Citrus Sinensis ID: 014794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MTNITPLSHYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKGGGGEGSSRGRNYVDRQGGRSDRWVFSMTPPFVSKMGFVKVGGEGMGLGDGWNSNGRNLLTAVKSPLNCLNVKIGQGGESSSARPQV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHccccEEEEEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccEEEEcccccccccccccEEEEEEcccccccEEEEcccccccccHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHcccccccccccccccccccccccccccccccEEEcccccccEEEEcccHHHHHHHHHHccccccccHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
mtnitplshyslasrirSDFHLILMIMRFenfnpsrwIIHVTWLLLLWPTlydyasaqtvtqppanpdglyttldpSMAIIILVLISTFFIVAMFSIYVRHcsdsraqggvlpsralaglsrnrgldpsviesFPIFVYSAVKDLKIGKGALECAVCLsefeddetlrllpkcdhvfhphcIDVWLAshvtcpvcranltpesnekvklcdsnnesnqthnnsaselsgeqsRAVIDIngeqsnsdAQALEITNAashvtpmrnrpprlgmperfprshstghSLVLAGVSverytlrfpDEVRKQLMTRGKLKRTASFNAVLAMegssrkggggegssrgrnyvdrqggrsdrwvfsmtppfvskmgfvkvggegmglgdgwnsngRNLLTAVKsplnclnvkigqggesssarpqv
Flexible Loop (DISEMBL)
mtnitplshyslasRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNesnqthnnsaselsgeQSRAVIDINGEQSNSDAQALEITNaashvtpmrnrppRLGMPERFPRSHSTGHSLVLagvsverytlrfPDEVRkqlmtrgklkrtasfnavlamegssrkggggegssrgrnyvdrqggrsdrwvfsmtppfvSKMGFVKVGGEGMGLGDGWNSNGRNLLTAVKSPLNCLnvkigqggesssarpqv
Low Complexity Region (SEG)
MTNITPLSHYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMegssrkggggegssrgrNYVDRQGGRSDRWVFSMTPPFVSKMGFVKVGGEGMGLGDGWNSNGRNLLTAVKSPLNCLNVKIGQGGESSSARPQV
Disordered region (IsUnstruct)
********HYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL************************************************************************************SLVLAGVSVERYTLRFPDEVRKQLM*********************************************RWVFSMTPPFVSKMGFVKVGGEGMGLGDGWNSNGRNLLTAVKSPLNCLNVKI*************
Disordered Region (DISOPRED)
****TP*SHYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWP***************************SMAIIILVLISTFFIVAMFSIYVRHCS**************************VIESFPIFVYSAV*******GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT**************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MTNITPLSHYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKL*********************QSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAME***************RNYVDRQGGRSDRWVFSMTPPFVSKMGFVKVGGEGMGLGDGWNSNGRNLLTAVKSPLNCLNVKIG************
Disordered Region (DISPRO)
**NITPLSHYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYD******************TTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDS*******************GLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT*************************************************************************************VLAGVSVERYTLRFPDEVRKQLMTRGKLKRTAS*NAV***********************************S*******************************LLTAVKSPLNCLNV***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNITPLSHYSLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKGGGGEGSSRGRNYVDRQGGRSDRWVFSMTPPFVSKMGFVKVGGEGMGLGDGWNSNGRNLLTAVKSPLNCLNVKIGQGGESSSARPQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
Q8RXX9	398	E3 ubiquitin-protein liga	yes	no	0.724	0.761	0.422	1e-63
Q8LGA5	368	E3 ubiquitin-protein liga	no	no	0.629	0.714	0.417	8e-61
Q8W571	323	RING-H2 finger protein AT	no	no	0.688	0.891	0.407	3e-55
Q84W40	404	RING-H2 finger protein AT	no	no	0.806	0.834	0.376	1e-50
Q9SK92	381	E3 ubiquitin-protein liga	no	no	0.779	0.855	0.355	2e-46
O64763	378	E3 ubiquitin-protein liga	no	no	0.550	0.608	0.406	3e-43
Q9M0R5	345	Putative RING-H2 finger p	no	no	0.626	0.759	0.387	3e-42
Q9M0R4	357	Putative RING-H2 finger p	no	no	0.566	0.663	0.401	1e-38
Q9C7I1	327	RING-H2 finger protein AT	no	no	0.679	0.868	0.386	5e-38
O49691	289	RING-H2 finger protein AT	no	no	0.631	0.913	0.328	8e-34

>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/353 (42%), Positives = 200/353 (56%), Gaps = 50/353 (14%)

Query: 38  IIHVTWLLLLWPTLYDYASAQTVTQP-PANPDGLYTTLDPSMAIIILVLISTFFIVAMFS 96
           ++ + +LL+L  +  D A++Q+  QP P N    Y  L P+MA+I+++LI+  F +  FS
Sbjct: 12  VLPIVFLLIL--SSADLAASQS--QPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFS 67

Query: 97  IYVRHCSDSRAQGGVLP-----SRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGA 151
           IY RHCS      GV P     SRA    +  RGLD SV+E+FP F+YS VK  K+GKG 
Sbjct: 68  IYFRHCSGV-PDAGVSPAGGARSRATVNAA-ARGLDVSVVETFPTFLYSDVKTQKLGKGE 125

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
           LECA+CL+EFEDDETLRLLPKCDHVFHPHCID WL +HVTCPVCRANL  +  E      
Sbjct: 126 LECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAE------ 179

Query: 212 SNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGM 271
                 ++     +E   E  + V++     +    + L  +   S   P        G+
Sbjct: 180 -----GESVEPGGTEPDLELQQVVVNPEPVVTAPVPEQLVTSEVDSRRLP--------GV 226

Query: 272 P-----ERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAME 326
           P      +F RSH+TGHS+V  G   ER+TLR P++VRK++M   KL RT S   VL   
Sbjct: 227 PVDLKRVKFSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSL-LVLPRG 285

Query: 327 GSSRKGGGGEGSSRGRNYVDRQGGRSDRWVFSMTPPFVSKM---GFVKVGGEG 376
           GSSR+G            +DR   RSDRW+F  TP F+ +    G +++G  G
Sbjct: 286 GSSRRG----------KPIDRSRARSDRWLFRKTPSFLWRSRDDGSIRLGATG 328

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2

 Score =  234 bits (598), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 184/323 (56%), Gaps = 60/323 (18%)

Query: 66  NPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPS----RALAGLS 121
           +P     +L P+MA++++V+I+  F +  F++Y+RHC+ +   G V P+    R +   +
Sbjct: 33  DPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCTGA-VDGSVTPAGGARRRVTNAT 91

Query: 122 RNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHC 181
             RGLD   IE+FP FVYS VK  KIGKGALECA+CL+EFEDDETLRLLPKCDHVFHPHC
Sbjct: 92  VARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHC 151

Query: 182 IDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGE 241
           I  WL  HVTCPVCR NL  ++ E   + +++ E+ Q                       
Sbjct: 152 IGAWLQGHVTCPVCRTNLAEQTPEPEVVVETDLEAQQ----------------------- 188

Query: 242 QSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPD 301
           QS      +E+              PR+    +FPRSH+TGHS+VL G S +R+TLR P+
Sbjct: 189 QSAVPVPVVEL--------------PRV----KFPRSHTTGHSVVLPGESTDRFTLRVPE 230

Query: 302 EVRKQLMTRGKLKRTASFNAVLAMEGSSRKGGGGEGSSRGRNYVDRQGGRSDRWVFSMTP 361
           E+RK++M   KL R+ S   VL   GSSR G            VDR   +SDRW+F  TP
Sbjct: 231 ELRKKIMANWKLNRSNSV-FVLPRGGSSRSG----------KQVDRSRAKSDRWLFRKTP 279

Query: 362 PFVSKM---GFVKVGGEGMGLGD 381
            F+ +    G +++GG G   G+
Sbjct: 280 SFLWRNRDDGSIRLGGTGSVRGN 302

E3 ubiquitin-protein ligase that is required for the plant C/N response during seedling growth transition. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score =  216 bits (549), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 187/336 (55%), Gaps = 48/336 (14%)

Query: 25  MIMRFENFNPSRWII-HVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIIL 83
           M+ R E FNP RWII HV  ++         A+AQ+ +  P+ PD L T   PS   +  
Sbjct: 1   MMTRVECFNPHRWIILHVAIII------QSKANAQSFS--PSPPD-LQTGHTPSKTTVFA 51

Query: 84  VLISTFFIVAMFSIYVRHCSDSRAQGGV--LPSRALAGLSRNRGLDPSVIESFPIFVYSA 141
           VL++ FF+  + S+Y+RHC+ S          +RA  G SR  GLD +V+ESFP+F YS+
Sbjct: 52  VLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSS 111

Query: 142 VKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201
           VK+ KIG   LECA+CL+E ED ET+RLLP C+H+FH  CID WL SH TCPVCR+NLT 
Sbjct: 112 VKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTA 171

Query: 202 ESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTP 261
           +SN+                +    L+  +   V+DI         + +E+  A SH   
Sbjct: 172 KSNKP------------GDEDDGVPLAAMRDHVVVDI---------ETVEV--AKSH--- 205

Query: 262 MRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLM-TRG-KLKRTASF 319
             +R     +  +FPRS+STGHS+       ER+TLR PD+V+ +LM  +G +LKRT SF
Sbjct: 206 --HRRLSSEISGKFPRSNSTGHSMDRFSDGTERFTLRLPDDVKMRLMAVKGRRLKRTRSF 263

Query: 320 NAVLAMEGSSRKGGG-----GEGSSRGR-NYVDRQG 349
           +  L  E   R G       G G+  GR N+ DR G
Sbjct: 264 DVDLTAEHYCRSGEESSNTIGSGAKSGRVNWPDRWG 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 201/369 (54%), Gaps = 32/369 (8%)

Query: 57  AQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVL--PS 114
           A   T   ++  G  +  DP+MAI+++VL+S FF +  FS+Y+R C + R  G     P+
Sbjct: 42  AGQATHGGSDVSGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLE-RVMGMDYGNPN 100

Query: 115 RALAGLSRNR----GLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLL 170
            A   L+ NR    GLD S+IE+FP F YS VK L+IGK ALEC+VCL+EFEDDETLRL+
Sbjct: 101 DAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLI 160

Query: 171 PKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGE 230
           PKC HVFHP CID WL SH TCP+CRA+L P   E +    S       ++   S+ +G+
Sbjct: 161 PKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIV---SIQIPGLVNDPPGSDPNGD 217

Query: 231 QSRAVIDINGEQSNSDAQALE-ITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAG 289
           + R++        + DA+ +E +    +   P R+      +   F  S  TG       
Sbjct: 218 RIRSL-------GSPDARLIESVALTCNQSMPRRSMSTGWNLAGMFTNSDRTGQH----S 266

Query: 290 VSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKGGGGEGSSRGRNYVDR-- 347
            +++R+TLR P ++  +L+     K   +   V++     R   G  GS R   Y +R  
Sbjct: 267 ENLDRFTLRLPQDIHNKLVNPNLSKVHVALPQVMSSTRGYRT--GSLGSERNYFYYERFD 324

Query: 348 QGGRSDRWVFSMTPPF-VSKMGFVKVGGEGMGLGDGWN-SNGRNLLTAVKSPLNCLNV-K 404
           Q GR DR  FS+TPP+  S +  +  GG G   GD    S+ ++LL A++SP + L + K
Sbjct: 325 QDGRLDRRPFSITPPYRTSSINHMSPGGSG---GDKVRASSPKSLLLAMRSPFDRLFLGK 381

Query: 405 IGQGGESSS 413
               GE+SS
Sbjct: 382 NNNVGENSS 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 183/354 (51%), Gaps = 28/354 (7%)

Query: 72  TTLDPSMAIIILVLISTFFIVAMFSIYVRHC---SDSRAQGGVLPSRALAGLSRNRGLDP 128
           T+  P+ AII++VL+S FF +   S+Y+R C   +     GG   +      +   GLD 
Sbjct: 33  TSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDA 92

Query: 129 SVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS 188
           SVIE+FP F YS VK L+IGK ALEC VCL+EFEDDETLRL+P+C HVFHP CID WL S
Sbjct: 93  SVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRS 152

Query: 189 HVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQ--SNSD 246
             TCP+CRANL P   E V   +    + +T  NS         R  ID N ++  ++ D
Sbjct: 153 QTTCPLCRANLVPVPGESVS-SEIPGLARETGQNSL--------RTPIDDNRKRVLTSPD 203

Query: 247 AQALE-ITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRK 305
            + ++ +    +   P ++      + E +  + S G        +++RYTLR P E+  
Sbjct: 204 ERLIDSVAWTGNQSMPRKSMSTGWKLAELYSPASSPGQ----PEENLDRYTLRLPQEIHD 259

Query: 306 QLMTRGKLKRTASFNAVLAMEGSSRKG--GGGEGSSRGRNYVDR--QGGRSDRWVFSMTP 361
           QL+     K+ +     L  E SS +G   G  G+ +   Y +R  Q GR DR  FS+TP
Sbjct: 260 QLVNSSLGKQGSKGQLALPQERSSVRGFRTGSLGTEKNYFYFERFDQDGRLDRRPFSITP 319

Query: 362 PFVSKMGFVKVGGEGMGLGDGWNSNG---RNLLTAVKSPLNCLNVKIGQGGESS 412
           P+ ++   ++   E +     +       + LL A++SP + L       GE S
Sbjct: 320 PYHTRS--IQSPDEIINASGNYQDRAGAPKGLLLAIRSPFDRLFTGKKNAGERS 371

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 38/268 (14%)

Query: 75  DPSMAIIILVLISTFFIVAMFSIYVRHC------------SDSRAQGGVLPSRALAGLSR 122
           DP + +I ++ +  FF+V   SI+ R              +D+ A+  V+  R L     
Sbjct: 49  DPVVVVITVLFLVIFFMV-FGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTA--- 104

Query: 123 NRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCI 182
            RGLD   IE+FP F+YS VK ++IGKG +ECAVCL EFEDDETLRL+P C HVFH  C+
Sbjct: 105 -RGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCV 163

Query: 183 DVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQ 242
           DVWL+ H TCP+CRA+L    N++    DS    + T   + S  +  +   V++     
Sbjct: 164 DVWLSEHSTCPLCRADLV--LNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLE----- 216

Query: 243 SNSDAQALE-ITNAASHVTPMRNRPPRLGMPE------RFPRSHSTGHSLVLAGVSVERY 295
            +SDA  L+ +T + S++TP   R    G+         FPRSHSTGHSL+    +++R+
Sbjct: 217 -SSDAHLLDAVTWSNSNITP---RSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNLDRF 272

Query: 296 TLRFPDEVRKQLMTRGKLKRTASFNAVL 323
           TLR PD+VR+QLM   K  RT    A+L
Sbjct: 273 TLRLPDDVRRQLM---KTSRTMGHVALL 297

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana GN=ATL36 PE=3 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 163/297 (54%), Gaps = 35/297 (11%)

Query: 79  AIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFV 138
           +II +V+++ F  + M S  + HC   R + G      L   +R RGL+  VIESFP F+
Sbjct: 50  SIIAIVVLAIFISLGMVSCCL-HCIFYREEIGAAGQDVLHSRAR-RGLEKEVIESFPTFL 107

Query: 139 YSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRAN 198
           YS VK LKIGKG +ECA+CLSEFED ETLR +P C H FH +CIDVWL+S  TCPVCRAN
Sbjct: 108 YSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRAN 167

Query: 199 LTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASH 258
           L+ +  E     + + E+                  V  +  E+S +       + +   
Sbjct: 168 LSLKPGESYPYLNMDVETG----------------GVQKLPNERSLTGNSVTTRSRSTGL 211

Query: 259 VTPMRNRPPRLGMPERF-PRSHSTGHSLVLA-GVSVERYTLRFPDEVRKQLMTRGKLKRT 316
           ++  R       M E F PRSHSTGHSLV   G +++R+TL+ P+EV++QL++   ++R+
Sbjct: 212 LSSWR-------MAEIFVPRSHSTGHSLVQQLGENLDRFTLQLPEEVQRQLVSLNLIRRS 264

Query: 317 ASFNAVLAMEGSSRKG--GGGEGSSRGRNYVDRQGGRSDRWVFSMTPPFVSKMGFVK 371
              + VL    SSR+G   G  GS RG      QG ++ R   SM+  F  +   V+
Sbjct: 265 ---HIVLPQAVSSRQGYRSGSVGSERGGF---SQGRQTHRRALSMSFSFSFQTASVR 315

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana GN=ATL37 PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/274 (40%), Positives = 151/274 (55%), Gaps = 37/274 (13%)

Query: 102 CSDSRAQGG--VLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLS 159
           C +    GG  VL SR        RG+D  VIESFP F+YS VK  KIG G +ECA+CL 
Sbjct: 72  CIEENETGGHEVLHSRV------RRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLC 125

Query: 160 EFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQT 219
           EFED+E LR +P C H FH +CID WL+S  TCPVCRANL+ +S +              
Sbjct: 126 EFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFP----------- 174

Query: 220 HNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRL----GMPERF 275
            + S    +G   R V +   E+S + + ++   N A++ TP R+R   L     +PE F
Sbjct: 175 -HPSMDVETGNAQRGVQESPDERSLTGS-SVTCNNNANYTTP-RSRSTGLLSSWHVPELF 231

Query: 276 -PRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKGG- 333
            PRSHSTGHSLV    +++R+TL+ P+EV++QL++   +KR+   +  L    SSR+G  
Sbjct: 232 LPRSHSTGHSLVQPCQNIDRFTLQLPEEVQRQLVSLNLIKRS---HIALPRARSSRQGYR 288

Query: 334 ----GGE--GSSRGRNYVDRQGGRSDRWVFSMTP 361
               G E  G S+GR  + R    S  + F   P
Sbjct: 289 SGSVGNERTGFSQGRQTLRRAISTSLSFSFQPAP 322

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1

 Score =  159 bits (401), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 166/321 (51%), Gaps = 37/321 (11%)

Query: 40  HVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSM--AIIILVLIST--FFIVAMF 95
           HV +LLLL   +      +T T PP      Y    P+   A+II +L+ T  F ++A  
Sbjct: 13  HVIFLLLLVLQVSGQHQPRT-TAPP------YIAQRPNQVPAVIIAMLMFTLLFSMLACC 65

Query: 96  SIYVR-----HCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKG 150
             Y       H + S  + G     A    + +RGL   VI SFP F+YS VK LKIGKG
Sbjct: 66  VCYKYTNTSPHGTSSDTEEGGHGEVAFTRRT-SRGLGKDVINSFPSFLYSQVKGLKIGKG 124

Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLC 210
            +ECA+CL+EFED+ETLRL+P C H FH  CIDVWL+S  TCPVCRA+L P+        
Sbjct: 125 GVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGS----- 179

Query: 211 DSNNESN--QTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPR 268
           D N+     + H+N   +L    +R  +  + +    D   L  +N     TP R+R   
Sbjct: 180 DQNSLYPFIRPHDNQDMDLENVTARRSVLESPDVRLLD--RLSWSNNTGANTPPRSRSTG 237

Query: 269 LG----MPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKL--KRTASFNAV 322
           L         FPRSHSTGHSLV    +++R+TL+ P+EVR+QL     L   R++     
Sbjct: 238 LSNWRITELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQLSHMKTLPQARSSREGYR 297

Query: 323 LAMEGSSRKGGG-----GEGS 338
               GS R+G G     GEGS
Sbjct: 298 SGSVGSERRGKGKEKEFGEGS 318

Arabidopsis thaliana (taxid: 3702)

>sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3 SV=1

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 147/295 (49%), Gaps = 31/295 (10%)

Query: 64  PANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCS-DSRAQGGVL---------- 112
           P  P   Y T  P + +I+ V++  FF +  F++Y   C  D+  Q   L          
Sbjct: 11  PQPPQQHYVT--PPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDN 68

Query: 113 PSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPK 172
           P +       N GL+  +I SFP F YS+VKDL+  K  LECA+CL EF+ D  LRLL  
Sbjct: 69  PLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTT 128

Query: 173 CDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQS 232
           C HVFH  CID+W  SH TCPVCR +L P    +    ++    ++   +   E S ++ 
Sbjct: 129 CYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPE----NTKPTVDEMIIDVIQETSDDEE 184

Query: 233 RAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSV 292
               D + +Q+ +       +   S +   +N      +PE+F RSHSTGHS+V      
Sbjct: 185 D---DHHRQQTTTQIDTWPSSGQTSSIKKEQN------LPEKFSRSHSTGHSIVRNKPEE 235

Query: 293 E-RYTLRFPDEVRKQLMTRG--KLKRTASFNAVLAMEG-SSRKGGGGEGSSRGRN 343
           E +YTLR P+ V+ ++ TRG  + +   +F  ++   G   R+ G   G ++ +N
Sbjct: 236 EDKYTLRLPEHVKIKV-TRGHSQTESCVTFAELIRNRGYDHRRFGEVSGQTQSKN 289

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
225451024	420	PREDICTED: E3 ubiquitin-protein ligase A	0.827	0.823	0.468	1e-75
449442843	379	PREDICTED: E3 ubiquitin-protein ligase A	0.801	0.883	0.469	8e-75
28558782	379	RING/c3HC4/PHD zinc finger-like protein	0.767	0.846	0.474	7e-74
224125338	337	predicted protein [Populus trichocarpa]	0.672	0.833	0.503	7e-72
357441591	373	RING finger family protein [Medicago tru	0.765	0.857	0.482	2e-71
224130990	374	predicted protein [Populus trichocarpa]	0.674	0.754	0.507	8e-70
296088297	443	unnamed protein product [Vitis vinifera]	0.741	0.699	0.447	2e-69
255542560	380	ring finger protein, putative [Ricinus c	0.755	0.831	0.470	3e-69
356573020	375	PREDICTED: E3 ubiquitin-protein ligase A	0.770	0.858	0.476	3e-68
356504060	366	PREDICTED: E3 ubiquitin-protein ligase A	0.760	0.868	0.479	2e-67

>gi|225451024|ref|XP_002284899.1| PREDICTED: E3 ubiquitin-protein ligase ATL6 isoform 1 [Vitis vinifera] gi|147843962|emb|CAN83712.1| hypothetical protein VITISV_011102 [Vitis vinifera]

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/378 (46%), Positives = 231/378 (61%), Gaps = 32/378 (8%)

Query: 11  SLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGL 70
           S++   R+   L+  ++RF  F+      H T  L +   L  +A AQ+ T   +N    
Sbjct: 5   SVSQANRNGATLVCGLLRFGGFS-----QHGTVSLWILLLLLPFAGAQSDT---SNDPYQ 56

Query: 71  YTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNR----GL 126
                 SMAIII++L++  F++  FS+Y+RHCSDSR  GG + + A A L R+R    GL
Sbjct: 57  QQRFSSSMAIIIVILVAALFLMGFFSVYIRHCSDSR-NGGSIRAAAGAALGRSRRGTRGL 115

Query: 127 DPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL 186
           D +V+E+FP F YS VK LKIGKG LECAVCL+EFED+ETLRL+PKCDHVFHP CID WL
Sbjct: 116 DQAVLETFPTFEYSVVKGLKIGKGVLECAVCLNEFEDNETLRLIPKCDHVFHPECIDAWL 175

Query: 187 ASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSD 246
           ASHVTCPVCRANLT    E     D +       +   S+  GE  R+ I+   E S   
Sbjct: 176 ASHVTCPVCRANLT----EPAVPTDYSAAVEAAESAGESDHDGEDRRSEINAVREVSIRV 231

Query: 247 A-QALEITNAASHVTP----MRNRPPRLG--MPERFPRSHSTGHSLVLAGVSVERYTLRF 299
           A    ++  A   + P     +NRPPR     P +FPRSHSTGHSL+  G + ER+TL+ 
Sbjct: 232 ADDETDVQQAPDVINPNQSLHQNRPPRSKSTRPRKFPRSHSTGHSLIQPGENCERFTLKL 291

Query: 300 PDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG--GGGEGSSRGRNY--VDR--QGGRSD 353
           P++VRKQ+M R  L RT S   VL  +GSSR+G    GEGSSRG+N+   DR  + G+SD
Sbjct: 292 PEDVRKQIMKRA-LNRTTSL-LVLPRDGSSRQGYRTAGEGSSRGKNFRRFDRLERSGKSD 349

Query: 354 RWVFSMTPPFVSKMGFVK 371
           RW FS+TPPF S+   +K
Sbjct: 350 RWTFSITPPFFSRASSLK 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442843|ref|XP_004139190.1| PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cucumis sativus] gi|449518671|ref|XP_004166360.1| PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cucumis sativus]

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 169/360 (46%), Positives = 217/360 (60%), Gaps = 25/360 (6%)

Query: 56  SAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSR 115
           SAQ+   P    D     L  SMA+II++LI+  F +A FS+Y+RHC+DS++   + P  
Sbjct: 25  SAQSQPSPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYIRHCNDSQSNT-IRPIT 83

Query: 116 ALAGLSR--NRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKC 173
             AG SR   RGLDP+VIE+FP  +YS VK+ KIGK ALECAVCL+EFEDDETLRL+PKC
Sbjct: 84  VAAGRSRRATRGLDPAVIETFPTLIYSDVKEHKIGKSALECAVCLNEFEDDETLRLIPKC 143

Query: 174 DHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSR 233
           DHVFHP CID WLASH TCPVCRANL+P+  E V   D +N    + +    ++  + + 
Sbjct: 144 DHVFHPECIDAWLASHSTCPVCRANLSPQLTESVHRVDDSNAVVNS-DTDGGDIEAQSTD 202

Query: 234 AVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPER----FPRSHSTGHSLVLAG 289
            V++     +       E+T    +    R R  R     R    FPRSHSTGHSLV  G
Sbjct: 203 VVLETTAPPTVQIQTESELTTTTGNKALNRTR-TRGSRSNRLRWLFPRSHSTGHSLVQPG 261

Query: 290 VSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG---GGGEGSSRGRNY-- 344
              ER+TLR P E+RKQ++ R KL R  S   VLA + SS +G   G GEGSSRG+ Y  
Sbjct: 262 EDTERFTLRLPVEIRKQVVNR-KLNRAMSM-VVLARQSSSMRGYRFGSGEGSSRGKYYRR 319

Query: 345 ---VDRQGGRSDRWVFSMTPPFVSKMGFVKVGGEGMGLGDGWNSNGRNL---LTAVKSPL 398
              +DR   +SDRWV SMTPPF ++M  +K    G   G+    +GR L    TAV+S +
Sbjct: 320 LERLDRT-SKSDRWVLSMTPPFFTRMSSMKTPRGGSNRGEP--GSGRELGQGNTAVESSM 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28558782|gb|AAO45753.1| RING/c3HC4/PHD zinc finger-like protein [Cucumis melo subsp. melo]

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 166/350 (47%), Positives = 207/350 (59%), Gaps = 29/350 (8%)

Query: 56  SAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSR 115
           SAQ    P    D     L  SMA+II++LI+  F +A FS+Y+RHC+DS     V P  
Sbjct: 25  SAQFQPAPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYIRHCNDS-PSNTVRPIT 83

Query: 116 ALAGLSR--NRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKC 173
           A AG SR   RGLDP+VIE+FP  +YS VK+ KIGK ALECAVCL+EFEDDETLRL+PKC
Sbjct: 84  AAAGRSRRATRGLDPAVIETFPTLIYSDVKEHKIGKSALECAVCLNEFEDDETLRLIPKC 143

Query: 174 DHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSR 233
           DHVFHP CID WLASH TCPVCRANL+P+  + V   D +N    + +    ++  + + 
Sbjct: 144 DHVFHPECIDAWLASHSTCPVCRANLSPQPTDSVHRADDSNAVVNS-DTDGGDIEAQSND 202

Query: 234 AVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPER----FPRSHSTGHSLVLAG 289
            V +     +       E++   S+    R R  R     R    FPRSHSTGHSLV  G
Sbjct: 203 VVSETTAPPTVQIQTESELSTTTSNKALNRTR-TRGSRSNRLRWLFPRSHSTGHSLVQPG 261

Query: 290 VSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG---GGGEGSSRGRNY-- 344
              ER+TLR P E+RKQ++ R KL R  S   VLA + SS +G   G GEGSSRG+ Y  
Sbjct: 262 EDTERFTLRLPVEIRKQVVNR-KLHRATSM-VVLARQSSSMRGYRFGSGEGSSRGKYYRR 319

Query: 345 ---VDRQGGRSDRWVFSMTPPFVSKMGFVKV---------GGEGMGLGDG 382
              +DR   +SDRWV SMTPPF ++M  +K           G G  LG G
Sbjct: 320 LERLDRT-SKSDRWVLSMTPPFFTRMSSMKTPRGGSNRAEPGSGRELGQG 368

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125338|ref|XP_002319561.1| predicted protein [Populus trichocarpa] gi|222857937|gb|EEE95484.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 160/318 (50%), Positives = 198/318 (62%), Gaps = 37/318 (11%)

Query: 71  YTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALA--GLSR----NR 124
           Y  + PSMAIII+VL++  F +  FSIY+RHC+++ A G +   RAL   GLSR    +R
Sbjct: 31  YAQVTPSMAIIIVVLVAALFSMGFFSIYIRHCNEASANGSI---RALGVVGLSRRAAASR 87

Query: 125 GLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDV 184
           GLDP VIE+FP  +YS VK LKIGKGALECAVCL+EFEDDETLRL+P CDHVFHP CID 
Sbjct: 88  GLDPGVIETFPTLIYSVVKGLKIGKGALECAVCLNEFEDDETLRLIPNCDHVFHPDCIDA 147

Query: 185 WLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSN 244
           WL SH TCPVCRA+LT       K  D+ ++ ++ H   + EL  E     + I  E  N
Sbjct: 148 WLESHTTCPVCRADLT-------KPADTVSQLSELH---SPELDLEAQNGALGIEPENGN 197

Query: 245 SDAQALEI--------TNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYT 296
           ++ +   +         N    +   R R  R G P RFPRSHSTGHSLV  G + +R+T
Sbjct: 198 ANVEVQVVGPEPDDVSVNVNKTLNRNRTRGSRSGRPPRFPRSHSTGHSLVQPGENTDRFT 257

Query: 297 LRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG---GGGEGSSRG-RNYVDRQG--- 349
           LR P EVRKQ+M R KL R+ S   VL  +GSSRKG   G GEGSSR   NY   +    
Sbjct: 258 LRLPVEVRKQVMNR-KLNRSTSM-VVLPRQGSSRKGYRTGVGEGSSRKVLNYKRLEKLDL 315

Query: 350 -GRSDRWVFSMTPPFVSK 366
             RSDRWVF   P F+++
Sbjct: 316 EPRSDRWVFGRNPSFLAR 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441591|ref|XP_003591073.1| RING finger family protein [Medicago truncatula] gi|355480121|gb|AES61324.1| RING finger family protein [Medicago truncatula] gi|388512099|gb|AFK44111.1| unknown [Medicago truncatula]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/338 (48%), Positives = 200/338 (59%), Gaps = 18/338 (5%)

Query: 54  YASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLP 113
           +A AQT      N +  Y  + PSMAIII++L++  F++  FSIY+R C DS +      
Sbjct: 27  FAGAQTNDN--TNDNSYYNRVSPSMAIIIVILVAALFLMGFFSIYIRRCGDSPSNSIRNM 84

Query: 114 SRALAGLSRN--RGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLP 171
           +  LAG SR   RGLD SVI +FPIF YS VK  KIGKGALECAVCL+EFE+ ETLRL+P
Sbjct: 85  AGGLAGRSRRAARGLDASVIATFPIFEYSTVKIHKIGKGALECAVCLNEFEESETLRLIP 144

Query: 172 KCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQ--THNNSASELSG 229
           KCDHVFHP CID WL SH TCPVCRANL P+  E V    S N   Q     N A E   
Sbjct: 145 KCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPSINTEPQDIEAQNDAVESVH 204

Query: 230 EQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAG 289
           E   A   +       D    E+   +  +   R R  + G P  F RSHSTGHSLV  G
Sbjct: 205 EHQNADGSV-----KVDPTEPEVLTVSQTLNRNRTRGSQSGRPRWFQRSHSTGHSLVQPG 259

Query: 290 VSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG---GGGEGSSRGRNY-- 344
            + ER+TLR P EVRKQ++   +L R  S   VL  E SSR+G   GGGEGSSRG++   
Sbjct: 260 ENTERFTLRLPVEVRKQILQNPELHRARSL-VVLPRETSSRRGYRTGGGEGSSRGKSVRR 318

Query: 345 VDRQGGRSDRWVFSMTPPFVSKMGFVKVGGEGMGLGDG 382
           +DR G  SDRWVF+M PPF+ +   ++        G+G
Sbjct: 319 LDR-GLLSDRWVFTMAPPFLVRASSMRSPRVASSAGEG 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130990|ref|XP_002328426.1| predicted protein [Populus trichocarpa] gi|222838141|gb|EEE76506.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 160/315 (50%), Positives = 200/315 (63%), Gaps = 33/315 (10%)

Query: 71  YTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSR----NRGL 126
           Y  + PSMAIII+VLI+  FI+  FSIY+RHC+++   G + P   + GLSR    +RGL
Sbjct: 32  YARVTPSMAIIIVVLIAVLFIMGFFSIYIRHCNEANGNGSIRP-LGMGGLSRRVAASRGL 90

Query: 127 DPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL 186
           DP+VIE+FP  +YS VK LKIGKGALECAVCL+EFE+DETLRL+P CDHVFHP CI  WL
Sbjct: 91  DPAVIETFPTLIYSVVKGLKIGKGALECAVCLNEFEEDETLRLIPNCDHVFHPDCIGAWL 150

Query: 187 ASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGE-QSRAVIDINGEQSNS 245
            SH TCPVCRA+LT       K  DS  +  ++H+    EL  E Q+ AV+D   E  N+
Sbjct: 151 ESHTTCPVCRADLT-------KPADSVPQLGESHD---PELDLEAQNGAVMD-EPENGNA 199

Query: 246 DAQAL----EITNAASHVTPMRNRP--PRLGMPERFPRSHSTGHSLVLAGVSVERYTLRF 299
           + + +    E+  A+   T  RNR    R G P RF RSHSTGHS+V  G + +R+TLR 
Sbjct: 200 NVEVVGPEPEVMGASVVKTLNRNRTRGSRSGRPLRFTRSHSTGHSVVQPGENTDRFTLRL 259

Query: 300 PDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG---GGGEGSSRGRNYVDR-----QGGR 351
           P EVRKQ+M R KL R  S   VL+ +GSS KG   G GEGS R      R     Q  R
Sbjct: 260 PVEVRKQVMNR-KLNRAMSM-VVLSRQGSSVKGNKNGVGEGSPRKVLNYKRLEKLDQEAR 317

Query: 352 SDRWVFSMTPPFVSK 366
           SDRWVFS  P  +++
Sbjct: 318 SDRWVFSRNPSLLAR 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088297|emb|CBI36742.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 215/371 (57%), Gaps = 61/371 (16%)

Query: 11  SLASRIRSDFHLILMIMRFENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGL 70
           S++   R+   L+  ++RF  F+      H T  L +   L  +A AQ+ T   +N    
Sbjct: 33  SVSQANRNGATLVCGLLRFGGFSQ-----HGTVSLWILLLLLPFAGAQSDT---SNDPYQ 84

Query: 71  YTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNR----GL 126
                 SMAIII++L++  F++  FS+Y+RHCSDSR  GG + + A A L R+R    GL
Sbjct: 85  QQRFSSSMAIIIVILVAALFLMGFFSVYIRHCSDSR-NGGSIRAAAGAALGRSRRGTRGL 143

Query: 127 DPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL 186
           D +V+E+FP F YS VK LKIGKG LECAVCL+EFED+ETLRL+PKCDHVFHP CID WL
Sbjct: 144 DQAVLETFPTFEYSVVKGLKIGKGVLECAVCLNEFEDNETLRLIPKCDHVFHPECIDAWL 203

Query: 187 ASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSD 246
           ASHVTCPVCRANLT    E     D +       +   S+  GE  R+ I+         
Sbjct: 204 ASHVTCPVCRANLT----EPAVPTDYSAAVEAAESAGESDHDGEDRRSEINA-------- 251

Query: 247 AQALEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQ 306
                                       FPRSHSTGHSL+  G + ER+TL+ P++VRKQ
Sbjct: 252 ----------------------------FPRSHSTGHSLIQPGENCERFTLKLPEDVRKQ 283

Query: 307 LMTRGKLKRTASFNAVLAMEGSSRKG--GGGEGSSRGRNY--VDR--QGGRSDRWVFSMT 360
           +M R  L RT S   VL  +GSSR+G    GEGSSRG+N+   DR  + G+SDRW FS+T
Sbjct: 284 IMKRA-LNRTTSL-LVLPRDGSSRQGYRTAGEGSSRGKNFRRFDRLERSGKSDRWTFSIT 341

Query: 361 PPFVSKMGFVK 371
           PPF S+   +K
Sbjct: 342 PPFFSRASSLK 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542560|ref|XP_002512343.1| ring finger protein, putative [Ricinus communis] gi|223548304|gb|EEF49795.1| ring finger protein, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/344 (47%), Positives = 217/344 (63%), Gaps = 28/344 (8%)

Query: 38  IIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSI 97
           +I +  +LL  P     A AQ       +P G Y  + PSMAIII+VLI+  F +  FS+
Sbjct: 8   LISIFTILLASPFT---ALAQPSPAEARDPYG-YARVTPSMAIIIVVLIAALFFMGFFSV 63

Query: 98  YVRHCSDSR---AQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALEC 154
           Y+RHC++S    +  G+         +  RGLD +VIE+FP  VYS VK LKIGKGALEC
Sbjct: 64  YIRHCANSSNGVSVQGLANGGRSRRAAAARGLDAAVIETFPTLVYSEVKGLKIGKGALEC 123

Query: 155 AVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNN 214
           AVCL EFEDDETLRLLPKCDHVFHP CID WLASH TCPVCR+NLTP+        D   
Sbjct: 124 AVCLCEFEDDETLRLLPKCDHVFHPDCIDAWLASHTTCPVCRSNLTPQP------VDPPT 177

Query: 215 ESNQTHNNSASELSGEQSRAVIDINGE-QSNSDAQAL-----EITNAASHVTPMRNRPPR 268
           ++ ++  +S+S+L   Q+ AV+++  + +   +AQ       E+ +    +   R R  R
Sbjct: 178 QTTESLPDSSSDLEA-QNEAVVELEPQPEVCENAQVAVAPEPEVMSVNQTLNRNRTRGSR 236

Query: 269 LGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGS 328
            G P +FPRSHSTGHSL+  G + +R+TLR P EVRKQ+M R +L RT S   V + E S
Sbjct: 237 SGRPSKFPRSHSTGHSLIQPGENTDRFTLRLPVEVRKQIMNR-ELNRTMSM-VVFSRERS 294

Query: 329 SRKG---GGGEGSSRGR-NYVDR--QGGRSDRWVFSMTPPFVSK 366
           S++G   GGGEGSSRG+   ++R  QG +SDR V++ TP F+++
Sbjct: 295 SKRGYKTGGGEGSSRGKYKRLERLDQGAKSDRLVYNRTPSFLAR 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573020|ref|XP_003554663.1| PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Glycine max]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 160/336 (47%), Positives = 201/336 (59%), Gaps = 14/336 (4%)

Query: 39  IHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIY 98
           IH+   LLL   L   A AQ  +QP    D       PS+AIII++L++  F++A FSIY
Sbjct: 5   IHIALFLLLVSPLIPIAVAQAQSQPNDFSDANLNQFSPSIAIIIVILVAALFLMAFFSIY 64

Query: 99  VRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCL 158
           VRHC+DS     V P          RGLDP+VI++FPI  YS VK  KIGK ALECAVCL
Sbjct: 65  VRHCADS-PSTTVSPLTTARSRRAARGLDPAVIQTFPILEYSEVKIHKIGKEALECAVCL 123

Query: 159 SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQ 218
            EFED ETLRL+PKCDHVFHP CID WL SH TCPVCRANL P  +E      + N    
Sbjct: 124 CEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPTDSEDAIANGNANGVVP 183

Query: 219 THNNSASELSGEQSRAVIDINGEQSNSDAQAL----EITNAASHVTPMRNRPPRLGMPER 274
                  ++  +     ++   EQ N++A  +    E+ +    +   R R  R   P R
Sbjct: 184 VPETFTRDIEAQND--AVEAAPEQQNAEADPVLPEPEVVSLDKTLNRNRTRGSRSNRPRR 241

Query: 275 FPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG-- 332
           FPRSHSTGHSLV  G + +R+TLR P EVRKQL+ R +L+R +S   VL  EGS R+G  
Sbjct: 242 FPRSHSTGHSLVQPGENTDRFTLRLPLEVRKQLINR-QLQRASSL-IVLPREGSLRQGYR 299

Query: 333 GGGEGSSRGR--NYVDRQGGRSDRWVFSMTPPFVSK 366
            GGEGSSRG+    +DR   +SDRW+FSM  PF ++
Sbjct: 300 TGGEGSSRGKISRRLDR-SLKSDRWIFSMAAPFFAR 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504060|ref|XP_003520817.1| PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Glycine max]

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 161/336 (47%), Positives = 203/336 (60%), Gaps = 18/336 (5%)

Query: 39  IHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIY 98
           +     LLL   L   A    V QP    D      + S+AIII++L+  FF++A FSIY
Sbjct: 1   MKTVLFLLLVSALIPIA----VAQPNDFSDANLNEFNSSVAIIIIILVVAFFLMAFFSIY 56

Query: 99  VRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCL 158
           VRHC+DS     V P          RGLDP++I++FPI  YS VK  KIGK ALECAVCL
Sbjct: 57  VRHCADS-PSNTVRPLTTARSRRAARGLDPALIQTFPILEYSVVKIHKIGKEALECAVCL 115

Query: 159 SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQ 218
            EFED ETLRLLPKCDHVFHP CID WL+SH TCPVCRANL P  +E   + ++N     
Sbjct: 116 CEFEDTETLRLLPKCDHVFHPECIDEWLSSHTTCPVCRANLLPTESEDA-IANANANGVV 174

Query: 219 THNNSASELSGEQSRAVIDINGEQSNSDAQAL----EITNAASHVTPMRNRPPRLGMPER 274
               + +     Q+ AV     EQ N++A  +    E+ +    +   R R  R   P R
Sbjct: 175 PVPETLTRDIESQNDAV-QAAPEQQNAEADPVLPEPEVVSLDKTLNRNRTRGSRSNRPRR 233

Query: 275 FPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMEGSSRKG-- 332
           FPRSHSTGHSLV  G + +R+TL+ P EVRKQL+ R +L+R +S   VL  EGSSR+G  
Sbjct: 234 FPRSHSTGHSLVQPGENTDRFTLKLPLEVRKQLINR-QLQRASSL-IVLPREGSSRQGYR 291

Query: 333 GGGEGSSRGR--NYVDRQGGRSDRWVFSMTPPFVSK 366
            GGEGSSRG+    +DR   +SDRW+FSMT PF ++
Sbjct: 292 TGGEGSSRGKISRRLDR-SLKSDRWIFSMTAPFFAR 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
TAIR|locus:2096309	398	ATL6 "Arabidopsis toxicos en l	0.624	0.655	0.456	3.8e-53
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.411	0.532	0.489	1.4e-52
TAIR|locus:2207026	404	AT1G72200 [Arabidopsis thalian	0.813	0.841	0.365	2e-49
TAIR|locus:2146330	368	CNI1 "carbon/nitrogen insensit	0.430	0.489	0.467	1.6e-45
TAIR|locus:2044757	378	ATL9 "Arabidopsis toxicos en l	0.648	0.716	0.403	7.1e-45
TAIR|locus:2009527	381	ATL15 "Arabidopsis toxicos en	0.779	0.855	0.344	4.5e-43
TAIR|locus:2122363	345	AT4G09120 [Arabidopsis thalian	0.409	0.495	0.440	2e-41
TAIR|locus:2122378	357	AT4G09130 [Arabidopsis thalian	0.521	0.610	0.414	1.8e-39
TAIR|locus:2206722	327	AT1G35330 [Arabidopsis thalian	0.605	0.773	0.402	3.4e-38
TAIR|locus:2044742	302	AT2G34990 [Arabidopsis thalian	0.337	0.466	0.409	1.2e-35

TAIR|locus:2096309 ATL6 "Arabidopsis toxicos en levadura 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 131/287 (45%), Positives = 173/287 (60%)

Query:    38 IIHVTWLLLLWPTLYDYASAQTVTQP-PANPDGLYTTLDPSMAIIILVLISTFFIVAMFS 96
             ++ + +LL+L  +  D A++Q+  QP P N    Y  L P+MA+I+++LI+  F +  FS
Sbjct:    12 VLPIVFLLIL--SSADLAASQS--QPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFS 67

Query:    97 IYVRHCSDSRAQGGVLP-----SRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGA 151
             IY RHCS      GV P     SRA    +  RGLD SV+E+FP F+YS VK  K+GKG 
Sbjct:    68 IYFRHCSGV-PDAGVSPAGGARSRATVNAAA-RGLDVSVVETFPTFLYSDVKTQKLGKGE 125

Query:   152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
             LECA+CL+EFEDDETLRLLPKCDHVFHPHCID WL +HVTCPVCRANL     E+V    
Sbjct:   126 LECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA----EQV---- 177

Query:   212 SNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPRLGM 271
             +  ES +      +E   E  + V++     +    + L  +   S   P    P  L  
Sbjct:   178 AEGESVEP---GGTEPDLELQQVVVNPEPVVTAPVPEQLVTSEVDSRRLP--GVPVDLKR 232

Query:   272 PERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTAS 318
               +F RSH+TGHS+V  G   ER+TLR P++VRK++M   KL RT S
Sbjct:   233 V-KFSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNS 278

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 90/184 (48%), Positives = 119/184 (64%)

Query:    25 MIMRFENFNPSRWII-HVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIIL 83
             M+ R E FNP RWII HV  ++         A+AQ+ +  P+ PD L T   PS   +  
Sbjct:     1 MMTRVECFNPHRWIILHVAIII------QSKANAQSFS--PSPPD-LQTGHTPSKTTVFA 51

Query:    84 VLISTFFIVAMFSIYVRHCSDSRAQGGV--LPSRALAGLSRNRGLDPSVIESFPIFVYSA 141
             VL++ FF+  + S+Y+RHC+ S          +RA  G SR  GLD +V+ESFP+F YS+
Sbjct:    52 VLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSS 111

Query:   142 VKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201
             VK+ KIG   LECA+CL+E ED ET+RLLP C+H+FH  CID WL SH TCPVCR+NLT 
Sbjct:   112 VKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTA 171

Query:   202 ESNE 205
             +SN+
Sbjct:   172 KSNK 175

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2207026 AT1G72200 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 137/375 (36%), Positives = 200/375 (53%)

Query:    52 YDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGV 111
             + + + Q  T   ++  G  +  DP+MAI+++VL+S FF +  FS+Y+R C + R  G  
Sbjct:    38 FKFVAGQA-THGGSDVSGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLE-RVMGMD 95

Query:   112 L--PSRALAGLSRNR----GLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDE 165
                P+ A   L+ NR    GLD S+IE+FP F YS VK L+IGK ALEC+VCL+EFEDDE
Sbjct:    96 YGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDE 155

Query:   166 TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSAS 225
             TLRL+PKC HVFHP CID WL SH TCP+CRA+L P   E +    S       ++   S
Sbjct:   156 TLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIV---SIQIPGLVNDPPGS 212

Query:   226 ELSGEQSRAVIDINGEQSNSDAQALE-ITNAASHVTPMRNRPPRLGMPERFPRSHSTG-H 283
             + +G++ R++        + DA+ +E +    +   P R+      +   F  S  TG H
Sbjct:   213 DPNGDRIRSL-------GSPDARLIESVALTCNQSMPRRSMSTGWNLAGMFTNSDRTGQH 265

Query:   284 SLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRTASFNAVLAMXXXXXXXXXXXXXXXXXN 343
             S      +++R+TLR P ++  +L+     K   +   V  M                  
Sbjct:   266 S-----ENLDRFTLRLPQDIHNKLVNPNLSKVHVALPQV--MSSTRGYRTGSLGSERNYF 318

Query:   344 YVDR--QGGRSDRWVFSMTPPF-VSKMGFVKVGGEGMGLGDGWN-SNGRNLLTAVKSPLN 399
             Y +R  Q GR DR  FS+TPP+  S +  +  GG G   GD    S+ ++LL A++SP +
Sbjct:   319 YYERFDQDGRLDRRPFSITPPYRTSSINHMSPGGSG---GDKVRASSPKSLLLAMRSPFD 375

Query:   400 CLNV-KIGQGGESSS 413
              L + K    GE+SS
Sbjct:   376 RLFLGKNNNVGENSS 390

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2146330 CNI1 "carbon/nitrogen insensitive 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 87/186 (46%), Positives = 122/186 (65%)

Query:    38 IIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYT-TLDPSMAIIILVLISTFFIVAMFS 96
             I H++  +L+   L   ++ Q  T    +    Y+ +L P+MA++++V+I+  F +  F+
Sbjct:     4 IKHISLPVLVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFT 63

Query:    97 IYVRHCSDSRAQGGVLPS----RALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGAL 152
             +Y+RHC+ +   G V P+    R +   +  RGLD   IE+FP FVYS VK  KIGKGAL
Sbjct:    64 VYIRHCTGA-VDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGAL 122

Query:   153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCDS 212
             ECA+CL+EFEDDETLRLLPKCDHVFHPHCI  WL  HVTCPVCR NL  ++ E   + ++
Sbjct:   123 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPEPEVVVET 182

Query:   213 NNESNQ 218
             + E+ Q
Sbjct:   183 DLEAQQ 188

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0043562 "cellular response to nitrogen levels" evidence=IMP

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2044757 ATL9 "Arabidopsis toxicos en levadura 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 124/307 (40%), Positives = 170/307 (55%)

Query:    35 SRWIIHVTWLLLLWPTLYD--YASAQTVTQPPANPDGLYTTLDPSMAIIILVLISTFFIV 92
             SRWI H    LLL   L    Y   QT T PP          DP + +I ++ +  FF+V
Sbjct:     9 SRWIPHNLLFLLLLLLLQSVPYGFGQTQTTPPGTTKTKPN--DPVVVVITVLFLVIFFMV 66

Query:    93 ----------AMFS-IYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSA 141
                       A FS   +   +D+ A+  V+  R L      RGLD   IE+FP F+YS 
Sbjct:    67 FGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTA----RGLDAEAIETFPTFLYSE 122

Query:   142 VKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201
             VK ++IGKG +ECAVCL EFEDDETLRL+P C HVFH  C+DVWL+ H TCP+CRA+L  
Sbjct:   123 VKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLV- 181

Query:   202 ESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALE-ITNAASHVT 260
               N++    DS    + T   + S  +  +   V++      +SDA  L+ +T + S++T
Sbjct:   182 -LNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLE------SSDAHLLDAVTWSNSNIT 234

Query:   261 PMRNRPPRLGMPE----RFPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTRGKLKRT 316
             P R++   L   +     FPRSHSTGHSL+    +++R+TLR PD+VR+QLM   K  RT
Sbjct:   235 P-RSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQLM---KTSRT 290

Query:   317 ASFNAVL 323
                 A+L
Sbjct:   291 MGHVALL 297

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2009527 ATL15 "Arabidopsis toxicos en levadura 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 122/354 (34%), Positives = 174/354 (49%)

Query:    72 TTLDPSMAIIILVLISTFFIVAMFSIYVRHCSDSRA--QGGVLPSRAL-AGLSRNRGLDP 128
             T+  P+ AII++VL+S FF +   S+Y+R C         G  P   L    +   GLD 
Sbjct:    33 TSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDA 92

Query:   129 SVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS 188
             SVIE+FP F YS VK L+IGK ALEC VCL+EFEDDETLRL+P+C HVFHP CID WL S
Sbjct:    93 SVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRS 152

Query:   189 HVTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQ--SNSD 246
               TCP+CRANL P   E V   +    + +T  NS         R  ID N ++  ++ D
Sbjct:   153 QTTCPLCRANLVPVPGESVS-SEIPGLARETGQNSL--------RTPIDDNRKRVLTSPD 203

Query:   247 AQALE-ITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVERYTLRFPDEVRK 305
              + ++ +    +   P ++      + E +  + S G        +++RYTLR P E+  
Sbjct:   204 ERLIDSVAWTGNQSMPRKSMSTGWKLAELYSPASSPGQP----EENLDRYTLRLPQEIHD 259

Query:   306 QLMTRGKLKRTASFNAVLAMXXXXXXXXXXXXXXXXXNYV--DR--QGGRSDRWVFSMTP 361
             QL+     K+ +     L                   NY   +R  Q GR DR  FS+TP
Sbjct:   260 QLVNSSLGKQGSKGQLALPQERSSVRGFRTGSLGTEKNYFYFERFDQDGRLDRRPFSITP 319

Query:   362 PFVSKMGFVKVGGEGMGLGDGWNSNG---RNLLTAVKSPLNCLNVKIGQGGESS 412
             P+ ++   ++   E +     +       + LL A++SP + L       GE S
Sbjct:   320 PYHTRS--IQSPDEIINASGNYQDRAGAPKGLLLAIRSPFDRLFTGKKNAGERS 371

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0033591 "response to L-ascorbic acid" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2122363 AT4G09120 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 78/177 (44%), Positives = 103/177 (58%)

Query:    29 FENFNPSRWIIHVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSMAIIILVLIST 88
             F  ++  R +  V   L L+  L  Y + Q  + P  +      + D  +AI++L +   
Sbjct:     4 FTRYHLPRVVSGVILPLFLFHLL-PYVTCQQESVPTNSIRQTNLSADSIIAIVVLAI--- 59

Query:    89 FFIVAMFSIYVRHCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIG 148
             F  + M S  + HC   R + G      L   +R RGL+  VIESFP F+YS VK LKIG
Sbjct:    60 FISLGMVSCCL-HCIFYREEIGAAGQDVLHSRAR-RGLEKEVIESFPTFLYSEVKGLKIG 117

Query:   149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNE 205
             KG +ECA+CLSEFED ETLR +P C H FH +CIDVWL+S  TCPVCRANL+ +  E
Sbjct:   118 KGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGE 174

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2122378 AT4G09130 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 102/246 (41%), Positives = 146/246 (59%)

Query:    79 AIIILVLISTFFIV-AMFSIYVRHCSDSRAQGG--VLPSRALAGLSRNRGLDPSVIESFP 135
             +II +VL+S F ++  ++ +    C +    GG  VL SR        RG+D  VIESFP
Sbjct:    48 SIIGIVLLSLFLLLLVVYCLNYGCCIEENETGGHEVLHSRV------RRGIDKDVIESFP 101

Query:   136 IFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195
              F+YS VK  KIG G +ECA+CL EFED+E LR +P C H FH +CID WL+S  TCPVC
Sbjct:   102 AFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVC 161

Query:   196 RANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNA 255
             RANL+ +S +              H +   E +G   R V +   E+S + + ++   N 
Sbjct:   162 RANLSLKSGDSFP-----------HPSMDVE-TGNAQRGVQESPDERSLTGS-SVTCNNN 208

Query:   256 ASHVTPMRNRPPRL----GMPERF-PRSHSTGHSLVLAGVSVERYTLRFPDEVRKQLMTR 310
             A++ TP R+R   L     +PE F PRSHSTGHSLV    +++R+TL+ P+EV++QL++ 
Sbjct:   209 ANYTTP-RSRSTGLLSSWHVPELFLPRSHSTGHSLVQPCQNIDRFTLQLPEEVQRQLVSL 267

Query:   311 GKLKRT 316
               +KR+
Sbjct:   268 NLIKRS 273

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2206722 AT1G35330 [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 114/283 (40%), Positives = 154/283 (54%)

Query:    40 HVTWLLLLWPTLYDYASAQTVTQPPANPDGLYTTLDPSM--AIIILVLIST--FFIVAMF 95
             HV +LLLL   +      +T T PP      Y    P+   A+II +L+ T  F ++A  
Sbjct:    13 HVIFLLLLVLQVSGQHQPRT-TAPP------YIAQRPNQVPAVIIAMLMFTLLFSMLACC 65

Query:    96 SIYVR-----HCSDSRAQGGVLPSRALAGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKG 150
               Y       H + S  + G     A    + +RGL   VI SFP F+YS VK LKIGKG
Sbjct:    66 VCYKYTNTSPHGTSSDTEEGGHGEVAFTRRT-SRGLGKDVINSFPSFLYSQVKGLKIGKG 124

Query:   151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLC 210
              +ECA+CL+EFED+ETLRL+P C H FH  CIDVWL+S  TCPVCRA+L P+        
Sbjct:   125 GVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGS----- 179

Query:   211 DSNN--ESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQALEITNAASHVTPMRNRPPR 268
             D N+     + H+N   +L    +R  +  + +    D   L  +N     TP R+R   
Sbjct:   180 DQNSLYPFIRPHDNQDMDLENVTARRSVLESPDVRLLDR--LSWSNNTGANTPPRSRSTG 237

Query:   269 LG---MPER-FPRSHSTGHSLVLAGVSVERYTLRFPDEVRKQL 307
             L    + E  FPRSHSTGHSLV    +++R+TL+ P+EVR+QL
Sbjct:   238 LSNWRITELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQL 280

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2044742 AT2G34990 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 61/149 (40%), Positives = 90/149 (60%)

Query:    80 IIILVLISTFFIVAMFSIYVRHCSDS-RAQGGVLPS-----RALAGLSRNRGLDPSVIES 133
             ++I +++   FIV + S+  R  S    +Q  + P       +   ++  RGLD ++I S
Sbjct:    16 LVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINS 75

Query:   134 FPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCP 193
             FP F+YS VK+ +IG G +ECAVC+ EFED ETLRL+P+C HVFH  C+ VWL+ H TCP
Sbjct:    76 FPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCP 135

Query:   194 VCRANLTPESNEKVKLCDSNN--ESNQTH 220
             +CR +L  +  E+  L    +  ES  +H
Sbjct:   136 LCRVDLCLQPGERSYLNPEPDLVESTNSH 164

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	6e-18
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-13
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	4e-10
smart00184	40	smart00184, RING, Ring finger	6e-09
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	8e-07
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	6e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	7e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	5e-05
pfam11793	70	pfam11793, FANCL_C, FANCL C-terminal domain	3e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	3e-04
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 76.7 bits (189), Expect = 6e-18
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197
           EC +CL EFE  E + +LP C HVFH  C+D WL S  TCP+CRA
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANL 199
           EC +CL EF +     +L  C HVF   CID WL S   TCP+CR  +
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 154 CAVCLSEFED---------DETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196
           CA+C + F+          D+   +  +C H FH HCI  WL +  TCP+CR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 77  SMAIIILVLISTFFIVAMFSIYVRHCSDSRAQGGVLPSRALAGL---SRNRGLDPSVIES 133
             +    V+        +  +++     SR    +L  +    +   S +  +  +  + 
Sbjct: 249 VGSRGFRVVFPRIPSQELRFLFLTQSKGSRFNI-ILEIQINFDVGFYSSSEAIPTTTTKG 307

Query: 134 FPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH-VTC 192
                  +++        +ECA+C+S F  ++ LR+LP CDH FH  C+D WL  +   C
Sbjct: 308 S--LKPLSIERAVEADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKC 364

Query: 193 PVCRANLTP 201
           PVCR  + P
Sbjct: 365 PVCRTAIPP 373

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL-ASHVTCPVC 195
           C +CL E+  D    +LP C H F   CI  WL + + TCP+C
Sbjct: 1   CPICLEEYLKD--PVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 139 YSAVKDLKIGKGALECAVCLSEFEDDET----LRLLPKCDHVFHPHCIDVWLASHVTCPV 194
           Y  + +    K   ECA+C+ +  D E       +L  C+HVF   CID+W     TCPV
Sbjct: 165 YEKLYNRSKDK---ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPV 221

Query: 195 CR 196
           CR
Sbjct: 222 CR 223

Length = 238

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197
           LEC +CL    D   + L P C HVF   CI  +L     CP+CR 
Sbjct: 3   LECPICLDLLRD--PVVLTP-CGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVC 195
           C +CL E +D   + +LP C H+F   CI  WL S +VTCP+C
Sbjct: 1   CPICLEEPKD--PVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 12/55 (21%)

Query: 154 CAVCLSEFED------------DETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196
           CA+C +                DE   +   C+H FH HCI  WL +   CP+ R
Sbjct: 23  CAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 33/174 (18%)

Query: 139 YSAVKDLKIGKGALECAVCLSE-FEDD-----ETLRLLPK---CDHVFHPHCIDVWLASH 189
           Y    + ++      C +C+ E F  D       L + PK   C H+ H HC+  WL   
Sbjct: 275 YPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ 334

Query: 190 VTCPVCRANLTPESNEKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINGEQSNSDAQA 249
            TCP+CR  +         + D ++ +  + N   ++++ +    V + +   + +    
Sbjct: 335 QTCPICRRPV---------IFDQSSPTPASPNVRNTQIATQ----VPNPDNTPTTTAVPG 381

Query: 250 LEITNAASHVTPMRNRPPRLGMPERFPRSHSTG---HSLVLAGVSVERYTLRFP 300
             ITN+++         P+       P ++S+G   H+  L+ V      L  P
Sbjct: 382 --ITNSSNQG------DPQASTFNGVPNANSSGFAAHTQDLSSVIPGWTMLPIP 427

Length = 491

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA---SHVTCPVCR 196
           C  C  +F  D+   +  KC H FH HCI  WLA   S   CP+CR
Sbjct: 35  CPQC--KFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 15/66 (22%)

Query: 150 GALECAVCLSEFEDDETLRLL----PKCDHVFHPHCIDVWLAS--------HV---TCPV 194
             +EC +C +   D   +  +    PKC   FH  C+  WL +        +V   TCP 
Sbjct: 1   FEIECGICYAYRLDGGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFNVSFGTCPY 60

Query: 195 CRANLT 200
           C+A ++
Sbjct: 61  CKAKIS 66

This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. Length = 70

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 144  DLKIGKGALECAVCLSEFED-DETL--RLLPKCDHVFHPHCIDVWLAS--HVTCPVCRAN 198
            D K   G  ECA+C S  +  D +L  +    C + FH  C+  W AS     CP+CR+ 
Sbjct: 1463 DEKF-SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521

Query: 199  LT 200
            +T
Sbjct: 1522 IT 1523

Length = 1525

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 11/55 (20%)

Query: 153 ECAVCLS-----EFEDDETLRLLPKCDHVFHPHCIDVW------LASHVTCPVCR 196
           EC +C         E+D    LL  C+H+F   CI++W        +   CP+CR
Sbjct: 172 ECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICR 226

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.74
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.4
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.26
PHA02929	238	N1R/p28-like protein; Provisional	99.23
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.23
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.13
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.81
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.77
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.75
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.75
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.69
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.69
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.69
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.67
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.67
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.66
PHA02926	242	zinc finger-like protein; Provisional	98.63
PF14634	44	zf-RING_5: zinc-RING finger domain	98.48
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.48
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.46
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.44
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.43
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.42
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.4
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.33
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.29
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.19
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.08
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.04
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.96
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.88
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.85
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.81
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.8
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.76
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.75
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.74
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.64
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.59
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.58
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.39
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.38
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.24
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.09
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.08
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.05
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.97
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.49
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.44
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.36
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.22
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.18
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.62
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.51
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.4
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.11
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.1
PHA02862	156	5L protein; Provisional	95.06
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.97
KOG2660	331	consensus Locus-specific chromosome binding protei	94.96
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.89
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	94.71
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.7
PHA03096	284	p28-like protein; Provisional	94.63
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.45
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.06
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.03
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.84
COG5152	259	Uncharacterized conserved protein, contains RING a	93.63
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.45
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.44
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.34
PF04641	260	Rtf2: Rtf2 RING-finger	93.08
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.42
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	92.21
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.04
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.93
KOG4739	233	consensus Uncharacterized protein involved in syna	91.9
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	91.12
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	90.84
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.67
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.54
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	89.15
PF03869	50	Arc: Arc-like DNA binding domain; InterPro: IPR005	88.87
KOG1001	674	consensus Helicase-like transcription factor HLTF/	88.84
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	87.77
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.58
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	87.12
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	85.77
KOG0298	1394	consensus DEAD box-containing helicase-like transc	85.64
KOG1940	276	consensus Zn-finger protein [General function pred	85.59
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	85.47
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	84.82
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	84.27
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	83.58
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	81.48
KOG1609	323	consensus Protein involved in mRNA turnover and st	80.65

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=4.5e-18  Score=170.45  Aligned_cols=80  Identities=35%  Similarity=0.855  Sum_probs=68.8

Q ss_pred             cCCCCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCC-CCCcccccC
Q 014794          122 RNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-CPVCRANLT  200 (418)
Q Consensus       122 r~rgl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~t-CP~CR~~l~  200 (418)
                      +.+.+.+..++++|+..|....+..   ..+.|+||||+|++++++|+|| |+|.||..|||.||..+.+ ||+|++++.
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~---~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDED---ATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccC---CCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            3567889999999999999876644   2279999999999999999999 9999999999999999855 999999887


Q ss_pred             CCCcc
Q 014794          201 PESNE  205 (418)
Q Consensus       201 ~~~~~  205 (418)
                      ...+.
T Consensus       279 ~~~~~  283 (348)
T KOG4628|consen  279 TDSGS  283 (348)
T ss_pred             CCCCC
Confidence            55444

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.40  E-value=7.6e-14  Score=100.30  Aligned_cols=44  Identities=57%  Similarity=1.256  Sum_probs=40.4

Q ss_pred             cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794          152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR  196 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR  196 (418)
                      ++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999999999998 999999999999999999999997

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=6.5e-12  Score=125.48  Aligned_cols=69  Identities=30%  Similarity=0.784  Sum_probs=52.4

Q ss_pred             CCHHHHhhCCceeeecccccccCCCCccccccccc-ccCC---------CceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794          126 LDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSE-FEDD---------ETLRLLPKCDHVFHPHCIDVWLASHVTCPVC  195 (418)
Q Consensus       126 l~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~-f~~~---------~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C  195 (418)
                      +.++.-+.+|+....+     .+.++..|+||+++ |..+         .+.+.|| |||+||-+|+..|++++++||+|
T Consensus       267 ~~kdl~~~~~t~t~eq-----l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPIC  340 (491)
T COG5243         267 ATKDLNAMYPTATEEQ-----LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPIC  340 (491)
T ss_pred             HhhHHHhhcchhhhhh-----hcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcc
Confidence            3444444555444333     35688899999999 5543         2456788 99999999999999999999999


Q ss_pred             ccccC
Q 014794          196 RANLT  200 (418)
Q Consensus       196 R~~l~  200 (418)
                      |.++.
T Consensus       341 r~p~i  345 (491)
T COG5243         341 RRPVI  345 (491)
T ss_pred             cCccc
Confidence            99954

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.23  E-value=5.5e-12  Score=121.60  Aligned_cols=78  Identities=29%  Similarity=0.652  Sum_probs=59.8

Q ss_pred             cCCCCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCc----eEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794          122 RNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDET----LRLLPKCDHVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       122 r~rgl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~----~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      ...+..+.+++.+|.+...-..... ...+.+|+||++.+.+++.    +.+++.|+|.||..||..|+..+.+||+||.
T Consensus       146 ~k~~~~~~~i~~lp~vl~~~e~~~~-~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~  224 (238)
T PHA02929        146 KKGKNYKKFLKTIPSVLSEYEKLYN-RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT  224 (238)
T ss_pred             HhcchhHHHHHhcchhhhhhhhhhc-CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCC
Confidence            3567789999999988654322222 2356799999999876541    2345569999999999999999999999999


Q ss_pred             ccC
Q 014794          198 NLT  200 (418)
Q Consensus       198 ~l~  200 (418)
                      .+.
T Consensus       225 ~~~  227 (238)
T PHA02929        225 PFI  227 (238)
T ss_pred             Eee
Confidence            775

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.23  E-value=5.9e-12  Score=100.49  Aligned_cols=57  Identities=39%  Similarity=0.831  Sum_probs=41.9

Q ss_pred             eecccccccCCCCcccccccccccCC----------CceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794          139 YSAVKDLKIGKGALECAVCLSEFEDD----------ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR  196 (418)
Q Consensus       139 y~~~~~~~~~~~~~~CaICl~~f~~~----------~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR  196 (418)
                      .+.+........++.|+||++.|.+.          -.+...+ |+|.||..||..||+.+.+||+||
T Consensus         7 ~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen    7 WNAVALWSWDIADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             EEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             EEEEEEEeecCcCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            34444444455666799999999432          2344444 999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2.2e-11  Score=119.04  Aligned_cols=51  Identities=49%  Similarity=1.194  Sum_probs=46.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ...+|+|||+.|..+++++++| |.|.||..|++.|+.. ...||+||.++.+
T Consensus       322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4579999999999999999999 9999999999999995 6689999998864

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.81  E-value=2.6e-09  Score=87.32  Aligned_cols=63  Identities=32%  Similarity=0.680  Sum_probs=45.6

Q ss_pred             eecccccccC-CCCcccccccccccC--------CC-ceEecCCCCccccchhHHHHHhc---CCCCCCcccccCC
Q 014794          139 YSAVKDLKIG-KGALECAVCLSEFED--------DE-TLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLTP  201 (418)
Q Consensus       139 y~~~~~~~~~-~~~~~CaICl~~f~~--------~~-~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~~l~~  201 (418)
                      +..+...+.. ..++.|.||...|..        ++ ...++.+|+|.||.+||.+||..   +..||+||++...
T Consensus         8 w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen    8 WHAVATWKWDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             EEEEEEEEEecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            3444444442 357899999999972        22 23345579999999999999986   4689999997653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.77  E-value=5.2e-09  Score=73.26  Aligned_cols=44  Identities=57%  Similarity=1.272  Sum_probs=36.6

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCccccc
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANL  199 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l  199 (418)
                      +|+||++.+  .+...+.+ |+|.||..|+..|+.. +..||+|+..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  33455555 9999999999999998 77899999754

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.75  E-value=8.8e-09  Score=96.20  Aligned_cols=50  Identities=30%  Similarity=0.857  Sum_probs=40.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc----------------CCCCCCcccccCCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----------------HVTCPVCRANLTPES  203 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----------------~~tCP~CR~~l~~~~  203 (418)
                      +..+|+||++.+++   ..+++ |+|.||..||..|+..                +..||+||.++....
T Consensus        17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~   82 (193)
T PLN03208         17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT   82 (193)
T ss_pred             CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence            67899999999866   45566 9999999999999852                347999999997543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.75  E-value=5.1e-09  Score=77.21  Aligned_cols=46  Identities=35%  Similarity=0.904  Sum_probs=39.3

Q ss_pred             CcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +..|.||++...+   +.++| |+|. |+..|+..|+.....||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4689999998665   77788 9999 999999999999999999999874

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=7.8e-09  Score=101.04  Aligned_cols=51  Identities=29%  Similarity=0.832  Sum_probs=43.6

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      .....|.+||+...+   ..-+| |||+||..||..|......||+||..+.+.+
T Consensus       237 ~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  237 EATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            456789999999776   34567 9999999999999999999999999887644

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.69  E-value=9.1e-09  Score=82.53  Aligned_cols=66  Identities=29%  Similarity=0.510  Sum_probs=49.2

Q ss_pred             eeeecccccccCCCCcccccccccccC------------CCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          137 FVYSAVKDLKIGKGALECAVCLSEFED------------DETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       137 ~~y~~~~~~~~~~~~~~CaICl~~f~~------------~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .++..+......-..+.|+||...|.+            ++.....-.|+|.||.+||..||..+..||+||+.....
T Consensus         6 kkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194           6 KKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             eeEeEEEEEecccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            445555544444456789999888753            234445557999999999999999999999999987544

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=7.7e-09  Score=94.77  Aligned_cols=53  Identities=32%  Similarity=0.788  Sum_probs=44.6

Q ss_pred             CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .++...|+|||+.+.....  +-.+|||+||..||..-+.....||+|++.|..+
T Consensus       128 ~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            3466899999999887544  3347999999999999999999999999977654

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.1e-08  Score=97.24  Aligned_cols=53  Identities=30%  Similarity=0.768  Sum_probs=42.5

Q ss_pred             CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhc---CCCCCCcccccCCCCc
Q 014794          148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLTPESN  204 (418)
Q Consensus       148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~~l~~~~~  204 (418)
                      .....+|.|||+.-++   .++.. |||.||..||.+||..   .+.||+|+..|..+.-
T Consensus        44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            4578899999998665   44554 9999999999999986   3458999998876543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.9e-08  Score=106.61  Aligned_cols=51  Identities=35%  Similarity=0.908  Sum_probs=44.8

Q ss_pred             CCCcccccccccccCCCc--eEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDET--LRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~--~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ..+..|+||++++..+..  ...+| |+|+||..|+..|++++++||.||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            357899999999988654  67788 9999999999999999999999999554

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.66  E-value=1.5e-08  Score=71.00  Aligned_cols=39  Identities=41%  Similarity=1.109  Sum_probs=32.8

Q ss_pred             cccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794          154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVC  195 (418)
Q Consensus       154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C  195 (418)
                      |+||++.+.+  .+.+++ |||.|+.+||..|++.+.+||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999998877  345676 99999999999999999899998

>PHA02926 zinc finger-like protein; Provisional

Probab=98.63  E-value=1.8e-08  Score=95.51  Aligned_cols=52  Identities=29%  Similarity=0.830  Sum_probs=40.3

Q ss_pred             CCCcccccccccccCC-----CceEecCCCCccccchhHHHHHhcC------CCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDD-----ETLRLLPKCDHVFHPHCIDVWLASH------VTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~-----~~~r~lp~C~H~FH~~CI~~WL~~~------~tCP~CR~~l~  200 (418)
                      ..+.+|+||++..-++     ....+|+.|+|.||..||..|...+      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            3568999999987432     1234676799999999999999753      35999998764

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.48  E-value=8.6e-08  Score=69.00  Aligned_cols=44  Identities=30%  Similarity=0.944  Sum_probs=38.2

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      +|.||++.|.+.....+++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            5999999996666777886 9999999999999866778999985

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=9.4e-08  Score=92.61  Aligned_cols=54  Identities=31%  Similarity=0.703  Sum_probs=44.2

Q ss_pred             CCCcccccccccccCCC-------ceEecCCCCccccchhHHHHHh--cCCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDE-------TLRLLPKCDHVFHPHCIDVWLA--SHVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~-------~~r~lp~C~H~FH~~CI~~WL~--~~~tCP~CR~~l~~~~  203 (418)
                      .++..|+||-..+....       .+-.|. |+|+||..||.-|-.  ++++||.|+..++.+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR  284 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence            46789999999987654       556676 999999999999964  5789999998887543

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.4e-08  Score=81.68  Aligned_cols=68  Identities=26%  Similarity=0.531  Sum_probs=52.3

Q ss_pred             hCCceeeecccccccCCCCccccccccccc-------------CCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794          133 SFPIFVYSAVKDLKIGKGALECAVCLSEFE-------------DDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL  199 (418)
Q Consensus       133 ~lP~~~y~~~~~~~~~~~~~~CaICl~~f~-------------~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l  199 (418)
                      .|...+++.+.-...+-..+.|+||...+.             .++.......|+|.||..||..||+.+..||+|.++.
T Consensus        28 rF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   28 RFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             ceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            455566677666666667889999988763             2344555557999999999999999999999998876


Q ss_pred             C
Q 014794          200 T  200 (418)
Q Consensus       200 ~  200 (418)
                      .
T Consensus       108 ~  108 (114)
T KOG2930|consen  108 V  108 (114)
T ss_pred             e
Confidence            4

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3.6e-08  Score=78.48  Aligned_cols=64  Identities=31%  Similarity=0.644  Sum_probs=47.7

Q ss_pred             eeeecccccccCCCCcccccccccccC---------CCceEecCCCCccccchhHHHHHhc---CCCCCCcccccC
Q 014794          137 FVYSAVKDLKIGKGALECAVCLSEFED---------DETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLT  200 (418)
Q Consensus       137 ~~y~~~~~~~~~~~~~~CaICl~~f~~---------~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~~l~  200 (418)
                      ..|..+........++.|-||.-.|..         ++...++-.|.|.||..||.+|+..   +..||+||+...
T Consensus         6 ~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen    6 KRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             EEEEEEEEEEEcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            345555555555667799999999973         2333345579999999999999975   557999999764

>smart00184 RING Ring finger

Probab=98.43  E-value=1.5e-07  Score=63.52  Aligned_cols=38  Identities=45%  Similarity=1.188  Sum_probs=32.2

Q ss_pred             cccccccccCCCceEecCCCCccccchhHHHHHh-cCCCCCCc
Q 014794          154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVC  195 (418)
Q Consensus       154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~C  195 (418)
                      |+||++..   .....++ |+|.||..|++.|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999883   3466777 999999999999998 56789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>smart00504 Ubox Modified RING finger domain

Probab=98.42  E-value=2.1e-07  Score=71.01  Aligned_cols=46  Identities=33%  Similarity=0.600  Sum_probs=40.0

Q ss_pred             cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ..|+||.+.+.+.   .+++ |||+|+..||..|+..+.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4699999998873   5566 99999999999999999999999987743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.40  E-value=1.4e-07  Score=66.29  Aligned_cols=39  Identities=49%  Similarity=1.232  Sum_probs=33.3

Q ss_pred             cccccccccCCCceEecCCCCccccchhHHHHHh--cCCCCCCc
Q 014794          154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA--SHVTCPVC  195 (418)
Q Consensus       154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~--~~~tCP~C  195 (418)
                      |+||++.+....  .+++ |+|.|+..||..|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987743  4676 999999999999999  46679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.33  E-value=3.4e-07  Score=65.50  Aligned_cols=38  Identities=37%  Similarity=0.964  Sum_probs=29.4

Q ss_pred             cccccccccCCCceEecCCCCccccchhHHHHHhcC----CCCCCc
Q 014794          154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH----VTCPVC  195 (418)
Q Consensus       154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~----~tCP~C  195 (418)
                      |+||++-|.+   .+.++ |||.|+..||..|.+..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999998   56676 99999999999999863    469988

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.29  E-value=4e-07  Score=93.99  Aligned_cols=49  Identities=33%  Similarity=0.722  Sum_probs=42.0

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      .....|+||++.|..   .++++ |+|.||..||..|+..+..||+|+..+..
T Consensus        24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            367799999999876   34566 99999999999999998899999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.7e-06  Score=89.86  Aligned_cols=51  Identities=33%  Similarity=0.987  Sum_probs=39.7

Q ss_pred             CCcccccccccccCC---C-----------ceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDD---E-----------TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~---~-----------~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ....|+||+..+.--   .           ...+.| |.|+||..|+..|+.. +-.||+||.++.+
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            456899999997521   1           123457 9999999999999995 5589999998864

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.4e-06  Score=84.44  Aligned_cols=52  Identities=33%  Similarity=0.793  Sum_probs=42.4

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHH-HHhcCCC-CCCcccccCCCCc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDV-WLASHVT-CPVCRANLTPESN  204 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~-WL~~~~t-CP~CR~~l~~~~~  204 (418)
                      ..+..|+||++....   ...+| |||+||..||.. |-.++.- ||+||+.+.+++.
T Consensus       213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            357899999998665   45566 999999999999 9777665 9999998876543

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.04  E-value=1e-06  Score=96.83  Aligned_cols=52  Identities=35%  Similarity=0.863  Sum_probs=40.2

Q ss_pred             CCCcccccccccccCCC---ceEecCCCCccccchhHHHHHhc--CCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDE---TLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~---~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~  200 (418)
                      ++..+||||+..+..-+   .-...+.|.|.||..|+..|+.+  +.+||+||..+.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            37789999998876211   11234569999999999999987  668999998764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.96  E-value=5.3e-06  Score=61.31  Aligned_cols=42  Identities=29%  Similarity=0.895  Sum_probs=32.6

Q ss_pred             ccccccccccCCCceEecCCCC-----ccccchhHHHHHhc--CCCCCCcc
Q 014794          153 ECAVCLSEFEDDETLRLLPKCD-----HVFHPHCIDVWLAS--HVTCPVCR  196 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~-----H~FH~~CI~~WL~~--~~tCP~CR  196 (418)
                      .|.||++. .+++...+.| |.     |.+|..|+..|+..  +.+||+|.
T Consensus         1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48999993 3444455778 85     89999999999976  44899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=6.7e-06  Score=86.16  Aligned_cols=52  Identities=25%  Similarity=0.616  Sum_probs=40.1

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhc-----CCCCCCcccccCCCCccc
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRANLTPESNEK  206 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-----~~tCP~CR~~l~~~~~~~  206 (418)
                      +..|+|||+.....   ..+ .|||+||..||.+++..     ...||+||..|...+-..
T Consensus       186 ~~~CPICL~~~~~p---~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p  242 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP  242 (513)
T ss_pred             CCcCCcccCCCCcc---ccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence            77899999986542   233 49999999999998764     457999999887654433

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.85  E-value=4.2e-06  Score=66.33  Aligned_cols=50  Identities=34%  Similarity=0.786  Sum_probs=23.8

Q ss_pred             Cccccccccccc-CCCc-eEec--CCCCccccchhHHHHHhc----C-------CCCCCcccccC
Q 014794          151 ALECAVCLSEFE-DDET-LRLL--PKCDHVFHPHCIDVWLAS----H-------VTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~-~~~~-~r~l--p~C~H~FH~~CI~~WL~~----~-------~tCP~CR~~l~  200 (418)
                      +.+|.||+..+. .++. ..+-  ++|++.||..||..||..    +       .+||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            358999999876 3322 2233  269999999999999974    1       14999998875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.81  E-value=6.6e-06  Score=84.87  Aligned_cols=48  Identities=31%  Similarity=0.800  Sum_probs=39.6

Q ss_pred             CCcccccccccccCCC-ceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +..+|+|||+.+.+.. .++... |.|.||..|+..|  ...+||+||....
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence            5679999999998765 344454 9999999999999  5678999998665

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.80  E-value=1.1e-05  Score=64.13  Aligned_cols=48  Identities=25%  Similarity=0.474  Sum_probs=37.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      +...|+||.+-|.+   .+++| |||.|...||..|+.. +.+||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            35689999999988   66777 9999999999999999 8899999988764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.76  E-value=1.6e-05  Score=57.27  Aligned_cols=38  Identities=34%  Similarity=0.907  Sum_probs=22.7

Q ss_pred             cccccccccCCC-ceEecCCCCccccchhHHHHHhcC----CCCC
Q 014794          154 CAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASH----VTCP  193 (418)
Q Consensus       154 CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~----~tCP  193 (418)
                      |+||.+ |...+ ..++|+ |||+|+.+||..++...    .+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 75544 567898 99999999999999853    3577

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=9.6e-06  Score=76.91  Aligned_cols=44  Identities=39%  Similarity=0.942  Sum_probs=39.2

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR  196 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR  196 (418)
                      .+...|+||++.|...   .++| |+|.||..||..+......||.||
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            3678999999999997   6787 999999999999988566899999

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.74  E-value=2.1e-05  Score=78.65  Aligned_cols=51  Identities=22%  Similarity=0.542  Sum_probs=37.5

Q ss_pred             CcccccccccccCCC--ceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794          151 ALECAVCLSEFEDDE--TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE  202 (418)
Q Consensus       151 ~~~CaICl~~f~~~~--~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~  202 (418)
                      +..|+||...--...  .+.+.+ |||.||..||+..+.. ...||.|+..+...
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            468999999633222  333444 9999999999996544 56899999887644

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=1.4e-05  Score=81.23  Aligned_cols=46  Identities=30%  Similarity=0.950  Sum_probs=34.8

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhc---CCCCCCcc
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCR  196 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR  196 (418)
                      ..+|.||-+-+.....+.-+..|||+||..|+.+|++.   +.+||+|+
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            34799994444444445444459999999999999996   45899999

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=3e-05  Score=78.28  Aligned_cols=49  Identities=33%  Similarity=0.760  Sum_probs=41.7

Q ss_pred             CCCcccccccccccCCCceEecCCCCc-cccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDH-VFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H-~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      +...+|.|||.+-.+   +.+|| |-| ..|..|.+..--+++.||+||+++..
T Consensus       288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            346799999999776   77899 999 68899999977778899999998864

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.59  E-value=2.6e-05  Score=76.69  Aligned_cols=47  Identities=30%  Similarity=0.642  Sum_probs=39.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      .-+.|-||-+-|..   ..+.+ |||.||.-||...|..+..||+||.+..
T Consensus        24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence            56689999888775   33455 9999999999999999999999998653

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.58  E-value=1.8e-05  Score=79.15  Aligned_cols=48  Identities=31%  Similarity=0.782  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      .-..|-||.+-|..   ..++| |+|.||.-||...|..+..||.|+..+.+
T Consensus        22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence            56689999999887   56677 99999999999999999999999988754

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.39  E-value=8.6e-05  Score=75.78  Aligned_cols=51  Identities=25%  Similarity=0.725  Sum_probs=40.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCCcccccCCCCc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLTPESN  204 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~~  204 (418)
                      .-.-|.||-+.-+   .+++-| |||..|..|+..|-..  .++||.||..+.-.+.
T Consensus       368 TFeLCKICaendK---dvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  368 TFELCKICAENDK---DVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             hHHHHHHhhccCC---Cccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence            3456999987644   488888 9999999999999854  5789999999865443

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=7.9e-05  Score=75.82  Aligned_cols=51  Identities=29%  Similarity=0.881  Sum_probs=40.2

Q ss_pred             CCcccccccccccCCC----ceEecCCCCccccchhHHHHHh--c-----CCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDE----TLRLLPKCDHVFHPHCIDVWLA--S-----HVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~----~~r~lp~C~H~FH~~CI~~WL~--~-----~~tCP~CR~~l~  200 (418)
                      .+.+|.||++...+..    ...++|.|.|.||..||..|-.  +     ...||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            5679999999976643    2345788999999999999983  3     467999997553

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.38  E-value=5.4e-05  Score=74.75  Aligned_cols=53  Identities=30%  Similarity=0.766  Sum_probs=44.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHh------------------c-----CCCCCCcccccCCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA------------------S-----HVTCPVCRANLTPES  203 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~------------------~-----~~tCP~CR~~l~~~~  203 (418)
                      ....|.|||..|.+++...+++ |.|.||..|+..+|.                  .     +..||+||..|..+.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            4568999999999999888887 999999999998773                  1     235999999886543

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00016  Score=68.93  Aligned_cols=60  Identities=27%  Similarity=0.604  Sum_probs=50.0

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--------CCCCCCcccccCCCCccccccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPVCRANLTPESNEKVKLC  210 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~CR~~l~~~~~~~~~~~  210 (418)
                      +....|..|-..+..++.+|+.  |.|.||.+|+++|-..        ...||.|-.+|+++.....++.
T Consensus        48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva  115 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVA  115 (299)
T ss_pred             CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhH
Confidence            4667899999999999999884  9999999999999864        3469999999997766555443

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=3.2e-05  Score=77.83  Aligned_cols=50  Identities=32%  Similarity=0.584  Sum_probs=42.1

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~  202 (418)
                      .+..|.|||+-++.   .+..+.|.|-||.+||..-+.. ++.||.||+.+...
T Consensus        42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            57789999999876   3445579999999999998876 78999999988754

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.24  E-value=5.7e-05  Score=82.30  Aligned_cols=49  Identities=27%  Similarity=0.541  Sum_probs=40.2

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ...|++|+..+.+.......+ |+|.||..||+.|-..-.+||+||..+.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence            446888888877765554555 9999999999999999999999998664

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00022  Score=70.69  Aligned_cols=48  Identities=29%  Similarity=0.467  Sum_probs=38.5

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE  202 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~  202 (418)
                      ..+|+||+....-   ...++ |+|.||..||.--... ..+|++||.++...
T Consensus         7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            4589999987554   35566 9999999999987665 55799999999754

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.08  E-value=0.00021  Score=55.61  Aligned_cols=47  Identities=30%  Similarity=0.764  Sum_probs=23.8

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      ...|++|.+-++..   ..+..|.|+|+..||..-+..  .||+|+.+.-.+
T Consensus         7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q   53 (65)
T PF14835_consen    7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ   53 (65)
T ss_dssp             TTS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred             hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence            45799999988763   334469999999999885543  499998876543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00035  Score=71.67  Aligned_cols=50  Identities=26%  Similarity=0.830  Sum_probs=38.4

Q ss_pred             CCcccccccccccC-CCceEecCCCCccccchhHHHHHhc--CCCCCCccccc
Q 014794          150 GALECAVCLSEFED-DETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANL  199 (418)
Q Consensus       150 ~~~~CaICl~~f~~-~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l  199 (418)
                      ....|+|||+.+.- ++...+.+.|+|.|-.+||+.||-+  ...||.|...-
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            45689999999874 4444455569999999999999964  33599996543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00022  Score=78.01  Aligned_cols=51  Identities=31%  Similarity=0.812  Sum_probs=40.5

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~~  203 (418)
                      ++-..|++|-...++   . ++++|+|+||..||..-+.. +..||.|-..+.+.+
T Consensus       641 K~~LkCs~Cn~R~Kd---~-vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKD---A-VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             HhceeCCCccCchhh---H-HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            467899999876555   3 34479999999999999875 778999988776544

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.00066  Score=51.17  Aligned_cols=46  Identities=33%  Similarity=0.663  Sum_probs=32.0

Q ss_pred             CcccccccccccCCCceEecCCCCcc-ccchhHH-HHHhcCCCCCCcccccC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHV-FHPHCID-VWLASHVTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~-~WL~~~~tCP~CR~~l~  200 (418)
                      .+||.||++.-.+  .+  +..|||. .+.+|-. .|-..+..||+||+++.
T Consensus         7 ~dECTICye~pvd--sV--lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVD--SV--LYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcch--HH--HHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            4799999987443  22  2349995 5566644 44446889999999774

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0018  Score=67.28  Aligned_cols=49  Identities=33%  Similarity=0.783  Sum_probs=41.9

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ..+.+|.||+..+..   ...+| |||.||..||+.-+....-||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            467899999888877   45567 99999999999977777789999998875

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.36  E-value=0.0019  Score=67.11  Aligned_cols=52  Identities=35%  Similarity=0.730  Sum_probs=43.2

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      ++...|++|...+.+.-..  . .|+|.||..|+..|+..+..||.|+..+....
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhh
Confidence            3668899999998885432  3 49999999999999999999999998876443

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.29  E-value=0.0018  Score=57.58  Aligned_cols=47  Identities=17%  Similarity=0.517  Sum_probs=36.8

Q ss_pred             CCcccccccccccCCCceEecCCCC------ccccchhHHHHHhcCCCCCCccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCD------HVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~------H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      ...||+||++.+..++.++.++ |+      |+||.+|+..|-..+..=|.=|.
T Consensus        25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~   77 (134)
T PF05883_consen   25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFNRN   77 (134)
T ss_pred             cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence            4679999999999966777777 76      99999999999554555555543

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.22  E-value=0.0048  Score=63.26  Aligned_cols=47  Identities=36%  Similarity=0.849  Sum_probs=39.1

Q ss_pred             CCcccccccccccCC-CceEecCCCCccccchhHHHHHhcC--CCCCCccc
Q 014794          150 GALECAVCLSEFEDD-ETLRLLPKCDHVFHPHCIDVWLASH--VTCPVCRA  197 (418)
Q Consensus       150 ~~~~CaICl~~f~~~-~~~r~lp~C~H~FH~~CI~~WL~~~--~tCP~CR~  197 (418)
                      -+..|..|-+.+-.. +.+.-|| |.|+||..|+...|+++  .+||.||+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            456799999888654 4567788 99999999999999875  57999994

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.18  E-value=0.0025  Score=48.65  Aligned_cols=42  Identities=33%  Similarity=0.704  Sum_probs=27.2

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPV  194 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~  194 (418)
                      -...|+|.+..|++.  ++-. +|+|+|-.+.|.+||..  ...||+
T Consensus        10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            457899999998873  3333 59999999999999944  446998

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.62  E-value=0.0048  Score=65.31  Aligned_cols=49  Identities=41%  Similarity=0.836  Sum_probs=38.8

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-----CCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-----~~tCP~CR~~l~~  201 (418)
                      .+..+|.+|.++-++   .... .|.|.||..||.++...     +.+||+|...+..
T Consensus       534 k~~~~C~lc~d~aed---~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  534 KGEVECGLCHDPAED---YIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             cCceeecccCChhhh---hHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            567899999988555   3344 49999999999999864     6789999876653

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.0047  Score=56.42  Aligned_cols=30  Identities=33%  Similarity=0.827  Sum_probs=27.4

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHP  179 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~  179 (418)
                      +...||.||||+++.++++..|| |-.+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            35679999999999999999999 9999996

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.40  E-value=0.0075  Score=66.95  Aligned_cols=50  Identities=30%  Similarity=0.744  Sum_probs=40.2

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-------CCCCCCcccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-------HVTCPVCRAN  198 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-------~~tCP~CR~~  198 (418)
                      ...++|.||++.+.....+---..|.|+||..||..|-.+       ...||.|+..
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            4778999999999887766444469999999999999764       2369999843

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.11  E-value=0.013  Score=67.99  Aligned_cols=51  Identities=25%  Similarity=0.714  Sum_probs=41.4

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcC----------CCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH----------VTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~----------~tCP~CR~~l~  200 (418)
                      +.++.|-||..+-........|. |+|+||.+|...-|+..          -.||+|..++.
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            47889999999877766677786 99999999998877642          26999998774

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.10  E-value=0.012  Score=59.90  Aligned_cols=45  Identities=33%  Similarity=0.683  Sum_probs=33.7

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ...+.|.||+++.++   ...+| |||+=|  |...- +...+||+||+.+.
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            356789999999777   67788 999944  76664 33445999998774

>PHA02862 5L protein; Provisional

Probab=95.06  E-value=0.015  Score=52.35  Aligned_cols=48  Identities=19%  Similarity=0.550  Sum_probs=35.3

Q ss_pred             cccccccccccCCCceEecC-CC---CccccchhHHHHHhc--CCCCCCcccccCCCC
Q 014794          152 LECAVCLSEFEDDETLRLLP-KC---DHVFHPHCIDVWLAS--HVTCPVCRANLTPES  203 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp-~C---~H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~  203 (418)
                      +.|-||+++-.+.  .  -| .|   ...-|++|+.+|+..  +..||+|+.++....
T Consensus         3 diCWIC~~~~~e~--~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~   56 (156)
T PHA02862          3 DICWICNDVCDER--N--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK   56 (156)
T ss_pred             CEEEEecCcCCCC--c--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence            5799999985432  2  34 23   367899999999975  557999999886443

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.97  E-value=0.021  Score=41.80  Aligned_cols=40  Identities=35%  Similarity=1.034  Sum_probs=27.3

Q ss_pred             cccccccccCCCceEecCCCC-----ccccchhHHHHHhc--CCCCCCc
Q 014794          154 CAVCLSEFEDDETLRLLPKCD-----HVFHPHCIDVWLAS--HVTCPVC  195 (418)
Q Consensus       154 CaICl~~f~~~~~~r~lp~C~-----H~FH~~CI~~WL~~--~~tCP~C  195 (418)
                      |-||+++-.+++.+ +.| |.     -..|..|+..|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            77999987766633 455 54     37899999999985  5679988

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.96  E-value=0.0058  Score=61.45  Aligned_cols=50  Identities=26%  Similarity=0.603  Sum_probs=41.0

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ....+|.+|-.=|.+...+  . .|-|.||..||...|+...+||.|...+..
T Consensus        13 n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             ccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            3677899998777765443  2 499999999999999999999999876653

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.033  Score=56.16  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL  199 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l  199 (418)
                      ....|+||+.....+..+.   .-|-+||..||-.++..+..||+=-.+.
T Consensus       299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            4568999999977654332   2799999999999999999999865544

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=0.018  Score=59.58  Aligned_cols=49  Identities=24%  Similarity=0.762  Sum_probs=40.3

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--------CCCCCCcccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPVCRAN  198 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~CR~~  198 (418)
                      .....|.||+++....+....+| |+|+||..|+..++..        .-.||-|...
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            35678999999988878899999 9999999999999874        2358777543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.03  Score=55.20  Aligned_cols=51  Identities=27%  Similarity=0.527  Sum_probs=37.8

Q ss_pred             cCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCCcccccC
Q 014794          147 IGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLT  200 (418)
Q Consensus       147 ~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~  200 (418)
                      .+..+.+|++|-+.=..  .....+ |+|+||.-||..=+..  ..+||.|-.++.
T Consensus       235 ~~t~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cccCCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34567899999876332  333444 9999999999987664  478999987765

>PHA03096 p28-like protein; Provisional

Probab=94.63  E-value=0.015  Score=58.05  Aligned_cols=46  Identities=26%  Similarity=0.611  Sum_probs=34.9

Q ss_pred             cccccccccccCCC----ceEecCCCCccccchhHHHHHhc---CCCCCCccc
Q 014794          152 LECAVCLSEFEDDE----TLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRA  197 (418)
Q Consensus       152 ~~CaICl~~f~~~~----~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~  197 (418)
                      -+|.||++......    .--+|+.|.|.|+..||..|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            57999999977542    33468899999999999999864   335666654

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.45  E-value=0.02  Score=47.67  Aligned_cols=32  Identities=31%  Similarity=0.809  Sum_probs=26.3

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHH
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCID  183 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~  183 (418)
                      +...|++|-..+.. ....+-| |||+||..|+.
T Consensus        77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            45679999999877 4566677 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.041  Score=53.50  Aligned_cols=54  Identities=17%  Similarity=0.330  Sum_probs=47.6

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      ..+.|+||.+.+.....+.+|..|||+|+.+|+...+.....||+|-.++...+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            567899999999988878777779999999999999999999999988886544

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=0.042  Score=55.87  Aligned_cols=49  Identities=20%  Similarity=0.465  Sum_probs=40.9

Q ss_pred             CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ..++..|+||+..   .......| |+|.=|..||.+-|...+.|=.|+..+.
T Consensus       419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence            3578899999865   22355677 9999999999999999999999998775

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.84  E-value=0.044  Score=50.09  Aligned_cols=50  Identities=18%  Similarity=0.619  Sum_probs=36.2

Q ss_pred             CCCcccccccccccCCCceEecC-CCCc---cccchhHHHHHhc--CCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLP-KCDH---VFHPHCIDVWLAS--HVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp-~C~H---~FH~~CI~~WL~~--~~tCP~CR~~l~~~  202 (418)
                      ..+.+|-||.++-.+  ..  -| +|..   .-|.+|+..|+..  ..+|++|.++....
T Consensus         6 ~~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            356789999988432  22  34 3444   5699999999986  45799999987544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.63  E-value=0.029  Score=52.99  Aligned_cols=46  Identities=22%  Similarity=0.497  Sum_probs=38.1

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL  199 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l  199 (418)
                      -...|.||-.+|+.   .++. .|||.||..|...=++....|-+|-+..
T Consensus       195 IPF~C~iCKkdy~s---pvvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         195 IPFLCGICKKDYES---PVVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             Cceeehhchhhccc---hhhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence            45689999999987   3344 4999999999999888889999997644

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.45  E-value=0.036  Score=55.24  Aligned_cols=46  Identities=33%  Similarity=0.795  Sum_probs=35.0

Q ss_pred             cccccccccccCCCceEecCCCCccccchhHHHHHh-cCCCCCCc-ccccC
Q 014794          152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVC-RANLT  200 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~C-R~~l~  200 (418)
                      ..|+.|..-+...  + ..|.|+|.||.+||..-|. ....||.| |+++.
T Consensus       275 LkCplc~~Llrnp--~-kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         275 LKCPLCHCLLRNP--M-KTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             ccCcchhhhhhCc--c-cCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            6899998776653  2 2367999999999997765 57899999 44554

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.05  Score=50.61  Aligned_cols=31  Identities=29%  Similarity=0.861  Sum_probs=25.0

Q ss_pred             CCCccccchhHHHHHhc-----C------CCCCCcccccCCC
Q 014794          172 KCDHVFHPHCIDVWLAS-----H------VTCPVCRANLTPE  202 (418)
Q Consensus       172 ~C~H~FH~~CI~~WL~~-----~------~tCP~CR~~l~~~  202 (418)
                      .||.-||+-|+..||..     +      ..||.|-.++..+
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            49999999999999974     1      2599998887643

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.34  E-value=0.056  Score=39.94  Aligned_cols=45  Identities=22%  Similarity=0.580  Sum_probs=21.8

Q ss_pred             cccccccccCCC-ceEecCCCCccccchhHHHHHh-cCCCCCCccccc
Q 014794          154 CAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLA-SHVTCPVCRANL  199 (418)
Q Consensus       154 CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~CR~~l  199 (418)
                      |++|.+++...+ .+.-- .|++..+..|...-++ .+..||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984433 33333 4888888888888776 477899999864

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.08  E-value=0.1  Score=51.35  Aligned_cols=53  Identities=28%  Similarity=0.573  Sum_probs=41.6

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .....|+|+..+|........+-.|||+|...||..- .....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence            5678999999999766555555449999999999996 3356799998887643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.42  E-value=0.087  Score=53.54  Aligned_cols=70  Identities=20%  Similarity=0.430  Sum_probs=49.1

Q ss_pred             CCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHH--HhcCCCCCCcccccC
Q 014794          125 GLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW--LASHVTCPVCRANLT  200 (418)
Q Consensus       125 gl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~W--L~~~~tCP~CR~~l~  200 (418)
                      .-.+..+...|...-+...+.  +++...|.||-..+.-   ..++| |+|..|.-|-..-  |..+..||+||....
T Consensus        37 kqkKNnlsaEPnlttsSaddt--DEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          37 KQKKNNLSAEPNLTTSSADDT--DEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             hccccccccCCcccccccccc--ccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            344455666676555544443  3466789999887654   56788 9999999997653  556889999998654

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.21  E-value=0.033  Score=55.35  Aligned_cols=42  Identities=29%  Similarity=0.712  Sum_probs=29.9

Q ss_pred             CcccccccccccCCCceEecCCCCccc-cchhHHHHHhcCCCCCCcccccC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVF-HPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~F-H~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ..-|+||++.-.+   ...|+ |||.. |.+|-..    -..||+||+.+.
T Consensus       300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence            5679999998555   77887 99963 3445332    348999998663

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.04  E-value=0.066  Score=59.81  Aligned_cols=42  Identities=26%  Similarity=0.752  Sum_probs=31.8

Q ss_pred             cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794          152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL  199 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l  199 (418)
                      ..|..|-..++.+-.  -- .|+|.||++|+.   .+...||-|+.++
T Consensus       841 skCs~C~~~LdlP~V--hF-~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFV--HF-LCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCcccccee--ee-ecccHHHHHhhc---cCcccCCccchhh
Confidence            589999888766432  22 399999999998   4567899998733

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.93  E-value=0.012  Score=60.42  Aligned_cols=51  Identities=22%  Similarity=0.612  Sum_probs=43.7

Q ss_pred             CCcccccccccccCC-CceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDD-ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~-~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      -...|+||...++.. +.+..+- |+|.+|..||..||.....||.|+..+..
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            356799999999876 5666665 99999999999999999999999998863

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.90  E-value=0.057  Score=52.32  Aligned_cols=45  Identities=27%  Similarity=0.703  Sum_probs=32.5

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      .|-.|..- ..++...++. |.|+||..|...-  ....||+|++++..
T Consensus         5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRI   49 (233)
T ss_pred             Eecccccc-CCCCceeeee-chhhhhhhhcccC--Cccccccccceeee
Confidence            47767554 3366777775 9999999997763  22389999998753

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.12  E-value=0.12  Score=51.17  Aligned_cols=48  Identities=29%  Similarity=0.809  Sum_probs=38.6

Q ss_pred             CcccccccccccCCC---ceEecCCCCccccchhHHHHHhc-CCCCCCccccc
Q 014794          151 ALECAVCLSEFEDDE---TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANL  199 (418)
Q Consensus       151 ~~~CaICl~~f~~~~---~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l  199 (418)
                      ..+|-||-++|...+   ..++| +|||.|+..|+..-+.. ...||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            468999999998764   34566 59999999999987765 44699999875

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.84  E-value=0.1  Score=52.03  Aligned_cols=46  Identities=24%  Similarity=0.478  Sum_probs=38.4

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ...|-||...|..+   ++. +|+|.||..|...=++....|++|-+...
T Consensus       241 Pf~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence            45699999999873   334 59999999999988888899999977654

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.67  E-value=0.11  Score=37.28  Aligned_cols=41  Identities=20%  Similarity=0.624  Sum_probs=23.5

Q ss_pred             cccccccccCCCceEecCCCCccccchhHHHHHhcCC--CCCCc
Q 014794          154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV--TCPVC  195 (418)
Q Consensus       154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~--tCP~C  195 (418)
                      |.+|.+....+...... .|+=.+|..|+..++..+.  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67777776666544322 4888999999999998755  79988

; PDB: 3NW0_A 2CT0_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.54  E-value=0.15  Score=51.81  Aligned_cols=52  Identities=17%  Similarity=0.443  Sum_probs=37.8

Q ss_pred             CCCcccccccccccCCCce-EecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETL-RLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~-r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ++++.|+.|++++...++- .-.| ||-..|.-|...--+. +..||-||.....
T Consensus        12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            3556699999999876643 3455 9988888886654333 6789999987754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=89.15  E-value=0.24  Score=37.55  Aligned_cols=44  Identities=23%  Similarity=0.537  Sum_probs=31.3

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .|..|...   +.+-.++| |+|+.+..|.+-+  .-+-||+|-.++...
T Consensus         9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence            45555443   23345677 9999999998764  556799998888654

>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site

Probab=88.87  E-value=0.24  Score=36.72  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=16.9

Q ss_pred             cccccccccccHHHHHHHHh
Q 014794          290 VSVERYTLRFPDEVRKQLMT  309 (418)
Q Consensus       290 ~~~eR~TLrlPe~v~~~~~~  309 (418)
                      .+.++|+||||++++.+|-.
T Consensus         2 r~~~~f~lRlP~~l~~~lk~   21 (50)
T PF03869_consen    2 RKDPQFNLRLPEELKEKLKE   21 (50)
T ss_dssp             CCSEEEEEECEHHHHHHHHH
T ss_pred             CCCCceeeECCHHHHHHHHH
Confidence            35789999999999988753

Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=88.84  E-value=0.15  Score=56.68  Aligned_cols=47  Identities=23%  Similarity=0.640  Sum_probs=36.6

Q ss_pred             cccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCCcccccCCCC
Q 014794          152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLTPES  203 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~  203 (418)
                      ..|.||++    .+...+.+ |+|.||.+|+..-+..  ...||+||..+....
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999    33455565 9999999999988775  336999999776443

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=87.77  E-value=0.58  Score=35.42  Aligned_cols=35  Identities=26%  Similarity=0.751  Sum_probs=30.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHH
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDV  184 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~  184 (418)
                      ....|.+|-+.|.+++.+++-|.|+-.+|..|.+.
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            44579999999998899999999999999999654

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.58  E-value=0.23  Score=55.92  Aligned_cols=35  Identities=23%  Similarity=0.545  Sum_probs=28.4

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHH
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL  186 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL  186 (418)
                      .++.|.+|...+... ...+-| |||.||.+||..-.
T Consensus       816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            678999999887764 445666 99999999998754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.12  E-value=0.31  Score=54.03  Aligned_cols=23  Identities=35%  Similarity=0.895  Sum_probs=21.3

Q ss_pred             CCCccccchhHHHHHhcCCCCCC
Q 014794          172 KCDHVFHPHCIDVWLASHVTCPV  194 (418)
Q Consensus       172 ~C~H~FH~~CI~~WL~~~~tCP~  194 (418)
                      .|+|+.|.+|..+|+.....||.
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            49999999999999999999984

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.77  E-value=0.42  Score=51.88  Aligned_cols=48  Identities=29%  Similarity=0.841  Sum_probs=39.7

Q ss_pred             CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      .+..+.|+||+.+.    ..+..+ |.   |..|+..|+..+..||+|+..+...+
T Consensus       476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~  523 (543)
T KOG0802|consen  476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD  523 (543)
T ss_pred             hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence            34677899999998    456666 88   89999999999999999998876544

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=85.64  E-value=0.25  Score=57.56  Aligned_cols=45  Identities=27%  Similarity=0.829  Sum_probs=37.2

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      +...|.||++.+..-..+.   .|+|.+|..|+..|+..+..||.|..
T Consensus      1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhh
Confidence            4558999999987432222   49999999999999999999999984

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=85.59  E-value=0.4  Score=47.72  Aligned_cols=47  Identities=23%  Similarity=0.658  Sum_probs=38.5

Q ss_pred             CCcccccccccccCCC-ceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794          150 GALECAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      ....|+||.+.+-... .+..++ |+|.-|..|+......+.+||+|.+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            4455999999876655 345565 9999999999999888899999987

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=85.47  E-value=0.87  Score=41.76  Aligned_cols=35  Identities=26%  Similarity=0.682  Sum_probs=20.6

Q ss_pred             CcccccccccccCCCceEecC----------CCCcc-ccchhHHHHHh
Q 014794          151 ALECAVCLSEFEDDETLRLLP----------KCDHV-FHPHCIDVWLA  187 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp----------~C~H~-FH~~CI~~WL~  187 (418)
                      +..|+|||+-=..  .+-++-          -|+-. =|..|+++.-+
T Consensus         2 d~~CpICme~PHN--AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHN--AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCc--eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            5689999987332  222110          15533 36789999763

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=84.82  E-value=0.6  Score=52.24  Aligned_cols=55  Identities=22%  Similarity=0.542  Sum_probs=40.8

Q ss_pred             CCCcccccccccccCCCceEecCCCC---ccccchhHHHHHhc--CCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCD---HVFHPHCIDVWLAS--HVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~---H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~  203 (418)
                      +++..|-||..+=..++.+.---+|.   ...|.+|+.+|+.-  ...|-+|..++.-++
T Consensus        10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            45678999999877766664322343   46899999999985  457999999886543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=84.27  E-value=1.3  Score=45.87  Aligned_cols=53  Identities=26%  Similarity=0.663  Sum_probs=32.7

Q ss_pred             CCCcccccccccccC-------------CCceEecCCC-----CccccchhHHHHHhc-------------CCCCCCccc
Q 014794          149 KGALECAVCLSEFED-------------DETLRLLPKC-----DHVFHPHCIDVWLAS-------------HVTCPVCRA  197 (418)
Q Consensus       149 ~~~~~CaICl~~f~~-------------~~~~r~lp~C-----~H~FH~~CI~~WL~~-------------~~tCP~CR~  197 (418)
                      .+.+.|--|+..-..             +......+.|     .-++|.+|+.+|+.+             +..||.||+
T Consensus       269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa  348 (358)
T PF10272_consen  269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA  348 (358)
T ss_pred             cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence            466789999886332             1011111223     345678899999864             346999999


Q ss_pred             ccCC
Q 014794          198 NLTP  201 (418)
Q Consensus       198 ~l~~  201 (418)
                      ....
T Consensus       349 ~FCi  352 (358)
T PF10272_consen  349 KFCI  352 (358)
T ss_pred             ccee
Confidence            7653

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.58  E-value=0.31  Score=53.14  Aligned_cols=45  Identities=24%  Similarity=0.599  Sum_probs=32.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      ....|.||+..|....-.-+-+.|||..|..|+..-  -+.+|| |..
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~   54 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR   54 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence            345799999998765533333469999999998874  467888 644

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=81.48  E-value=0.54  Score=45.81  Aligned_cols=50  Identities=28%  Similarity=0.588  Sum_probs=38.1

Q ss_pred             CCccccccccccc--CCCceEecCCCCccccchhHHHHHhc-CCCCC--Cccccc
Q 014794          150 GALECAVCLSEFE--DDETLRLLPKCDHVFHPHCIDVWLAS-HVTCP--VCRANL  199 (418)
Q Consensus       150 ~~~~CaICl~~f~--~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP--~CR~~l  199 (418)
                      .+..|+||-.+.-  ++..+.+-|.|.|..|.+|++.-+.. ...||  -|-+-+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            4568999988743  34456667789999999999999876 56799  785533

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=80.65  E-value=0.68  Score=45.73  Aligned_cols=50  Identities=26%  Similarity=0.778  Sum_probs=36.7

Q ss_pred             CcccccccccccCCCc-eEecCCCC-----ccccchhHHHHHh--cCCCCCCcccccCC
Q 014794          151 ALECAVCLSEFEDDET-LRLLPKCD-----HVFHPHCIDVWLA--SHVTCPVCRANLTP  201 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~-~r~lp~C~-----H~FH~~CI~~WL~--~~~tCP~CR~~l~~  201 (418)
                      +..|-||..+...... ..+.| |.     +..|..|++.|+.  ....|.+|......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            4689999998765432 33455 55     6779999999998  45679999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	418
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		1e-14
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-09
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-08
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		3e-08
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		4e-06
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		3e-05
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		8e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		9e-05

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196
            +ECAVCL+E ED E  R LP+C H FH  C+D+WL SH TCP+CR
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
           C VC+ +FE  + LR+LP C+H FH  C+D WL ++ TCP+CRA+  P S
Sbjct: 26  CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 140 SAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
           S+  +  +G G LEC VC  ++   E++R LP C+H+FH  CI  WL  H +CPVCR +L
Sbjct: 5   SSGTEEHVGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
Query: 200 T 200
           T
Sbjct: 63  T 63

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202
           +C +CLS  E+ E +R LP C H+FH  C+D WL ++  CP+CR ++  +
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201
           C +C SE+   +    LP C H FH  C+ +WL    TCPVCR    P
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
           L+C +C   F +  TL     C H F  +CI+ W+   + CP+CR ++  ++   V    
Sbjct: 54  LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV---- 105
Query: 212 SNNESNQTHNNSASEL 227
            +N  N+  NN +SE+
Sbjct: 106 LDNXINKMVNNLSSEV 121

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
           L+C +C   F +  TL     C H F  +CI+ W+   + CP+CR ++  ++   V    
Sbjct: 54  LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV---- 105
Query: 212 SNNESNQTHNNSASEL 227
            +N  N+  NN +SE+
Sbjct: 106 LDNCINKMVNNLSSEV 121

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195
           CAVCL +F+  + L + P C H FH  C+  WL     CP+C
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-34
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	3e-32
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-31
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	4e-28
2ect_A	78	Ring finger protein 126; metal binding protein, st	4e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-23
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	8e-21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-19
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-15
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-14
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	6e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-13
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	4e-13
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	6e-13
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	8e-12
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-10
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	3e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	4e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	4e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	2e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	3e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	4e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-06
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	6e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	1e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	4e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	5e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	7e-04
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	9e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  122 bits (307), Expect = 1e-34
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 129 SVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS 188
                 P + ++             C VC+ +FE  + LR+LP C+H FH  C+D WL +
Sbjct: 4   GSSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKA 59

Query: 189 HVTCPVCRANLTPES 203
           + TCP+CRA+  P S
Sbjct: 60  NRTCPICRADSGPSS 74

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  115 bits (290), Expect = 3e-32
 Identities = 28/52 (53%), Positives = 35/52 (67%)

Query: 148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
               +ECAVCL+E ED E  R LP+C H FH  C+D+WL SH TCP+CR  +
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  113 bits (285), Expect = 3e-31
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 118 AGLSRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVF 177
           + +  N       I++ P  + +  +D       + C +C SE+   +    LP C H F
Sbjct: 9   SHMVANPPASKESIDALPEILVT--EDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYF 65

Query: 178 HPHCIDVWLASHVTCPVCRANLTP 201
           H  C+ +WL    TCPVCR    P
Sbjct: 66  HKPCVSIWLQKSGTCPVCRCMFPP 89

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score =  104 bits (261), Expect = 4e-28
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESN 204
           +C +CLS  E+ E +R LP C H+FH  C+D WL ++  CP+CR ++  +  
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 99.4 bits (248), Expect = 4e-26
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNE 205
              LEC VC  ++   E++R LP C+H+FH  CI  WL  H +CPVCR +LT ++  
Sbjct: 13  GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 91.8 bits (228), Expect = 2e-23
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
            CAVCL +F+  + L + P C H FH  C+  WL     CP+C   +   +
Sbjct: 17  LCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 85.0 bits (210), Expect = 8e-21
 Identities = 12/49 (24%), Positives = 28/49 (57%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202
           C  C +E + ++ + +  +C+H FH  C+ +W+  +  CP+C+ +   +
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 80.5 bits (199), Expect = 3e-19
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 139 YSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRAN 198
             +   +K      EC +C+    D     +LP C H F   CID W   H  CP+CR  
Sbjct: 3   SGSSGRVKQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQ 57

Query: 199 LTPESNE 205
           +T  +  
Sbjct: 58  MTGANES 64

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 79.6 bits (197), Expect = 4e-19
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
            C +CL +      +  +  C H+ H  C +  L     CP+C    +
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
            C +CL +  +      LP C H F   CI  W+  + TCP+C+  + 
Sbjct: 7   RCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 150 GALECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202
           G + C +C+  + +      L    +C HVF   C+   L +  TCP CR  +  +
Sbjct: 14  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 65.2 bits (159), Expect = 6e-14
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 150 GALECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
             + C +C+  + +      L    +C HVF   C+   L +  TCP CR  +  + 
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 150 GALECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
           G + C +C+  + +      L    +C HVF   C+   L +  TCP CR  +  + 
Sbjct: 9   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 17/78 (21%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVCRANLTP--------- 201
             C +C+ +  D    RL P C  +    CI  WL      CP CRA L           
Sbjct: 23  FRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79

Query: 202 ----ESNEKVKLCDSNNE 215
               +  + ++LC     
Sbjct: 80  EEVTQQLDTLQLCSLTKH 97

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 63.7 bits (154), Expect = 6e-13
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196
           C    +    +E       C+H FH HCI  WL +   CP+  
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 61.0 bits (147), Expect = 8e-12
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196
           C    +    +E       C+H FH HCI  WL +   CP+  
Sbjct: 65  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
           + C++C     D  T+    +C H F   CI         CP C   + 
Sbjct: 16  ILCSICKGYLIDATTI---TECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 139 YSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRAN 198
             +  +        ECA+CL       +L     C HVF   C+         C +CR  
Sbjct: 3   SGSSGNTAPSLTVPECAICLQTCVHPVSL----PCKHVFCYLCVKGASWLGKRCALCRQE 58

Query: 199 LTPE 202
           +  +
Sbjct: 59  IPED 62

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--VTCPVCRANL 199
               C +C S     ++      C    H  C+  +  S+    CP C    
Sbjct: 14  AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRAN 198
             C +C   F++        KC H F   C      +   C +C   
Sbjct: 16  FRCFICRQAFQNPVVT----KCRHYFCESCALEHFRATPRCYICDQP 58

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 57.2 bits (137), Expect = 3e-09
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 15/73 (20%)

Query: 143 KDLKIGKGALECAVCLSEFEDDETLRLL----PKCDHVFHPHCIDVWLAS---------- 188
           K  +     L C +C +   D   + L+     KC    H  C++ W  +          
Sbjct: 300 KLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEV 359

Query: 189 -HVTCPVCRANLT 200
               CP C+A L+
Sbjct: 360 SFGQCPFCKAKLS 372

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 148 GKGALECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHVTCPVCRANLTPESN 204
           G G + C +C+  + +      L    +C HVF   C+   L +  TCP CR  +  +  
Sbjct: 4   GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63

Query: 205 EKVKLCDSNNE 215
             + +      
Sbjct: 64  HPIYIGSGTVS 74

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 152 LECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
           + C +C+  + +      L    +C HVF   C+   L +  TCP CR  +  + 
Sbjct: 73  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
           L C +C   F D  T+    +C H F   CI  +L +   CP+C   +
Sbjct: 16  LMCVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQV 60

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 19/64 (29%)

Query: 153 ECAVCLSEFED--------------DETLRLLPKCDHVFHPHCIDVWLAS-----HVTCP 193
           +C +C+ +                    +  L KC H FH  C+     +      + CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 194 VCRA 197
            C+ 
Sbjct: 87  SCKT 90

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
           L+C +C   F +  TL     C H F  +CI+ W+   + CP+CR        + +K   
Sbjct: 65  LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICR--------KDIKSKT 112

Query: 212 SNNESNQTHNNSASELSGE 230
            +   +   N   + LS E
Sbjct: 113 YSLVLDNCINKMVNNLSSE 131

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
           L C +C   F       ++P+C H +   CI  +L+    CP C   +T   
Sbjct: 23  LRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTPES 203
             C +C    +D   +++ P C H+    C+  W  S    CP CR  +    
Sbjct: 333 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 152 LECAVCLSEFEDDETL-RLLPKCDHVFHPHCIDVWLAS---HVTCPVCR 196
           LEC +C+  F +++   +LL  C H     C++  LAS    V CP C 
Sbjct: 16  LECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCS 63

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTPES 203
            +C  C       +      +C H F   C+   L+S    C  C+ ++  + 
Sbjct: 16  YKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV--TCPVCRANLTP 201
           L C +C     D     ++P C + +   CI   L      TCP C  N   
Sbjct: 16  LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 126 LDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW 185
           ++P    ++     +A+  L+     L C+ C +   +   L     C+H+F  +C+   
Sbjct: 1   MEPDGRGAWAH-SRAALDRLE---KLLRCSRCTNILREPVCL---GGCEHIFCSNCVSDC 53

Query: 186 LASHVTCPVCRANLTPES 203
           + +   CPVC      + 
Sbjct: 54  IGT--GCPVCYTPAWIQD 69

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 5/58 (8%)

Query: 147 IGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV--TCPVCRANLTPE 202
                  C +C S     ++      C    H  C+  +  S+    CP C      E
Sbjct: 176 YPDAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197
           L C  C +E +     +LLP C H     C++   AS + CP+C+A
Sbjct: 7   LRCQQCQAEAKC---PKLLP-CLHTLCSGCLE---ASGMQCPICQA 45

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 16/66 (24%), Gaps = 11/66 (16%)

Query: 152 LECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHV-TCPVCRANLTPESNEKV 207
            EC +CL    +            C H F   CI   +      CPV    L        
Sbjct: 19  YECPICLMALRE-------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 208 KLCDSN 213
                 
Sbjct: 72  NFAKRE 77

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTP 201
            +C  C        T      C H     C+D    + V +CP CR +L  
Sbjct: 53  FQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--------VTCPVC 195
           G+  C +CL E+  ++   +  +C  +F   C+  ++           ++CP  
Sbjct: 4   GSSGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 5/63 (7%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTPESNEKVKLC 210
            EC +CL    +     +   C H F   CI   +      CPV    L           
Sbjct: 19  YECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 211 DSN 213
              
Sbjct: 75  KRE 77

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH-VTCPVCRANLTPE 202
           + C +C     D         C H+F   CI   L      CP CR    P 
Sbjct: 24  ISCQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV--TCPVCRANLTP 201
           L C +C     D     ++P C + +   CI   L      TCP C  N   
Sbjct: 14  LLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPES 203
           +EC +C+   E D+       C +     C        +  CP CR     + 
Sbjct: 12  VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCI-DVWLASHVTCPVCRANLTPES 203
            +C +C+    +  TL     C+H     C       + + CP CR  ++  +
Sbjct: 16  CQCGICMEILVEPVTLP----CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWT 64

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTPESN 204
           L C +CL   ++  T     +C H F   CI   L S    CP CR  L  + +
Sbjct: 55  LMCPICLDMLKNTMTT---KECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTP 201
             C  C        T     +C H     C+     + V +CP CR +L  
Sbjct: 79  FMCVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 154 CAVCLSEFEDDETLRLLPKCD---HVFHPHCIDVWLAS--HVTCPVCRA 197
           C +C  E +D+  L     C    H  H  C+  W+ S     C +C+ 
Sbjct: 18  CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKY 66

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202
            + CA+            L PK   +F    ++ ++      P+    L+ E
Sbjct: 3   HMLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLTPES 203
           + C +CL   +   T+     C H F   CI     +      CP+C+ ++   +
Sbjct: 21  VICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 152 LECAVCLSEFEDDETLRLL-PKCDHVFHPHCIDVWLASH-VTCPVCRANL 199
             C  C +    + +L+L+   C H     C+D+        CP C   L
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 11/74 (14%)

Query: 152 LECAVCLSEFEDDETLRLLP---KCDHVFHPHCIDVWLASHV-TCPVCRANLTPESNEKV 207
             C+ C +           P   +C H +   C+   L+S    C  C      E    +
Sbjct: 32  YLCSACRNVLRR-------PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84

Query: 208 KLCDSNNESNQTHN 221
               S    N    
Sbjct: 85  LESSSAFPDNAARR 98

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRANLTPESN 204
           C  C    ED + L +   CD  +H  C+   + S       C  CR  ++  S+
Sbjct: 57  CQNCKQSGEDSKML-VCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPSS 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.61
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.57
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.45
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.42
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.42
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.41
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.4
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.34
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.32
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.29
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.25
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.24
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.24
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.22
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.2
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.17
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.16
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.15
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.13
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.13
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.05
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.03
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.03
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.01
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.99
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.99
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.96
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.95
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.95
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.94
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.92
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.91
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.89
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.88
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.86
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.84
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.84
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.83
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.77
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.72
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.7
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.7
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.7
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.68
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.67
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.66
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.65
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.62
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.6
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.6
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.59
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.58
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.58
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.44
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.43
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.4
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.34
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.32
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.32
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.29
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.22
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.18
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.07
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.89
3nw0_A	238	Non-structural maintenance of chromosomes element	97.65
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.59
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.58
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	92.54
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.49
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	86.15
1we9_A	64	PHD finger family protein; structural genomics, PH	85.47
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	83.59
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	83.17
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	82.75
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	81.08

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.61  E-value=5.1e-16  Score=126.86  Aligned_cols=78  Identities=29%  Similarity=0.691  Sum_probs=67.9

Q ss_pred             ccCCCCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          121 SRNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       121 sr~rgl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ....|++++.|+.||.+.+.....  ......+|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+.
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             cCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            447899999999999998876443  2246778999999999999999998 9999999999999999999999999886


Q ss_pred             C
Q 014794          201 P  201 (418)
Q Consensus       201 ~  201 (418)
                      .
T Consensus        89 ~   89 (91)
T 2l0b_A           89 P   89 (91)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=7.5e-16  Score=120.89  Aligned_cols=69  Identities=36%  Similarity=0.916  Sum_probs=59.2

Q ss_pred             HHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          130 VIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       130 ~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .++.+|.+.|.....   ..+..+|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+++.+.
T Consensus         5 ~i~~lp~~~~~~~~~---~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSSC---SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCccc---cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            366889888876433   236779999999999999889998 999999999999999999999999988754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.45  E-value=4.9e-14  Score=103.60  Aligned_cols=51  Identities=55%  Similarity=1.258  Sum_probs=46.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +..+|+||++.|..++.+..++.|+|.||..||..|+..+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            567899999999998888888779999999999999999999999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=6.7e-14  Score=112.02  Aligned_cols=53  Identities=25%  Similarity=0.773  Sum_probs=44.3

Q ss_pred             CCCcccccccccccC-----------CCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFED-----------DETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~-----------~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      .+++.|+||+++|.+           ++.++.++.|+|.||.+||+.||..+.+||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            456789999999864           34466666799999999999999999999999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.3e-13  Score=107.43  Aligned_cols=53  Identities=34%  Similarity=0.828  Sum_probs=48.2

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      ....+|+||++.|..++.+.++| |+|.||..||..|+..+.+||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            35779999999999988888898 999999999999999999999999988653

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.41  E-value=1.6e-13  Score=105.57  Aligned_cols=53  Identities=40%  Similarity=1.035  Sum_probs=48.1

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      ....+|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||..+...
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            46678999999999888888898 999999999999999999999999988754

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.40  E-value=2.4e-13  Score=107.02  Aligned_cols=54  Identities=46%  Similarity=1.059  Sum_probs=48.6

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      ....+|+||++.|...+.++.++ |+|.||..||..|+..+.+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            35779999999999988888898 9999999999999999999999999987543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.34  E-value=3.7e-13  Score=113.58  Aligned_cols=67  Identities=28%  Similarity=0.526  Sum_probs=53.5

Q ss_pred             hCCceeeecccccccCCCCcccccccccccCCC---------------ceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794          133 SFPIFVYSAVKDLKIGKGALECAVCLSEFEDDE---------------TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA  197 (418)
Q Consensus       133 ~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~---------------~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~  197 (418)
                      .+....++.+.......+++.|+||++.|...-               .++.++ |+|.||..||+.||..+.+||+||+
T Consensus        19 r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~   97 (106)
T 3dpl_R           19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNR   97 (106)
T ss_dssp             SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCS
T ss_pred             ceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCC
Confidence            344555666666666667889999999998541               255666 9999999999999999999999999


Q ss_pred             ccC
Q 014794          198 NLT  200 (418)
Q Consensus       198 ~l~  200 (418)
                      ++.
T Consensus        98 ~~~  100 (106)
T 3dpl_R           98 EWE  100 (106)
T ss_dssp             BCC
T ss_pred             cce
Confidence            864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.32  E-value=1e-12  Score=110.75  Aligned_cols=53  Identities=23%  Similarity=0.624  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCC---------------ceEecCCCCccccchhHHHHHh-----cCCCCCCcccccCCCC
Q 014794          150 GALECAVCLSEFEDDE---------------TLRLLPKCDHVFHPHCIDVWLA-----SHVTCPVCRANLTPES  203 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~---------------~~r~lp~C~H~FH~~CI~~WL~-----~~~tCP~CR~~l~~~~  203 (418)
                      .+.+|+||++.|....               .+++++ |+|+||..||..|+.     .+.+||+||+.+....
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            4568999999997643               344676 999999999999994     4678999999886543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.29  E-value=2e-12  Score=94.78  Aligned_cols=50  Identities=28%  Similarity=0.815  Sum_probs=43.4

Q ss_pred             CCcccccccccccCCC-ceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ...+|+||++.+.+++ .+..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            5678999999997644 566777 9999999999999999999999998764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.25  E-value=5.4e-13  Score=114.55  Aligned_cols=69  Identities=28%  Similarity=0.496  Sum_probs=12.3

Q ss_pred             hCCceeeecccccccCCCCcccccccccccCC-------------C-ceEecCCCCccccchhHHHHHhcCCCCCCcccc
Q 014794          133 SFPIFVYSAVKDLKIGKGALECAVCLSEFEDD-------------E-TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRAN  198 (418)
Q Consensus       133 ~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~-------------~-~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~  198 (418)
                      .+...+++.+.....+..++.|+||+++|.+.             + ..++++.|+|.||..||+.||..+.+||+||++
T Consensus        30 r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~  109 (117)
T 4a0k_B           30 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE  109 (117)
T ss_dssp             SEEEEEEEEEEEEEECCCC-------------------------------------------------------------
T ss_pred             ceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence            44455666676666777788999999999752             2 122223499999999999999999999999998


Q ss_pred             cCC
Q 014794          199 LTP  201 (418)
Q Consensus       199 l~~  201 (418)
                      +..
T Consensus       110 ~~~  112 (117)
T 4a0k_B          110 WEF  112 (117)
T ss_dssp             ---
T ss_pred             eee
Confidence            653

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3.7e-12  Score=97.20  Aligned_cols=51  Identities=27%  Similarity=0.768  Sum_probs=43.8

Q ss_pred             CCCcccccccccccCC----CceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDD----ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~----~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      .+..+|+||++.|.+.    ..+.+++ |+|.||..||..|+..+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            3677899999999863    3446676 9999999999999999999999999875

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.24  E-value=2.5e-12  Score=98.97  Aligned_cols=53  Identities=26%  Similarity=0.740  Sum_probs=45.2

Q ss_pred             CCCcccccccccccCC----CceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDD----ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~----~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .+..+|+||++.+.+.    +....++ |+|.||..||..|+..+.+||+||..+...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            3677899999998763    4456776 999999999999999999999999988754

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.22  E-value=3.6e-12  Score=95.83  Aligned_cols=53  Identities=25%  Similarity=0.691  Sum_probs=44.8

Q ss_pred             CCcccccccccccCC----CceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          150 GALECAVCLSEFEDD----ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       150 ~~~~CaICl~~f~~~----~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      +..+|+||++.+.+.    +.+..++ |+|.||..||..|+..+.+||+||..+....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            457899999999763    3456676 9999999999999999999999999887543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=9.4e-12  Score=99.83  Aligned_cols=53  Identities=28%  Similarity=0.767  Sum_probs=44.7

Q ss_pred             CCCcccccccccccCCCceEecCCCC-----ccccchhHHHHHhcC--CCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCD-----HVFHPHCIDVWLASH--VTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~-----H~FH~~CI~~WL~~~--~tCP~CR~~l~~~~  203 (418)
                      .++..|.||+++|.+++.+ ++| |+     |.||.+||+.||..+  .+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            3567899999999887776 578 86     999999999999875  48999999986543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=6.5e-12  Score=96.74  Aligned_cols=49  Identities=39%  Similarity=0.967  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .+..+|+||++.+.+    ..+| |+|.||..||..|+..+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            357799999999877    5677 999999999999999999999999988743

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.16  E-value=2.1e-11  Score=93.26  Aligned_cols=49  Identities=33%  Similarity=0.786  Sum_probs=42.7

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +...+|+||++.+.+  ....+| |+|.||..||..|+..+.+||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            356789999999875  346777 9999999999999999999999999885

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.4e-11  Score=94.36  Aligned_cols=51  Identities=22%  Similarity=0.485  Sum_probs=42.9

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      .+...|+||++.+.+  .+.+++ |+|.||..||..|+..+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            356789999999886  233346 999999999999999999999999988654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.9e-11  Score=94.67  Aligned_cols=49  Identities=31%  Similarity=0.584  Sum_probs=42.7

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      .+..+|+||++.+.+   ...++ |+|.||..||..|+..+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            356789999999866   45667 99999999999999999999999998863

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=6.9e-11  Score=94.44  Aligned_cols=53  Identities=32%  Similarity=0.793  Sum_probs=45.4

Q ss_pred             CCCcccccccccccCCCc-eEecCCCCccccchhHHHHHhcC---CCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDET-LRLLPKCDHVFHPHCIDVWLASH---VTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~-~r~lp~C~H~FH~~CI~~WL~~~---~tCP~CR~~l~~~  202 (418)
                      .+..+|+||++.|.+.+. .+.++ |+|.||..||..|+..+   .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            356789999999998764 66777 99999999999999976   7899999987653

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=8.7e-11  Score=90.86  Aligned_cols=50  Identities=22%  Similarity=0.633  Sum_probs=41.9

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHh---cCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA---SHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~---~~~tCP~CR~~l~~~  202 (418)
                      .+...|+||++.+.+   ...++ |+|.||..||..|+.   .+..||+||..+...
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            367799999999885   55566 999999999999997   456899999988643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=9.5e-11  Score=92.91  Aligned_cols=48  Identities=19%  Similarity=0.502  Sum_probs=42.1

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      .....|+||++.|.+   ..+++ |+|.||..||..|+....+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            356789999999876   44677 9999999999999999999999999885

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=90.99  Aligned_cols=48  Identities=29%  Similarity=0.662  Sum_probs=40.5

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC--CCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--VTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~--~tCP~CR~~l~  200 (418)
                      +...|+||++.|.+   .+.++.|+|.||..||..|+..+  .+||+||+.+.
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            56789999999986   34465699999999999999875  68999999654

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1e-10  Score=92.53  Aligned_cols=50  Identities=22%  Similarity=0.549  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC--CCCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--VTCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~--~tCP~CR~~l~~~  202 (418)
                      ...+|+||++.|..++...   .|+|.||..||..||+.+  .+||+||+++...
T Consensus        14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            5678999999999765443   599999999999999987  7999999987643

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.4e-10  Score=88.41  Aligned_cols=50  Identities=20%  Similarity=0.559  Sum_probs=41.4

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHh-cCCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~CR~~l~~~  202 (418)
                      .+...|+||++.+.+..   .++ |||.||..||..|+. .+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            35678999999988643   356 999999999999995 567899999988653

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.03  E-value=8e-11  Score=102.92  Aligned_cols=48  Identities=31%  Similarity=0.915  Sum_probs=42.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ++..|+||++.|.+   .+.+| |||.||..||..|+..+.+||+||.++..
T Consensus        52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            34579999999976   56677 99999999999999999999999998853

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.01  E-value=1.5e-10  Score=98.67  Aligned_cols=54  Identities=26%  Similarity=0.725  Sum_probs=45.8

Q ss_pred             CCCcccccccccccCC----CceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDD----ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~----~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      .+..+|+||++.|.+.    +.++.++ |||.||..||..|+..+.+||+||+.+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            3677999999999764    4456776 9999999999999999999999999886544

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.99  E-value=4.9e-10  Score=88.44  Aligned_cols=49  Identities=29%  Similarity=0.665  Sum_probs=42.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc------CCCCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS------HVTCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~------~~tCP~CR~~l~~~  202 (418)
                      +...|+||++.+.+.   ..++ |+|.||..||..|+..      ...||+||..+...
T Consensus        18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            567899999998763   3677 9999999999999988      67899999988643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=5.1e-10  Score=88.37  Aligned_cols=48  Identities=29%  Similarity=0.732  Sum_probs=41.6

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc------CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS------HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~------~~tCP~CR~~l~~  201 (418)
                      +..+|+||++.+.+   ...++ |+|.||..||..|+..      ...||+||..+..
T Consensus        18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           18 EEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            56799999999876   34566 9999999999999987      7899999998874

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.96  E-value=3.8e-10  Score=88.53  Aligned_cols=48  Identities=23%  Similarity=0.552  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      +...|+||++.|.+   ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus         7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            57789999999876   45567 9999999999999987 7889999998864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.95  E-value=2.9e-10  Score=94.14  Aligned_cols=48  Identities=33%  Similarity=0.827  Sum_probs=41.4

Q ss_pred             CCcccccccccccCCCceEe-cCCCCccccchhHHHHHhcC-CCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRL-LPKCDHVFHPHCIDVWLASH-VTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~-lp~C~H~FH~~CI~~WL~~~-~tCP~CR~~l~~  201 (418)
                      +...|+||++.|.+   .+. ++ |||.||..||..|+..+ .+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            46789999999976   445 66 99999999999999987 699999998853

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.95  E-value=2.3e-10  Score=89.62  Aligned_cols=49  Identities=27%  Similarity=0.633  Sum_probs=41.7

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-------CCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-------HVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-------~~tCP~CR~~l~~  201 (418)
                      .+..+|+||++.|.+.   +.++ |||.||..||..|+..       ...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            3678999999998763   3467 9999999999999987       6689999998865

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=5.6e-10  Score=84.77  Aligned_cols=52  Identities=19%  Similarity=0.549  Sum_probs=41.5

Q ss_pred             CCcccccccc-cccCCCce-EecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794          150 GALECAVCLS-EFEDDETL-RLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~-~f~~~~~~-r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~  202 (418)
                      ++..|+||++ .+...... .+++ |||.||..||..|+.. ...||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            4568999999 77765543 4466 9999999999999765 46799999988654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=6.3e-10  Score=83.86  Aligned_cols=43  Identities=26%  Similarity=0.688  Sum_probs=36.6

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHh---cCCCCCCc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA---SHVTCPVC  195 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~---~~~tCP~C  195 (418)
                      .+...|+||++.+.+   .++++ |+|.||..||..|+.   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            367799999999886   44566 999999999999998   45689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.92  E-value=3.3e-10  Score=96.54  Aligned_cols=54  Identities=28%  Similarity=0.767  Sum_probs=45.1

Q ss_pred             CCCCcccccccccccCC----CceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          148 GKGALECAVCLSEFEDD----ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       148 ~~~~~~CaICl~~f~~~----~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      ..+...|+||++.|.+.    .....++ |+|.||..||+.|+..+.+||+||.++...
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            34678899999998763    3345666 999999999999999999999999988654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.91  E-value=5.8e-10  Score=91.61  Aligned_cols=49  Identities=29%  Similarity=0.796  Sum_probs=41.4

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      +...|+||++.|.+   ...++.|||.||..||..|+..+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            45689999999886   34442399999999999999999999999998764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.89  E-value=6.9e-10  Score=92.68  Aligned_cols=50  Identities=28%  Similarity=0.665  Sum_probs=42.3

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      +...|+||++.|.+  .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            56789999999876  233346 999999999999999999999999988643

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=8.6e-10  Score=81.31  Aligned_cols=43  Identities=33%  Similarity=0.896  Sum_probs=36.0

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHh---cCCCCCCc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA---SHVTCPVC  195 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~---~~~tCP~C  195 (418)
                      .+...|+||++.+.+.   +.++ |+|.||..||..|+.   .+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3567999999999874   4466 999999999999954   56789998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.86  E-value=1.2e-09  Score=93.44  Aligned_cols=48  Identities=25%  Similarity=0.575  Sum_probs=40.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCC-CCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~-tCP~CR~~l~~  201 (418)
                      +...|+||++.|.+   .+.++ |||.||..||..|+..+. +||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            45689999999986   45667 999999999999998654 89999998864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.84  E-value=2.1e-09  Score=86.83  Aligned_cols=49  Identities=29%  Similarity=0.645  Sum_probs=40.6

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcC--CCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--VTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~--~tCP~CR~~l~  200 (418)
                      .+...|+||++.|.+   .+.++.|||.||..||..|+..+  ..||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            367899999999986   34565599999999999999753  58999998863

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.84  E-value=1.7e-09  Score=90.20  Aligned_cols=48  Identities=31%  Similarity=0.792  Sum_probs=40.1

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCC---CCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV---TCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~---tCP~CR~~l~~  201 (418)
                      +...|+||++.+.+.   ..++ |||.||..||..|+..+.   +||+||..+..
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            356899999998763   3466 999999999999998754   89999998764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.83  E-value=3.1e-09  Score=95.16  Aligned_cols=49  Identities=35%  Similarity=0.741  Sum_probs=41.2

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ....|+||++.|.+  .+.+++ |||.||..||..|+.. +.+||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            45689999999886  344446 9999999999999997 7789999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.77  E-value=3.4e-09  Score=94.23  Aligned_cols=49  Identities=22%  Similarity=0.534  Sum_probs=41.5

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCC-CCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~-tCP~CR~~l~~~  202 (418)
                      +...|+||++.|.+   ...++ |+|.||..||..|+.... +||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            45689999999876   45577 999999999999999754 899999988754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.72  E-value=4.1e-09  Score=89.51  Aligned_cols=48  Identities=29%  Similarity=0.580  Sum_probs=41.3

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCC-CCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~-tCP~CR~~l~~  201 (418)
                      +...|+||++.+.+   .+.++ |||.||..||..|+.... +||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           17 SKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            56789999999876   35567 999999999999998765 99999998864

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.70  E-value=2.1e-09  Score=90.65  Aligned_cols=48  Identities=23%  Similarity=0.734  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ++..|+||++.+.+   .+.++ |||.||..||..|+.. +.+||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            45789999999876   45567 9999999999999977 6789999998853

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.70  E-value=5.9e-09  Score=87.97  Aligned_cols=48  Identities=29%  Similarity=0.599  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      +...|+||++.+.+   ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus        22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            35689999999876   44576 9999999999999997 7799999998764

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.70  E-value=5.5e-09  Score=79.77  Aligned_cols=47  Identities=19%  Similarity=0.459  Sum_probs=39.9

Q ss_pred             CCcccccccccccCCCceEec--CCCCcc-ccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLL--PKCDHV-FHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~l--p~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ++.+|.||++.+.+   ..++  | |||. |+..|+..|...+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            45689999998765   3444  8 9999 799999999998899999999874

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.68  E-value=9e-09  Score=104.57  Aligned_cols=48  Identities=25%  Similarity=0.771  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHh-cCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~CR~~l~~  201 (418)
                      ...+|+||++.+.+   ...+| |||.||..||..|+. .+.+||+||..+..
T Consensus       331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            34689999999865   66777 999999999999999 68899999998864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.67  E-value=7e-09  Score=76.92  Aligned_cols=48  Identities=29%  Similarity=0.661  Sum_probs=39.9

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      .+...|+||++.|.+   .+.+| |+|.||..||..|   ...||+||+.+....
T Consensus         4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            467789999999987   35677 9999999999884   678999999887543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.66  E-value=1.2e-08  Score=82.19  Aligned_cols=48  Identities=23%  Similarity=0.155  Sum_probs=43.1

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ....|+||++.|.+   .++++ |||.|+..||..|+..+.+||+|+..+..
T Consensus        13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            57899999999998   66787 99999999999999999999999987753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.65  E-value=1.3e-08  Score=84.70  Aligned_cols=48  Identities=21%  Similarity=0.171  Sum_probs=43.2

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ....|+||++.|.+   .++++ |||.|+..||..|+..+.+||+|+.++..
T Consensus        28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            57899999999998   66777 99999999999999999999999998764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.62  E-value=2e-08  Score=83.25  Aligned_cols=48  Identities=23%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CCcccccccccccCCCceEecCCCC-ccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCD-HVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~-H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      +...|+||++.|.+   .++++ || |.|+..||..|+..+.+||+||.++..
T Consensus        21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            57789999999998   56677 99 999999999999998999999988763

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.60  E-value=3.5e-08  Score=78.47  Aligned_cols=53  Identities=21%  Similarity=0.492  Sum_probs=41.0

Q ss_pred             CCCcccccccccccCCCce-EecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETL-RLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~-r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~  202 (418)
                      .++.+|+||++.+...+.. .-++ |||.||..|+..|+.. +..||+||+.+...
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            3667899999998654332 2234 9999999999998754 56899999988754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.60  E-value=1.5e-08  Score=77.05  Aligned_cols=49  Identities=18%  Similarity=0.428  Sum_probs=39.5

Q ss_pred             CCcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ...+|.||++...+. .+..+| |||. |+..|+..|...+..||+||+++.
T Consensus         6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            456899999986552 122238 9998 999999999988889999999874

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.59  E-value=1.2e-08  Score=101.76  Aligned_cols=53  Identities=26%  Similarity=0.645  Sum_probs=41.2

Q ss_pred             CCCcccccccccccCCCce----EecCCCCccccchhHHHHHhcC-----------CCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETL----RLLPKCDHVFHPHCIDVWLASH-----------VTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~----r~lp~C~H~FH~~CI~~WL~~~-----------~tCP~CR~~l~~  201 (418)
                      ++..+|+||++.+.++..+    -..++|+|.||..||.+||.+.           .+||+||+++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4677999999999873322    1223699999999999999852           369999998863

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.58  E-value=1.5e-08  Score=85.78  Aligned_cols=45  Identities=27%  Similarity=0.696  Sum_probs=38.7

Q ss_pred             CCcccccccccccCCCceEec-CCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLL-PKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~l-p~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +...|+||++.|.+   .+.+ + |||.||..||..|+.  ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            46789999999976   3445 6 999999999999987  78999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.58  E-value=1.7e-08  Score=88.94  Aligned_cols=50  Identities=20%  Similarity=0.449  Sum_probs=41.8

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCC-CCCCcccccCCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTPE  202 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~-tCP~CR~~l~~~  202 (418)
                      .+...|+||++.+.+.   ..++ |||.||..||..|+.... +||+||.++...
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            3677999999999874   4566 999999999999998764 899999987543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.52  E-value=3.1e-08  Score=77.50  Aligned_cols=43  Identities=23%  Similarity=0.686  Sum_probs=37.4

Q ss_pred             CCcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +...|+||++.+.+   ...+| |||. ||..|+..|    ..||+||..+.
T Consensus        23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            45689999998776   66778 9999 999999998    88999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.44  E-value=9e-08  Score=91.14  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=41.5

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ....|+||++.|.+   .+++| |||.||..||..|+.. +.+||+||.++..
T Consensus       207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            57789999999988   66787 9999999999999986 4459999998853

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.43  E-value=1.3e-07  Score=71.57  Aligned_cols=48  Identities=21%  Similarity=0.634  Sum_probs=37.7

Q ss_pred             CCCcccccccccccCCCceEecCCCC--c---cccchhHHHHHhc--CCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCD--H---VFHPHCIDVWLAS--HVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~--H---~FH~~CI~~WL~~--~~tCP~CR~~l~  200 (418)
                      ++...|.||+++.  ++.+ ++| |.  |   .||..||..|+..  +.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4667899999983  3334 577 65  4   9999999999975  678999998764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1e-07  Score=78.02  Aligned_cols=48  Identities=19%  Similarity=0.467  Sum_probs=39.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC------CCCCC--cccc-cC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH------VTCPV--CRAN-LT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~------~tCP~--CR~~-l~  200 (418)
                      ....|+||++.|.+   .++++.|||.|+..||..|+..+      .+||+  |+.. +.
T Consensus         6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            56789999999987   55564599999999999999864      48999  9866 43

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.34  E-value=1.6e-07  Score=84.20  Aligned_cols=48  Identities=29%  Similarity=0.589  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC-CCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH-VTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~-~tCP~CR~~l~~  201 (418)
                      +...|+||++.+.+   .+.++ |||.||..||..|+... .+||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            56799999999887   34576 99999999999999874 499999998764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=4.1e-07  Score=70.24  Aligned_cols=45  Identities=29%  Similarity=0.758  Sum_probs=37.8

Q ss_pred             CCCcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      .+...|.||++...+   +.++| |+|. |+..|+..    ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            356789999998665   77888 9999 99999984    5789999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.32  E-value=2.2e-07  Score=75.62  Aligned_cols=48  Identities=23%  Similarity=0.755  Sum_probs=40.4

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc--------CCCCCC--cccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPV--CRAN  198 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~--CR~~  198 (418)
                      +..+|+||++++...+.+.+.+ |+|.||..|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            5678999999998877776666 9999999999999874        237999  9986

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=2.5e-07  Score=72.28  Aligned_cols=44  Identities=23%  Similarity=0.646  Sum_probs=36.3

Q ss_pred             CCcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      +..+|+||++.+.+   ...+| |+|. ||..|+..    ...||+||..+..
T Consensus        24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            35689999999766   55677 9999 99999964    4789999998854

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.22  E-value=5.1e-07  Score=82.73  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC-CCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH-VTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~-~tCP~CR~~l~~  201 (418)
                      ....|+||++.|.+   .+++| |||.|+..||..|+..+ .+||+|+.++..
T Consensus       105 ~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            56789999999997   56677 99999999999999874 479999988753

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.18  E-value=4.6e-07  Score=71.97  Aligned_cols=44  Identities=32%  Similarity=0.717  Sum_probs=37.1

Q ss_pred             CCcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      +...|.||++.+.+   ...+| |||. |+..|+..|    ..||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            34589999998766   67788 9999 999999987    499999998864

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.07  E-value=1e-06  Score=88.38  Aligned_cols=43  Identities=26%  Similarity=0.760  Sum_probs=37.8

Q ss_pred             CCcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      +...|+||++.+.+   ...+| |||. ||..|+..|    ..||+||..+.
T Consensus       294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            56789999999876   66778 9999 999999998    78999999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.05  E-value=1.8e-06  Score=65.38  Aligned_cols=48  Identities=19%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794          152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE  202 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~  202 (418)
                      ..|+||++.+.+   ..+++.|||+|...||..|+..+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            579999999986   455623999999999999999988999999988643

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.89  E-value=3.7e-06  Score=81.16  Aligned_cols=49  Identities=27%  Similarity=0.535  Sum_probs=39.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC--CCCCC--cccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--VTCPV--CRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~--~tCP~--CR~~l~~  201 (418)
                      ....|+||++.|.+.  ++... |||.|+..||..|+..+  .+||+  |+..+..
T Consensus       180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            567899999999773  43344 99999999999999864  47999  9997753

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.65  E-value=4.1e-05  Score=72.98  Aligned_cols=50  Identities=22%  Similarity=0.555  Sum_probs=40.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCC--CCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV--TCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~--tCP~CR~~l~~~  202 (418)
                      ...+|+||.+.+..+..+   +.|+|.||..|+..|+..+.  .||.|+..+...
T Consensus       179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            467899999998876433   45999999999999998754  899999987543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.59  E-value=3.4e-05  Score=63.95  Aligned_cols=45  Identities=27%  Similarity=0.564  Sum_probs=37.5

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccC
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLT  200 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~  200 (418)
                      -|.+|--.+..  ..|.+| |+|+|+.+|+..|.++ .++||.|+.++.
T Consensus         3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            47888766554  578898 9999999999999865 688999999885

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.58  E-value=0.025  Score=43.25  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=36.0

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCcccccCC
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRANLTP  201 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~l~~  201 (418)
                      .....|.||.+.    ..+..-..|...||..|++..|..    .-.||.|.....+
T Consensus        10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C           10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            355679999753    335555579999999999988865    3479999765543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.49  E-value=0.17  Score=40.73  Aligned_cols=35  Identities=14%  Similarity=0.435  Sum_probs=25.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHH
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW  185 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~W  185 (418)
                      ++..|.||++.+.......-++ |+|.|+..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            3568999998754333333365 9999999999983

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=86.15  E-value=0.57  Score=42.10  Aligned_cols=46  Identities=35%  Similarity=0.553  Sum_probs=34.3

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCccccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRANL  199 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~l  199 (418)
                      +++.|.+|...   ++ +.....|...||..|+.+-+..    .-.||.|+..-
T Consensus         3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            45679999854   33 5555679999999999887664    34699998644

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=85.47  E-value=0.29  Score=36.46  Aligned_cols=49  Identities=24%  Similarity=0.584  Sum_probs=35.6

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHh-----cCCCCCCccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-----SHVTCPVCRA  197 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-----~~~tCP~CR~  197 (418)
                      .+...|+||...+.++...+.-..|..-||..|+..-..     ....||.|+.
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            356679999998865554555556999999999875432     3567999975

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=83.59  E-value=0.53  Score=35.01  Aligned_cols=45  Identities=24%  Similarity=0.586  Sum_probs=33.2

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRA  197 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~  197 (418)
                      ..+..|.||...    ..+..-..|...||..|+..-+..    .-.||.|..
T Consensus         9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            356789999863    345555579999999999986543    346999965

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=83.17  E-value=0.37  Score=44.25  Aligned_cols=47  Identities=34%  Similarity=0.486  Sum_probs=34.9

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCccccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRANL  199 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~l  199 (418)
                      ..+..|.+|...    ..+.....|...||..|+.+.+..    .-.||.|+..-
T Consensus         5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            356789999743    335566679999999999887764    34799998643

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=82.75  E-value=0.57  Score=42.61  Aligned_cols=47  Identities=28%  Similarity=0.593  Sum_probs=34.8

Q ss_pred             cccccccccccCCCc---eEecCCCCccccchhHHHH------Hh-----cCCCCCCcccc
Q 014794          152 LECAVCLSEFEDDET---LRLLPKCDHVFHPHCIDVW------LA-----SHVTCPVCRAN  198 (418)
Q Consensus       152 ~~CaICl~~f~~~~~---~r~lp~C~H~FH~~CI~~W------L~-----~~~tCP~CR~~  198 (418)
                      ..|+||...+.+++.   .+....|..-||..|+.-=      +.     ....||.|+..
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~   63 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER   63 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence            469999999988763   5555579999999997531      11     16789999864

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=81.08  E-value=0.63  Score=34.58  Aligned_cols=46  Identities=26%  Similarity=0.553  Sum_probs=32.5

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCcccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRAN  198 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~  198 (418)
                      ..+..|.||.+.   + .+..-..|...||..|+..-|..    .-.||.|...
T Consensus         7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   56 (61)
T 1mm2_A            7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence            356679999753   2 34444569999999999875543    3469999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-22
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-15
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-13
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-12
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-12
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-12
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-10
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-09
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-07
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-06
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	5e-05
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 86.5 bits (214), Expect = 4e-22
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
           +ECAVCL+E ED E  R LP+C H FH  C+D+WL SH TCP+CR  + 
Sbjct: 6   VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 68.4 bits (167), Expect = 2e-15
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
           A  C +CL +  +         C H F   CI  W+  + TCP+C+  + 
Sbjct: 5   AERCPICLEDPSNYSMA---LPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 1e-13
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL-ASHVTCPVCRANLTPE 202
           +EC +C+   E D+       C +     C        +  CP CR     +
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 1e-12
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 152 LECAVCLSEFEDDETLRLLP-KCDHVFHPHCIDVWLA-SHVTCPVCRANLTPESNEKVKL 209
             C  C +    + +L+L+   C H     C+D+        CP C   L  +SN +V+L
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR-KSNFRVQL 62

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 14/59 (23%)

Query: 153 ECAVCLSEFEDDETLRLLP--------------KCDHVFHPHCIDVWLASHVTCPVCRA 197
            CA+C +   D                       C+H FH HCI  WL +   CP+   
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 146 KIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLT 200
           ++G     C +C    +D   +++ P C H+    C+  W  S    CP CR  + 
Sbjct: 18  EMGSTFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIK 69

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 4e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESN 204
           L C  C +E +     +LLP C H     C++      + CP+C+A     ++
Sbjct: 7   LRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 152 LECAVCLSEFEDDETLRLLPK-CDHVFHPHCIDVWLASH--VTCPVCRA 197
             C +C  E  ++              H  C+  WL       C +C  
Sbjct: 7   PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH---VTCPVCRANLTPES 203
           LEC +CL   ++  +     KCDH+F   C+   L        CP+C+ ++T  S
Sbjct: 22  LECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH--------VTCP--VCRAN 198
            G+  C +CL E+  ++   +   C  +F   C+  ++           ++CP   C   
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61

Query: 199 LTPESNEKVKLCDSN 213
              + NE   +  + 
Sbjct: 62  GHLQENEIECMVAAE 76

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRA 197
              +  S+      +  L KC H FH  C+     +      + CP C+ 
Sbjct: 41  YSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV-TCPVCRANLTP 201
           ++ C +C     D     +   C H+F   CI   L      CP CR    P
Sbjct: 23  SISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
            L C+ C +   +   L     C+H+F  +C+   +     CPVC      + 
Sbjct: 22  LLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQD 69

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 4e-06
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
           + CA+              PK   +F    ++ ++      P+    L+ E 
Sbjct: 1   MLCAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCRANLTPES 203
           +C  C   +  DE       C+  FH  C+ +  A         CP C     P S
Sbjct: 8   QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSS 63

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)

Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT----CPVCRANLTPESNE 205
           C VC    +    L +  +C+  FH  C    L         C +C      +  +
Sbjct: 10  CRVC----QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEED 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.6
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.39
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.35
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.3
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.26
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.2
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.09
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.02
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.91
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.9
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.79
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.76
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.65
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.63
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.48
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.3
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	91.11
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	86.48
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	84.46
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	84.23
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	81.74

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.60  E-value=1.9e-16  Score=116.74  Aligned_cols=51  Identities=55%  Similarity=1.258  Sum_probs=47.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ++.+|+||+++|.+++.+..+|.|+|.||..||..|+..+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            566899999999999998888779999999999999999999999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8e-14  Score=111.69  Aligned_cols=65  Identities=28%  Similarity=0.507  Sum_probs=50.9

Q ss_pred             CceeeecccccccCCCCcccccccccccCCC---------------ceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794          135 PIFVYSAVKDLKIGKGALECAVCLSEFEDDE---------------TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL  199 (418)
Q Consensus       135 P~~~y~~~~~~~~~~~~~~CaICl~~f~~~~---------------~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l  199 (418)
                      .+..++.+.........++|+||++++.+..               .+..++ |+|+||..||..||+.+.+||+||++.
T Consensus         5 ~ik~~~av~~w~~d~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~   83 (88)
T d3dplr1           5 EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW   83 (88)
T ss_dssp             EEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             EEeeEEEEEEEeecCCCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcc
Confidence            3445566655555567778999999886532               245666 999999999999999999999999987


Q ss_pred             C
Q 014794          200 T  200 (418)
Q Consensus       200 ~  200 (418)
                      .
T Consensus        84 ~   84 (88)
T d3dplr1          84 E   84 (88)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.35  E-value=2e-13  Score=104.19  Aligned_cols=48  Identities=33%  Similarity=0.802  Sum_probs=42.2

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT  200 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~  200 (418)
                      ..++|+||++.|.+  .++.+| |+|.||..||..|+..+.+||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            56789999999865  356677 9999999999999999999999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.3e-13  Score=97.89  Aligned_cols=49  Identities=22%  Similarity=0.503  Sum_probs=40.9

Q ss_pred             cccccccccccCCCce-EecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          152 LECAVCLSEFEDDETL-RLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       152 ~~CaICl~~f~~~~~~-r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      .+|+||+++|..++.. ..++ |+|.||..||+.|+.. +.+||+||+++.+
T Consensus         1 leCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            3799999999876654 4455 9999999999999986 4579999998864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2e-12  Score=107.60  Aligned_cols=53  Identities=23%  Similarity=0.614  Sum_probs=41.5

Q ss_pred             CCcccccccccccCC---------------CceEecCCCCccccchhHHHHHhc-----CCCCCCcccccCCCC
Q 014794          150 GALECAVCLSEFEDD---------------ETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRANLTPES  203 (418)
Q Consensus       150 ~~~~CaICl~~f~~~---------------~~~r~lp~C~H~FH~~CI~~WL~~-----~~tCP~CR~~l~~~~  203 (418)
                      .+.+|+||++++...               ..+.+++ |+|+||..||..||..     +.+||+||+.+..+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCc
Confidence            456899999998542               2355666 9999999999999985     347999999876543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.8e-12  Score=98.39  Aligned_cols=49  Identities=27%  Similarity=0.769  Sum_probs=41.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE  202 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~  202 (418)
                      ....|+||++.+.+   .+++| |||.||..||..||.. +.+||+||..|...
T Consensus        22 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          22 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             CTTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            44579999998875   67788 9999999999999985 56899999999743

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.6e-12  Score=95.26  Aligned_cols=51  Identities=22%  Similarity=0.526  Sum_probs=40.5

Q ss_pred             CCcccccccccccCC-C-ceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDD-E-TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~-~-~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ++..|+||++.+..+ + .+.+++ |+|.||..||..|+.. +.+||+||+.+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            467899999986443 2 345555 9999999999999976 5679999998854

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.5e-11  Score=90.22  Aligned_cols=48  Identities=19%  Similarity=0.283  Sum_probs=41.7

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES  203 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~  203 (418)
                      .|+||++.+++   ..++++|||+||.+||.+||+.+.+||+||+++...+
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~d   49 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   49 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHh
Confidence            69999999876   4556669999999999999999999999999887543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.5e-11  Score=88.44  Aligned_cols=48  Identities=29%  Similarity=0.699  Sum_probs=40.0

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCCc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESN  204 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~~  204 (418)
                      ...+|+||++.|.+   .+++| |+|.||..||+.|   +.+||+||+++...++
T Consensus         5 ~~l~C~IC~~~~~~---p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCCcccCcccCC---CEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            45689999999976   45677 9999999999876   6789999999976543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3e-10  Score=92.77  Aligned_cols=48  Identities=31%  Similarity=0.786  Sum_probs=39.7

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC---CCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH---VTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~---~tCP~CR~~l~~  201 (418)
                      ...+|+||++.|.+   ...++ |||.||..||..|+..+   ..||+||.++..
T Consensus        20 ~~l~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             cCcCCCccCchhCC---eEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            34679999999976   34566 99999999999999864   379999998753

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.9e-10  Score=90.50  Aligned_cols=47  Identities=30%  Similarity=0.619  Sum_probs=40.2

Q ss_pred             CcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ...|+||++.+.+   .++++ |||.||..||..|++. +.+||+||.++.+
T Consensus        23 ~l~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcCCccCCcchhc---ceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            4579999999876   56777 9999999999999975 4589999998754

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.79  E-value=1.3e-09  Score=80.48  Aligned_cols=52  Identities=17%  Similarity=0.438  Sum_probs=38.1

Q ss_pred             CCCcccccccccccCCCceE-ecCCCCccccchhHHHHHhc--CCCCCCcccccC
Q 014794          149 KGALECAVCLSEFEDDETLR-LLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLT  200 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r-~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~  200 (418)
                      ++...|.||++++....... ....|+|.||..||..|+..  +.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            46678999999876543211 11124699999999999964  568999999764

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.2e-09  Score=88.06  Aligned_cols=47  Identities=26%  Similarity=0.651  Sum_probs=37.8

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      ....|+||++.|.+.  +.+.+ |||.||..||..|+.  ..||+||.++..
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hcCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCch
Confidence            456899999999764  33345 999999999999984  459999987753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=6.8e-09  Score=80.72  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ++..|+||++-|.+   .++++ |||.|+..||..|+.. +.+||+|+.++..
T Consensus         6 ~~l~CpIc~~l~~d---Pv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           6 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             ccccCcCcCchhhh---hcccC-CcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            67789999999988   45677 9999999999999986 5579999998753

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.63  E-value=1e-08  Score=79.26  Aligned_cols=48  Identities=23%  Similarity=0.552  Sum_probs=41.5

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~  201 (418)
                      ++..|+||++.|.+   .++++ |||.|+..||..|+.. +.+||.|+.++..
T Consensus         7 ~~l~CpIc~~~m~d---PV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhC---ceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            57899999999988   45677 9999999999999986 4579999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.8e-08  Score=79.58  Aligned_cols=49  Identities=22%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP  201 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~  201 (418)
                      +.+.|+||++.|.+   .++++.|+|.|+..||..||..+.+||+|+.++..
T Consensus        21 ~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            56899999999998   66787455689999999999999999999998754

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=9.7e-08  Score=75.85  Aligned_cols=48  Identities=21%  Similarity=0.683  Sum_probs=38.7

Q ss_pred             CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--------CCCCCCccc
Q 014794          149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPVCRA  197 (418)
Q Consensus       149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~CR~  197 (418)
                      .+..+|+||++++...+.+.+++ |+|.||.+||..|+..        ..+||.|..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            35678999999998777777665 9999999999999963        125998754

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.11  E-value=0.035  Score=39.87  Aligned_cols=49  Identities=24%  Similarity=0.597  Sum_probs=36.4

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHh-----cCCCCCCcccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-----SHVTCPVCRAN  198 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-----~~~tCP~CR~~  198 (418)
                      ....|.||.....+++..+.-..|+..||..|+..=..     .+..||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            45689999988777666556667999999999864211     25679999753

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.12  Score=35.11  Aligned_cols=44  Identities=34%  Similarity=0.772  Sum_probs=31.8

Q ss_pred             ccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCccc
Q 014794          153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRA  197 (418)
Q Consensus       153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~  197 (418)
                      .|.||...-.. +.+..-..|...||..|++.-+..    .-.||.|+.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            58899766443 345555679999999999987654    335999974

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.46  E-value=0.14  Score=36.21  Aligned_cols=45  Identities=27%  Similarity=0.561  Sum_probs=31.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCcccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRAN  198 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~  198 (418)
                      ....|.+|.+.   + .+..-..|.-.||..|+...+..    ...||.|+..
T Consensus         8 ~~~~C~~C~~~---g-~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CcCCCcCCCCC---C-eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            45579999752   3 34444569999999999876653    4469999754

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.27  Score=35.72  Aligned_cols=45  Identities=27%  Similarity=0.598  Sum_probs=30.9

Q ss_pred             CCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCcccc
Q 014794          150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRAN  198 (418)
Q Consensus       150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~  198 (418)
                      ....|.||..   .++ +..-..|...||..|+.+.+..    .-.||.|+..
T Consensus         6 ~c~~C~~C~~---~~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           6 SATICRVCQK---PGD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSSCCSSSCS---SSC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCC---cCE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            3445667753   333 4555579999999999988754    3369999643

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.74  E-value=0.13  Score=38.90  Aligned_cols=50  Identities=20%  Similarity=0.496  Sum_probs=34.1

Q ss_pred             CcccccccccccC-CCceEecCCCCccccchhHHHHHh-----c---CCCCCCcccccC
Q 014794          151 ALECAVCLSEFED-DETLRLLPKCDHVFHPHCIDVWLA-----S---HVTCPVCRANLT  200 (418)
Q Consensus       151 ~~~CaICl~~f~~-~~~~r~lp~C~H~FH~~CI~~WL~-----~---~~tCP~CR~~l~  200 (418)
                      ...|.||...... ...++.-..|...||..|+...+.     .   ...||.|.....
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            4579999875543 234555567999999999875432     1   457999975443