=22% Similarity=0.258 Sum_probs=233.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.+...+...|+..++.+. + ..+||.++..+++++|+.|++.|+.+++.|+++++.+.++++.++|
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ 296 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA 296 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence 478999999999999999998863 2 4799999999999999999999999999999999889999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
++++|+.++|+++..+.+.+..+++.++++.+++........... +. +..+... +
T Consensus 297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~----------------~ 351 (642)
T COG1020 297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL----------------S 351 (642)
T ss_pred HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc----------------c
Confidence 999999999999999999999999999999999984322211000 00 1111110 0
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
. ............+++.++++|||||||.||||..+|+++.+........+ ..+.+|+++...++.+....
T Consensus 352 ~----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~~ 422 (642)
T COG1020 352 E----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDASV 422 (642)
T ss_pred c----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchhH
Confidence 0 00001112233458999999999999999999999999999777766655 88889999999999777777
Q ss_pred HHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
..++.++..|+++++.+. ++..+.+.+.++++|.+..+|.++..+.....
T Consensus 423 ~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~-------------------------- 476 (642)
T COG1020 423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAAL-------------------------- 476 (642)
T ss_pred HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchh--------------------------
Confidence 779999999999999875 89999999999999999999999998865200
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh--CCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE 419 (419)
.... .. ....+|.+.+||+.++..+...+.... ...+.+.||.||
T Consensus 477 ----------~~~~--~~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe 523 (642)
T COG1020 477 ----------APDL--IS-----PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE 523 (642)
T ss_pred ----------hccc--cC-----CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccH
Confidence 0000 00 002489999999999999999888865 368999999998
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=172.48 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=122.7
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCC--CCcEEEEecCh
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS--EEDTYFSFLPL 275 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~l~~~pl 275 (419)
+..|.+++... ..+..++++|||||||.||+|.+||+++...+..+...+ +.. ..|++++.+|+
T Consensus 82 ~~~~~~~~~~~---------~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl 147 (386)
T TIGR02372 82 IGEWVDLIAHH---------STPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPA 147 (386)
T ss_pred HHHHHHHHHhc---------CCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCc
Confidence 44566666543 224578999999999999999999999998888766655 443 34689999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 276 AHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
+|.+|+.+ ++.++..|+++++.+. ++..+++.++.+ |++.++|.+++.+.+.
T Consensus 148 ~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~------------------------ 201 (386)
T TIGR02372 148 HHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADL------------------------ 201 (386)
T ss_pred HHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhh------------------------
Confidence 99999865 7788999999998866 888888888754 8999999999988541
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCC-ceeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE 419 (419)
+ .++ +++|. ++||+++++++++.+++. +. .++++||+||
T Consensus 202 -------------~----~~l--------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TE 241 (386)
T TIGR02372 202 -------------D----YRL--------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATE 241 (386)
T ss_pred -------------C----cCC--------Cccee-EecCCCCCHHHHHHHHHh-cccchhheecccc
Confidence 0 012 25675 678999999999999985 64 6999999998
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=161.12 Aligned_cols=150 Identities=26% Similarity=0.364 Sum_probs=120.2
Q ss_pred CCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEE
Q 014742 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG 295 (419)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~iv 295 (419)
...++++++++|||||||.||+|.++|.++...+......+ ...++++..+|++|.+++..++.++..|++++
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 103 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV 103 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence 34468999999999999999999999999998877654433 24578899999999999988888899999988
Q ss_pred Ee---CC-CHHHHHHHhhhhc--CeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhH
Q 014742 296 FW---RG-DVRYLMEDIQELK--PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369 (419)
Q Consensus 296 l~---~~-~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (419)
+. .. ++..+++.+++++ .++...+|..+..++.. +.
T Consensus 104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~-------------------------------------~~- 145 (358)
T PRK07824 104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD-------------------------------------PA- 145 (358)
T ss_pred ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhC-------------------------------------cc-
Confidence 73 22 8999999999998 56666788777665431 00
Q ss_pred HHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 370 ~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
....+ .++|.+++||+++++++.+++.+ +++++++.||+||
T Consensus 146 ~~~~~--------~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE 186 (358)
T PRK07824 146 ATAAL--------AELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSE 186 (358)
T ss_pred ccCCc--------ccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCc
Confidence 00012 38999999999999999999987 4999999999998
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=160.91 Aligned_cols=271 Identities=11% Similarity=0.084 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.++.|+|+..+..+||++|+... ++.+.+..++||.+|..++.+++..|+.. -+++||.|+++++++.|++++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 67999999999999999999988 77777778999999999999999999976 589999999999999999999999
Q ss_pred HHHcCCeEEeeccCC------ChhHHHHHHhhcCceEEEEeCCChhhHhhcC--c-cCCCCccEEEEecCCChhhHHHHH
Q 014742 122 CNSQAITYVPLYDTL------GANAVEFIINHAEVSIAFVQENKIPSILSCL--P-RCCLYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
|+.+|.+++|+.|.- ....+..+++.+++..|+++......+.+.- . .....++.++..++......
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~---- 922 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIR---- 922 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhh----
Confidence 999999999997754 3356889999999999999975433221110 0 01123444555444321100
Q ss_pred HhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEe
Q 014742 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 272 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (419)
.......+. ....+.-......+|++=+.--++|.--+|.+||..+++......+.. .+.+...++..
T Consensus 923 ------k~~~~~~k~-~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~~ 990 (1363)
T KOG3628|consen 923 ------KRKKNIKKL-NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLGC 990 (1363)
T ss_pred ------hhhhhhhcc-CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEEE
Confidence 001111111 111222233567889998888899999999999999999999987766 67777777777
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHH
Q 014742 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 332 (419)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 332 (419)
.+.+.+.|+.. ++...+.|.+.++.+. ++..+++.|+++++.-++.+=..++...+++.+
T Consensus 991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t 1056 (1363)
T KOG3628|consen 991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLET 1056 (1363)
T ss_pred ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccc
Confidence 77777778875 7888999999877753 999999999999999888877777776665444
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=156.11 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=120.7
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHH-HHHHHHhcCceEEE
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGF 296 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~l~~l~~G~~ivl 296 (419)
..++++.+++||||||.||+|.++|.++..........+. ..+..++|++++..++.+..+.. ..+..+..|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~--~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIR--AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHH--HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 4567888999999999999999999998765444322211 12677889988876554333322 34567788999887
Q ss_pred eCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHH
Q 014742 297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375 (419)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (419)
.+. +++.+++.|++++||++.++|+++..|++.++... .+ .+.
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~-------------------------------~~-~~~---- 194 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMG-------------------------------ID-PAQ---- 194 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC-------------------------------CC-ccc----
Confidence 765 88999999999999999999999999876432210 00 000
Q ss_pred HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 376 ~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.++|.+++||+++++++.+.+++.||+++++.||+||
T Consensus 195 -------~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE 231 (422)
T TIGR02155 195 -------TSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSE 231 (422)
T ss_pred -------CceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchh
Confidence 2799999999999999999999999999999999998
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=146.25 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEE
Q 014742 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIG 295 (419)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~iv 295 (419)
...++++.+.+||||||.||+|.+||.++...+......+. ..++.++|+++...++.+..+... .++++..|++++
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi 160 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII 160 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence 34568899999999999999999999998876655443321 126778899999888877655544 456678888765
Q ss_pred EeCCCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHH
Q 014742 296 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375 (419)
Q Consensus 296 l~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (419)
.. ......++.|+++++|.+.++|..+..+++.++.. | .+ .+ .
T Consensus 161 ~~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g------~~-~~---~- 203 (445)
T TIGR03335 161 PE-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------G------ID-PA---E- 203 (445)
T ss_pred cC-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------C------CC-cc---c-
Confidence 33 34456789999999999999999888776543221 0 00 00 0
Q ss_pred HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 376 ~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.++|.+++||+++++++.+.+++.||+++++.||+||
T Consensus 204 -------~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE 240 (445)
T TIGR03335 204 -------SSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTE 240 (445)
T ss_pred -------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhh
Confidence 2899999999999999999999999999999999998
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=137.55 Aligned_cols=307 Identities=15% Similarity=0.121 Sum_probs=191.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++...+.+.+...|.+++..+.+. ....+....+||.+....++.+++.|...|...|+.|++++..+.++++..++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence 34566678888999999988876644 22345556899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhh--HhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS--ILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
.+++|..+++++|.++..++...+.....-..-...+.... +...... ...+..-+ .. ...
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~--~~~~~~sv-~~--------------~~~ 176 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLN--SLFPKLSV-ET--------------IAD 176 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhh--ccccccch-hh--------------ccc
Confidence 99999999999999992111111111111001010000000 0000000 00000000 00 001
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecC-h-HH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP-L-AH 277 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p-l-~h 277 (419)
++..+.... .........++..+.+.||||+||.||+|..+|..+.....+....+ ..+..+++ ...+ . ++
T Consensus 177 ~f~~~~~~~-~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~-~~~~~~~~~ 249 (1032)
T KOG1178|consen 177 SFQMVLHNE-DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRF-TFKTSVYFD 249 (1032)
T ss_pred hhhhhhccC-CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchh-hhhheeecc
Confidence 111111111 11122234567789999999999999999999999999998876665 66666664 2221 2 12
Q ss_pred HHHHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 278 IYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 278 ~~g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
..-...+.+.|..|+.+..+.. ++..+...+++++++....+|++.+.++...... .....++
T Consensus 250 d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~--------~~~l~~~----- 316 (1032)
T KOG1178|consen 250 DTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTS--------LPLLEHA----- 316 (1032)
T ss_pred cchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcc--------hhhhhhh-----
Confidence 2112223344556665655533 4789999999999999999999988876532110 0000000
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhC--CcEeEEEEccCCCCHHHHHHHHHhh
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFG--GRLQAMLSGAAPLPIHVEEFLRVTS 407 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~lr~v~~~G~~l~~~~~~~~~~~~ 407 (419)
-.+.+..+ ..|+....+|++...++...+...+
T Consensus 317 ---------------------~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~ 351 (1032)
T KOG1178|consen 317 ---------------------FSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLL 351 (1032)
T ss_pred ---------------------hhcccccccchhheeeeecCCccchhhhhhhhhcc
Confidence 00001111 3789999999999999998666655
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=118.23 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=120.1
Q ss_pred CCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH-HHHHHHHHHHHhcCceE
Q 014742 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH-IYDQIIETHCIHKGCSI 294 (419)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h-~~g~~~~l~~l~~G~~i 294 (419)
....++...|--||||||+|+-+.+++..+...+..+...+... +...+|++....-... ..|+..-.++--.|+++
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v 163 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV 163 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence 34456677788899999999999999999998888887766443 6667787765543211 11122222333355555
Q ss_pred EEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHH
Q 014742 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373 (419)
Q Consensus 295 vl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (419)
+=... +.+.-++.++.+++|++.++|+.+..|++.++..- ...+.
T Consensus 164 ip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G--------------------------------~~~~~-- 209 (438)
T COG1541 164 IPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG--------------------------------IDPDK-- 209 (438)
T ss_pred EccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC--------------------------------CChhh--
Confidence 44433 89999999999999999999999999988655431 11222
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 374 l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
-++|.+++|+|++++++.+.+.+.||+.+++.||+||
T Consensus 210 ---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE 246 (438)
T COG1541 210 ---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE 246 (438)
T ss_pred ---------cceeEEEEecccCCHHHHHHHHHHhCCceeecccccc
Confidence 2899999999999999999999999999999999998
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=96.16 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=96.1
Q ss_pred EEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEe--cChHHHHHHHHHHHHHhcC-ceEEEeC-
Q 014742 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF--LPLAHIYDQIIETHCIHKG-CSIGFWR- 298 (419)
Q Consensus 223 ~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~--~pl~h~~g~~~~l~~l~~G-~~ivl~~- 298 (419)
..+..||||||.|-.+..+................. .+...++++... .+- +.+. .+... ..+...+
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~--~g~~~g~r~a~~~~~~~-~ly~------~~~~~~~~~~~~~l 172 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLP--DGLFAKHRIAFFLRADN-NLYQ------SVNNRWISLDFFDL 172 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCc--cccccCCcEEEEEccCh-hHHH------HHHhccceeeecCC
Confidence 556679999999999999998765433332222111 133333444333 211 1111 11111 1122221
Q ss_pred -CCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHH
Q 014742 299 -GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377 (419)
Q Consensus 299 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (419)
.+.+..++.|++++|+.+.+.|+.+..|++..+... .+
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~----------------------------------l~------- 211 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGE----------------------------------LT------- 211 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcC----------------------------------CC-------
Confidence 388999999999999999999999999987533210 00
Q ss_pred HHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 378 ~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
-+++.++++||.++++..+.+++.||++|++.||+||
T Consensus 212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE 248 (430)
T TIGR02304 212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE 248 (430)
T ss_pred -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch
Confidence 1689999999999999999999999999999999998
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-08 Score=100.44 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=182.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHH-HHHhCCCCCCCeEEEEcCCc--hhHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGS-AMRSRGVNPGDRCGIYGSNC--PEWII 117 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~g~~~gd~V~l~~~n~--~~~~~ 117 (419)
....+..+++..-.+++..+|.+.. |.++. ...+||..+..++.++|+ .|-..|+.++|+|.++...+ .++++
T Consensus 92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i 167 (1363)
T KOG3628|consen 92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI 167 (1363)
T ss_pred hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence 3445777788888899999999988 66555 788999999999999999 67788999999999999855 89999
Q ss_pred HHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 118 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
..++|...|..++|+.+..+.+++..++.....+++++.......+....... .+.+ .
T Consensus 168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--s~~k------------~-------- 225 (1363)
T KOG3628|consen 168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--SLAK------------A-------- 225 (1363)
T ss_pred hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--cHHH------------H--------
Confidence 99999999999999999999999999999999999999887665443322100 0000 0
Q ss_pred eeeHHHHHhcC---CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhh---------------hhc
Q 014742 198 CFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF---------------VVT 259 (419)
Q Consensus 198 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~---------------~~~ 259 (419)
+..|....-.+ .+....+..... .++|-||.+++|.--||+.+|. ++.+.+.+.... ...
T Consensus 226 v~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~ 303 (1363)
T KOG3628|consen 226 VAWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAH 303 (1363)
T ss_pred HHhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhh
Confidence 00010000000 001111112223 8999999999999999999998 555444332211 122
Q ss_pred CccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEec
Q 014742 260 GKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGV 319 (419)
Q Consensus 260 ~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~ 319 (419)
.......+.++.........|+++ ++.++.+|.|...+++ .+..+.+.+.+++.+++..-
T Consensus 304 v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd 368 (1363)
T KOG3628|consen 304 VFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTD 368 (1363)
T ss_pred ccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeec
Confidence 223445677777777777888887 8889999999999886 77888899999999988654
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00047 Score=65.99 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=89.4
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH---HHHHH--HHHHHHhcCc
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH---IYDQI--IETHCIHKGC 292 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h---~~g~~--~~l~~l~~G~ 292 (419)
.++++..++-||||||.|--+.+.+..+......+...+.......+..-.++...|-.. .++.. ..+..+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 356677888899999998666666666665554544443211111111223333333321 11111 1223344555
Q ss_pred eEEEeCC--CHHHHHHHh----hhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCch
Q 014742 293 SIGFWRG--DVRYLMEDI----QELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366 (419)
Q Consensus 293 ~ivl~~~--~~~~~~~~i----~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (419)
.-.+-.. |.+.+++.+ .+.++.++++.|.++-.+++.+++....
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~------------------------------ 216 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR------------------------------ 216 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc------------------------------
Confidence 5444222 666666655 4667899999999887776644432110
Q ss_pred hhHHHHHHHHHHHHhCCcEeEEEEcc------CCCC-HHHHHHHHHhhCC----ceeeeccCCC
Q 014742 367 PLLDSLVFSKIREAFGGRLQAMLSGA------APLP-IHVEEFLRVTSGA----PLTQGYGMVE 419 (419)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~lr~v~~~G------~~l~-~~~~~~~~~~~~~----~v~~~YG~tE 419 (419)
+.|+ ...+.+-.|| +.++ ++..+.+.+.||+ .+++.|||||
T Consensus 217 -----~~L~-------~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtE 268 (365)
T PF04443_consen 217 -----FRLP-------KGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTE 268 (365)
T ss_pred -----ccCC-------CCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccc
Confidence 0000 1334444443 3454 5777888888898 5999999998
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.063 Score=52.13 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=81.7
Q ss_pred EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc--hhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEE
Q 014742 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (419)
Q Consensus 77 ~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 154 (419)
-+|+.|+...+..+|+.|...|..+||+|..+..-+ ..-+...+|+.++|+.++|+.+. .-+.-..+++..++.+|.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence 479999999999999999999999999998887722 11167889999999999999883 345567889999999999
Q ss_pred EeCCChhhHhhcCccC-----CCCccEEEEecCC
Q 014742 155 VQENKIPSILSCLPRC-----CLYLKTIVSFANV 183 (419)
Q Consensus 155 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 183 (419)
+.....-.+.+..... ...++.++...+.
T Consensus 188 ~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~ 221 (438)
T COG1541 188 ATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEP 221 (438)
T ss_pred EChHHHHHHHHHHHHcCCChhhcceeEEEEeccc
Confidence 9987766555554433 2345666665444
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.11 Score=52.61 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=25.0
Q ss_pred CCCCceEEEEeCCCCCCC-CCeEEeechhHHH
Q 014742 217 KKKTNISTIMYTSGTTGE-PKGVVLTNQAIVA 247 (419)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~-PK~V~~sh~~l~~ 247 (419)
..++.+.+...||||||. ||-+.+|...+..
T Consensus 77 L~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 77 LTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp TSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 346678899999999999 9999999987755
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=89.42 E-value=3.2 Score=41.30 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=72.0
Q ss_pred EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchh--HHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEE
Q 014742 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (419)
Q Consensus 77 ~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 154 (419)
.+|..++...+...++.+...|+++||++.++.+.+.. ....++++...|+.++|... ......+++..++..++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~ 181 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV 181 (445)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence 47999999988888888888899999999998875543 23456788899998887653 23456788999999888
Q ss_pred EeCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 014742 155 VQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (419)
Q Consensus 155 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 183 (419)
........+.+...+ ....++.++...+.
T Consensus 182 ~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~ 215 (445)
T TIGR03335 182 ASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES 215 (445)
T ss_pred ECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence 765543332221111 11356666665544
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.3 Score=40.72 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=77.5
Q ss_pred CCCCCceeE--eeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCch--hHHHHHHHHHHcCCeEEeeccCCChhHHHHH
Q 014742 69 DGKVGPYVW--LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFI 144 (419)
Q Consensus 69 ~~~~~~~~~--~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~ 144 (419)
.|.++.... +|..++......+++.+...|+++||++......+. .....++++...|+.+++++... .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 444554443 577788777777777888889999999887665443 22334677889999999987754 4778899
Q ss_pred HhhcCceEEEEeCCChhhHhhcCccC-----CCCccEEEEecCC
Q 014742 145 INHAEVSIAFVQENKIPSILSCLPRC-----CLYLKTIVSFANV 183 (419)
Q Consensus 145 l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 183 (419)
++..++.+++.....+..+.+..... ...++.++...+.
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~ 206 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEP 206 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCc
Confidence 99999999999887665444322111 1245565555443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=80.44 E-value=11 Score=33.59 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.8
Q ss_pred HhCCCCCCCeEEEEcCCch--hHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCc
Q 014742 95 RSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV 150 (419)
Q Consensus 95 ~~~g~~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~ 150 (419)
...|+.++|++. .+|-.- .+...+++++..|+..+.. ++++++++...+++.++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV 226 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence 556889999999 888443 3445689999999998887 68999999999888765
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 419 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 6e-13 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-09 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-07 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 4e-07 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 5e-07 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 5e-07 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-06 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-06 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-06 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 2e-05 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 2e-05 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 3e-05 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 4e-05 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 9e-05 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-04 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-04 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 1e-04 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-04 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-04 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 1e-04 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 1e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-04 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-04 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-04 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-04 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-04 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-04 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 8e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-43
Identities = 63/345 (18%), Positives = 120/345 (34%), Gaps = 72/345 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y E+ A R + + +RG+ GDR E ++ A Y+PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ I AE I +K I + + ++T+
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
S + + + +++ I+YTSGTTG KG +L++ + + L++ +
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
T +D LP+ H + + ++ + S+ F D +++ + + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATV 245
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
GVP Y R+ +P L
Sbjct: 246 LMGVPTFYTRLL-------------------------------------QSPRLTKETTG 268
Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGMVE 419
+R +SG+APL E+ T G + + YGM E
Sbjct: 269 HMR--------LFISGSAPLLADTHREWSAKT-GHAVLERYGMTE 304
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 5e-42
Identities = 64/386 (16%), Positives = 121/386 (31%), Gaps = 77/386 (19%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+R + G +Y E + + G A+++ G+ R
Sbjct: 26 GTQLRKYMERYAKLGAIAFTNAVTGVD-----YSYAEYLEKSCCLGKALQNYGLVVDGRI 80
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
+ NC E+ I + A + P + + + ++ +I F + + +++
Sbjct: 81 ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC-------ELPPKK 218
++ + V + F++ T + +
Sbjct: 141 VQKTVTTIKTIVILDSKVDYR----------GYQCLDTFIKRNTPPGFQASSFKTVEVDR 190
Query: 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
K ++ IM +SG+TG PKGV LT++ IV G S + +P H
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVVPFHHG 248
Query: 279 YDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
+ + G + F D ++ +Q+ K T VP ++
Sbjct: 249 FGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKCTSVILVPTLFA---------- 295
Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
L+K + LL+ S + + SG AP
Sbjct: 296 ----ILNK-----------------------SELLNKYDLSNLV--------EIASGGAP 320
Query: 395 LPIHV-EEFLRVTSGAPLTQGYGMVE 419
L V E R + + QGYG+ E
Sbjct: 321 LSKEVGEAVARRFNLPGVRQGYGLTE 346
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 69/380 (18%), Positives = 122/380 (32%), Gaps = 76/380 (20%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+ ++ + L ++G V TY +V A R S + G+ GD
Sbjct: 25 HSYVLENLSNHSSKPCL--INGANGDV-----YTYADVELTARRVASGLNKIGIQQGDVI 77
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
++ + PE+++A + + + + + Q +
Sbjct: 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
+ + + S + C + E Q + ++ +
Sbjct: 138 FARESDVKVMCVDSAPD--------------GCLHFSELTQADENEAPQVDISPDDVVAL 183
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
Y+SGTTG PKGV+LT++ ++ V ED LP+ HIY
Sbjct: 184 PYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIM 242
Query: 286 HC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
C + G I F ++ L+ I++ K ++ VP V ++
Sbjct: 243 LCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPVVPPVMM--------------SI 285
Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
+K +P LD S +R + SG APL +
Sbjct: 286 AK-----------------------SPDLDKHDLSSLR--------MIKSGGAPLGKELE 314
Query: 400 EEFLRVTSGAPLTQGYGMVE 419
+ A L QGYGM E
Sbjct: 315 DTVRAKFPQARLGQGYGMTE 334
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-41
Identities = 62/343 (18%), Positives = 104/343 (30%), Gaps = 68/343 (19%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY ++ A R + + G+ GDR + N E+ VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A V FI++ + + P I + + T+ +
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-PGTVTDWIGAD------------- 149
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
S E L+ D + IMYTSGTTG PKGVV T++++ + S
Sbjct: 150 --SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMF 316
V D LP+ H+ +G ++ D + I E + +
Sbjct: 208 VR-----YRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 262
Query: 317 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSK 376
VP + + + P L
Sbjct: 263 GAVPAILNFMR-------------------------------------QVPEFAELDAPD 285
Query: 377 IREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
R ++G AP+P + + + QGY + E
Sbjct: 286 FR--------YFITGGAPMPEALIKIYAAK-NIEVVQGYALTE 319
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 5e-41
Identities = 65/390 (16%), Positives = 127/390 (32%), Gaps = 88/390 (22%)
Query: 46 WQFFCDSAKRIPNN----QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
+A++ + + + E+ + + S + +GV
Sbjct: 22 ADRIDAAAEKFGEKTAIISAEPKFPSEFPES-----MNFLEICEVTKKLASGISRKGVRK 76
Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
G+ G+ N ++++ + A A T VP+ + +E I+N +E + V
Sbjct: 77 GEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE 136
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP-KKKT 220
+ L + ++ + +G S E + G+ D E +
Sbjct: 137 NFKPVLEKTG--VERVFV--------------VGGEVNSLSEVMDSGSEDFENVKVNPEE 180
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+++ I YT GTTG PKGV+LT+ + A L + ++ DT +P+ H +
Sbjct: 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-----MDTIVGCMPMFHSAE 235
Query: 281 QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
+ + G F + L E+I++ K T VP +
Sbjct: 236 FGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWAVPPALN------------ 280
Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
L N + +S ++ +GA P+
Sbjct: 281 --VLV---------------------NTLESSNKTYDWSYLK--------VFATGAWPVA 309
Query: 397 IHVEE-FLRVT------SGAPLTQGYGMVE 419
+ E L++ Q +GM E
Sbjct: 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 9e-41
Identities = 61/354 (17%), Positives = 118/354 (33%), Gaps = 72/354 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +N ++ ++ FV + + IL+ + + K I+ +++
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIM----------DSKTDYQG 160
Query: 198 CFSWEEFLQ----LGTLDCELPPKK---KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
S F+ G + + P+ I+ IM +SG+TG PKGV L ++
Sbjct: 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 220
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLME 306
+ G + S +P H + + G + F + +
Sbjct: 221 HARD--PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLR 275
Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
+Q+ K VP ++ +K +
Sbjct: 276 SLQDYKIQSALLVPTLFS--------------FFAK-----------------------S 298
Query: 367 PLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGMVE 419
L+D S + + SG APL V E + + QGYG+ E
Sbjct: 299 TLIDKYDLSNLH--------EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 56/344 (16%), Positives = 100/344 (29%), Gaps = 71/344 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+++ A R S + GV+ GDR I NC E I + A +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A+ + F++ S+ + + LP +K + + S
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG-VKKAYAIGDGSG------------ 138
Query: 198 CFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ F L P + I++T+ G P+G +++ ++ S+ +
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196
Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
+T E D LPL H+ + G + D DI+ K T+
Sbjct: 197 RLT-----EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTV 251
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
+ + I +
Sbjct: 252 MAEFAPMLGNI---------------------------------------LDQAAPAQLA 272
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+R A+ P +E F A +G E
Sbjct: 273 SLR--------AVTGLDTPET--IERFEATCPNATFWATFGQSE 306
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 3e-40
Identities = 57/377 (15%), Positives = 110/377 (29%), Gaps = 76/377 (20%)
Query: 47 QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
+ A++ ++ + G TYQ +Y A + R
Sbjct: 5 FWLYKQAQQNGHHIAITDGQES-----------YTYQNLYCEASLLAKRL---KAYQQSR 50
Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164
G+Y N + II + AC I + L N + + +V + F
Sbjct: 51 VGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF 110
Query: 165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIST 224
+ + ++ + + + + +I++
Sbjct: 111 QIVSLDDI---EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIAS 167
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
IM+TSGTTG K V T + A + + + + S LP+ HI +
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-----RDTNWLSVLPIYHISGLSVL 222
Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
+ +G ++ + ++ I+ + T S VP+ + +
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM---------------- 266
Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEF 402
L + LQ +L G A L + E
Sbjct: 267 ---------------------QQGLHEPY-----------NLQKILLGGAKLSATMIETA 294
Query: 403 LRVTSGAPLTQGYGMVE 419
L+ P+ +GM E
Sbjct: 295 LQY--NLPIYNSFGMTE 309
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 4e-39
Identities = 75/383 (19%), Positives = 126/383 (32%), Gaps = 74/383 (19%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+ + L +G G TY +V+ + + + GVN D
Sbjct: 64 HDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDVV 116
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
+ NCPE++++ A + + T + + + + + I
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN---I 222
+ + I +V + C + E Q T E+ + + +
Sbjct: 177 LQNDDGVVIVCIDDNESVPIPE---------GCLRFTELTQSTTEASEVIDSVEISPDDV 227
Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
+ Y+SGTTG PKGV+LT++ +V V +D LP+ HIY
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALN 286
Query: 283 IETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
C + G +I F ++ L+E IQ K T+ VP +
Sbjct: 287 SIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVAPMVPPIVL------------- 330
Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
A++K + + S IR + SGAAPL
Sbjct: 331 -AIAK-----------------------SSETEKYDLSSIR--------VVKSGAAPLGK 358
Query: 398 HV-EEFLRVTSGAPLTQGYGMVE 419
+ + A L QGYGM E
Sbjct: 359 ELEDAVNAKFPNAKLGQGYGMTE 381
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-37
Identities = 67/381 (17%), Positives = 112/381 (29%), Gaps = 79/381 (20%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
+ + + D TY E+ + A RF SA+R+ GV+P +R
Sbjct: 27 AYLFRLNETRAGKTAY----IDDTGS-----TTYGELEERARRFASALRTLGVHPEERIL 77
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
+ + +A + V L +++ H+ + ++
Sbjct: 78 LVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA 137
Query: 167 LPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
L + IVS + E +EE + + +I+
Sbjct: 138 LESAEHDGCQLIVS---------QPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFW 188
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC---SEEDTYFSFLPLAHIYDQI 282
+Y+SG+TG+PKG V T+ + + K +E D FS L Y
Sbjct: 189 LYSSGSTGKPKGTVHTHANLYW-------TAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 283 IETH-CIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
+ G + + + E +PT+F GVP T
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP-------T----------- 283
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
Y L +P L + IR S LP +
Sbjct: 284 --------LYANML-----------VSPNLPARADVAIRIC--------TSAGEALPREI 316
Query: 400 -EEFLRVTSGAPLTQGYGMVE 419
E F G + G G E
Sbjct: 317 GERFTAHF-GCEILDGIGSTE 336
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 48/344 (13%), Positives = 95/344 (27%), Gaps = 67/344 (19%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+ E+ + + + G+ P R + N + +IA+ A + L L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + +I E++ A + + + + + I +
Sbjct: 90 SAELAELIKRGEMTAAVIAVG--RQVADAIFQSGSGARIIF-----------------LG 130
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ E P ++ + I YTSGTTG PK ++ +A + VL +
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV- 189
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
G + +PL H+ + + ++ +Q+ + T
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
P D L + +
Sbjct: 248 LFATPTHLDA------------------------------------------LAAAAAHA 265
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
L+ + A +P V E + YG E
Sbjct: 266 GSSLKL-DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE 308
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-35
Identities = 57/344 (16%), Positives = 107/344 (31%), Gaps = 86/344 (25%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ AA + + R ++ + E +A+ A + VPL G
Sbjct: 49 LTYAELAAAAGAT-----AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ I++ + S+ +
Sbjct: 104 DKELAHILSDSAPSLVLAPP-------------------------------DAELPPALG 132
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ + + ++YTSGTTG PKG V+ +A+ + ++ +
Sbjct: 133 ALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
T ED LPL H++ ++ + +G S+ ++ + TM
Sbjct: 193 WT-----GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATM 246
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
GVP +Y R + ++L
Sbjct: 247 LFGVPTMYHR------------------------------------------IAETLPAD 264
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+ ++SG+A LP+H E + +G + + YGM E
Sbjct: 265 PELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE 308
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 3e-30
Identities = 46/349 (13%), Positives = 93/349 (26%), Gaps = 68/349 (19%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y+E+ AA ++R +G+ PG+ + N E I A + V +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 138 ANAVEFIINHAEVSIAFVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
+ + + E ++ L+ ++ +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN------------ 158
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
+ ++ + D P ++ + GTTG PK + T+ V
Sbjct: 159 -DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSIGFWRG-DVRYLMEDIQE 310
++ T ++ Y +P AH Y G ++ I++
Sbjct: 218 EICQFT-----QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEK 272
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
+ + + VP
Sbjct: 273 HQVNVTALVPPAVSLWL-----------------------------------QALIEGES 297
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
+ L+ + G A L + + G L Q +GM E
Sbjct: 298 RAQLA--------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE 338
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 58/390 (14%), Positives = 111/390 (28%), Gaps = 99/390 (25%)
Query: 46 WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
D A + + + G +Y+E+ A R + + G+ D
Sbjct: 28 GDLLRDRAAKYGDRIAITCGNTH-----------WSYRELDTRADRLAAGFQKLGIQQKD 76
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---- 159
R + N E+ + A V + ++ + + AE + + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 160 ----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 215
+ S LP LK I+ EAEE + L T +LP
Sbjct: 137 YRSLARQVQSKLP----TLKNIIVAG--------EAEE-------FLPLEDLHTEPVKLP 177
Query: 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275
K ++++ + + G+TG K + T+ + + ++ + Y + LP+
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD-----HSTVYLAALPM 232
Query: 276 AHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
AH Y ++ G + I+ K T+ + VP +
Sbjct: 233 AHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVPPLAMVWM-- 287
Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
A S ++ +
Sbjct: 288 -----------------------------------DAASSRRDDLSSLQ--------VLQ 304
Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419
G A ++ G L Q +GM E
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAE 334
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 43/384 (11%), Positives = 91/384 (23%), Gaps = 83/384 (21%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+ + P++ + + + L+Y E+ + + + +G+ GD
Sbjct: 33 TRILTVGVQSHPHSLAI----ICGERQ-----LSYIELDRLSTNLATRLAEKGLGKGDTA 83
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN----KIP 161
+ N E+ I A + + + + I + +
Sbjct: 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNN 143
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
+ L L + I+ + W E +
Sbjct: 144 QFIDSLHDVNLSPEIILML---------NHQATDFGLLDWIE--TPAETFVDFSSTPADE 192
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
++ + G+TG PK + T+ V + ++ + LP H +
Sbjct: 193 VAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-----SNTRLLCALPAPHNFML 247
Query: 282 IIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335
+H G + + IQ + M S VP
Sbjct: 248 SSPGALGVLHAGGCVVMAPNP---EPLNCFSIIQRHQVNMASLVPSAVIMWL-------- 296
Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
++ + G A
Sbjct: 297 -----------------------------EKAAQYKDQIQSLK--------LLQVGGASF 319
Query: 396 PIHVEEFLRVTSGAPLTQGYGMVE 419
P + + L Q +GM E
Sbjct: 320 PESLARQVPEVLNCKLQQVFGMAE 343
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-22
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 25/253 (9%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
++E+ + + + + + G+ GDR + PEW + + C + ++P +
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
+ + + + ++ + I + + C L+ + + E+
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVS----------EKSCD 182
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
++++ L + S I +TSGT+G PK + ++ +
Sbjct: 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242
Query: 257 VVTGKVCSEEDTYFSFLPLA---HIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
+ D ++ +I ++E G D +++ +
Sbjct: 243 GLQ-----ASDIMWTISDTGWILNILCSLMEP--WALGACTFVHLLPKFDPLVILKTLSS 295
Query: 311 LKPTMFSGVPRVY 323
G P VY
Sbjct: 296 YPIKSMMGAPIVY 308
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 8e-19
Identities = 79/382 (20%), Positives = 120/382 (31%), Gaps = 119/382 (31%)
Query: 67 VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
VS G TY EVY A R +R+ GV GDR G N +EA
Sbjct: 37 VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR---HLEA----- 88
Query: 127 ITY--VPLYDTLGA-----------NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
Y VP +GA + +I+NHAE + N +P + +
Sbjct: 89 --YFAVPG---MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKT 142
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
++ V E+ ++EE L +P + + YT+GTTG
Sbjct: 143 VQHFVVM----------DEKAPEGYLAYEEALGEEADPVRVP---ERAACGMAYTTGTTG 189
Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS 293
PKGVV +++A+V L+ + SE+D +P+ H +
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFH--------------VN 232
Query: 294 ------IGFWRG----------DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
G D L+E T +GVP V+
Sbjct: 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW-------------- 278
Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
L D L + ++ G+A
Sbjct: 279 -----------------LA-----------LADYL--ESTGHRLKTLRRLVVGGSAAPRS 308
Query: 398 HVEEFLRVTSGAPLTQGYGMVE 419
+ F R+ G + QGYG+ E
Sbjct: 309 LIARFERM--GVEVRQGYGLTE 328
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 16/176 (9%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T++++ + + + G+ GD + + ++ M + VP L
Sbjct: 87 FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146
Query: 138 ANAVEFIINHAEVS--IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ + I A + + +++ + C I E
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC----GDIPLKKAKVGGDVLEGWI-- 200
Query: 196 VSCFSWEEFLQLGTLDCELP-PKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVA 247
+ + L+ + E P + T I + ++SGT G PK V N +
Sbjct: 201 ----DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 23/201 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY+++ A + +++ G PGDR + + I A C VP+Y
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
++ K I++ P L + + + + L +
Sbjct: 101 EKLLD----------------KAQRIVTNSKPVIVLMIADHIKKF-TADELNTNPKFLKI 143
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ E + + K +I+ + YTSG+T PKGV++++ ++ + + F
Sbjct: 144 PAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203
Query: 257 VVTGKVCSEEDTYFSFLPLAH 277
+ +E FS+LP H
Sbjct: 204 HMN-----DETIIFSWLPPHH 219
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 25/230 (10%)
Query: 53 AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112
A+ P++ G + LT+ ++Y + + G GDR I
Sbjct: 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92
Query: 113 PEWIIAMEACNSQAITYVPLYDTLGANAVE---FIINHAEVSIAFVQENKIPSILSCLPR 169
E+++A VPL G E +++ + + + ++ + R
Sbjct: 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152
Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTS 229
E S + + + + + YTS
Sbjct: 153 --------------------RPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTS 192
Query: 230 GTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKVCSEEDTYFSFLPLAHI 278
G+T P GVV+++Q + + + + S+LP H
Sbjct: 193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 37/175 (21%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
L+Y+E+ + A R ++ G G +Y E +I + + Y+P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI-----LGVLKAGAAYLPV 544
Query: 133 YD-TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
D L + + +++ + + + + T+ ++
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTHQ----EMKEQAAELPYTGTTLFIDDQTRFEEQASD 599
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
+ P + + IMYTSGTTG+PKG + T+ I
Sbjct: 600 ------------------PATAIDPN---DPAYIMYTSGTTGKPKGNITTHANIQ 633
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 49/207 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
LTY E+ A + +G+ GI + I + A+ YVP+
Sbjct: 65 LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI-----LAVLKAGGAYVPI 119
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
+++I++ ++ + Q+ ++ + +
Sbjct: 120 DIEYPKERIQYILDDSQARMLLTQK----HLVHLIHNIQFNGQVE--------------- 160
Query: 193 ELGVSCFSWEEFLQLGT--LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
F + L T+++ ++YTSGTTG PKG +L ++ I +
Sbjct: 161 -----IFEEDTIKIREGTNLHVPSKS---TDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 212
Query: 251 SVDQMFVVTGKVCSEEDTY-----FSF 272
+ VT E+D SF
Sbjct: 213 FFENSLNVT-----EKDRIGQFASISF 234
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 41/174 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
+ Y+++ D+A + + PG G+YG E I + AI Y+ +
Sbjct: 53 VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL-----LAILLSGHHYLYI 107
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
A + + + S+ A
Sbjct: 108 DLKQPAAWNAELCRQVDCRLILDC----------------------------STTPTPAN 139
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
L I+ I ++SGTTG PK + T+ I
Sbjct: 140 GLPCVPVRHLPAAPASVARPCFAA---DQIAYINFSSGTTGRPKAIACTHAGIT 190
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 68/264 (25%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
+TY+++ + + + S + +YG PE II Y+P+
Sbjct: 27 ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINF-----LGCVKAGHAYIPV 81
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
++ A+ V+ I ++ + + L LK I ++
Sbjct: 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTP------ 135
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
+ + I+YTSG+TG PKGV +T +V+
Sbjct: 136 ----------------NPEHAVKG---DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWA 176
Query: 253 DQMFVVTGKVCSEEDTY-----FSF--------LPL---AHIYDQIIETHCIHKGCSIGF 296
+ F + + FSF L ++ +
Sbjct: 177 VEDFNLQ-----TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLW---AIDKDMIA------ 222
Query: 297 WRGDVRYLMEDIQELKPTMFSGVP 320
+ L +++ +++ P
Sbjct: 223 ---RPKDLFASLEQSDIQVWTSTP 243
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
++Y+E++ RF + + G+ GD IY PE +AM AC
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 33/184 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
TY+++ + A + + + + G + + I TYVP+
Sbjct: 56 WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII-----VGIMKSGNTYVPI 109
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
L + F++ + ++AFV +N + L K N+S+
Sbjct: 110 EAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD----- 164
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
+ P + ++YTSG+TG PKGV ++ + + +
Sbjct: 165 --------------TSDILNNYPE---NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207
Query: 253 DQMF 256
++
Sbjct: 208 GKLI 211
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 37/174 (21%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-----YVPL 132
TY ++ + + + S + ++G+ + + A+T Y+P+
Sbjct: 30 RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF-----VALTKSGHAYIPV 84
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
+ II A+ S+ E + P + + L
Sbjct: 85 DVHSAPERILAIIEIAKPSLIIAIE-EFPLTIEGISLVSL-------------------- 123
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
L + K + I++TSGTTG+PKGV +++ ++
Sbjct: 124 -----SEIESAKLAEMPYER-THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 78 LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E+ + + + S GV GD +Y PE II + A
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 159
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-05
Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 27/202 (13%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+ + + GTTG PK VV + I A + + +T + HI
Sbjct: 92 SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGR-PSGNTLAAIPTGPHIVG 150
Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
I + + G D R++ + E + V + + + N + +
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSE---GDTATVRKYTHHLVDQVQNTLMNQDI- 206
Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPIHV 399
+ L P P+L L+ ++ L + G L +
Sbjct: 207 -RFLV-------------TTP-----PVLRELLKRPEVVLQMKQSLAQITLGGTELNLDE 247
Query: 400 EEFLR--VTSGAPLTQGYGMVE 419
+F+ + + YG
Sbjct: 248 IKFIASEILPDCEFSASYGSTS 269
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF 272
I+YTSG+TG PKGV ++ + + + F V+ + FSF
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-----GGKIFLNQAPFSF 195
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 49/349 (14%), Positives = 93/349 (26%), Gaps = 117/349 (33%)
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
+LG GK W+ S V I+ W+ ++
Sbjct: 158 VLGS-----GKT----WVA-----------LDVCLSYKVQCKMDFKIF------WL-NLK 190
Query: 121 ACNSQAITYVP---LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC---LPRCCLYL 174
CNS L + N + + + + L C L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 175 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGE 234
NV +++ +W F L C K
Sbjct: 251 ------LNVQNAK------------AWNAF----NLSC------KI-------------- 268
Query: 235 PKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
++ T V + LS + S + + P D++
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHI-----SLDHHSMTLTP-----DEVKSL--------- 306
Query: 295 GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354
++YL Q+L + + PR +S + N+K
Sbjct: 307 -L----LKYLDCRPQDLPREVLTTNPRR-----------LSIIAESIRDGLATWDNWKHV 350
Query: 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
N K +++ L+ L ++ R+ F ++ +A +P + +
Sbjct: 351 NCDKLTTIIESS--LNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLI 395
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 419 | |||
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.91 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.87 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.87 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.87 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.86 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.82 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.69 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.67 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 90.12 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 83.7 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 81.28 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 80.97 |
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=361.63 Aligned_cols=307 Identities=14% Similarity=0.144 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|..+++.+||++|+++. + +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999964 3 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111222222344555666554321
Q ss_pred eeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 198 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
...+.++.... ..........++++++|+|||||||.||||+++|+++...+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 12344444433 222222455689999999999999999999999999999999877776 888999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 277 h~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++..
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------- 299 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA----------------------- 299 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHH-----------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhch-----------------------
Confidence 9999984 7788999999999987 9999999999999999999999999987631
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....++ ++||.+++||+++++++.+++++.+|+++++.||+||
T Consensus 300 --------------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 343 (544)
T 3o83_A 300 --------------AQYKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAE 343 (544)
T ss_dssp --------------TTTHHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTT
T ss_pred --------------hhccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccc
Confidence 1122234 3999999999999999999999999999999999998
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=365.59 Aligned_cols=319 Identities=20% Similarity=0.231 Sum_probs=266.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCC--CCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC
Q 014742 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG--KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN 111 (419)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n 111 (419)
..|..+.+..++.++|.++++.+||++|+++. ++ ..+..+++||.||.++++++|++|++.|+++||+|+++++|
T Consensus 10 ~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 10 GFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 34556677889999999999999999999986 42 12334689999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHH
Q 014742 112 CPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 112 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (419)
+++++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+....... ....+++.+..
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE-------- 156 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS--------
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999999999998777665544322 34556655432
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCC-CceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (419)
..++.++..............+ +++++|+|||||||.||||+++|+++.+.+......+ ++.++|+++
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 225 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIV 225 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEE
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEE
Confidence 3356666655422223333334 8999999999999999999999999999998877777 888999999
Q ss_pred EecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHH
Q 014742 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY 349 (419)
Q Consensus 271 ~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (419)
+.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|.++..|++.......
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------- 291 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------- 291 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------
Confidence 99999999999888888999999999977 999999999999999999999999999764332100
Q ss_pred HhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----hC---CceeeeccCCC
Q 014742 350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGMVE 419 (419)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE 419 (419)
..++ +++|.+++||+++++++.+++.+. ++ +++++.||+||
T Consensus 292 ---------------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 339 (549)
T 3g7s_A 292 ---------------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339 (549)
T ss_dssp ---------------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGG
T ss_pred ---------------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccc
Confidence 0011 389999999999999999999988 66 89999999998
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=367.56 Aligned_cols=327 Identities=20% Similarity=0.263 Sum_probs=265.4
Q ss_pred CCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCC
Q 014742 22 GGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101 (419)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~ 101 (419)
+..++++......+|. ..++.++|.++++.+||++|+++. +++ +.+||.||.++++++|++|++.|+++
T Consensus 5 ~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~ 73 (536)
T 3ni2_A 5 EEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQ 73 (536)
T ss_dssp CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred cceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456666654433332 588999999999999999999864 222 58999999999999999999999999
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEec
Q 014742 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181 (419)
Q Consensus 102 gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (419)
||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+.+..... .. .++.++
T Consensus 74 gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~~ 150 (536)
T 3ni2_A 74 GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCVD 150 (536)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEESS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEec
Confidence 999999999999999999999999999999999999999999999999999999987766554433221 12 344444
Q ss_pred CCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCc
Q 014742 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK 261 (419)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~ 261 (419)
.... ....+.++........+.....++++++|+|||||||.||||+++|+++.+.+....... ....
T Consensus 151 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~ 218 (536)
T 3ni2_A 151 SAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPNL 218 (536)
T ss_dssp CCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCSS
T ss_pred CCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cccc
Confidence 3211 245566666544333344456789999999999999999999999999998776543211 0112
Q ss_pred cCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCc
Q 014742 262 VCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339 (419)
Q Consensus 262 ~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (419)
.+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+++
T Consensus 219 ~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------- 287 (536)
T 3ni2_A 219 YFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK----------- 287 (536)
T ss_dssp CCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHT-----------
T ss_pred cCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHh-----------
Confidence 5778999999999999999976 7889999999999977 99999999999999999999999999865
Q ss_pred hHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCC
Q 014742 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMV 418 (419)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~t 418 (419)
.+..+..++ ++||.+++||+++++++.+++++.+ ++++++.||+|
T Consensus 288 --------------------------~~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~T 333 (536)
T 3ni2_A 288 --------------------------SPDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMT 333 (536)
T ss_dssp --------------------------CSCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECG
T ss_pred --------------------------CcccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccccc
Confidence 111122223 3899999999999999999999998 89999999999
Q ss_pred C
Q 014742 419 E 419 (419)
Q Consensus 419 E 419 (419)
|
T Consensus 334 E 334 (536)
T 3ni2_A 334 E 334 (536)
T ss_dssp G
T ss_pred c
Confidence 8
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=364.49 Aligned_cols=325 Identities=19% Similarity=0.258 Sum_probs=259.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCch
Q 014742 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP 113 (419)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~ 113 (419)
..|..+.+..|+.++|.+.++++|+++|++... ++.. .+.+||+||.++++++|++|++.|+++||+|+++++|++
T Consensus 11 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 86 (550)
T 3rix_A 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL 86 (550)
T ss_dssp CCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Confidence 345666778999999999999999999986220 1111 158999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHH
Q 014742 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 114 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+..... ..+.+..++.++.....
T Consensus 87 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 87 QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB-------
T ss_pred cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccc-------
Confidence 9999999999999999999999999999999999999999999987766654432 23456677776654221
Q ss_pred hCceeeeHHHHHhcC-CC------CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCC
Q 014742 194 LGVSCFSWEEFLQLG-TL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~ 266 (419)
....++.++.... .. ..+.....++++++|+|||||||.||||+++|+++...+......+ ...++.++
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~ 234 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPD 234 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTT
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCC
Confidence 1244566655433 11 1112222457899999999999999999999999998877654431 11367789
Q ss_pred cEEEEecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHH
Q 014742 267 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345 (419)
Q Consensus 267 d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (419)
|++++.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------- 298 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS---------------- 298 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC----------------
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC----------------
Confidence 999999999999999888889999999999877 999999999999999999999999998751
Q ss_pred HHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCc-eeeeccCCC
Q 014742 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGMVE 419 (419)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++.+++++.++.. +++.||+||
T Consensus 299 ---------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE 344 (550)
T 3rix_A 299 ---------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344 (550)
T ss_dssp ---------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGG
T ss_pred ---------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCc
Confidence 11222223 3899999999999999999999999876 999999998
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=359.17 Aligned_cols=306 Identities=21% Similarity=0.248 Sum_probs=250.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....|+.++|.++++.+||++|+++. +.. .++||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 44788999999999999999999875 321 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987665543332211 11111111110 01
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.+.+.........+.....++++++|+|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 224 (517)
T 3r44_A 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA 224 (517)
T ss_dssp HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence 233444333333344456789999999999999999999999999999998877766 888999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
++...+.+++.|+++++.+. ++..+++.|.++++|++.++|+++..+.+.
T Consensus 225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------- 275 (517)
T 3r44_A 225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV----------------------------- 275 (517)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHS-----------------------------
T ss_pred HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-----------------------------
Confidence 99875555559999999877 999999999999999999999999998652
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+.....++ ++||.+++||+++++++.+.+.+. ++++++.||+||
T Consensus 276 --------~~~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE 319 (517)
T 3r44_A 276 --------PEFAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTE 319 (517)
T ss_dssp --------HHHHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGG
T ss_pred --------cccccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccc
Confidence 11222222 389999999999999999999997 999999999998
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=363.64 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++|+++.++.+++.++++.++++++|++..... ..........+.++.+++.++...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111234444554443210
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
+.++..............++++++++|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (539)
T ss_dssp ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence 11121211111123345678999999999999999999999999999988877766 7889999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.+|..|+++++.+. ++..+++.|+++++|++.++|+++..+++.....
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------- 293 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------- 293 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC---------------------
T ss_pred cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc---------------------
Confidence 999974 7889999999999877 9999999999999999999999999987632210
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..++ ++||.+++||+++++++.++|++.+|+++++.||+||
T Consensus 294 ----------------~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 334 (539)
T 1mdb_A 294 ----------------RDDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE 334 (539)
T ss_dssp ----------------CCCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTT
T ss_pred ----------------CCCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCC
Confidence 0112 3899999999999999999999989999999999998
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=354.65 Aligned_cols=308 Identities=23% Similarity=0.293 Sum_probs=254.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+.+. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999863 21 2236899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++.+..+.+..... ..+.++.++++++... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------cccccH
Confidence 99999999999999999999999999999999999877665544332 2344556666654321 013456
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhh--hhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
+++...... .....++++++|+|||||||.||||++||+++...+... ...+ +++++|++++.+|++|.+
T Consensus 161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 665443311 134467899999999999999999999999998776542 2223 678899999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 288 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------ 288 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc------------------------
Confidence 98777888999999999864 9999999999999999999999999987643211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..++ ++||.+++||+++++++.++| +.+|+++++.||+||
T Consensus 289 -------------~~~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE 328 (541)
T 1v25_A 289 -------------GHRL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTE 328 (541)
T ss_dssp -------------TCCC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGG
T ss_pred -------------CCcc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccc
Confidence 0011 389999999999999999999 557999999999998
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=353.89 Aligned_cols=297 Identities=18% Similarity=0.223 Sum_probs=240.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
++|+.++|.+.++.+||++|+.+. +++ +++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEE--eCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
|+++|++++|+++.++.+++.++++.++++++|+ +....+.+.... ...+ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence 9999999999999999999999999999999999 665444331211 1111 222
Q ss_pred eHHHHHhcC-----CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccC--CCCcEEEEe
Q 014742 200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF 272 (419)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (419)
++++.... ..........++++++|+|||||||.||||+++|+++.+.+......+ ++ .++|++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 22221110 111112345678999999999999999999999999998888766555 56 788999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 99999999864 8889999999999987 9999999999999999999999999987631100
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+..++ ++||.+++||+++++++.++|++.++.++++.||+||
T Consensus 266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 308 (504)
T 1t5h_X 266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE 308 (504)
T ss_dssp ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETT
T ss_pred ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccc
Confidence 000011 3899999999999999999999999999999999998
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=354.71 Aligned_cols=315 Identities=15% Similarity=0.170 Sum_probs=255.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 39 ~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
|..++...++|+.+++.+||++|+++. +. .+..+.+||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 344555669999999999999999975 32 23447899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh--hhHhhcCccCCCCc-cEEEEecCCChhhHHHHHHhC
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 195 (419)
++||+++|++++|+++.++.+++.++++.+++++||++.+.. ..+...... .+.+ ..++.++....
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAE-CGDIPLKKAKVGGDVL---------- 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHH-HCSCCCEEEEESSSCC----------
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhh-CCCcceEEEEeCCccc----------
Confidence 999999999999999999999999999999999999998764 333332222 1233 44455543211
Q ss_pred ceeeeHHHHHhcCCCCCC-C---CCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEE
Q 014742 196 VSCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (419)
..+.++.+.......... . ....++++++|+|||||||.||||.++|.++...+......+ ++.+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 124566666654422111 1 245789999999999999999999999999888776644444 7888999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEeC--C-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~ivl~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
..|++|..++.. ++.++..|+++++.+ . ++..+++.|+++++|+++++|++++.|.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------ 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS------------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc------------------
Confidence 999999888876 778899999999873 3 999999999999999999999999988641
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....++ ++||.+++||+++++++.++|++.+|+++++.||+||
T Consensus 334 --------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE 377 (580)
T 3etc_A 334 --------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTE 377 (580)
T ss_dssp --------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTT
T ss_pred --------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEeccccccc
Confidence 0112223 3899999999999999999999999999999999998
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=362.48 Aligned_cols=323 Identities=18% Similarity=0.252 Sum_probs=257.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
.+++.++|+++++.+||++|+++. +.+.+..+++||.||.++++++|+.|+ +.|+++||+|+++++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 467889999999999999999986 333344578999999999999999999 9999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh---------hHhhcCccCCCCccEEEEecCCChhhHHHH
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (419)
||+++|++++|+++.++.+++.++++.+++++||+++.... .+.+... ..+.++.+++++.........
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~- 235 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPSVAF- 235 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSSCCC-
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCcccc-
Confidence 99999999999999999999999999999999999876532 1222222 223456677765421100000
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (419)
.......|.++........+.....++++++|+|||||||.||||+++|+++...+.. ....+ ++.++|+++
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 236 --HAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp --CSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred --CCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 0012346777765443223334556899999999999999999999999998866643 33334 788899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|.+++.. ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+..
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-------------- 374 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG-------------- 374 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcC--------------
Confidence 9999999999965 7899999999999863 7899999999999999999999999885410
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
....+..++ ++||.+++||+++++++++++.+.+| +++++.||+||
T Consensus 375 ---------------------~~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 423 (663)
T 1ry2_A 375 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423 (663)
T ss_dssp ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred ---------------------ccccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence 000111122 38999999999999999999999888 89999999998
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=361.85 Aligned_cols=323 Identities=15% Similarity=0.211 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+++.++|+++++.+||++|+++. +.+.+..+++||.||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 456888999999999999999975 43334557899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh---------hHhhcCccCC-CCccEEEEecCCChhhHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (419)
|+++|++++|+++.++.+++.++++.+++++||+++.... .+.+...... ..++.+++++........
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-- 229 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-- 229 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC--
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc--
Confidence 9999999999999999999999999999999999875421 1212211110 134566666532210000
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (419)
.......|+++..............++++++|+|||||||.||||+++|++++..+.. ....+ ++.++|+++
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 230 --QEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp --CBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred --cCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0001346777766443223334456799999999999999999999999998876643 33344 788999999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|.+++.. ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|++...
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------- 369 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD------------- 369 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG-------------
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc-------------
Confidence 9999999999965 8899999999999863 78999999999999999999999999865210
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++++++.+.+| +++++.||+||
T Consensus 370 ----------------------~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 370 ----------------------KAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp ----------------------GGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred ----------------------cccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 00111122 38999999999999999999999888 89999999998
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=352.35 Aligned_cols=312 Identities=20% Similarity=0.285 Sum_probs=250.1
Q ss_pred CCCHHH-HHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~-~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..++.+ +|...++.+ |++|+++. +++ +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 358999 888889999 99999863 221 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.++++++|++....+.+...... .+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEeCCccc---------cccccc
Confidence 9999999999999999999999999999999999999877655443221 122345555543210 001234
Q ss_pred HHHHHhcCCCC-CCCCCC------CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEec
Q 014742 201 WEEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273 (419)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~------~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (419)
|+++....... .+.... .++++++|+|||||||.||||++||+++...+......+ ...++.++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT--TSCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh--hccCCCccceEEEec
Confidence 66665443111 111111 238999999999999999999999999998887755541 012677899999999
Q ss_pred ChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 274 PLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 274 pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+.
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------- 300 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS---------------------- 300 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC----------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC----------------------
Confidence 9999999987 56667 9999999876 999999999999999999999999998651
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
+..+..++ ++||.+++||+++++++.+++++.+ +.++++.||+||
T Consensus 301 ---------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 346 (548)
T 2d1s_A 301 ---------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTE 346 (548)
T ss_dssp ---------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGG
T ss_pred ---------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeecccccc
Confidence 11111122 3899999999999999999999999 688999999998
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=348.85 Aligned_cols=312 Identities=16% Similarity=0.232 Sum_probs=255.0
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCch
Q 014742 40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP 113 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~-----~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~ 113 (419)
...+++.++|.++++. +||++|+++. +. .+..+++||.||.++++++|++|++. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456678999999998 9999999975 32 22346899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHH
Q 014742 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 114 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+++++++||+++|++++|+++.++.+++.++++.+++++||++....+.+..... ..+.++.++.+++...
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999988766644332 2244556666654211
Q ss_pred hCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHH--HhhhhhhhhhhcCccCCCCcEEEE
Q 014742 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS 271 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~l~ 271 (419)
.....++++..............++++++|+|||||||.||||+++|+ ++. ..... ..+ +++++|++++
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~ 252 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT 252 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence 013456666554422223344568999999999999999999999999 544 33332 333 7888999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEeC--C-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~ivl~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
.+|++|.+++.. ++.++..|+++++.+ . ++..+++.|+++++|+++++|.+++.+++.
T Consensus 253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------ 314 (570)
T 3c5e_A 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------------------ 314 (570)
T ss_dssp CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS------------------
T ss_pred cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc------------------
Confidence 999999999985 788999999999986 3 999999999999999999999999998641
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. .+..++ ++||.+++||+++++++.++|++.+|+++++.||+||
T Consensus 315 -------------------~-~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE 358 (570)
T 3c5e_A 315 -------------------D-LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTE 358 (570)
T ss_dssp -------------------C-TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETT
T ss_pred -------------------c-cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhh
Confidence 0 000112 3899999999999999999999989999999999998
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=346.73 Aligned_cols=301 Identities=19% Similarity=0.244 Sum_probs=248.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....|+.++|.++++.+||++|+++. + +++||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45789999999999999999999974 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++....+.+..... .......++.+++...
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------- 138 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG-------------- 138 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------
Confidence 9999999999999999999999999999999999999988776444442 2345666666654321
Q ss_pred eHHHHHh-cCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 200 SWEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.+.++.. ............++++++|+|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 213 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHV 213 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcch
Confidence 1222222 11223334456789999999999999999999999999999998877766 88899999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+++...+.++..|++.++... ++..+++.|+++++|+++++|.++..+++..
T Consensus 214 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--------------------------- 266 (509)
T 3ivr_A 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---------------------------
T ss_pred hHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---------------------------
Confidence 999886665555555555444 9999999999999999999999999987631
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
...++ +++|.++.+|++ ++.+.+.+.+ ++++++.||+||
T Consensus 267 ------------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE 306 (509)
T 3ivr_A 267 ------------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSE 306 (509)
T ss_dssp ------------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGG
T ss_pred ------------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccc
Confidence 01112 389999999987 8888999888 999999999998
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=348.96 Aligned_cols=310 Identities=15% Similarity=0.172 Sum_probs=241.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..++.++|.++++.+||++|+++....++.++..+++||.||.++++++|++|++.|+ +||+|+++++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 46899999999999999999999862111234445789999999999999999999996 99999999999999999999
Q ss_pred HHHHcCCeEEeecc---CCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCC-CccEEEEecCCChhhHHHHHHhCc
Q 014742 121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 121 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
||+++|++++|+++ .++.+++.++++.+++++||++......+......... ....++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 78899999999999999999999888776554432211 112233322111
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCC------CcEEE
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTYF 270 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d~~l 270 (419)
.............++++++|+|||||||.||||++||+++.+++......+ .... +|+++
T Consensus 169 ---------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l 234 (480)
T 3t5a_A 169 ---------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV 234 (480)
T ss_dssp ---------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred ---------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence 111112233445678999999999999999999999999999988877766 5555 89999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +.++|.++..++.....
T Consensus 235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------ 301 (480)
T 3t5a_A 235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------ 301 (480)
T ss_dssp ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence 9999999999875 7889999999999862 899999999999999 88999999887652110
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC------CceeeeccCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGMV 418 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~t 418 (419)
.+..+..++ ++||.+++||+++++++.++|++.++ ..+++.||+|
T Consensus 302 ---------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T 352 (480)
T 3t5a_A 302 ---------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA 352 (480)
T ss_dssp ---------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred ---------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence 111112223 38999999999999999999999884 3799999999
Q ss_pred C
Q 014742 419 E 419 (419)
Q Consensus 419 E 419 (419)
|
T Consensus 353 E 353 (480)
T 3t5a_A 353 E 353 (480)
T ss_dssp T
T ss_pred c
Confidence 8
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=351.11 Aligned_cols=291 Identities=18% Similarity=0.201 Sum_probs=240.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
+|+.+.|.++++.+||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999975 3 58999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (419)
+++|++++|+++.++.+++.++++.++++++|++....... .. ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 00 0111110 112
Q ss_pred HHHhcC--CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
++.... ....+.....++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 122223345679999999999999999999999999999998877766 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.+++.|+++++.+. ++..+++.++++++|++.++|.++..++..
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 252 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME--------------------------- 252 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS---------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh---------------------------
Confidence 8888899999999999874 899999999999999999999999887531
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
......++ +++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 253 ----------~~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE 298 (512)
T 3fce_A 253 ----------ASFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298 (512)
T ss_dssp ----------TTCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred ----------ccccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccCh
Confidence 11111112 3899999999999999999999998 899999999998
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=345.19 Aligned_cols=311 Identities=19% Similarity=0.229 Sum_probs=243.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
...+++.++|..+++ +||++|+++. + +++||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 445669999999999 9999999864 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCc-cEEEEecCCChhhHHHHHHhCcee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
+||+++|++++|+++.++.+++.++++.++++++|++....+.+...... .... ..+++.+..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES-AEHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHC-C---CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhh-ccccCceEEEecccccc--------cccc
Confidence 99999999999999999999999999999999999998766554433211 1222 344444432110 0012
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhH-HHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
..++++..............++++++++|||||||.||||+++|+++ ..........+ ++.++|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHH
Confidence 34666655332222334456899999999999999999999999999 56655544434 7888999999999999
Q ss_pred HHHHHH-HHHHHhcCceEEEe-CC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII-ETHCIHKGCSIGFW-RG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~-~l~~l~~G~~ivl~-~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.++..|+++++. +. ++..+++.|+++++|+++++|+++..+++.
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 291 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS------------------------- 291 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC-------------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC-------------------------
Confidence 999876 67889999999987 34 999999999999999999999999988641
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...+.... .++|.+++||+++++++.+++++.+|+++++.||+||
T Consensus 292 ---------~~~~~~~~-----------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE 336 (529)
T 2v7b_A 292 ---------PNLPARAD-----------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTE 336 (529)
T ss_dssp ---------TTCCCGGG-----------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTT
T ss_pred ---------cccccccC-----------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhh
Confidence 00000000 2799999999999999999999999999999999998
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=348.68 Aligned_cols=307 Identities=15% Similarity=0.179 Sum_probs=254.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 36789999999988 999999964 3 689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
||+++|++++|+++..+.+++.++++.+++++++++..... ...............+...++...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999987541 111111112234445555544321
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
..+.+...............++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 163 --HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp --TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 1233444433233334455678999999999999999999999999999999887777 888999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 277 h~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++......
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 296 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE------------------- 296 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC-------------------
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc-------------------
Confidence 9999884 7889999999999876 99999999999999999999999999876432110
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. ..++ ++||.+++||+++++++.++|.+.+|+++++.||+||
T Consensus 297 ------------~----~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE 338 (617)
T 3rg2_A 297 ------------S----RAQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE 338 (617)
T ss_dssp ------------C----TTTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETT
T ss_pred ------------c----cccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCc
Confidence 0 0011 3899999999999999999999999999999999998
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=347.85 Aligned_cols=288 Identities=17% Similarity=0.198 Sum_probs=239.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|.+.++.+||++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999974 3 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++......+ .....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~--------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA--------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc---------------
Confidence 99999999999999999999999999999999999997654322 1122222211110
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.............++++++|+|||||||.||||+++|+++.+.+.. ...+ +++++|++++.+|++|..
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 267 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSWDA 267 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTSST
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccHHH
Confidence 0011122233456899999999999999999999999999876654 2222 678899999999999877
Q ss_pred HHHHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+...++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++...
T Consensus 268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------------------- 322 (570)
T 4gr5_A 268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP------------------------- 322 (570)
T ss_dssp HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-------------------------
Confidence 76678889999999999863 89999999999999999999999999875210
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
. .+ ++||.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 323 ------------~---~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE 363 (570)
T 4gr5_A 323 ------------E---AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE 363 (570)
T ss_dssp ------------G---GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred ------------h---hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhh
Confidence 0 12 3899999999999999999999887 899999999998
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=344.53 Aligned_cols=290 Identities=18% Similarity=0.247 Sum_probs=245.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+|+.+.|.++++.+||++|+.+. + +++||+||.++++++|++|++. |.++|++|+++++|+++++++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999975 888999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++....... ... . .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~~---~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VGQ---Q----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CCC---S----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---ccc---c----------------------cceecH
Confidence 999999999999999999999999999999999976543211 000 0 013344
Q ss_pred HHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+++.... ..........++++++|+|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 5554433 222223345678999999999999999999999999999998877766 7889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+++.
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 251 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD--------------------------- 251 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS---------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc---------------------------
Confidence 8888899999999999864 899999999999999999999999988641
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
+.....++ +++|.+++||+++++++.+++++.+ ++++++.||+||
T Consensus 252 ----------~~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE 297 (511)
T 3e7w_A 252 ----------PGFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE 297 (511)
T ss_dssp ----------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGG
T ss_pred ----------cccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccch
Confidence 11111112 3899999999999999999999998 899999999998
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=344.89 Aligned_cols=299 Identities=21% Similarity=0.342 Sum_probs=241.5
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcC
Q 014742 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (419)
Q Consensus 47 ~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G 126 (419)
++|.+.++.+|+++++..... ++ +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 468899999999999985310 22 579999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHh
Q 014742 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ 206 (419)
Q Consensus 127 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (419)
++++|+++.++.+++.++++.++++++|++....+.+....... . ..+..++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976544332222111 1 13333332211 11222222
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HH
Q 014742 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (419)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l 285 (419)
............++++++|+|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|.+|+.. .+
T Consensus 142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence 22222333455689999999999999999999999999999998877776 8889999999999999999865 77
Q ss_pred HHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCC
Q 014742 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364 (419)
Q Consensus 286 ~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (419)
.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++.
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~----------------------------------- 259 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS----------------------------------- 259 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTC-----------------------------------
T ss_pred HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhC-----------------------------------
Confidence 88999999999887 9999999998 899999999999998651
Q ss_pred chhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+.....++ +++|.+++||+++++++.++|.+.+|.++++.||+||
T Consensus 260 --~~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 260 --PRLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp --TTCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred --CCccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 11111112 3899999999999999999999999999999999998
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=368.25 Aligned_cols=335 Identities=21% Similarity=0.260 Sum_probs=262.8
Q ss_pred CCCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCC
Q 014742 19 KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG 98 (419)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g 98 (419)
.+....+|++......+ ....|+.++|.+.++.+||++|+++. +.+ +++||.||.++++++|++|++.|
T Consensus 41 ~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~G 109 (979)
T 3tsy_A 41 NNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLG 109 (979)
T ss_dssp ----CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcC
Confidence 34445566665543222 23689999999999999999999864 222 58999999999999999999999
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEE
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 178 (419)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++||++....+.+....... ...++
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~ 186 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---GVVIV 186 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---CCEEE
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---CceEE
Confidence 999999999999999999999999999999999999999999999999999999999987765544332211 12344
Q ss_pred EecCCChhhHHHHHHhCceeeeHHHHHhcCC---CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhh
Q 014742 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGT---LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255 (419)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~ 255 (419)
.+++.... ........+.++..... ...+.....++++++|+|||||||.||||+++|+++...+......
T Consensus 187 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 260 (979)
T 3tsy_A 187 CIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG 260 (979)
T ss_dssp ECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCS
T ss_pred EeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHh
Confidence 44432110 00112445555543331 1223345678999999999999999999999999999887654321
Q ss_pred hhhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 014742 256 FVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 333 (419)
Q Consensus 256 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 333 (419)
. .....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+.
T Consensus 261 ~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---- 335 (979)
T 3tsy_A 261 E-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS---- 335 (979)
T ss_dssp S-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC----
T ss_pred h-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC----
Confidence 1 01225778999999999999999976 7888999999999987 999999999999999999999999998652
Q ss_pred hhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCcee
Q 014742 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLT 412 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~ 412 (419)
......++ ++||.+++||+++++++.+++++.+ +++++
T Consensus 336 ---------------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~ 374 (979)
T 3tsy_A 336 ---------------------------------SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLG 374 (979)
T ss_dssp ---------------------------------GGGGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred ---------------------------------ccccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence 11111222 3899999999999999999999998 89999
Q ss_pred eeccCCC
Q 014742 413 QGYGMVE 419 (419)
Q Consensus 413 ~~YG~tE 419 (419)
+.||+||
T Consensus 375 ~~YG~TE 381 (979)
T 3tsy_A 375 QGYGMTE 381 (979)
T ss_dssp ECEECGG
T ss_pred eeechhh
Confidence 9999998
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=347.98 Aligned_cols=285 Identities=17% Similarity=0.173 Sum_probs=238.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|.+.++.+||++|+++. + +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4679999999999999999999975 3 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.+++++|+++....... ...... ...
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~------------------- 147 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVR------------------- 147 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGG-------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eec-------------------
Confidence 9999999999999999999999999999999999776433211 011111 100
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
.. .............++++++|+|||||||.||||+++|+++.+.+.. ...+ ++.++|++++.+|++|.++
T Consensus 148 --~~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 148 --HL-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp --GC-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred --cC-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 00 0001112223446899999999999999999999999999887765 3334 7888999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 281 QIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+..++.+|..|+++++.+. ++..+++.|+++++|++.++|.+++.+.+.
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---------------------------- 270 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL---------------------------- 270 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc----------------------------
Confidence 8889999999999999752 999999999999999999999999998651
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.+ .++ ++||.+++||++++++..+++.+.+ ++++++.||+||
T Consensus 271 --------~~----~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 313 (620)
T 4dg8_A 271 --------DP----DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313 (620)
T ss_dssp --------CG----GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred --------Ch----hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhh
Confidence 00 012 3899999999999998888887766 899999999998
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=349.40 Aligned_cols=309 Identities=19% Similarity=0.206 Sum_probs=248.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
.+..|+.++|..+++.+||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35789999999999999999999876 42 22368999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCC---hhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 120 EACNSQAITYVPLYDTLG---ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
|||+++|++++|+++..+ .+++.++++.+++++++++.+....+.............+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 999999999999999884 5789999999999999999776554432221111111111111
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
..+.+..............++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++++|++
T Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 147 ---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp ---EGGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ---echhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 111111111112233455689999999999999999999999999999999877766 888999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 277 h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.++.
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------ 280 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------ 280 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence 9999987 8889999999999864 789999999999999999999999988763211
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC------CceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++.++|.+.++ .++++.||+||
T Consensus 281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE 331 (590)
T 3kxw_A 281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAE 331 (590)
T ss_dssp ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGG
T ss_pred ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 11111122 38999999999999999999999883 37999999998
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=339.64 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|...++.+||++|+.+. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++.+...... .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432210 11 1 1122
Q ss_pred HHHHh---cCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 202 EEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 202 ~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.++.. ............++++++|+|||||||.||||++||+++.+.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 22211 11122233455689999999999999999999999999998777654431 1367788999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+...
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 255 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS------------------------- 255 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-------------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-------------------------
Confidence 988878889999999999864 899999999999999999999999887541
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
......++ +++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 256 ------------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 301 (521)
T 3l8c_A 256 ------------DDFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTE 301 (521)
T ss_dssp ------------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred ------------hccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccH
Confidence 00111112 3899999999999999999999988 899999999998
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=340.30 Aligned_cols=306 Identities=19% Similarity=0.217 Sum_probs=237.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
+|+.++|.++++.+||++|+++. + +++||+||.++++++|++|++. +||+|+++++|+++++++++||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999964 3 5899999999999999999986 8999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCcee-eeH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSW 201 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 201 (419)
+++|++++|+++.++.+++.++++.++++++|++............ ...+..+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999999876543322111 01111111100000000 00000000 001
Q ss_pred HHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+...... ..........++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 1111111 011122345689999999999999999999999999999998877766 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------- 269 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG----------------------------- 269 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC-----------------------------
Confidence 9888899999999999987 9999999999999999999999999986520
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.... .+||.+++||+++++++.+++++ +++++++.||+||
T Consensus 270 --------~~~~-----------~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE 309 (501)
T 3ipl_A 270 --------LHEP-----------YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTE 309 (501)
T ss_dssp --------CCSC-----------TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGG
T ss_pred --------CCCc-----------CcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccc
Confidence 0000 27999999999999999999998 5999999999998
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=336.57 Aligned_cols=286 Identities=17% Similarity=0.234 Sum_probs=235.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++......+.... ....+..++....
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 167 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI---------------- 167 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh----------------
Confidence 9999999999999999999999999999999999986554432211 1112333322100
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
.............++++++|+|||||||.||||++||+++.+.+......+ +++++|++++.+|++|.+++
T Consensus 168 ----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 238 (563)
T 1amu_A 168 ----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV 238 (563)
T ss_dssp ----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred ----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence 000011112234678999999999999999999999999998887766655 78899999999999999998
Q ss_pred HHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+..
T Consensus 239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------------------------- 289 (563)
T 1amu_A 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP----------------------------- 289 (563)
T ss_dssp HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----------------------------
T ss_pred HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----------------------------
Confidence 778889999999999864 89999999999999999999999877632
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.. + .++|.+++||+++++++.++|++. +++++.||+||
T Consensus 290 --------~~------~--------~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE 327 (563)
T 1amu_A 290 --------ER------I--------LSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTE 327 (563)
T ss_dssp --------TT------C--------CSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGG
T ss_pred --------cc------c--------ccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCH
Confidence 00 1 389999999999999999999884 89999999998
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=332.21 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=239.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCC----CCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~ 115 (419)
.+..++.++|.++++.+||++|+++. ++ .....+++||+||.++++++|++|++.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45788999999999999999999875 32 12234689999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 116 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+++++||+++|++++|+++.++.+++.++++.++++++|++........ ......++....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~------------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN------------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence 9999999999999999999999999999999999999999876543321 011112222111
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhh---hcCccCCCCcEEEEe
Q 014742 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---VTGKVCSEEDTYFSF 272 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~~ 272 (419)
..+.+...............++++++|+|||||||.||||+++|+++.+.+......+. .....+...+++++.
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 11222222222222233445788999999999999999999999999988776544321 112357778999999
Q ss_pred cChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
.|++|..++..++.++..|+++++.+. .+..+++.++++++|++.++|++++.+..
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---------------------- 288 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---------------------- 288 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence 999998888778889999999998765 56788999999999999999998876521
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ .++ ++||.+++||+++++++.++|++.+++++++.||+||
T Consensus 289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 330 (562)
T 3ite_A 289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE 330 (562)
T ss_dssp ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGG
T ss_pred ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccch
Confidence 11 012 3899999999999999999999988999999999998
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.47 Aligned_cols=287 Identities=21% Similarity=0.297 Sum_probs=232.4
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd-~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
.++.++.+.|.++++.+|+ ++|+++. + +++||+||.++++++|++|+ .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 3467888889999999887 9999874 3 68999999999999998874 488999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCcee
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
++||+++|++++|+++.++.+++.++++.++++++|++...... .....+..+ ..+..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~~-~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALERV-DVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEEE-ECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhcccccc-ccccc---------------
Confidence 99999999999999999999999999999999999998753110 011111111 11110
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.....+.....++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0011223345678999999999999999999999999999999887777 88899999999999999
Q ss_pred HHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 279 YDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 279 ~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+..
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~------------------------ 263 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPA------------------------ 263 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGG------------------------
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhc------------------------
Confidence 99976 8899999999999876 999999999 88999999999999998763211
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ .....++ ++|.+++||+++++++.+++++.+|.++++.||+||
T Consensus 264 ---------~~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 308 (505)
T 3nyq_A 264 ---------DP-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE 308 (505)
T ss_dssp ---------CH-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETT
T ss_pred ---------Cc-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhh
Confidence 11 1222343 899999999999999999999999999999999998
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=347.93 Aligned_cols=291 Identities=17% Similarity=0.218 Sum_probs=241.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..++.++|...++.+||++|+++. + +.+||.||.++++++|++|++.|+++|++|+++++|+++++++++
T Consensus 462 ~~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 532 (1304)
T 2vsq_A 462 ETKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532 (1304)
T ss_dssp CCCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 3478999999999999999999875 3 489999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++||+|.++.+++.++++.+++++|+++......+... +.....+.+++..
T Consensus 533 ailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 591 (1304)
T 2vsq_A 533 GVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT---------------- 591 (1304)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG----------------
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc----------------
Confidence 9999999999999999999999999999999999998654432111 1122333333210
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
.. . .....+.....++++++|+|||||||.||||+++|+++.+.. .....+ +++++|+++...|++|..+
T Consensus 592 --~~-~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 --RF-E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp --GG-G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred --cc-c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 0 111122234568999999999999999999999999998763 333333 7888999999999999888
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
...++.+|..|+++++.+. ++..+++.|.++++|++.++|.+++.+.+.
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~--------------------------- 714 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA--------------------------- 714 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh---------------------------
Confidence 8778999999999999864 899999999999999999999999988641
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.. ..++ +||.+++||+++++++.++|.+.+ +.++++.||+||
T Consensus 715 ---------~~----~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 757 (1304)
T 2vsq_A 715 ---------GE----DWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE 757 (1304)
T ss_dssp ---------CS----HHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGG
T ss_pred ---------ch----hcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhH
Confidence 00 1122 899999999999999999999888 478999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-25 Score=210.27 Aligned_cols=148 Identities=19% Similarity=0.217 Sum_probs=128.5
Q ss_pred CCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeC
Q 014742 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (419)
Q Consensus 219 ~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~ 298 (419)
.+++++|+|||||||.||||++||+++.+++......+ +++++|++++.+|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 36889999999999999999999999999999877777 8899999999999999999988889999999999986
Q ss_pred CCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHH
Q 014742 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 378 (419)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (419)
. ....++.|+++++|++.++|+++..+++.. . ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~----------------------------------~----~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENS----------------------------------A----TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCT----------------------------------T----TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccc----------------------------------c----ccccC----
Confidence 4 223467899999999999999999987510 0 11123
Q ss_pred HHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 379 ~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++||.+++||+++++++.+++++ +|+++++.||+||
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE 183 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTE 183 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGG
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEecccccc
Confidence 28999999999999999999998 5999999999998
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=191.27 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=126.3
Q ss_pred CCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceEE
Q 014742 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG 295 (419)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~iv 295 (419)
..+++++.++|||||||.||+|.++|+++...+......+ ...++.++|++++.+|+ +|.+++...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGY--QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTT--TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhH--HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence 4678899999999999999999999999998887543322 12367889999999999 99999988777799999 55
Q ss_pred EeCC-CHH-----------------------HHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 296 FWRG-DVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 296 l~~~-~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
++.. ++. .+++.|+++++|++.++|+++..|++.
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~---------------------- 222 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR---------------------- 222 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC----------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh----------------------
Confidence 5543 777 788899999999999999999998652
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH-Hhh-CCceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE 419 (419)
+.....+++ ++|.+++||+++++++.++++ +.| ++++++.||+||
T Consensus 223 ---------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE 269 (369)
T 3hgu_A 223 ---------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269 (369)
T ss_dssp ---------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGG
T ss_pred ---------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchh
Confidence 122223343 899999999999999999999 999 899999999998
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=192.93 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=131.4
Q ss_pred CCCC-CceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHH-HHHHHHhcCce
Q 014742 216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS 293 (419)
Q Consensus 216 ~~~~-~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~l~~l~~G~~ 293 (419)
...+ +++++++|||||||.||+|+++|+++...+......+. ..++.++|++++.+|+.|..+.. .++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3445 88999999999999999999999999877666533221 12678899999999987666655 47788999999
Q ss_pred EEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHH
Q 014742 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372 (419)
Q Consensus 294 ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (419)
+++.+. ++..+++.|+++++|+++++|+++..|++..+..... .
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------------~----- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------------P----- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------------------T-----
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------------------c-----
Confidence 998866 9999999999999999999999999998753321000 0
Q ss_pred HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 373 ~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ +++|.+++||+++++++.+++++.||+++++.||+||
T Consensus 204 ~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 242 (436)
T 3qov_A 204 RE--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTE 242 (436)
T ss_dssp TS--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGG
T ss_pred cc--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchh
Confidence 01 3899999999999999999999999999999999998
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=190.51 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=132.3
Q ss_pred CCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCce
Q 014742 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCS 293 (419)
Q Consensus 215 ~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~ 293 (419)
....++++++++|||||||.||+|+++|+++...+......+. ..+++++|++++.+|+ +|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 3446789999999999999999999999999877655433211 1267889999999998 678777777888999999
Q ss_pred EEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHH
Q 014742 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372 (419)
Q Consensus 294 ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (419)
+++.+. +++.+++.|+++++|+++++|+++..|++..+... .. .+
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------------------------------~~-~~-- 208 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG-------------------------------LD-PV-- 208 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT-------------------------------CC-GG--
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC-------------------------------CC-cc--
Confidence 998776 99999999999999999999999999876433210 00 00
Q ss_pred HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 373 ~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+ +++|.+++||+++++++.+++++.+|+++++.||+||
T Consensus 209 -~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 209 -Q--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp -G--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred -c--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 1 3899999999999999999999989999999999998
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=189.60 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=131.4
Q ss_pred CCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceE
Q 014742 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (419)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~i 294 (419)
...++++++++|||||||.||+|+++|+++...+......+. ..++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 446789999999999999999999999999876655443211 1277889999999998 5777776678889999999
Q ss_pred EEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHH
Q 014742 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373 (419)
Q Consensus 295 vl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (419)
++.+. +++.+++.|+++++|+++++|+++..|++..+... .. . .
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------------------------------~~-~---~ 210 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG-------------------------------MD-P---A 210 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT-------------------------------CC-G---G
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC-------------------------------CC-c---c
Confidence 98876 99999999999999999999999999876433210 00 0 0
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 374 l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+ +++|.+++||+++++++.+++++.+|+++++.||+||
T Consensus 211 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 211 E--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred c--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 1 3899999999999999999999999999999999998
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=1 Score=43.10 Aligned_cols=125 Identities=16% Similarity=0.065 Sum_probs=88.9
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc--hhHHHHHHHHHHcCCeEEee
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~vpl 132 (419)
++.++.+.. ..|.++..+ .+|...+...+..+++.+...|+.++|++...++-+ ...+...++++..|+..+++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455554433 144444433 479999988888888888888999999999988853 33455578889999999877
Q ss_pred ccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 014742 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (419)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 184 (419)
+. .+.+.+...++..++.+++.....+..+.+.... ....++.+++..+.-
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 222 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPW 222 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccC
Confidence 65 4788899999999999999887766655443211 124677777766543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.99 Score=43.23 Aligned_cols=125 Identities=15% Similarity=0.044 Sum_probs=89.1
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc--hhHHHHHHHHHHcCCeEEee
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~vpl 132 (419)
++.++.+... .|.++..+ .+|...+...+..+++.+...|+.++|++...++-+ ...+...++++..|+..+++
T Consensus 91 ~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4555543321 45555544 469999998888888888888999999999988853 33455678888999998887
Q ss_pred ccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 014742 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (419)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 184 (419)
+.. +.+.+...++..++.+++.....+..+.+.... ....++.+++.++.-
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 224 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPW 224 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcC
Confidence 654 788899999999999999887766655443211 124677777766543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.89 Score=43.45 Aligned_cols=124 Identities=11% Similarity=-0.037 Sum_probs=89.2
Q ss_pred CCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHHcCCeEEeec
Q 014742 58 NNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVPLY 133 (419)
Q Consensus 58 d~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n--~~~~~~~~lA~~~~G~~~vpl~ 133 (419)
+.++.+.. ..|.++..+ .+|...+...+..+++.+...|+.++|++....+- ....+..+++++..|+..++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44554432 144444433 57999999988888888888899999999999874 3444556788899999988876
Q ss_pred cCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 014742 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (419)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 184 (419)
. ...+.+...++..++.+++.....+..+.+.... ....++.+++.++.-
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 218 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH 218 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence 5 4678899999999999999888766655543211 135677777766543
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=1.7 Score=43.17 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.4
Q ss_pred CCCceEEEEeCCCCC-CCCCeEEeechhHHH
Q 014742 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (419)
Q Consensus 218 ~~~~~~~i~~TSGtT-G~PK~V~~sh~~l~~ 247 (419)
.++.+.+..-||||| |.+|-+.+|...+-.
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 456777889999999 779999999998755
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=83.70 E-value=9.2 Score=36.96 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=86.1
Q ss_pred CCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH-HHHHHHHHHcCCeEEee
Q 014742 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (419)
Q Consensus 56 ~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~vpl 132 (419)
.|+.++++..- .|.++..+ .+|...+...+..... ..++.++|++...+|-.-.+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 45677765441 34444433 5798888877665544 35889999999988854332 34467788889988876
Q ss_pred ccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCC
Q 014742 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184 (419)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (419)
+ ..+.+.+...++..++..++.....+..+.+........++.++...+.-
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l 286 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKL 286 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCC
Confidence 5 47889999999999999999998877766665444334677777666543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=81.28 E-value=14 Score=35.66 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=77.5
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++. .+..+|++.+...+..+...+.. .++.++|++...++-... ....+++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLR--DGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 366777664 12579999999999998887744 377889999988876533 334578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+++.+.....+.+
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 65 88899999999999999999887776544
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=80.97 E-value=21 Score=34.96 Aligned_cols=105 Identities=7% Similarity=-0.111 Sum_probs=79.3
Q ss_pred CCceEEEEeCCCC-CCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 219 KTNISTIMYTSGT-TGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 219 ~~~~~~i~~TSGt-TG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
++.++++....+. .+. .-.+|++.+...+..+...+.. .++.++|++...++-... .+..+++++..|+..+..
T Consensus 33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 5677776653221 111 2478999999999998887744 378889999988876533 334578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+++.+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 65 88899999999999999999888776644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 419 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 4e-40 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-34 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-32 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-26 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-22 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 1e-20 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-20 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 149 bits (377), Expect = 4e-40
Identities = 49/363 (13%), Positives = 105/363 (28%), Gaps = 64/363 (17%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
++Y+E++ RF + + G+ GD IY PE +AM AC + +
Sbjct: 99 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158
Query: 133 YDTLGANAVEFIINHAEVSIAFVQE------NKIPSILSCLPRCCLYLKTIVSFANVSSS 186
+ AV I + + + IP + T V V
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218
Query: 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
+ + W + ++ + + + + I+YTSG+TG+PKGV+ T +
Sbjct: 219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 278
Query: 247 AEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG----- 299
+ +F D Y+ + + + + G + + G
Sbjct: 279 VYAATTFKYVFDYH-----PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
+ + + + + + P +
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIRALM-------------------------------- 361
Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVT--SGAPLTQGYG 416
+ ++ S +R + S P+ E + + P+ +
Sbjct: 362 ---AEGDKAIEGTDRSSLR--------ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 410
Query: 417 MVE 419
E
Sbjct: 411 QTE 413
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 133 bits (336), Expect = 1e-34
Identities = 54/357 (15%), Positives = 104/357 (29%), Gaps = 62/357 (17%)
Query: 78 LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY+E+ + + + S GV GD +Y PE II + A + + ++
Sbjct: 91 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150
Query: 137 GANAVEFIINHAEVSIAFVQEN-----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
+N++ IN + + + K+ + + +
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
W + P + ++YTSG+TG PKGV + + L
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLM 305
+ T +ED +F+ + I + + GC+ + G +
Sbjct: 271 TMRYTFDT----HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 326
Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
+ I E K T F P + +
Sbjct: 327 DIIDEHKVTQFYVAPTALRLL-----------------------------------KRAG 351
Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419
+++ +R + S P+ V E+ G P+ Y E
Sbjct: 352 DSYIENHSLKSLR--------CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 400
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 127 bits (319), Expect = 1e-32
Identities = 64/314 (20%), Positives = 106/314 (33%), Gaps = 34/314 (10%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
W F +A ++ VS G TY EVY A R +R+ GV GDR
Sbjct: 14 WDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
G N + A A L + +I+NHAE + N +P + +
Sbjct: 69 ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
+V + + + + + + + +
Sbjct: 129 IRGELKTVQHFVVMDEK--------------APEGYLAYEEALGEEADPVRVPERAACGM 174
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
YT+GTTG PKGVV +++A+V L+ + SE+D +P+ H+ +
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCLPY 231
Query: 286 HCIHKGCSIGF--WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK---------- 333
G R D L+E T +GVP V+ + + +
Sbjct: 232 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRL 291
Query: 334 ISSGGALSKKLFEF 347
+ G A + L
Sbjct: 292 VVGGSAAPRSLIAR 305
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 108 bits (271), Expect = 2e-26
Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 10/253 (3%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 48 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 107
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +N ++ ++ FV + + IL+ + + K I+ + +
Sbjct: 108 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF--- 164
Query: 198 CFSWEEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
L G + + P+ + I+ IM +SG+TG PKGV L ++
Sbjct: 165 ---VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 221
Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPT 314
+ + + I + +R + + +Q+ K
Sbjct: 222 PIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQ 280
Query: 315 MFSGVPRVYDRIY 327
VP ++
Sbjct: 281 SALLVPTLFSFFA 293
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 97.3 bits (241), Expect = 2e-22
Identities = 55/308 (17%), Positives = 107/308 (34%), Gaps = 47/308 (15%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
Q F + + PNN + V + + LTY E+ A + +G+ G
Sbjct: 27 QLFEEQVSKRPNNVAI----VCENEQ-----LTYHELNVKANQLARIFIEKGIGKDTLVG 77
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
I + I + A YVP+ +++I++ ++ + Q++ + I
Sbjct: 78 IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI--- 134
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
+ G E+ +++ P K T+++ ++
Sbjct: 135 ----------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVI 172
Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
YTSGTTG PKG +L ++ I ++F +E+D F ++
Sbjct: 173 YTSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 227
Query: 287 CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRI----YTGISNKISSGG 338
+ G S+ D + I + + T+ + P + I I++G
Sbjct: 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGS 287
Query: 339 ALSKKLFE 346
A S L
Sbjct: 288 ATSPSLVN 295
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 92.0 bits (227), Expect = 1e-20
Identities = 36/265 (13%), Positives = 79/265 (29%), Gaps = 21/265 (7%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
D A + + + +Y+E+ A R + + G+ DR
Sbjct: 28 GDLLRDRAAKYGDRIAI----TCGNTH-----WSYRELDTRADRLAAGFQKLGIQQKDRV 78
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
+ N E+ + A V + ++ + + AE + + +
Sbjct: 79 VVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR 138
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
L R + + + + L T +LP K ++++ +
Sbjct: 139 SLARQVQSKLPTL-----------KNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
+ G+TG K + T+ + + SV+ ++ V PL+ +
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247
Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQ 309
S D L+E +
Sbjct: 248 YAGGRVVLSPSPSPDDAFPLIEREK 272
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 91.6 bits (226), Expect = 1e-20
Identities = 44/319 (13%), Positives = 95/319 (29%), Gaps = 37/319 (11%)
Query: 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
+++ + +A R P++ L + G LT+ E+ + + + G+ P
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL--AVPARGL-----RLTHAELRARVEAVAARLHADGLRP 53
Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
R + N + +IA+ A + L L + + +I E++ A + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
+ + + + I V + E P ++
Sbjct: 112 QVADAIFQSGSGARIIFLGDLVRDGEPYSYGP-----------------PIEDPQREPAQ 154
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-----------VDQMFVVTGKVCSEEDTYF 270
+ I YTSGTTG PK ++ +A + VL + + +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGI 330
LA ++ + V L L + +
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 331 SNKISSGGALSKKLFEFAY 349
+ +G + + E +
Sbjct: 275 RHVTFAGATMPDAVLETVH 293
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 419 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 87.96 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 86.37 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 84.88 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 81.98 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 81.6 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=8.8e-44 Score=364.00 Aligned_cols=325 Identities=14% Similarity=0.208 Sum_probs=256.1
Q ss_pred CCCCCHH-HHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 40 AGLESPW-QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 40 ~~~~tl~-~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
....|+. .+|+++++.+||++|+++. ..+.++.+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 68 ~~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~ 144 (643)
T d1pg4a_ 68 DGTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVA 144 (643)
T ss_dssp TCEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHH
T ss_pred CChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHH
Confidence 3344454 4677888999999999987 55566778999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh---------hhHhhcC-ccCCCCccEEEEecCCChhhH
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCL-PRCCLYLKTIVSFANVSSSQK 188 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 188 (419)
+|||+++|++++|+++.++.+++.++++.++++++|+++... ......+ ......+..++++........
T Consensus 145 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 224 (643)
T d1pg4a_ 145 MLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 224 (643)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC
T ss_pred HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc
Confidence 999999999999999999999999999999999999986421 1111111 122345667777665432110
Q ss_pred HHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCc
Q 014742 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEED 267 (419)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d 267 (419)
. .......+.+...............++++++|+|||||||.||||++||++++..... ....+ ++.++|
T Consensus 225 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d 295 (643)
T d1pg4a_ 225 W----QEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGD 295 (643)
T ss_dssp C----CBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTC
T ss_pred c----ccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCC
Confidence 0 0001233444444444444455667899999999999999999999999997755444 33344 788999
Q ss_pred EEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchH
Q 014742 268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341 (419)
Q Consensus 268 ~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~ 341 (419)
++++.+|++|.+++.. ++.+|+.|+++++.++ ++..+++.|+++++|+++++|++++.|++..
T Consensus 296 ~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~----------- 364 (643)
T d1pg4a_ 296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEG----------- 364 (643)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTG-----------
T ss_pred EEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCc-----------
Confidence 9999999999999986 7788999999999753 7899999999999999999999999986521
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCC
Q 014742 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMV 418 (419)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~t 418 (419)
....+..++ ++||.+++||+++++++++++.+.+| +++++.||+|
T Consensus 365 ------------------------~~~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~T 412 (643)
T d1pg4a_ 365 ------------------------DKAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 412 (643)
T ss_dssp ------------------------GGGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred ------------------------chhccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechh
Confidence 111122223 38999999999999999999999884 7799999999
Q ss_pred C
Q 014742 419 E 419 (419)
Q Consensus 419 E 419 (419)
|
T Consensus 413 E 413 (643)
T d1pg4a_ 413 E 413 (643)
T ss_dssp G
T ss_pred h
Confidence 8
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-41 Score=348.41 Aligned_cols=323 Identities=18% Similarity=0.236 Sum_probs=250.9
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 44 tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
....+|+++++.+||++|+++. +.+.+..+++||.||.++++++|++|+ ++|+++||+|+++++|+++++++++||
T Consensus 60 ~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~ 136 (640)
T d1ry2a_ 60 ACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 136 (640)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHh
Confidence 3477889999999999999986 555667789999999999999999997 679999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh--------hHhhcCccCCCCccEEEEecCCChhhHHHHHHh
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP--------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (419)
+++|++++|+++.++.+++.++++.+++++++++..... ............+............... ..
T Consensus 137 ~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 213 (640)
T d1ry2a_ 137 SRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA---FH 213 (640)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC---CC
T ss_pred ccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccc---cc
Confidence 999999999999999999999999999999999875421 1111112222344444444332211000 00
Q ss_pred CceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecC
Q 014742 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (419)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (419)
......+.................++++++|+|||||||.||||+++|.+++.......... ..+.++|++++.+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~----~~~~~~d~~l~~~p 289 (640)
T d1ry2a_ 214 APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTAGD 289 (640)
T ss_dssp SSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH----SCCCSSCEEEECSC
T ss_pred ccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh----cCCCcccceeeccc
Confidence 01122233333333334444556688999999999999999999999999887655543322 27888999999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHH
Q 014742 275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA 348 (419)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
++|.+|+.. ++.+|..|+++++.+. ++..+++.|+++++|++.++|++++.|.+..
T Consensus 290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 351 (640)
T d1ry2a_ 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG------------------ 351 (640)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC------------------
T ss_pred hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc------------------
Confidence 999999876 7788999999998754 7899999999999999999999999875410
Q ss_pred HHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
....+..++ ++||.+++||+++++++.+++++.+| .++++.||+||
T Consensus 352 -----------------~~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te 400 (640)
T d1ry2a_ 352 -----------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 400 (640)
T ss_dssp -----------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred -----------------ccccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccc
Confidence 111122223 38999999999999999999999985 56999999998
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5e-40 Score=329.55 Aligned_cols=312 Identities=22% Similarity=0.298 Sum_probs=255.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
+...||.++|+++++++||++|+++. + +++.+++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 45668999999999999999999976 3 455678999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
|||+++|++++|+++.++.+++.++++.+++++++++............ ....+...+......... ..
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~ 151 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPEG----------YL 151 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCTT----------CE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhh-cccccceeEEeecccccc----------cc
Confidence 9999999999999999999999999999999999999988776655443 335566666655443211 11
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
..... ...........++++++++|||||||.||||+++|.+++..+....... .......|++++.+|++|.+
T Consensus 152 ~~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~ 225 (534)
T d1v25a_ 152 AYEEA---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVN 225 (534)
T ss_dssp EHHHH---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHH
T ss_pred ccccc---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhc
Confidence 11111 1122334455678999999999999999999999999987664433322 23667889999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
++...+..+..|+++++... ++..+...+.++++|++.++|.++..+++......
T Consensus 226 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~----------------------- 282 (534)
T d1v25a_ 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------- 282 (534)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------
T ss_pred cccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc-----------------------
Confidence 99987778778887777654 99999999999999999999999999876433211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.++ ++||.+++||++++++..+++++ ++.+++++||+||
T Consensus 283 --------------~~~--------~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te 321 (534)
T d1v25a_ 283 --------------HRL--------KTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTE 321 (534)
T ss_dssp --------------CCC--------SSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGG
T ss_pred --------------ccc--------cceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccc
Confidence 111 48999999999999999999987 5999999999998
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=4.5e-39 Score=322.68 Aligned_cols=320 Identities=19% Similarity=0.266 Sum_probs=253.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhC---CCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc
Q 014742 36 LESPAGLESPWQFFCDSAKRI---PNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (419)
Q Consensus 36 ~~~~~~~~tl~~~l~~~a~~~---pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~ 112 (419)
|.-|.+..|+.+.|.+.++++ |+++|+.+. +.+ +++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus 10 p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns 82 (541)
T d1lcia_ 10 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 82 (541)
T ss_dssp CSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCC
Confidence 455666789999999999988 666666643 222 5799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHH
Q 014742 113 PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192 (419)
Q Consensus 113 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+... ..+..+.+++++.....
T Consensus 83 ~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------ 155 (541)
T d1lcia_ 83 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY------ 155 (541)
T ss_dssp SSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB------
T ss_pred HHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc-cccccceeeeecCCccc------
Confidence 99999999999999999999999999999999999999999999988877766543 33667777777654321
Q ss_pred HhCceeeeHHHHHhcC-------CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCC
Q 014742 193 ELGVSCFSWEEFLQLG-------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 265 (419)
Q Consensus 193 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 265 (419)
.....+.++.... ....+.....++++++|+|||||||.||||+++|++++.........+ ......+
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~~~ 230 (541)
T d1lcia_ 156 ---QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 230 (541)
T ss_dssp ---TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred ---cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhc--ccccccc
Confidence 1233444443322 112233444578899999999999999999999999988766654433 1235677
Q ss_pred CcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 266 EDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
++++++.+|++|.+++...+..+..|+.+++... +....+..+.++++|.+.++|.++..+++..
T Consensus 231 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~-------------- 296 (541)
T d1lcia_ 231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-------------- 296 (541)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCS--------------
T ss_pred cccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccc--------------
Confidence 8999999999999999888888888888888776 9999999999999999999999999886521
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCC-ceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE 419 (419)
.....++ +++|.+++||++++++..+++.+.++. .++++||+||
T Consensus 297 -----------------------~~~~~~~--------~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE 341 (541)
T d1lcia_ 297 -----------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 341 (541)
T ss_dssp -----------------------CGGGSCC--------TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGG
T ss_pred -----------------------ccccccc--------ccceEEEecccccccccccccccccCCceeeecCCccc
Confidence 1111112 389999999999999999999998865 6999999998
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.5e-36 Score=300.58 Aligned_cols=301 Identities=18% Similarity=0.209 Sum_probs=244.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+|+.++|+++|+.+||++|+.+. ++. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 479999999999999999999975 332 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++........ .... .....++.+.
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~~~-------------------- 130 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIFLG-------------------- 130 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEEHH--------------------
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-ccccccccch--------------------
Confidence 9999999999999999999999999999999999876432211 1111 1223333322
Q ss_pred HHHHhcC-----CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 202 EEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 202 ~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
++.... ..........++++++++|||||||.||+|.++|.++...+......+ .......+++++.+|++
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 131 -DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp -HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred -hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 222111 122333456788999999999999999999999999999888866544 23455678999999998
Q ss_pred HHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 277 h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
|.++... .+.+...++.+++.+. ++..+...+.+++++.+..+|..+..+...........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 269 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL----------------- 269 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTC-----------------
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccc-----------------
Confidence 8888876 6677777888887776 99999999999999999999999998765433221110
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ ++||.+++||++++++...+++..++..+.+.||+||
T Consensus 270 ------------------~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e 308 (503)
T d3cw9a1 270 ------------------KL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE 308 (503)
T ss_dssp ------------------CC--------TTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETT
T ss_pred ------------------cc--------cceEEEEeccccccccccccccccccccccccccccc
Confidence 11 3899999999999999999999999999999999997
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5e-37 Score=307.26 Aligned_cols=304 Identities=17% Similarity=0.182 Sum_probs=244.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..|+.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA 94 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 369999999999999999999974 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhh----cCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS----CLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++|+++.++.+++.++++.++++++++++........ ........+...+.......
T Consensus 95 ~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (536)
T d1mdba_ 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------
Confidence 99999999999999999999999999999999998643221111 11111122222332222111
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
...++++ .......++..++++++|+|||||||.||||++||.++..++......+ ...++|++++..|++|
T Consensus 163 ~~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 163 FLPLEDL---HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (536)
T ss_dssp SEEGGGC---CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ccchhhc---ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence 2222222 1223344456789999999999999999999999999999999987777 8899999999999999
Q ss_pred HHHHHH-HH-HHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII-ET-HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~-~l-~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++ ..+..|.+++..+. ++..++..+.+++++.+..+|..+..+.........
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 295 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD------------------- 295 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC-------------------
T ss_pred ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc-------------------
Confidence 999874 44 44555677777665 999999999999999999999999887653221100
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ +++|.+++||+++++...+++.+.++...+..||.+|
T Consensus 296 ------------------~~--------~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (536)
T d1mdba_ 296 ------------------DL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE 334 (536)
T ss_dssp ------------------CC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTT
T ss_pred ------------------cc--------CcceeEEEeccccccccccchhhccCceeeecccccc
Confidence 01 3899999999999999999999999999999998876
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2e-37 Score=308.88 Aligned_cols=287 Identities=17% Similarity=0.221 Sum_probs=235.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..|+.++|+++|+++||++|+++. + +++||.||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 21 ~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l 91 (514)
T d1amua_ 21 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 91 (514)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 4889999999999999999999974 3 689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.++++++|++....+.+...... . .........
T Consensus 92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~-~~~~~~~~~---------------- 150 (514)
T d1amua_ 92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----G-QVEIFEEDT---------------- 150 (514)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----S-EEEECCCST----------------
T ss_pred HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc----c-ccccccccc----------------
Confidence 9999999999999999999999999999999999998877665443221 1 111111110
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
...........+..++++++|+|||||||.||+|.+||.++...+......+ .....+++++.+|++|.++
T Consensus 151 ----~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 221 (514)
T d1amua_ 151 ----IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS 221 (514)
T ss_dssp ----TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred ----ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccccccc
Confidence 0011112223345678999999999999999999999999999999977766 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.++..|+++++... +....++.+..+.++.+..+|........
T Consensus 222 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 273 (514)
T d1amua_ 222 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---------------------------- 273 (514)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----------------------------
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc----------------------------
Confidence 9988889999999998753 77888899999999999999876543210
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. ++ .++|.+++||+++++++.+++.+ ++.+++.||+||
T Consensus 274 ------------~---~~--------~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE 311 (514)
T d1amua_ 274 ------------E---RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTE 311 (514)
T ss_dssp ------------T---TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGG
T ss_pred ------------c---cc--------ccccEEEEecccCCHHHhhhhcc--ceeEEEeecccc
Confidence 0 11 38999999999999999988877 689999999998
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=87.96 E-value=0.81 Score=42.38 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=76.8
Q ss_pred EEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--CHH
Q 014742 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVR 302 (419)
Q Consensus 225 i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~ 302 (419)
+.++.+.++ ..+|++.+...+..+...+.. .++.++|++...++-.-. ....+++++..|+..+..+. ..+
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~--~Gi~~Gd~Vai~~~ns~e-~~v~~lA~~~~G~i~vpl~~~~~~~ 109 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKR--YGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNER 109 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCSS-THHHHHHHHHHTCEEEECCTTCCHH
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHH--cCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCeEEEecCCCCCHH
Confidence 334444444 468999999999998887743 378899999888776432 24457789999998888865 889
Q ss_pred HHHHHhhhhcCeEEEecchHHHHHHHHH
Q 014742 303 YLMEDIQELKPTMFSGVPRVYDRIYTGI 330 (419)
Q Consensus 303 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 330 (419)
.+...++..++.++++....+..+.+..
T Consensus 110 ~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 137 (541)
T d1lcia_ 110 ELLNSMNISQPTVVFVSKKGLQKILNVQ 137 (541)
T ss_dssp HHHHHHHHHCCSEEEECGGGHHHHHHHH
T ss_pred HHHHHHHhccceEEeeeccccccchhcc
Confidence 9999999999999999999888876643
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=86.37 E-value=4.4 Score=37.05 Aligned_cols=103 Identities=5% Similarity=-0.159 Sum_probs=80.7
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.+|.++++...+|. .-.+|+..+...+..+...+... +++++|++...++-... ....+++++..|+..+..
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 95 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRAL--GVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTA 95 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHC--CcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEec
Confidence 46777877666542 24689999999999988877443 68889999888886533 234588999999999888
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+.........+..
T Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 96 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 65 88999999999999999999888877643
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=84.88 E-value=4.4 Score=36.81 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=77.9
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.||.+|++.- +-.+|+..+...+..+...+.. .+++++|++...++-...+ +...++++..|+..+..
T Consensus 36 ~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l 103 (514)
T d1amua_ 36 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPI 103 (514)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHH--cCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEe
Confidence 4778887641 1369999999999998886643 3788999998888776443 44578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (419)
+. ..+.+...++..++..+++.+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 135 (514)
T d1amua_ 104 DIEYPKERIQYILDDSQARMLLTQKHLVHLIH 135 (514)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT
T ss_pred CCCCCHHHHHHHHhccCCcEEEEehhhhhhhh
Confidence 65 8899999999999999999988776653
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=81.98 E-value=5.3 Score=37.84 Aligned_cols=98 Identities=9% Similarity=0.099 Sum_probs=75.9
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.+|.+|+|.... .+|. ...+|++.+...+..+...+.. .++.++|++...+|-..- ....+++++..|+..+..
T Consensus 85 ~~d~~Ali~~~~-~~~~--~~~~TY~eL~~~v~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e-~iv~~lA~~~~Gav~v~l 158 (643)
T d1pg4a_ 85 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLLD--LGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVI 158 (643)
T ss_dssp HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEec-CCCC--ceEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEecccchH-HHHHHHHHHHhCeEEEec
Confidence 367788776533 3333 2478999999999998887754 378899999999987544 344578999999999887
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecch
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPR 321 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~ 321 (419)
.. .++.+...+...++.++++.+.
T Consensus 159 ~~~~~~~~l~~~l~~~~~~~li~~~~ 184 (643)
T d1pg4a_ 159 FGGFSPEAVAGCIIDSSSRLVITADE 184 (643)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcch
Confidence 65 8999999999999999987654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=81.60 E-value=3.7 Score=36.86 Aligned_cols=94 Identities=14% Similarity=-0.020 Sum_probs=72.7
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.+|.++++.-.+| ..+|++.+...+..+...+... ++.++|++...++-.-. .+..+++++..|+..+..
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~--Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpi 84 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALL 84 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHc--CcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEEe
Confidence 4677787665444 3589999999999888876443 67889999888775432 334578999999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecch
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPR 321 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~ 321 (419)
+. .++.+...+++.++..++....
T Consensus 85 ~~~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 85 NPRLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEeecc
Confidence 65 8889999999999999887665
|