Citrus Sinensis ID: 014813
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 418 | ||||||
| 359485581 | 472 | PREDICTED: SPX and EXS domain-containing | 0.997 | 0.883 | 0.861 | 0.0 | |
| 449453179 | 477 | PREDICTED: SPX and EXS domain-containing | 1.0 | 0.876 | 0.839 | 0.0 | |
| 224132622 | 465 | predicted small molecule transporter [Po | 0.983 | 0.883 | 0.844 | 0.0 | |
| 357453507 | 469 | Xenotropic and polytropic retrovirus rec | 1.0 | 0.891 | 0.815 | 0.0 | |
| 388514961 | 469 | unknown [Medicago truncatula] | 1.0 | 0.891 | 0.813 | 0.0 | |
| 356543746 | 472 | PREDICTED: SPX and EXS domain-containing | 1.0 | 0.885 | 0.818 | 0.0 | |
| 356550002 | 471 | PREDICTED: SPX and EXS domain-containing | 1.0 | 0.887 | 0.813 | 0.0 | |
| 388518701 | 469 | unknown [Lotus japonicus] | 0.988 | 0.880 | 0.815 | 0.0 | |
| 356530102 | 420 | PREDICTED: SPX and EXS domain-containing | 0.978 | 0.973 | 0.800 | 0.0 | |
| 356568338 | 420 | PREDICTED: SPX and EXS domain-containing | 0.978 | 0.973 | 0.798 | 0.0 |
| >gi|359485581|ref|XP_002274355.2| PREDICTED: SPX and EXS domain-containing protein 1-like [Vitis vinifera] gi|297739314|emb|CBI28965.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/418 (86%), Positives = 383/418 (91%), Gaps = 1/418 (0%)
Query: 1 MSTVDIMPSPVLLWRFKVLLFFIWGFICCKVGWDSVMRMSADLRDLFLYEAFLYYNPLLL 60
+ST IMPSP+ LWRFKVLLFFIWGF CCK+GWDSVMRMS DLRDLFLYEAFLYYNPLLL
Sbjct: 56 LSTAAIMPSPIFLWRFKVLLFFIWGFSCCKIGWDSVMRMSVDLRDLFLYEAFLYYNPLLL 115
Query: 61 VTMMVWLWGVNLWVFAQSNVNYVKIFDLDQDHLTHREVWKCATWMTIIVPTSMTAYLYLY 120
VTMMVWLWGVNLW+FAQS+VNY KIFDLDQ HLT RE+WKCATWMTIIVPTSMTAYLYLY
Sbjct: 116 VTMMVWLWGVNLWIFAQSSVNYAKIFDLDQSHLTQREIWKCATWMTIIVPTSMTAYLYLY 175
Query: 121 SHGEVSLAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIVLPLQAISFSDFFLA 180
SHGEVSLAASQPVLLY A+A++LIFPFDIFYLSSRY+LL+TLWRIVLPLQAI+FSDFFLA
Sbjct: 176 SHGEVSLAASQPVLLYTAIALVLIFPFDIFYLSSRYFLLKTLWRIVLPLQAITFSDFFLA 235
Query: 181 DILTSMAKVFSDLERSVCRMVHRQVATIAWFEADSVCGSHSVAIPLVLVLPYLFRLFQCL 240
DILTSMAKVFSDLERSVCRM+HRQVATIAWFEADSVCGSHSVAIPLVLVLPYLFR FQCL
Sbjct: 236 DILTSMAKVFSDLERSVCRMLHRQVATIAWFEADSVCGSHSVAIPLVLVLPYLFRFFQCL 295
Query: 241 RQYKDTREKTALFNALKYSTAVPVIFLSALKYHVLPGSWTNFYRPLWLLSSVLNSLYSFY 300
RQYKDT EKT L NALKYSTAVPVIFLSALKYHV P WT+ YRPLWLLSSVLNSLYSFY
Sbjct: 296 RQYKDTGEKTTLLNALKYSTAVPVIFLSALKYHVFPDRWTSIYRPLWLLSSVLNSLYSFY 355
Query: 301 WDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAHLRHN 360
WD+TRDWDLS FTRIFKF++ L S L +GRRWVY WVIGSNL+LRCTWTYKLSAHLRHN
Sbjct: 356 WDVTRDWDLSAFTRIFKFSKASLLSNLLYGRRWVYFWVIGSNLVLRCTWTYKLSAHLRHN 415
Query: 361 YLTVFAITVLEMLRRFQWAFFRVENEWNKMNSKSNIQLSEKDNTNEEAQSLISNDHNV 418
YLTVF IT LE+ RRFQW FFRVENEWNKMNSKSNIQLS D T+EE + L SN+ NV
Sbjct: 416 YLTVFTITALEIFRRFQWVFFRVENEWNKMNSKSNIQLSMSD-TSEEDKLLGSNERNV 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453179|ref|XP_004144336.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Cucumis sativus] gi|449480887|ref|XP_004156022.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224132622|ref|XP_002327841.1| predicted small molecule transporter [Populus trichocarpa] gi|222837250|gb|EEE75629.1| predicted small molecule transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357453507|ref|XP_003597031.1| Xenotropic and polytropic retrovirus receptor [Medicago truncatula] gi|355486079|gb|AES67282.1| Xenotropic and polytropic retrovirus receptor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388514961|gb|AFK45542.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356543746|ref|XP_003540321.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356550002|ref|XP_003543379.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|388518701|gb|AFK47412.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|356530102|ref|XP_003533623.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356568338|ref|XP_003552368.1| PREDICTED: SPX and EXS domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 418 | ||||||
| TAIR|locus:2177251 | 457 | AT5G35730 "AT5G35730" [Arabido | 0.930 | 0.851 | 0.792 | 5.7e-178 | |
| DICTYBASE|DDB_G0271664 | 923 | DDB_G0271664 "SPX/EXS domain-c | 0.746 | 0.338 | 0.348 | 1.8e-44 | |
| FB|FBgn0035649 | 671 | CG10483 [Drosophila melanogast | 0.777 | 0.484 | 0.320 | 2.5e-38 | |
| DICTYBASE|DDB_G0285957 | 919 | xpr1 "SPX/EXS domain-containin | 0.787 | 0.357 | 0.313 | 4.2e-38 | |
| FB|FBgn0030890 | 674 | CG7536 [Drosophila melanogaste | 0.806 | 0.5 | 0.320 | 1.2e-35 | |
| ZFIN|ZDB-GENE-060503-362 | 692 | xpr1 "xenotropic and polytropi | 0.777 | 0.469 | 0.320 | 6.8e-32 | |
| ZFIN|ZDB-GENE-060503-266 | 693 | si:dkey-60b12.7 "si:dkey-60b12 | 0.779 | 0.470 | 0.309 | 1.1e-31 | |
| DICTYBASE|DDB_G0290647 | 927 | DDB_G0290647 "SPX/EXS domain-c | 0.818 | 0.368 | 0.270 | 6.4e-31 | |
| WB|WBGene00012659 | 710 | Y39A1A.22 [Caenorhabditis eleg | 0.466 | 0.274 | 0.326 | 1e-30 | |
| UNIPROTKB|E1C6K2 | 665 | XPR1 "Uncharacterized protein" | 0.765 | 0.481 | 0.294 | 1.5e-30 |
| TAIR|locus:2177251 AT5G35730 "AT5G35730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
Identities = 309/390 (79%), Positives = 344/390 (88%)
Query: 6 IMPSPVLLWRFKVLLFFIWGFICCKVGWDSVMRMSADLRDLFLYEAFLYYNPLLLVTMMV 65
++PSP+ LWRFKV+LF W CCK+GWDSVMRMS DLRDLFLYEAFLYYNPLLLVTMMV
Sbjct: 48 MVPSPIFLWRFKVVLFLFWALCCCKIGWDSVMRMSIDLRDLFLYEAFLYYNPLLLVTMMV 107
Query: 66 WLWGVNLWVFAQSNVNYVKIFDLDQDHLTHREVWKCATWMTIIVPTSMTAYLYLYSHGEV 125
WLWGVNLWVF+Q +VNY K+FDLD +HLTHRE+WKC+ WMTIIVPTSMTAYLYLYSHGEV
Sbjct: 108 WLWGVNLWVFSQGSVNYSKVFDLDHNHLTHREMWKCSMWMTIIVPTSMTAYLYLYSHGEV 167
Query: 126 SLAASQPVLLYIAVAMILIFPFDIFXXXXXXXXXXTLWRIVLPLQAISFSDFFLADILTS 185
SLAASQPVLLYIA A++LIFPFDIF TLWRI PLQ I+F DFFLADILTS
Sbjct: 168 SLAASQPVLLYIAFALVLIFPFDIFYLSSRYFLLRTLWRIAFPLQPITFPDFFLADILTS 227
Query: 186 MAKVFSDLERSVCRMVHRQVATIAWFEADSVCGSHSVAIPLVLVLPYLFRLFQCLRQYKD 245
M KVFSDLERSVCRMVHRQVATIAWFEAD+VCGSH +AIPLVLV PY+ RL QCLRQYKD
Sbjct: 228 MVKVFSDLERSVCRMVHRQVATIAWFEADAVCGSHQIAIPLVLVFPYICRLLQCLRQYKD 287
Query: 246 TREKTALFNALKYSTAVPVIFLSALKYHVLPGSWTNFYRPLWLLSSVLNSLYSFYWDITR 305
T+EK++L NALKYSTAVPVIFLSALKYHV+P SWT+FYRPLWL SSV+NSLYSFYWD+TR
Sbjct: 288 TKEKSSLLNALKYSTAVPVIFLSALKYHVMPESWTSFYRPLWLFSSVINSLYSFYWDVTR 347
Query: 306 DWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAHLRHNYLTVF 365
DWDLS FT+IFKF+RP S L +GR+WVY WVIGSNL+LRC WTYKLSAHLRHNY+TVF
Sbjct: 348 DWDLSGFTKIFKFSRPSTISNLLYGRQWVYFWVIGSNLVLRCAWTYKLSAHLRHNYITVF 407
Query: 366 AITVLEMLRRFQWAFFRVENEWNKMNSKSN 395
+T +EMLRRFQW FFRVENEWNK+ +KS+
Sbjct: 408 TMTAMEMLRRFQWVFFRVENEWNKI-TKSH 436
|
|
| DICTYBASE|DDB_G0271664 DDB_G0271664 "SPX/EXS domain-containing protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0035649 CG10483 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0285957 xpr1 "SPX/EXS domain-containing protein 3" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0030890 CG7536 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060503-362 xpr1 "xenotropic and polytropic retrovirus receptor 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060503-266 si:dkey-60b12.7 "si:dkey-60b12.7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0290647 DDB_G0290647 "SPX/EXS domain-containing protein 5" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| WB|WBGene00012659 Y39A1A.22 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C6K2 XPR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 418 | |||
| pfam03124 | 337 | pfam03124, EXS, EXS family | 2e-92 | |
| COG5409 | 384 | COG5409, COG5409, EXS domain-containing protein [S | 7e-36 |
| >gnl|CDD|217378 pfam03124, EXS, EXS family | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 2e-92
Identities = 147/346 (42%), Positives = 206/346 (59%), Gaps = 21/346 (6%)
Query: 51 AFLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIV 109
F Y L+ + +WLWG+NL+V+ +S +NYV IF+ D L+HRE+ + A++ T++
Sbjct: 2 LFPLYRGFFLLILGLWLWGLNLYVWKRSGINYVFIFEFDPRTSLSHRELLELASFFTVLW 61
Query: 110 PTSMTAYLYLYSHGEVSLAASQ--PVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIVL 167
S YL L A+ P++L + V +IL PF+IFY S R++LLRTL+RI+L
Sbjct: 62 LLSFLLYLLLEHLELTKPASWVQVPLVLLLIVLLILFLPFNIFYRSGRFWLLRTLFRILL 121
Query: 168 -PLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFEADSVCGSHSVAI-P 225
P + F DFFLAD LTS+ KV +DLE +VC + +D+ CGS V + P
Sbjct: 122 APFYPVKFRDFFLADQLTSLVKVLADLEYTVCYYFNN------GDSSDNTCGSSKVYVLP 175
Query: 226 LVLVLPYLFRLFQCLRQYKDTREKTA-LFNALKYSTAVPVIFLSALKYHVLPGSWTNFYR 284
+V LPY R QCLR+Y+DT + L NALKYSTA+PV+ LS L YR
Sbjct: 176 IVACLPYWIRFLQCLRRYRDTGDAFPHLANALKYSTAIPVVVLSTLYRKYNTSDA---YR 232
Query: 285 PLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLI 344
LW++ S++NS+YSFYWD+ DW L F + NR L L + R+WVY + I +LI
Sbjct: 233 ILWIVFSIINSIYSFYWDVKMDWGL--FQKNSSKNRF-LRDKLLYPRKWVYYFAIVLDLI 289
Query: 345 LRCTWTYKLS---AHLRHNYLTVFAITVLEMLRRFQWAFFRVENEW 387
LR W +S ++H+ L VF + +LE++RRF W FFRVENE
Sbjct: 290 LRFAWLLTVSPLQHSIQHSELGVFLLALLEIIRRFIWNFFRVENEH 335
|
We have named this region the EXS family after (ERD1, XPR1, and SYG1). This family includes C-terminus portions from the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be murine leukaemia virus (MLV) receptors (XPR1). N-terminus portions from these proteins are aligned in the SPX pfam03105 family. The previously noted similarity between SYG1 and MLV receptors over their whole sequences is thus borne out in pfam03105 and this family. While the N-termini aligned in pfam03105 are thought to be involved in signal transduction, the role of the C-terminus sequences aligned in this family is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) yeast proteins. ERD1 proteins are involved in the localisation of endogenous endoplasmic reticulum (ER) proteins. erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localisation label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles. Length = 337 |
| >gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 418 | |||
| PF03124 | 345 | EXS: EXS family; InterPro: IPR004342 The EXS domai | 100.0 | |
| KOG1162 | 617 | consensus Predicted small molecule transporter [In | 100.0 | |
| COG5409 | 384 | EXS domain-containing protein [Signal transduction | 100.0 |
| >PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-84 Score=654.58 Aligned_cols=331 Identities=41% Similarity=0.750 Sum_probs=290.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEeeCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---
Q 014813 52 FLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIVPTSMTAYLYLYSHGEVSL--- 127 (418)
Q Consensus 52 ~l~y~~~~L~~l~~~l~g~nl~iw~~~~INy~~IFe~~~-~~l~~~~~~~~a~~lt~i~~~sl~~~l~~~~~g~~~~--- 127 (418)
+++||+.+++++++|+||+|+++|+++||||++|||+|+ ++++++|+++.++.+++++++++..++.....+....
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 468999999999999999999999999999999999995 7889999999999999888888777765544332211
Q ss_pred --chhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHhHhhc-CcceeecchhhhhHhhhhHHHHHhhhhhheeeeeccc
Q 014813 128 --AASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIVL-PLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQ 204 (418)
Q Consensus 128 --~~~~Pl~l~~~~~~~ll~P~~i~~~~sR~~~lr~l~ril~-pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~ 204 (418)
.+..|+++++++++++++|.+++++++|+|++++++|++. |+++|+|+|||+||||||++|+++|+++++|+|.++.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 2357999999999999999999999999999999999985 8999999999999999999999999999999998743
Q ss_pred ccccccccCCCccCCccch-hhhHhhhhHHHHHHHHHHHhhhcCCc-chhhhHHHHHhhHHHHHHHHHhhhccCCCCccc
Q 014813 205 VATIAWFEADSVCGSHSVA-IPLVLVLPYLFRLFQCLRQYKDTREK-TALFNALKYSTAVPVIFLSALKYHVLPGSWTNF 282 (418)
Q Consensus 205 ~~~~~w~~~~~~c~~~~~~-~p~~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~sai~vi~~s~l~~~~~~~~~~~~ 282 (418)
. .++++.|++++.. .|+++++|++||++||+|||+||+++ +||.||+||++|+++++++++.....++.+...
T Consensus 162 ~-----~~~~~~c~~~~~~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~ 236 (345)
T PF03124_consen 162 F-----TSPSNQCGSSSWYIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIW 236 (345)
T ss_pred c-----cCCCCcCccccHhHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 2 2567789887665 49999999999999999999999999 999999999999999999987655443333334
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhHHHhhhhHHHHHhhhhcccc----cc
Q 014813 283 YRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAH----LR 358 (418)
Q Consensus 283 ~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~k~~YY~aiv~n~iLRf~W~~~l~~~----~~ 358 (418)
.+.+|++++++||+||++||++|||||++.+ .+.+++.||++++|++|++||.||+.|+++|++|++++++. ..
T Consensus 237 ~~~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~--~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~ 314 (345)
T PF03124_consen 237 LFILWIIFALINSLYSFYWDVKMDWGLFQPK--KKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHID 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCc--cccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 6799999999999999999999999998754 22467889999999999999999999999999999998763 33
Q ss_pred hhhHHHHHHHHHHHHhhhceeeeeeeccchh
Q 014813 359 HNYLTVFAITVLEMLRRFQWAFFRVENEWNK 389 (418)
Q Consensus 359 ~~~~~~f~l~~lEI~RR~iWnffRvEnEh~k 389 (418)
+++...++++++||+||++||||||||||+|
T Consensus 315 ~~~~~~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 315 NSEIFIFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 5678889999999999999999999999986
|
The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane |
| >KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5409 EXS domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 418 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 73/456 (16%), Positives = 131/456 (28%), Gaps = 144/456 (31%)
Query: 5 DIMPSPVLLWRFKVLLFFIWGFICCKVGWDSVMRMSADLRDL---FLYEAFLYYN--PLL 59
I+ S + L W + V + ++ + FL P +
Sbjct: 53 HIIMSKDAVSG---TLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 60 LVTMMVW----LWGVNLWVFAQSNVNYVKIFDLDQDHLTHREVWKCATWMTIIVPTSMTA 115
+ M + L+ N VFA+ NV+ ++ K + + P
Sbjct: 108 MTRMYIEQRDRLYNDNQ-VFAKYNVSRLQ------------PYLKLRQALLELRPAK--- 151
Query: 116 YLYLYS---HGEVSLAASQPVLLYIAVAMILIFPFDIFYLSSRYY-----LLRTLWRIVL 167
+ + G+ +A V L V F IF+L+ + +L L ++
Sbjct: 152 NVLIDGVLGSGKTWVALD--VCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEMLQKL-- 205
Query: 168 PLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFEADSVCGSHSVAIPLV 227
L I + +D +++ ++ + R++ + +
Sbjct: 206 -LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----------------L 247
Query: 228 LVL-----PYLFRLF--QCLRQYKDTREKTALFNALKYSTAVPVIFLSALKYHVLPGSWT 280
LVL + F C + TR K + + L +T + H
Sbjct: 248 LVLLNVQNAKAWNAFNLSC-KILLTTRFK-QVTDFLSAATTTHISLD-----HHSMT--- 297
Query: 281 NFYRP--LWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWV 338
LL L+ R DL + N P S +
Sbjct: 298 -LTPDEVKSLLLKYLD---------CRPQDLP--REVLTTN-PRRLS------------I 332
Query: 339 IGSNLI-LRCTWTY-------KLS------------AHLRHNY--LTVF----AIT--VL 370
I ++ TW KL+ A R + L+VF I +L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 371 EMLRRFQWA---FFRVENEWNKMNSKSNIQLSEKDN 403
++ W V NK++ S L EK
Sbjct: 393 SLI----WFDVIKSDVMVVVNKLHKYS---LVEKQP 421
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00