Citrus Sinensis ID: 014758

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
ccHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccHHcccccccccHHHHHHHHHHHcccccccccccccEEEccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccccEEEcccccccccccEEEEEEEcccccccEEEEEccccccccccccEEEEEEccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccEEEcccccEEEcccccEEEEEccccccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHcccccccc
ccHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEccEEcccccccccEEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEcccccccccccccEEEEEEEEEEEccccccccEEEEEEcccccHHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MALKNIVKEMRDGIgnisrrgserrcsengkhnmrrrgrsyiapegssssskIIVEqsqwanmppELLLDIIQRIEasqtswparRDVVACASVCKSWRAVTKEIIRtpeqcgllsfpvslkqpgprdapiqcyirrerptgtyrlylglspgDMSKLLLAARKIRKATSTDFLISLvgddfsrtsntyvgklrsnflgtkftiydsqppcdtaihsnsrsqrkifpkqvslkgsssnysVATISYELNVlrtrgprrmqctmhsipisaiqeggtaptpieftncceeqipsspspvskgkkplvefsstslsgplesfgsagdplilknkaprWHEQLQCWCLNFKGRVTVASVKNFQLVaaaepnqnvsvAEQERVILQFGkigkdiftmdyrypLSALQAFAICLssfdtkpace
malknivkemrdgignisrrgserrcsengkhnmrrrgrsyiapegsssssKIIVEQSQWANMPPELLLDIIQRIEAsqtswparrDVVACASVCKSWRAVTKEIIrtpeqcgllsfpvslkqpgprdapiqcyirrerptGTYRLYLGLSPGDMSKLLLAARKIRKATSTDflislvgddfsrtsntyvGKLRSNFLGTKFTIYDSQPPCDTAihsnsrsqrkifpkqvslkgsssnysvATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPsspspvskgkkPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAaaepnqnvsvaeQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGsssssKIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIpsspspvskgkkpLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
******************************************************V**SQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQ******************************YSVATISYELNVLRTRGPRRMQCTMHSIPISAIQE******PIEFTNC***************************************PLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSF*******
**LKNI**E*R****************************************************PPELLLDIIQ*****************CASVCKSWRAV***************FPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQP**********************************ISYELNVLRTRGPRRM******************************************************************PLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLV***********AEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
MALKNIVKEMRDGIGNIS***************MRRRGRSYI*********KIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQ**************LVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
***********DGIGNISRRGSERRCS************************KIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQP********************VSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTP*****************************************SAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAE********EQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPAC*
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MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
Q6Z2G9428 Tubby-like F-box protein yes no 0.992 0.971 0.617 1e-148
Q0WPY0413 Tubby-like F-box protein yes no 0.894 0.907 0.627 1e-142
Q8GVE5394 Tubby-like F-box protein no no 0.926 0.984 0.580 1e-129
Q2QXB2445 Tubby-like F-box protein no no 0.980 0.923 0.505 1e-127
Q10LG8403 Tubby-like F-box protein no no 0.957 0.995 0.558 1e-127
Q8H485406 Tubby-like F-box protein no no 0.964 0.995 0.541 1e-124
Q9FRH7445 Tubby-like F-box protein no no 0.973 0.916 0.515 1e-122
Q8VY21406 Tubby-like F-box protein no no 0.961 0.992 0.540 1e-119
Q75HX5445 Tubby-like F-box protein no no 0.995 0.937 0.487 1e-117
Q7XSV4462 Tubby-like F-box protein no no 0.983 0.891 0.477 1e-117
>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1 Back     alignment and function desciption
 Score =  524 bits (1350), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/431 (61%), Positives = 329/431 (76%), Gaps = 15/431 (3%)

Query: 1   MALKNIVKE---MRDGIGNISRRGSERRCSENGKHNMRR-----RGRSYIAPEGSSSSSK 52
           M+LK+IV+E   MRDGIG++SRR ++ R       +          +     +      +
Sbjct: 1   MSLKSIVRELREMRDGIGSMSRRAADGRAGGGRGGSRHSWPVLWSEQQQPPQQQQLQRQE 60

Query: 53  IIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQC 112
              +Q +WAN+PPELLLD+IQR+EAS+ +WPARR VVACA+VC+SWR VTKE+++T E+C
Sbjct: 61  HQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEEC 120

Query: 113 GLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP---GDMSKLLLAARKIRKAT 169
           G ++FP+SLKQPGPR+ P+QC++RR+R T TY LYLGLSP   G+  KLLLAARKIR+AT
Sbjct: 121 GRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRAT 180

Query: 170 STDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQ 229
            T F+ISLV +DFS +S+TYVGKL+ NFLGTKFTI+DSQPPCD  +  N+R  ++ F KQ
Sbjct: 181 RTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKRHF-KQ 239

Query: 230 VSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEE 289
           VS +    NY+VAT+SYEL VLR RGPRRMQCTMHSIP   IQEGG APTP    +  +E
Sbjct: 240 VSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDE 299

Query: 290 QIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGD-PLILKNKAPRWHEQLQCWCLNFK 348
           Q+P+  +  SKGK+P +EFSSTSLS  L       + PL+LKNKAPRWHEQLQCWCLNF+
Sbjct: 300 QVPALST--SKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFR 357

Query: 349 GRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAIC 408
           GRVTVASVKNFQLVA+ +P+  +  AEQE+VILQFGKIGKDIFTMDYRYPLSA QAFAIC
Sbjct: 358 GRVTVASVKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAIC 417

Query: 409 LSSFDTKPACE 419
           L+SFDTKPACE
Sbjct: 418 LTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q0WPY0|TLP6_ARATH Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1 Back     alignment and function description
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
225458249416 PREDICTED: tubby-like F-box protein 5 is 0.978 0.985 0.734 1e-179
225430726413 PREDICTED: tubby-like F-box protein 5-li 0.973 0.987 0.721 1e-173
255538682413 phosphoric diester hydrolase, putative [ 0.966 0.980 0.714 1e-172
224062119416 f-box family protein [Populus trichocarp 0.978 0.985 0.703 1e-167
224085682416 f-box family protein [Populus trichocarp 0.978 0.985 0.696 1e-166
356552095423 PREDICTED: tubby-like F-box protein 5-li 0.980 0.971 0.686 1e-164
302142510367 unnamed protein product [Vitis vinifera] 0.861 0.983 0.684 1e-163
356538200414 PREDICTED: tubby-like F-box protein 5-li 0.971 0.983 0.680 1e-160
356496747415 PREDICTED: tubby-like F-box protein 5-li 0.973 0.983 0.678 1e-160
356564284436 PREDICTED: tubby-like F-box protein 5-li 0.983 0.944 0.663 1e-159
>gi|225458249|ref|XP_002282152.1| PREDICTED: tubby-like F-box protein 5 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 312/425 (73%), Positives = 353/425 (83%), Gaps = 15/425 (3%)

Query: 1   MALKNIVKE---MRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQ 57
           M  K+IV+E   MRD IGN SRR +E      GKH   RRGRS+IAPEGS SSS +  +Q
Sbjct: 1   MHFKSIVRELRDMRDSIGNSSRRRAE------GKHT-NRRGRSHIAPEGSPSSSALFQQQ 53

Query: 58  SQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSF 117
           SQWANMPPELLLDIIQR+EA++ SWPARRDVV+C SVC+SWR +TKEI++TPEQCG L+F
Sbjct: 54  SQWANMPPELLLDIIQRVEAAEASWPARRDVVSCGSVCRSWRDITKEIVKTPEQCGCLTF 113

Query: 118 PVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP---GDMSKLLLAARKIRKATSTDFL 174
           P+SLKQPGPR++ IQC+I+RER T T+RLYLGLSP   GD SKLLLAARKIR+ATST+F+
Sbjct: 114 PISLKQPGPRESQIQCFIKRERATSTFRLYLGLSPALSGDASKLLLAARKIRRATSTEFV 173

Query: 175 ISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKG 234
           ISL+GDDFSR +N YVGKL+SNFLGTKFTIYDSQPP D A+ SN +S  ++  KQ S + 
Sbjct: 174 ISLLGDDFSRATNAYVGKLKSNFLGTKFTIYDSQPPHDPAVQSNCQSNGRLHSKQGSTRS 233

Query: 235 SSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSS 294
            S NY+VATISYELNVLRTRGPRRM CTMH IPISAIQEGGTAPTP+ F  C ++Q P S
Sbjct: 234 PSGNYNVATISYELNVLRTRGPRRMHCTMHWIPISAIQEGGTAPTPMTFAKCQKDQFPQS 293

Query: 295 PSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 354
             P  KGK PL+EFSS SL+   ES     +PL+LKNKAPRWHEQLQCWCLNFKGRVTVA
Sbjct: 294 ADP--KGKNPLIEFSSNSLAETPESIQDTRNPLVLKNKAPRWHEQLQCWCLNFKGRVTVA 351

Query: 355 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDT 414
           SVKNFQLVAA EP QNVSVAEQE+VILQFGKIGKDIFTMDYRYPLSA QAFAICLSSFDT
Sbjct: 352 SVKNFQLVAAVEPCQNVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDT 411

Query: 415 KPACE 419
           KPACE
Sbjct: 412 KPACE 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430726|ref|XP_002265804.1| PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538682|ref|XP_002510406.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223551107|gb|EEF52593.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224062119|ref|XP_002300764.1| f-box family protein [Populus trichocarpa] gi|222842490|gb|EEE80037.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224085682|ref|XP_002307662.1| f-box family protein [Populus trichocarpa] gi|222857111|gb|EEE94658.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356552095|ref|XP_003544406.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|302142510|emb|CBI19713.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538200|ref|XP_003537592.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356496747|ref|XP_003517227.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356564284|ref|XP_003550385.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.871 0.820 0.484 8.7e-132
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.866 0.921 0.591 5.9e-112
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.656 0.604 0.496 9.1e-109
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.921 0.934 0.549 2.5e-106
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.971 0.948 0.471 7.1e-100
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.818 0.902 0.517 1.9e-90
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.859 0.925 0.498 1.1e-89
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.582 0.643 0.452 6.3e-89
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.195 0.162 0.538 1.3e-35
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.195 0.162 0.538 1.3e-35
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 917 (327.9 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
 Identities = 186/384 (48%), Positives = 257/384 (66%)

Query:     1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIA-PEGXXXXXKIIVEQSQ 59
             M+ + IV+++RDG G++SRR  + R S    H  + +G S+            +IV+ S+
Sbjct:     1 MSFRGIVQDLRDGFGSLSRRSFDFRLSS--LHKGKAQGSSFREYSSSRDLLSPVIVQTSR 58

Query:    60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPV 119
             WAN+PPELL D+I+R+E S+++WPAR+ VVACASVC+SWRA+ +EI+  PE CG L+FPV
Sbjct:    59 WANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPV 118

Query:   120 SLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLIS 176
             SLKQPGPRDA IQC+I+R++   T+ L+L LSP    +  K LL+A++ R+ T T+++IS
Sbjct:   119 SLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIIS 178

Query:   177 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDT---AIHSNSRSQRKIFPKQVSLK 233
             +  D+ SR+SN+Y+GKLRSNFLGTKF +YD+QPP +T   A+ ++  S+ +   ++VS K
Sbjct:   179 MDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPK 238

Query:   234 GSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPT--------PIEFTN 285
               S +Y++A I+YELNVL TRGPRRM C M+SIPIS+++ GG+ P         P    +
Sbjct:   239 VPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDD 298

Query:   286 CCEEQIXXXXXXXXXXXXXLVE--FSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCW 343
                  I                  FS   +S       ++  PLILKNK PRWHEQLQCW
Sbjct:   299 SFRSNISFSKSSFDHRSLDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCW 358

Query:   344 CLNFKGRVTVASVKNFQLVAAAEP 367
             CLNF+GRVTVASVKNFQLVAA +P
Sbjct:   359 CLNFRGRVTVASVKNFQLVAARQP 382
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0005829 "cytosol" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z2G9TLP5_ORYSJNo assigned EC number0.61710.99280.9719yesno
Q0WPY0TLP6_ARATHNo assigned EC number0.62730.89490.9079yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014597001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (416 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
pfam01167243 pfam01167, Tub, Tub family 1e-103
pfam1293747 pfam12937, F-box-like, F-box-like 4e-05
pfam0064648 pfam00646, F-box, F-box domain 0.004
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  307 bits (787), Expect = e-103
 Identities = 117/295 (39%), Positives = 158/295 (53%), Gaps = 57/295 (19%)

Query: 124 PGPRDAPIQCYIRRERPTGTYRLYLGLSP-----GDMSKLLLAARKIRKATSTDFLISLV 178
           P PR   +QC I R++    Y L+              K LLAARK +++ ++++LISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 179 GDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSN 238
             D SR+ + Y+GKLRSNFLGTKFT++D+      A             + V+ K +S  
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKA-------------RLVTPKVASGR 107

Query: 239 YSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPV 298
             +A + YE NVL  RGPR+M   M  IP S                   E++P  P   
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSH------------------ERVPIQPLND 149

Query: 299 SKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKN 358
            +    L  + + +    L           L NKAPRW++QLQ + LNF GRVT ASVKN
Sbjct: 150 QESL--LSRWQNKNKESLLV----------LHNKAPRWNDQLQSYVLNFHGRVTQASVKN 197

Query: 359 FQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 413
           FQ+V A++P         + ++LQFG++ KD+FTMDYRYPLSA QAFAICLSSFD
Sbjct: 198 FQIVHASDP---------DYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.76
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 98.12
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.8
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.65
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.35
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.22
KOG2997366 consensus F-box protein FBX9 [General function pre 88.99
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-127  Score=947.01  Aligned_cols=351  Identities=50%  Similarity=0.804  Sum_probs=303.1

Q ss_pred             CchhhHHHHhccccccccccccccccccCCCcccccCCccccCCCCCCCCcccccccCcCCCCCHHHHHHHHHHHHhcCC
Q 014758            1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQT   80 (419)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~ell~~i~~r~e~se~   80 (419)
                      |+++++++++++..      +++++..+      +|++. +...++....  .....+.|++||||||+|+|+|+|++|+
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~------~~~~~-~~~~~~~~~~--s~~~~~~~~~l~~~~L~d~~~r~eese~   65 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGS------GTKGP-EDKSEDSGFP--SPSDQSLWAALPPELLSDVLKRDEESED   65 (355)
T ss_pred             CCccCccCCCCccc------chhccccc------ccccC-CCccCCcCCc--cccccchhhcCCHhHHHHHhhhcccccc
Confidence            78889999988776      44443321      12211 1112221111  1112289999999999999999999999


Q ss_pred             CCCCccceeeccccChhHHHHhHhhhcCccccCcccccccccCCCCCCCceEEEEEEecCCceEEEEeecCC----CCCC
Q 014758           81 SWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP----GDMS  156 (419)
Q Consensus        81 ~wp~r~~vvaca~vc~~wr~~~~eiv~~pe~~g~~tfp~sLkqPgPrd~~iqC~I~RdK~~~tY~LYL~l~~----~e~g  156 (419)
                      .||+|++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+    .|++
T Consensus        66 ~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~  145 (355)
T KOG2502|consen   66 TWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNK  145 (355)
T ss_pred             ccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877    4779


Q ss_pred             ceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCC
Q 014758          157 KLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS  236 (419)
Q Consensus       157 KfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~  236 (419)
                      ||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|..          .+|.++      ++|+
T Consensus       146 kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~----------~~r~~~------~~~~  209 (355)
T KOG2502|consen  146 KFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN----------PSRRFN------KVPS  209 (355)
T ss_pred             eeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC----------cccccc------cCCc
Confidence            999999999999999999999999999999999999999999999999999732          234443      5899


Q ss_pred             CceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 014758          237 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGP  316 (419)
Q Consensus       237 ~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~~~k~k~~~~~~~~~~~~~~  316 (419)
                      ++|+||+|+||+||||+||||||+|+||+||.++  ++|++|.|.+..+..     .+    .+.               
T Consensus       210 ~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l----~r~---------------  263 (355)
T KOG2502|consen  210 GRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL----FRS---------------  263 (355)
T ss_pred             ccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh----hhc---------------
Confidence            9999999999999999999999999999999877  899998886532210     11    010               


Q ss_pred             CCCCCCCCCceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEcc
Q 014758          317 LESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYR  396 (419)
Q Consensus       317 ~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~  396 (419)
                        .++.++++++|+||+|+|||++||||||||||||+||||||||||.         .++++|||||||||||+|||||+
T Consensus       264 --~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYr  332 (355)
T KOG2502|consen  264 --QNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYR  332 (355)
T ss_pred             --cccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeeccc
Confidence              1224689999999999999999999999999999999999999998         56799999999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCCcccCC
Q 014758          397 YPLSALQAFAICLSSFDTKPACE  419 (419)
Q Consensus       397 yPlS~~QAFaI~LssfdtKlACe  419 (419)
                      |||||||||||||||||+|||||
T Consensus       333 YPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  333 YPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             CccHHHHHHHHHHHhccccccCC
Confidence            99999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 7e-41
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 1e-40
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 3e-40
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 5e-39
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 8e-37
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (416), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 156/306 (50%), Gaps = 65/306 (21%)
Query: 123 QPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLIS 176
           +P P+   I+C I R++         TY L+L    G     LLA RK +K+ ++++LIS
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGK-KVFLLAGRKRKKSKTSNYLIS 82
Query: 177 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVS---LK 233
           +   D SR  ++Y+GKLRSN +GTKFT+YD+                 + P++ S   L+
Sbjct: 83  VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDN----------------GVNPQKASSSTLE 126
Query: 234 GSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXX 293
             +    +A + YE NVL  +GPR+M         S I  G          N   E++  
Sbjct: 127 SGTLRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVSI 168
Query: 294 XXXXXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTV 353
                      L  + + +    +E          L+NK P W++  Q + LNF GRVT 
Sbjct: 169 RPRNEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQ 216
Query: 354 ASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 413
           ASVKNFQ++   +P         + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD
Sbjct: 217 ASVKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFD 267
Query: 414 TKPACE 419
           +K ACE
Sbjct: 268 SKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 8e-88
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 5e-86
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 1e-04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  267 bits (683), Expect = 8e-88
 Identities = 99/302 (32%), Positives = 148/302 (49%), Gaps = 57/302 (18%)

Query: 121 LKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP---GDMSKLLLAARKIRKATSTDFLISL 177
           + +P P+   ++C + R++      +Y         +    LLA RK +++ + ++LIS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 178 VGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSS 237
              + SR    ++GKLRSN LG +FT++D+                    +  S   +S 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 238 NYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSP 297
              +A + YE NVL  RGPRRM   +  +                      E++P  P  
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSAE------------------NERVPIRPRN 175

Query: 298 VSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVK 357
            S G   LV + + +L             + L NK P W++    + LNF+GRVT ASVK
Sbjct: 176 ASDG--LLVRWQNKTLE----------SLIELHNKPPVWNDDSGSYTLNFQGRVTQASVK 223

Query: 358 NFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPA 417
           NFQ+V A +P+          ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD K A
Sbjct: 224 NFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLA 274

Query: 418 CE 419
           CE
Sbjct: 275 CE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.12
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.95
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.81
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.59
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.7
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.54
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.82
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 92.07
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.76
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-89  Score=667.88  Aligned_cols=242  Identities=40%  Similarity=0.682  Sum_probs=184.2

Q ss_pred             ccCCCCCCCceEEEEEEecCCc------eEEEEeecCCCCCCceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeee
Q 014758          121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLR  194 (419)
Q Consensus       121 LkqPgPrd~~iqC~I~RdK~~~------tY~LYL~l~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLR  194 (419)
                      |+||+|+|+++||+|+|||+|+      +|||||+   .++++|||||||+|+++|+||+||+|++||||++++||||||
T Consensus        29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~---~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLr  105 (276)
T 2fim_A           29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD---TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLR  105 (276)
T ss_dssp             GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC---SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEE
T ss_pred             hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe---CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEE
Confidence            9999999999999999999984      9999996   477899999999999999999999999999999999999999


Q ss_pred             eceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCC
Q 014758          195 SNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEG  274 (419)
Q Consensus       195 SNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~g  274 (419)
                      |||+||+|||||+|++.+.               ..+|.++.+|+|||+|+||+||||++|||+|+|+||.+   . +.|
T Consensus       106 SNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~-~~~  166 (276)
T 2fim_A          106 SNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-AEN  166 (276)
T ss_dssp             ECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C-TTS
T ss_pred             EccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-cCC
Confidence            9999999999999954321               13566778899999999999999999999999998653   1 223


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeeecc
Q 014758          275 GTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA  354 (419)
Q Consensus       275 g~~p~q~~~~~~~~e~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~a  354 (419)
                      +..|.+            +..    .......++.          +...+++++|+||+|+|||++|||||||+||||+|
T Consensus       167 ~~~~~~------------p~~----~~~~ll~~~~----------~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a  220 (276)
T 2fim_A          167 ERVPIR------------PRN----ASDGLLVRWQ----------NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA  220 (276)
T ss_dssp             CBCCCC------------CSS----TTCSHHHHHH----------HTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred             CEeccc------------CCC----cccccchhhh----------ccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence            322221            110    0000111111          22457899999999999999999999999999999


Q ss_pred             ccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014758          355 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE  419 (419)
Q Consensus       355 SVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssfdtKlACe  419 (419)
                      ||||||||++         +|+++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       221 SvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          221 SVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            9999999998         6778999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 419
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-93
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 3e-05
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  280 bits (718), Expect = 1e-93
 Identities = 96/304 (31%), Positives = 149/304 (49%), Gaps = 57/304 (18%)

Query: 121 LKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP-----GDMSKLLLAARKIRKATSTDFLI 175
             +P P+   I+C I R++      ++                LLA RK +K+ ++++LI
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 176 SLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGS 235
           S+   D SR  ++Y+GKLRSN +GTKFT+YD+      A                +L+  
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKA-------------SSSTLESG 120

Query: 236 SSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSP 295
           +    +A + YE NVL  +GPR+M   +  + +                           
Sbjct: 121 TLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV--------------------HERVCI 160

Query: 296 SPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVAS 355
            P ++ +  L  + + +    +E          L+NK P W++  Q + LNF GRVT AS
Sbjct: 161 RPRNEHETLLARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQAS 210

Query: 356 VKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTK 415
           VKNFQ++   +P         + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 211 VKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSK 261

Query: 416 PACE 419
            ACE
Sbjct: 262 LACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.04
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.03
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.78
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.69
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-85  Score=630.34  Aligned_cols=246  Identities=40%  Similarity=0.679  Sum_probs=206.5

Q ss_pred             ccCCCCCCCceEEEEEEecCCc------eEEEEeecCCCCCCceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeee
Q 014758          121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLR  194 (419)
Q Consensus       121 LkqPgPrd~~iqC~I~RdK~~~------tY~LYL~l~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLR  194 (419)
                      |.||||+|++|||+|+|||+++      +|+|||+.+ .++++|||||||+|+++++|||||+|++|+||++++||||||
T Consensus        14 l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~-~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvGKlr   92 (265)
T d1c8za_          14 ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE-DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLR   92 (265)
T ss_dssp             HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT-TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSEEEE
T ss_pred             hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC-CCceeEEEEEeeecCCCcceEEEEccHHHhcccccceeEEee
Confidence            9999999999999999999876      699999754 245679999999999999999999999999999999999999


Q ss_pred             eceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCC
Q 014758          195 SNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEG  274 (419)
Q Consensus       195 SNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~g  274 (419)
                      |||+||+|||||+|++++.++.             .++.....|+|||+|+||+||||+||||+|+|+||.|+..     
T Consensus        93 SNflGTkF~iYD~G~~p~~~~~-------------~~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~-----  154 (265)
T d1c8za_          93 SNLMGTKFTVYDNGVNPQKASS-------------STLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV-----  154 (265)
T ss_dssp             ECTTSSEEEEECSSBCGGGCCT-------------TGGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTT-----
T ss_pred             ccccCCEEEEecCCCCcccccc-------------cccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcc-----
Confidence            9999999999999966554332             1122334578999999999999999999999999877531     


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeeecc
Q 014758          275 GTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA  354 (419)
Q Consensus       275 g~~p~q~~~~~~~~e~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~a  354 (419)
                          .+..       .+.+.    ........++          .+...+++++|+||+|+||+++|||+|||+|||++|
T Consensus       155 ----~~~~-------~~~p~----~~~~~~~~~~----------~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~  209 (265)
T d1c8za_         155 ----HERV-------CIRPR----NEHETLLARW----------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQA  209 (265)
T ss_dssp             ----SCBC-------CCCCS----STTSSHHHHH----------HTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEEC
T ss_pred             ----cccc-------ccCCC----CcchhhhHHh----------hccCcccceEEecCCCeeeccCCEEEeccCCEEecc
Confidence                1100       11111    1111111111          123567899999999999999999999999999999


Q ss_pred             ccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014758          355 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE  419 (419)
Q Consensus       355 SVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssfdtKlACe  419 (419)
                      ||||||||++         ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       210 SvKNFql~~~---------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         210 SVKNFQIIHG---------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             BTTEEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             ccceEEEEeC---------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            9999999987         6778999999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure