Citrus Sinensis ID: 014749

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHHG
cccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccEEccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHEEEEEEccEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccEEEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHccc
ccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccEEHEEEEEcccccccccccccEEEEEccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MGGGFRVLHLvrpflpflpevqsadrkipfrEKVIYTVISLFIFLVcsqlplygihsttgadpfYWMRVILASNrgtvmelgiTPIVTSGLVMQLLAGSkiievdnnvrEDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLqkgyglgsGISLFIATNICESIIwkafspttinsgrgaefEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVlpvrsknargqqgaypiklfytsnmPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGkwkeseysghsipvgglayyvtapasladmaanPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHHG
MGGGFRVLHlvrpflpflpevqsadrkipFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPvrsknargqqGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHHG
MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHHG
****FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRAL***
***GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVD***REDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALH**
MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHHG
**GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHH*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
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MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCYFWSLFAGIRALHHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
Q54XK2475 Protein transport protein yes no 0.937 0.827 0.707 1e-169
P38379494 Protein transport protein N/A no 0.937 0.795 0.686 1e-156
Q90ZM2476 Protein transport protein yes no 0.930 0.819 0.681 1e-154
Q7T278476 Protein transport protein N/A no 0.935 0.823 0.681 1e-154
Q7T277476 Protein transport protein N/A no 0.935 0.823 0.681 1e-154
Q8AY32476 Protein transport protein N/A no 0.935 0.823 0.678 1e-154
Q8AY36476 Protein transport protein N/A no 0.935 0.823 0.681 1e-154
Q8AY35476 Protein transport protein N/A no 0.935 0.823 0.681 1e-154
Q9JLR1476 Protein transport protein yes no 0.935 0.823 0.681 1e-154
Q9H9S3476 Protein transport protein yes no 0.935 0.823 0.681 1e-154
>sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1 Back     alignment and function desciption
 Score =  594 bits (1531), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/393 (70%), Positives = 333/393 (84%)

Query: 4   GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
           GFR L +V+PF   +PEV   DRKIPFREKV++T I LFIFLVCSQ+PLYGI ST  +DP
Sbjct: 2   GFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDP 61

Query: 64  FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123
           FYW +VI+ASNRGT+MELGI+PIVTSG+VMQLLAG+K+IE+D +V+ DR L + AQKL G
Sbjct: 62  FYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFG 121

Query: 124 ILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGIS 183
           +LI +G+ VAY+ SG YG  + LG GN  LI+LQL FAGIIV+ LDELLQKGYG+GSGIS
Sbjct: 122 MLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGIS 181

Query: 184 LFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
           LFIATNICE+I+WK FSPTT++ G+G EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLP
Sbjct: 182 LFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLP 241

Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSN 303
           NITNLLATVL+F++V+YFQGF+V LPV+S    GQQG YPIKLFYTSN+PIILQSALVSN
Sbjct: 242 NITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSN 301

Query: 304 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHAL 363
           LYFISQLLYR++  N  VNL G W+ SEYS   IPV GL YY+++P +++ + A+PFHAL
Sbjct: 302 LYFISQLLYRRFPDNILVNLFGAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHAL 361

Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
           FY+ FMLT+CALFSK WIEVSGSSARDVAKQLK
Sbjct: 362 FYITFMLTSCALFSKVWIEVSGSSARDVAKQLK 394
Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Dictyostelium discoideum (taxid: 44689)
>sp|P38379|SC61A_PYRSA Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1 Back     alignment and function description
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3 Back     alignment and function description
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3 Back     alignment and function description
>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
255562508476 preprotein translocase secy subunit, put 0.945 0.831 0.944 0.0
225461724476 PREDICTED: protein transport protein Sec 0.945 0.831 0.937 0.0
356543211476 PREDICTED: protein transport protein Sec 0.945 0.831 0.931 0.0
356544102476 PREDICTED: protein transport protein Sec 0.945 0.831 0.929 0.0
357516315476 Protein transport protein Sec61 subunit 0.945 0.831 0.934 0.0
224114762476 Sec61 transport protein [Populus trichoc 0.945 0.831 0.931 0.0
6581004476 putative integral membrane protein [Phas 0.945 0.831 0.931 0.0
255645765476 unknown [Glycine max] 0.945 0.831 0.929 0.0
15226261475 protein transport protein SEC61 subunit 0.945 0.833 0.931 0.0
359807371476 uncharacterized protein LOC100798372 [Gl 0.945 0.831 0.926 0.0
>gi|255562508|ref|XP_002522260.1| preprotein translocase secy subunit, putative [Ricinus communis] gi|223538513|gb|EEF40118.1| preprotein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/397 (94%), Positives = 389/397 (97%), Gaps = 1/397 (0%)

Query: 1   MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           MGGGFRVLHLV+PFL  LPEVQ+ADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct: 1   MGGGFRVLHLVKPFLSVLPEVQNADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query: 121 LLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180
           LLGILIA+GEAVAYV+SGMYGSVSQLGAGNAILII+QLCFAGIIVICLDELLQKGYGLGS
Sbjct: 121 LLGILIAVGEAVAYVLSGMYGSVSQLGAGNAILIIIQLCFAGIIVICLDELLQKGYGLGS 180

Query: 181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ 240
           GISLFIATNICE+IIWKAFSPTTINSGRGAEFEGAVIALFHLLIT+ +KV ALREAFYRQ
Sbjct: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQ 240

Query: 241 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL 300
           NLPN+TNLLATVL+FLIV+YFQGF+VVLPVRSKNARGQQG+YPIKLFYTSNMPIILQSAL
Sbjct: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query: 301 VSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHS-IPVGGLAYYVTAPASLADMAANP 359
           VSNLYFISQLLYRKYSGNF VNLLGKWKESEYSG   IPVGGLAYYVTAPASLADMAANP
Sbjct: 301 VSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSGGQFIPVGGLAYYVTAPASLADMAANP 360

Query: 360 FHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
           FHALFYLVFML+ACALFSKTWIEVSGSSARDVAKQLK
Sbjct: 361 FHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLK 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461724|ref|XP_002285514.1| PREDICTED: protein transport protein Sec61 subunit alpha [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543211|ref|XP_003540056.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356544102|ref|XP_003540494.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|357516315|ref|XP_003628446.1| Protein transport protein Sec61 subunit alpha [Medicago truncatula] gi|355522468|gb|AET02922.1| Protein transport protein Sec61 subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|224114762|ref|XP_002316850.1| Sec61 transport protein [Populus trichocarpa] gi|118487035|gb|ABK95348.1| unknown [Populus trichocarpa] gi|222859915|gb|EEE97462.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|6581004|gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|255645765|gb|ACU23375.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15226261|ref|NP_180972.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] gi|79324249|ref|NP_001031476.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] gi|297823211|ref|XP_002879488.1| hypothetical protein ARALYDRAFT_482367 [Arabidopsis lyrata subsp. lyrata] gi|13605799|gb|AAK32885.1|AF367298_1 At2g34250/F13P17.9 [Arabidopsis thaliana] gi|3337356|gb|AAC27401.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis thaliana] gi|21593809|gb|AAM65776.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis thaliana] gi|23308213|gb|AAN18076.1| At2g34250/F13P17.9 [Arabidopsis thaliana] gi|222423809|dbj|BAH19870.1| AT2G34250 [Arabidopsis thaliana] gi|297325327|gb|EFH55747.1| hypothetical protein ARALYDRAFT_482367 [Arabidopsis lyrata subsp. lyrata] gi|330253849|gb|AEC08943.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] gi|330253850|gb|AEC08944.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359807371|ref|NP_001241126.1| uncharacterized protein LOC100798372 [Glycine max] gi|255637958|gb|ACU19295.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
TAIR|locus:2040909475 AT2G34250 "AT2G34250" [Arabido 0.945 0.833 0.931 1.5e-195
TAIR|locus:2029894475 AT1G29310 "AT1G29310" [Arabido 0.945 0.833 0.934 1.9e-195
TAIR|locus:2037483475 AT1G78720 "AT1G78720" [Arabido 0.945 0.833 0.878 6.2e-188
DICTYBASE|DDB_G0278885475 sec61a "protein transport prot 0.937 0.827 0.707 1.5e-152
ZFIN|ZDB-GENE-020418-2476 sec61a1 "Sec61 alpha 1 subunit 0.930 0.819 0.681 1.7e-144
UNIPROTKB|Q7T277476 sec61a "Protein transport prot 0.935 0.823 0.681 2.2e-144
UNIPROTKB|Q7T278476 sec61a "Protein transport prot 0.935 0.823 0.681 2.2e-144
UNIPROTKB|Q2KHX4476 SEC61A2 "Protein transport pro 0.935 0.823 0.681 2.8e-144
UNIPROTKB|Q8TC24418 SEC61A2 "Protein transport pro 0.935 0.937 0.681 2.8e-144
UNIPROTKB|Q9H9S3476 SEC61A2 "Protein transport pro 0.935 0.823 0.681 2.8e-144
TAIR|locus:2040909 AT2G34250 "AT2G34250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1894 (671.8 bits), Expect = 1.5e-195, P = 1.5e-195
 Identities = 369/396 (93%), Positives = 385/396 (97%)

Query:     1 MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
             MGGGFRVLHLVRPFL FLPEVQSADRK+PFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct:     1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
             ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query:   121 LLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180
             LLGILIAIGEAVAYV+SGMYG V QLG GNAILIILQL FAGIIVICLDELLQKGYGLGS
Sbjct:   121 LLGILIAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGS 180

Query:   181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ 240
             GISLFIATNICESIIWKAFSPTTIN+GRGAEFEGAVIALFH+LITK NKV ALR+AFYRQ
Sbjct:   181 GISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQ 240

Query:   241 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL 300
             NLPN+TNLLATVL+FLIV+YFQGF+VVLPVRSKNARGQQG+YPIKLFYTSNMPIILQSAL
Sbjct:   241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query:   301 VSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPF 360
             VSNLYFISQLLYRK+SGNFFVNLLG+WKESEYSG SIPV GLAY +TAPAS +DMAA+PF
Sbjct:   301 VSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSGQSIPVSGLAYLITAPASFSDMAAHPF 360

Query:   361 HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
             HALFY+VFMLTACALFSKTWIEVSGSSARDVAKQLK
Sbjct:   361 HALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
GO:0009306 "protein secretion" evidence=ISS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
TAIR|locus:2029894 AT1G29310 "AT1G29310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037483 AT1G78720 "AT1G78720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278885 sec61a "protein transport protein SEC61 alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020418-2 sec61a1 "Sec61 alpha 1 subunit (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T277 sec61a "Protein transport protein Sec61 subunit alpha" [Dissostichus mawsoni (taxid:36200)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T278 sec61a "Protein transport protein Sec61 subunit alpha" [Harpagifer antarcticus (taxid:43256)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX4 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC24 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9S3 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96TW8SC61A_HANANNo assigned EC number0.58670.93550.8183N/Ano
P78979SC61A_YARLINo assigned EC number0.56090.94030.8365yesno
Q870W0SC61A_NEUCRNo assigned EC number0.62240.93550.8235N/Ano
Q90YL4S61A2_DANRENo assigned EC number0.67170.93070.8193yesno
Q6FRY3SC61A_CANGANo assigned EC number0.55610.93310.8162yesno
Q7T278SC61A_HARANNo assigned EC number0.68100.93550.8235N/Ano
Q98SN9S61A1_ONCMYNo assigned EC number0.67590.93550.8235N/Ano
Q98SN8S61A2_ONCMYNo assigned EC number0.68100.93550.8235N/Ano
Q8AY34SC61A_HEMAMNo assigned EC number0.67340.93550.8235N/Ano
Q8AY32SC61A_GADOCNo assigned EC number0.67840.93550.8235N/Ano
Q8AY33SC61A_BORSANo assigned EC number0.67080.93550.8235N/Ano
Q8AY31SC61A_BOVVANo assigned EC number0.67840.93550.8235N/Ano
Q90ZM2S61A1_DANRENo assigned EC number0.68190.93070.8193yesno
P32915SC61A_YEASTNo assigned EC number0.53820.93310.8145yesno
Q2KHX4S61A2_BOVINNo assigned EC number0.68100.93550.8235yesno
Q7T277SC61A_DISMANo assigned EC number0.68100.93550.8235N/Ano
Q5NVM7S61A2_PONABNo assigned EC number0.67840.93550.8235yesno
Q8AY36SC61A_PAGBONo assigned EC number0.68100.93550.8235N/Ano
P79088SC61A_SCHPONo assigned EC number0.54770.91640.8016yesno
Q9H9S3S61A2_HUMANNo assigned EC number0.68100.93550.8235yesno
Q25147SC61A_HALRONo assigned EC number0.66580.93310.8231N/Ano
Q6BN08SC61A_DEBHANo assigned EC number0.57250.93790.8204yesno
Q8AY35SC61A_NOTANNo assigned EC number0.68100.93550.8235N/Ano
Q54XK2SC61A_DICDINo assigned EC number0.70730.93790.8273yesno
Q9P8E3SC61A_CANALNo assigned EC number0.57500.93790.8204N/Ano
Q6CPY9SC61A_KLULANo assigned EC number0.54450.93310.8145yesno
Q9JLR1S61A2_MOUSENo assigned EC number0.68100.93550.8235yesno
Q752H7SC61A_ASHGONo assigned EC number0.55070.93070.8125yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027847001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
•  •    0.812
GSVIVG00037925001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (205 aa)
   • •  0.800
GSVIVG00037758001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (688 aa)
     •  0.800
GSVIVG00036059001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (253 aa)
     •  0.800
GSVIVG00024600001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (371 aa)
     •  0.800
GSVIVG00016972001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)
     •  0.800
GSVIVG00034206001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)
•  •    0.752
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
•  •• • 0.672
GSVIVG00037864001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)
    ••• 0.671
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
•       0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
PTZ00219474 PTZ00219, PTZ00219, Sec61 alpha subunit; Provision 0.0
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 1e-106
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 4e-76
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 2e-67
pfam00344340 pfam00344, SecY, SecY translocase 3e-64
pfam1055935 pfam10559, Plug_translocon, Plug domain of Sec61p 1e-13
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 0.004
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional Back     alignment and domain information 
 Score =  714 bits (1845), Expect = 0.0
 Identities = 289/396 (72%), Positives = 347/396 (87%)

Query: 1   MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           M    R L+L+RP +  LPEV   DRKIPF+EKV++T I+LF+FLVC Q+PLYGI S++ 
Sbjct: 1   MAKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSS 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           +DPFYWMRVILASNRGT+MELGI+PIVTS +VMQLLAGSKII+VD N +EDRAL  GAQK
Sbjct: 61  SDPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQK 120

Query: 121 LLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180
           LLG+LI +GEAVAYV SGMYG +S++GAGNAILIILQL FAGI+VI LDELLQKGYGLGS
Sbjct: 121 LLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGS 180

Query: 181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ 240
           GISLFIATNICE+IIWKAFSPTTIN+GRG EFEGA+IALFHLL T+ +K+ AL+EAFYR 
Sbjct: 181 GISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRP 240

Query: 241 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL 300
           +LPN+TNLLATVLVFL+V+YFQGF+V LP++S+  RGQQ +YPIKLFYTSN+PIILQ+AL
Sbjct: 241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTAL 300

Query: 301 VSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPF 360
           VSNLYF SQ+LYR++  NF +NLLG+W+E EYSG S+PVGGLAYY++ P S +D+  +P 
Sbjct: 301 VSNLYFFSQILYRRFKNNFLINLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPI 360

Query: 361 HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
           H + Y+VF+L +CALFSKTWIEVSGSSA+DVAKQLK
Sbjct: 361 HTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLK 396

Length = 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p Back     alignment and domain information
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 97.6
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.8e-90  Score=717.22  Aligned_cols=403  Identities=72%  Similarity=1.210  Sum_probs=365.2

Q ss_pred             CccchHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHHHHHHhhhccccccccc
Q 014749            3 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELG   82 (419)
Q Consensus         3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~Slf~LG   82 (419)
                      -|||++|.+||+++++|||++|+|+.++|+|++||++++++||+|++||+||+|.+...|++.+++++|+.+++|+|+||
T Consensus         3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~LG   82 (474)
T PTZ00219          3 KMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMELG   82 (474)
T ss_pred             CcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHhc
Confidence            36999999999999999999999999999999999999999999999999999998878999999999999999999999


Q ss_pred             chHHHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHH
Q 014749           83 ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAG  162 (419)
Q Consensus        83 I~PyItAsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~  162 (419)
                      |+|||||||+||||++.++.+.|++.++||||+|++||++|+++|++||.+++..+.++...+.+.....++++||++|+
T Consensus        83 I~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~  162 (474)
T PTZ00219         83 ISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAG  162 (474)
T ss_pred             cHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHH
Confidence            99999999999999888999999999999999999999999999999999998643334323334446788999999999


Q ss_pred             HHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCC
Q 014749          163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL  242 (419)
Q Consensus       163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~l  242 (419)
                      ++++||||++|||||+|||+||+|++||+++++|+.|+|.....+.+.+++|+++++++.+.+++++.+.+.++++|+++
T Consensus       163 ~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l  242 (474)
T PTZ00219        163 IVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHL  242 (474)
T ss_pred             HHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccc
Confidence            99999999999999999999999999999999999999987766555678999988887665677788899999999999


Q ss_pred             chHHHHHHHHHHHHHhhheeceEEEEeeeeccCCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 014749          243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN  322 (419)
Q Consensus       243 p~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~  322 (419)
                      |+++.+++++++++++||+|++|||||++|+|.+|+++++|+|+||+|+||+|||++++++|+++++++++.++++..++
T Consensus       243 ~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~  322 (474)
T PTZ00219        243 PNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLIN  322 (474)
T ss_pred             ccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence            99888889999999999999999999999999889889999999999999999999999999999999877655554445


Q ss_pred             ccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCcee
Q 014749          323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSL  402 (419)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I  402 (419)
                      +++.|.++.+.|+++|++|+++|++||+++.+.+.+|.|.++|+++++++|++|+++|++++|+||||+||||||||++|
T Consensus       323 ~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~I  402 (474)
T PTZ00219        323 LLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGM  402 (474)
T ss_pred             cccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCc
Confidence            56667532112566799999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 014749          403 LCY  405 (419)
Q Consensus       403 ~~~  405 (419)
                      ||+
T Consensus       403 pG~  405 (474)
T PTZ00219        403 VGY  405 (474)
T ss_pred             cCc
Confidence            996

>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
2wwb_A476 Cryo-Em Structure Of The Mammalian Sec61 Complex Bo 1e-152
3mp7_A482 Lateral Opening Of A Translocon Upon Entry Of Prote 2e-59
3dkn_A430 Sec61 In The Canine Ribosome-Channel Complex From T 2e-56
1rhz_A436 The Structure Of A Protein Conducting Channel Lengt 2e-56
1rh5_A436 The Structure Of A Protein Conducting Channel Lengt 2e-56
2yxq_A431 The Plug Domain Of The Secy Protein Stablizes The C 2e-55
2yxr_A426 The Plug Domain Of The Secy Protein Stablizes The C 2e-54
3bo0_A442 Ribosome-Secy Complex Length = 442 6e-52
2ww9_A490 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 2e-50
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  533 bits (1373), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/393 (66%), Positives = 324/393 (82%), Gaps = 3/393 (0%)
Query: 6   RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
           + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFY
Sbjct: 4   KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIL 125
           WMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV +  + DRAL NGAQKL G++
Sbjct: 64  WMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMI 122
Query: 126 IAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLF 185
           I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLF
Sbjct: 123 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 182
Query: 186 IATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNI 245
           IATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+
Sbjct: 183 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 242
Query: 246 TNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLY 305
            NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY
Sbjct: 243 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 302
Query: 306 FISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHAL 363
            ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL +Y++ P S   +  +P HA+
Sbjct: 303 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAV 362
Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
            Y+VFML +CA FSKTWIEVSGSSA+DVAKQLK
Sbjct: 363 VYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLK 395
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482 Back     alignment and structure
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430 Back     alignment and structure
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431 Back     alignment and structure
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
3mp7_A482 Preprotein translocase subunit SECY; protein trans 1e-141
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-138
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-137
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-114
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 6e-05
3din_C431 Preprotein translocase subunit SECY; protein trans 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
 Score =  411 bits (1059), Expect = e-141
 Identities = 127/393 (32%), Positives = 222/393 (56%), Gaps = 14/393 (3%)

Query: 6   RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
               ++     + PEV+   R++P RE+ ++T ++L ++ V +++P+YGI      D F 
Sbjct: 2   GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGI-PERIQDYFQ 60

Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIL 125
           ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + 
Sbjct: 61  FLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVF 120

Query: 126 IAIGEAVAYVMSGMYGSVSQ-LGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISL 184
           +   EA  +++ G +G V   +    A+L+ILQL   GI++I LDEL+ K +G+GSGISL
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISL 179

Query: 185 FIATNICESIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
           FIA  + ++I+ ++ +P T  N       + A++      I    K       +   + P
Sbjct: 180 FIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAP 239

Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSN 303
           ++ +++AT++VF IVVYF+  +V +P+  +     +G+YPI+  Y SN+PIIL  AL +N
Sbjct: 240 DMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIPIILTFALYAN 298

Query: 304 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHAL 363
           +   +++L            LG++  +  S    P+ G   YV  P ++  +  NP  A+
Sbjct: 299 IQLWARVL-----DRLGHPWLGRFDPTTGS----PISGFVLYVIPPRNIFSVIDNPVRAI 349

Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 396
            YL+  +    LF   W+E++G  AR +A+QL+
Sbjct: 350 VYLILTVIFSLLFGYLWVELTGLDARSIARQLQ 382
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure
Probab=100.00  E-value=1.3e-94  Score=750.97  Aligned_cols=402  Identities=65%  Similarity=1.103  Sum_probs=360.6

Q ss_pred             CccchHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHHHHHHhhhccccccccc
Q 014749            3 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELG   82 (419)
Q Consensus         3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~Slf~LG   82 (419)
                      =|+|++|.+||+.+++|||++|++++|+|||++||++++++||+|++||+||+|.++..|++++++++||++|+|+|+||
T Consensus         1 m~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLG   80 (476)
T 2wwb_A            1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELG   80 (476)
T ss_dssp             CCSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSS
T ss_pred             CCchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHh
Confidence            04999999999999999999999999999999999999999999999999999998777889999999999999999999


Q ss_pred             chHHHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHH
Q 014749           83 ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAG  162 (419)
Q Consensus        83 I~PyItAsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~  162 (419)
                      |+||||||||||||++.++.+.+++.+ ||+|+|++||++|+++|++||++++.+++++...+.+...+++++++|++|+
T Consensus        81 I~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt  159 (476)
T 2wwb_A           81 ISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAG  159 (476)
T ss_dssp             STHHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHH
Confidence            999999999999998767888888776 9999999999999999999999998855554333455667789999999999


Q ss_pred             HHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCC
Q 014749          163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL  242 (419)
Q Consensus       163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~l  242 (419)
                      +++|||||+||||||+|||+|++|++||+++++|+.|+|.......+.|++|+++++++.+.+++++.+.+.++++|.++
T Consensus       160 ~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l  239 (476)
T 2wwb_A          160 LIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNL  239 (476)
T ss_dssp             HHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSH
T ss_pred             HHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhcccc
Confidence            99999999999999999999999999999999999999987666666688898888888776666666777788888888


Q ss_pred             chHHHHHHHHHHHHHhhheeceEEEEeeeeccCCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 014749          243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN  322 (419)
Q Consensus       243 p~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~  322 (419)
                      |++..+++++++++++||+|++|||||+||+|++|+++|+|+|+|||||||+|||+|++++|+++++++++.++++..++
T Consensus       240 ~~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~  319 (476)
T 2wwb_A          240 PNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVS  319 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHH
T ss_pred             chHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhh
Confidence            88888888888999999999999999999999999999999999999999999999999999999998865544444344


Q ss_pred             ccccccccc--cCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCc
Q 014749          323 LLGKWKESE--YSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWS  400 (419)
Q Consensus       323 ~l~~~~~~~--~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~  400 (419)
                      +++.|.+.+  .+++++|++|+.+|++||+++.+.+.+|+|.++|.++++++|++|+++|++++|+||||+||||||||+
T Consensus       320 ~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~  399 (476)
T 2wwb_A          320 LLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQM  399 (476)
T ss_dssp             HHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCT
T ss_pred             hhhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            556675321  135789999999999999988888889999999999999999999999999999999999999999999


Q ss_pred             eeccc
Q 014749          401 SLLCY  405 (419)
Q Consensus       401 ~I~~~  405 (419)
                      +|||+
T Consensus       400 ~IpGi  404 (476)
T 2wwb_A          400 VMRGH  404 (476)
T ss_dssp             TTCCC
T ss_pred             ccCCC
Confidence            99996
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 419
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 6e-87
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  268 bits (687), Expect = 6e-87
 Identities = 131/386 (33%), Positives = 214/386 (55%), Gaps = 39/386 (10%)

Query: 11  VRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
           + P L  +PEV+   ++I F+EK+ +T I L ++ +   + +Y   +      F + + I
Sbjct: 3   LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTI 61

Query: 71  LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGE 130
            AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL I++   E
Sbjct: 62  TASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVE 121

Query: 131 AVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
           AV +V +G +G ++ L    A L+I+Q+ F  II+I LDE++ K YG+GSGI LFIA  +
Sbjct: 122 AVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGV 177

Query: 191 CESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLA 250
            ++I   A  P           EG +    + LI                N+  I  ++ 
Sbjct: 178 SQTIFVGALGP-----------EGYLWKFLNSLIQGVP------------NIEYIAPIIG 214

Query: 251 TVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQL 310
           T++VFL+VVY +  +V +P+     +G  G YPIK  Y SN+P+IL +AL +N+      
Sbjct: 215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLA 274

Query: 311 LYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFML 370
           LY        + +LG ++          V G+AYY++ P  L+ + ++P HA+ Y++ M+
Sbjct: 275 LY-----RMGIPILGHYEGGR------AVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMI 323

Query: 371 TACALFSKTWIEVSGSSARDVAKQLK 396
             C +F   W+E +G   + +AK++ 
Sbjct: 324 ITCVMFGIFWVETTGLDPKSMAKRIG 349

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.7e-82  Score=647.37  Aligned_cols=358  Identities=37%  Similarity=0.680  Sum_probs=304.2

Q ss_pred             HhhhhhccccccccccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHHHHHHhhhcccccccccchHHHh
Q 014749            9 HLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVT   88 (419)
Q Consensus         9 ~~~~~~~~~lP~v~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~Slf~LGI~PyIt   88 (419)
                      ++++|+++.+|||++|+|+.++|||++||++++++||+|++||+||+|.+.. |++..++..+|.+++|+|+|||+||||
T Consensus         1 ~~~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-~~~~~~~~~~a~~~~Sif~LGI~PyIt   79 (422)
T d1rh5a_           1 KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTITASRIGTLITLGIGPIVT   79 (422)
T ss_dssp             CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-SCCTTHHHHHTCCTTBTTTTTTHHHHH
T ss_pred             CCccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-cHHHHHHHHhccccccHHHhChHHHHH
Confidence            4689999999999999999999999999999999999999999999988664 556677888899999999999999999


Q ss_pred             HHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 014749           89 SGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICL  168 (419)
Q Consensus        89 AsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~~~v~wL  168 (419)
                      |||+||||+..++.++|+++|+||+|+|++||++|+++|++||.+++..+.+.   +.+....+.++++|++|++++|||
T Consensus        80 ASIImQLL~~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~---~~~~~~~~~iv~~L~aGt~~lmwL  156 (422)
T d1rh5a_          80 AGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYL  156 (422)
T ss_dssp             HHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999988999999999999999999999999999999999998753332   234456778999999999999999


Q ss_pred             HhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCCchHHHH
Q 014749          169 DELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNL  248 (419)
Q Consensus       169 ~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~lp~l~~~  248 (419)
                      ||+||| ||+|||+|++|++||+++++|+.++|.           |.+.++.+.+..+            ...++.+..+
T Consensus       157 ~E~It~-~GiGnGiSLiI~~gI~~~i~~~~~~~~-----------~~~~~~~~~~~~~------------~~~~~~~~~l  212 (422)
T d1rh5a_         157 DEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQG------------VPNIEYIAPI  212 (422)
T ss_dssp             HHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTT------------CCCGGGTHHH
T ss_pred             HHHHhh-cCcccchHHHHHHHHHHHHHHhccchh-----------HHHHHHHHhhhcc------------cchHHHHHHH
Confidence            999999 999999999999999999999999873           2222222222111            1223456677


Q ss_pred             HHHHHHHHHhhheeceEEEEeeeeccCCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccc
Q 014749          249 LATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK  328 (419)
Q Consensus       249 ~~~l~~~~~~V~l~~~~~~IPi~~~~~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~~l~~~~  328 (419)
                      +.++++++++||+|++|||||++|+|.++.++|+|+|+|+||+||+|||++++++|+++++++++...     ++++.|+
T Consensus       213 ~~~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~-----~~l~~~~  287 (422)
T d1rh5a_         213 IGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGI-----PILGHYE  287 (422)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSC-----CTTCCBC
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhccc-----ccccccC
Confidence            77888888999999999999999999999999999999999999999999999999999999876422     2455564


Q ss_pred             ccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCceeccc
Q 014749          329 ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCY  405 (419)
Q Consensus       329 ~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I~~~  405 (419)
                      .      ..+++++++|++||.++.+...+|.|.++|.++.+++|++|++||++++|+||||+||||||||++|||+
T Consensus       288 ~------~~~~~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGi  358 (422)
T d1rh5a_         288 G------GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGF  358 (422)
T ss_dssp             S------SSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC----------
T ss_pred             C------CchHHHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCC
Confidence            3      2578999999999988888888999999999999999999999999999999999999999999999996