Citrus Sinensis ID: 014821
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 418 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LMA1 | 530 | Probable flavin-containin | yes | no | 0.952 | 0.750 | 0.425 | 2e-87 | |
| Q9FKE7 | 459 | Putative flavin-containin | no | no | 0.844 | 0.769 | 0.396 | 4e-70 | |
| Q04799 | 533 | Dimethylaniline monooxyge | no | no | 0.765 | 0.600 | 0.274 | 2e-28 | |
| Q8K4C0 | 533 | Dimethylaniline monooxyge | no | no | 0.760 | 0.596 | 0.270 | 4e-28 | |
| P49109 | 533 | Dimethylaniline monooxyge | no | no | 0.772 | 0.606 | 0.272 | 1e-27 | |
| P97872 | 533 | Dimethylaniline monooxyge | no | no | 0.758 | 0.594 | 0.280 | 2e-27 | |
| P97501 | 534 | Dimethylaniline monooxyge | no | no | 0.751 | 0.588 | 0.286 | 6e-27 | |
| Q9EQ76 | 531 | Dimethylaniline monooxyge | no | no | 0.727 | 0.572 | 0.288 | 5e-26 | |
| P17635 | 535 | Dimethylaniline monooxyge | no | no | 0.748 | 0.585 | 0.263 | 8e-26 | |
| P49326 | 533 | Dimethylaniline monooxyge | no | no | 0.770 | 0.604 | 0.274 | 8e-26 |
| >sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/409 (42%), Positives = 253/409 (61%), Gaps = 11/409 (2%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQ 59
+ ++AI+GAGVSGL A K L+ +P VFEA +GG W T ETT LQ+ + Y+
Sbjct: 8 LTSSRVAIIGAGVSGLAAAKNLVHH--NPTVFEASDSVGGVWRSCTYETTKLQSARVDYE 65
Query: 60 FSDYPWPDSVT-TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSW 118
FSD+PWP++ T FP + ++LDY++SYA HFDL K +KF KV+ + F G GE +
Sbjct: 66 FSDFPWPNNRDDTTFPPYLEILDYLESYAKHFDLLKFMKFGSKVIEVRFIG-DGETPQMV 124
Query: 119 SFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEA 178
G + W VAV+ + + H +FV++C G++ DVP IP FP KKGPE
Sbjct: 125 DL-GAYGNLLPGKPVWEVAVQIGDSGDIQWHAFEFVVVCTGKYGDVPRIPAFPAKKGPEM 183
Query: 179 FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN--PCTVLY 236
F GKV+HSMDY ++ E A+ L+ GK+V V+G +KSA+D+A+E AN E CT++
Sbjct: 184 FQGKVMHSMDYCKLEKEEASTLLSGKKVAVIGFKKSAIDLALESALANQGEGGKACTMVV 243
Query: 237 RTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296
RT HW IP Y+ WG P Y +R ++ L +P + FL +L + S LR +SKF+E+
Sbjct: 244 RTTHWGIPHYWVWGLPFFLFYSSRASQFLHDRPNQSFLRTLFCLLFSLLRAVVSKFIESY 303
Query: 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVV 356
+ K L K+G+ P HSF ++ +SC +PE F+++ ++G I KKS + F E+GIV
Sbjct: 304 VLWKLPLEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVF 363
Query: 357 DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYR 405
+ TT L+ D+VILATG+ G KLK I + + F+ +L P+ +PLYR
Sbjct: 364 EDGTT-LEADVVILATGYDGKKKLKAI-VPEPFRTWLE-FPSGVMPLYR 409
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Required for the establishment of systemic acquired resistance (SAR). Not involved in local defense mechanisms. Confers a salicylic acid-dependent (SA) resistance to virulent pathogens such as P.syringae pv tomato and H.parasitica. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: - |
| >sp|Q9FKE7|FMO2_ARATH Putative flavin-containing monooxygenase 2 OS=Arabidopsis thaliana GN=FMO2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 232/406 (57%), Gaps = 53/406 (13%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDY 63
++AI+GAGVSGL A K+L HP VFEA IGG W K T ETT LQ+ + Y+ SD+
Sbjct: 12 RVAIIGAGVSGLAAAKHLARH--HPQVFEASDSIGGVWRKCTYETTKLQSVRVSYELSDF 69
Query: 64 PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN- 122
WP+ + FP + VLDY+++YA HF+L K IKFN KVV + F G D K+ +
Sbjct: 70 LWPNRGESSFPTYVDVLDYLEAYAKHFNLVKFIKFNSKVVELRFIG----DGKTLQMGDL 125
Query: 123 -GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG 181
G + W VAV + + + H ++V++C G++ DVP P FP KKGPE F G
Sbjct: 126 GAYGNLLPGKPVWEVAV-NTGDGDIQWHAFEYVVVCAGKYGDVPRTPTFPVKKGPEIFKG 184
Query: 182 KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN-GLENP-CTVLYRTE 239
KV+HSMDYS + E A+ L+ GK+V V+G +KSA+D+A+E AN G E CT++ RT
Sbjct: 185 KVLHSMDYSKLQKEKASQLLHGKKVAVIGFKKSAIDLALESALANQGKEGKTCTMVVRTP 244
Query: 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKK 299
HW IP Y+ R +SKF+E+ +
Sbjct: 245 HWVIPHYW--------------------------------------RATVSKFIESYVLW 266
Query: 300 KHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQ 359
K L K+G+ P H+F ++ +SC VPEKF+++ ++G I K++ ++ F ++GI +
Sbjct: 267 KLPLEKYGLKPDHAFEEDYASCQMALVPEKFFEEADKGMIRFKRTTNWWFYDEGIEFEDG 326
Query: 360 TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYR 405
TT L+ D+VILATG+ G KLK I + + F+ +L P +PLYR
Sbjct: 327 TT-LEADVVILATGYDGMKKLKAI-VPEPFRSWLE-FPWGIMPLYR 369
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q04799|FMO5_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Oryctolagus cuniculus GN=FMO5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 168/386 (43%), Gaps = 66/386 (17%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M K++A++GAG SGL K L +G P+ FE DIGG W ++ +
Sbjct: 1 MAGKRVAVIGAGASGLACIKCCLEEGLEPVCFERTDDIGGLWRFQESPDEGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F ++QVL+Y + YA F L K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHF-PNFMHNSQVLEYFRMYAKEFGLLKYIQFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP-- 168
F + G+W V E + V D V++C G + ++P
Sbjct: 116 -------------KRPDFSTSGQWEVLTECEGKKESAV--FDGVLVCTGHHTSA-HLPLE 159
Query: 169 EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228
FP G E F G+ +HS DY + + GKRV V+G+ S D+A+E +
Sbjct: 160 SFP---GIEKFKGQYLHSRDYKNPEK------FTGKRVIVIGIGNSGGDLAVEISHT--- 207
Query: 229 ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWA 288
+ R W + G+P+ L +RF++ L GE S
Sbjct: 208 AKQVFLSTRRGAWIMNRVGDHGYPIDILLSSRFSQFLKKITGETIANS------------ 255
Query: 289 ISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFS 348
F+E + ++ A FG+ PKH L + TV + +++ GS+ +K +
Sbjct: 256 ---FLERKMNQRFDHAMFGLKPKHRALSQHP-----TVNDDLPNRIISGSVKIKGNVK-E 306
Query: 349 FCEDGIVVDGQTTPLKTDLVILATGF 374
F E + + + D VI ATG+
Sbjct: 307 FTETAAIFEDGSREDDIDAVIFATGY 332
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In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|Q8K4C0|FMO5_RAT Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Rattus norvegicus GN=Fmo5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 174/388 (44%), Gaps = 70/388 (18%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M KK+IA++G+G SGL K L +G P+ FE DIGG W ++ +
Sbjct: 1 MAKKRIAVIGSGASGLTCIKCCLEEGLEPVCFERSDDIGGLWRYQENPEKGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F ++QVL+Y + YA F L K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHY-PNFMHNSQVLEYFRMYAKEFGLLKYIQFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP- 168
QP F + G+W V E +V D V++C G +D P++P
Sbjct: 116 --------------KQPDFSTSGQWQVVTEHEGKQQVDV--FDGVLVCTGHHTD-PHLPL 158
Query: 169 -EFPPKKGPEAFHGKVIHSMDYSD-MDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226
FP G E F GK HS +Y + +++ GKRV V+G+ S D+A+E +
Sbjct: 159 DSFP---GIEKFKGKYFHSREYKNPVEF-------TGKRVIVIGIGNSGGDLAVEISHT- 207
Query: 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLR 286
+ R W + G+P+ L +R +L + + L
Sbjct: 208 --AKQVFLSTRRGAWILNRVGKRGYPIDILLSSRITN---------YLSKICGSALK--- 253
Query: 287 WAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQD 346
++++E + ++ FG+ PKHS L + T+ + +++ G + +K +
Sbjct: 254 ---NRYMEKQLNQRFDHEMFGLKPKHSALGQHP-----TINDDLPNRIISGLVKVKGNVK 305
Query: 347 FSFCEDGIVVDGQTTPLKTDLVILATGF 374
F E + + + D+VI ATG+
Sbjct: 306 -EFTETAAIFEDGSREDDIDVVIFATGY 332
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In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P49109|FMO5_CAVPO Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Cavia porcellus GN=FMO5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 170/389 (43%), Gaps = 66/389 (16%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M KK+IA++G GVSGL + K L +G P+ FE +DIGG W ++ +
Sbjct: 1 MTKKRIAVIGGGVSGLSSIKCCLEEGLEPVCFERSADIGGLWRFQENPEEGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F ++ VL+Y + YA F L K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHY-PNFMHNSHVLEYFRMYAKEFGLLKYIQFKTTVCNVK---- 115
Query: 111 SGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP-- 168
F + G+W V E T+V D V++C G ++ ++P
Sbjct: 116 -------------KRPDFSTSGQWEVVTEH--EGKTKVDVFDAVMVCTGHHTNA-HLPLE 159
Query: 169 EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228
FP G E F G+ HS DY + + GKRV ++G+ S D+A+E +
Sbjct: 160 SFP---GIEKFKGQYFHSRDYKNPE------AFTGKRVVIIGIGNSGGDLAVEISHT--- 207
Query: 229 ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWA 288
+ R W + G+P L +RF FL +L LS
Sbjct: 208 AKQVFLSTRRGSWILNRVGKHGYPTDVLLSSRFTY---------FLSKILGQSLS----- 253
Query: 289 ISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFS 348
+ +VE + ++ FG+ PKH + + TV + +++ G + +K +
Sbjct: 254 -NAYVEKQMNERFDHEMFGLKPKHRAMSQHP-----TVNDDLPNRIIAGMVKVKGNVK-E 306
Query: 349 FCEDGIVVDGQTTPLKTDLVILATGFKGD 377
F E + + + D VI ATG+ D
Sbjct: 307 FTETAAIFEDGSREDDIDAVIFATGYSFD 335
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In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Cavia porcellus (taxid: 10141) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P97872|FMO5_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Mus musculus GN=Fmo5 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 176/389 (45%), Gaps = 72/389 (18%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M KK+IA++GAG SGL K L +G P+ FE DIGG W ++ +
Sbjct: 1 MAKKRIAVIGAGASGLTCIKCCLEEGLEPVCFERSGDIGGLWRFQEAPEEGRASIYQSVV 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD ++ ++QVL+Y + YA FDL K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHY-PNYMHNSQVLEYFRMYAKEFDLLKYIQFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP- 168
QP F + G+W V E +V D V++C G +D ++P
Sbjct: 116 --------------KQPDFSTSGQWQVVTECEGKQQVDV--FDGVLVCTGHHTDA-HLPL 158
Query: 169 -EFPPKKGPEAFHGKVIHSMDYSD-MDYEAAANLVKGKRVTVVGLQKSALDIAMECT-TA 225
FP G E F GK HS DY + +++ GKRV V+G+ S D+A+E + TA
Sbjct: 159 ESFP---GIEKFKGKYFHSRDYKNPVEF-------TGKRVIVIGIGNSGGDLAVEISHTA 208
Query: 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPL 285
+ + R W + G+P+ L +R ++ L+ + P
Sbjct: 209 KQV----FLSTRRGAWILNRVGKHGYPIDLLLSSR-------------IMYYLSRICGP- 250
Query: 286 RWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ 345
+ ++E + ++ FG+ PKH L + TV + +++ G + +K +
Sbjct: 251 -SLKNNYMEKQMNQRFDHEMFGLKPKHRALSQHP-----TVNDDLPNRIIAGLVKVKGNV 304
Query: 346 DFSFCEDGIVVDGQTTPLKTDLVILATGF 374
F E V + + D+VI ATG+
Sbjct: 305 K-EFTETAAVFEDGSREDGIDVVIFATGY 332
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In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P97501|FMO3_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Mus musculus GN=Fmo3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 173/388 (44%), Gaps = 74/388 (19%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTMLQ 52
KK++AI+GAGVSGL A + L +G P FE D+GG W ++
Sbjct: 2 KKKVAIIGAGVSGLAAIRSCLEEGLEPTCFERSDDVGGLWKFSDHIEEGRASIYQSVFTN 61
Query: 53 TPKQLYQFSDYPWPDSVTTDFPD---HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109
+ K++ F D+P+PD DFP+ H+++ +YI S+A +L K+I+F V I
Sbjct: 62 SSKEMMCFPDFPYPD----DFPNFMHHSKLQEYITSFAKEKNLLKYIQFETPVTSI---- 113
Query: 110 LSGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168
N P F + GKW V E K+ E D ++C G P++P
Sbjct: 114 --------------NKCPNFSTTGKWEVTTE--KHGKKETAVFDATMICSGHHI-FPHVP 156
Query: 169 E--FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226
+ FP G F GK HS DY + + KGKRV V+GL S DIA E +
Sbjct: 157 KDSFP---GLNRFKGKCFHSRDYKE------PGIWKGKRVLVIGLGNSGCDIAAELSH-- 205
Query: 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLR 286
+ T+ R+ W + + G+P + L RF + FL + L T +S
Sbjct: 206 -VAQKVTISSRSGSWVMSRVWDDGYPWDMVVLTRF---------QTFLKNNLPTAIS--D 253
Query: 287 WAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQD 346
W ++ + A K ++ +G+VP + L++ ++ ++ G + +K +
Sbjct: 254 WWYTRQMNARFKHEN----YGLVPLNRTLRKEP-----VFNDELPARILCGMVTIKPNVK 304
Query: 347 FSFCEDGIVVDGQTTPLKTDLVILATGF 374
F E V + T D VI ATG+
Sbjct: 305 -EFTETSAVFEDGTMFEAIDCVIFATGY 331
|
Involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. It N-oxygenates primary aliphatic alkylamines as well as secondary and tertiary amines. Acts on TMA to produce TMA-N-oxide. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 4 EC: 8 |
| >sp|Q9EQ76|FMO3_RAT Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Rattus norvegicus GN=Fmo3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 115/398 (28%), Positives = 174/398 (43%), Gaps = 94/398 (23%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTMLQ 52
K+++A++GAGVSGL A + L +G P FE D+GG W ++
Sbjct: 2 KRKVAVIGAGVSGLAAIRSCLEEGLEPTCFERSDDVGGLWKFSDHTEEGRASIYQSVFTN 61
Query: 53 TPKQLYQFSDYPWPDSVTTDFPD--HNQVL-DYIQSYASHFDLRKHIKFNRKVVGIEFEG 109
+ K++ F D+P+PD DFP+ HN L +YI S+A+ +L K+I+F V I
Sbjct: 62 SSKEMMCFPDFPYPD----DFPNFMHNSKLQEYITSFATEKNLLKYIQFETLVTRI---- 113
Query: 110 LSGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168
N P F + GKW V E KN E D V++C G P++P
Sbjct: 114 --------------NKCPDFSTTGKWEVTTE--KNSKKETAVFDAVMICSGHHV-YPHLP 156
Query: 169 E--FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226
+ FP G F GK HS DY + KGKRV V+GL S DIA E +
Sbjct: 157 KDSFP---GLNRFKGKCFHSRDYKE------PGTWKGKRVLVIGLGNSGCDIAAELSH-- 205
Query: 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLR 286
+ + R+ W + + G+P + + RF + FL + L T +S
Sbjct: 206 -VAQQVIISSRSGSWVMSRVWNDGYPWDMVVITRF---------QTFLKNNLPTAIS--D 253
Query: 287 WAISKFVEADIKKKHRLAKFGMVPKHSFLQ-------ELSS---CLTITVPEKFYDKVEE 336
W K + A K ++ +G++P + L+ EL + C T+++ + E
Sbjct: 254 WWYMKQMNARFKHEN----YGLMPLNGTLRKEPVFNDELPARILCGTVSIKPNVKEFTET 309
Query: 337 GSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGF 374
++ EDG V +G D VI ATG+
Sbjct: 310 SAVF----------EDGTVFEG------IDCVIFATGY 331
|
Involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. It N-oxygenates primary aliphatic alkylamines as well as secondary and tertiary amines. Acts on TMA to produce TMA-N-oxide. Has activities of methimazole S-oxidation and NADPH oxidation associated with the N- or S-oxidation of trimethylamine and thioacetamide. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 4 EC: 8 |
| >sp|P17635|FMO2_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Oryctolagus cuniculus GN=FMO2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 177/387 (45%), Gaps = 74/387 (19%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTMLQT 53
K++A++GAGVSGL++ K + +G P FE DIGG W ++ + T
Sbjct: 3 KKVAVIGAGVSGLISLKCCVDEGLEPTCFERTEDIGGLWRFKENVEDGRASIYQSVITNT 62
Query: 54 PKQLYQFSDYPWPDSVTTDFPD--HN-QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
K++ FSD+P P+ DFP+ HN ++L+Y + +A FDL K+I+F V+ ++
Sbjct: 63 SKEMSCFSDFPMPE----DFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVISVK---- 114
Query: 111 SGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP-- 168
F S G+W V + + V D V++C G +PNIP
Sbjct: 115 -------------KRPDFASSGQWEVVTQSNSKQQSAVF--DAVMVCSGH-HILPNIPLK 158
Query: 169 EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228
FP G E F G+ HS Y+ A L +GKR+ V+G+ SA DIA+E +
Sbjct: 159 SFP---GIEKFKGQYFHS-----RQYKHPAGL-EGKRILVIGIGNSASDIAVELSKKAA- 208
Query: 229 ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWA 288
+ R W + G+P ++ RF+ +L + +L M+ ++W
Sbjct: 209 --QVYISTRKGSWVMSRISEDGYPWDMVFHTRFSSMLRN---------VLPRMI--VKW- 254
Query: 289 ISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEK-FYDKVEEGSIILKKSQDF 347
+E + + +G+ P++ +L + L +P + Y ++ + + ++
Sbjct: 255 ---MMEQQMNRWFNHENYGLAPENKYLMK-EPVLNDDLPSRILYGTIKVKRRVKELTESA 310
Query: 348 SFCEDGIVVDGQTTPLKTDLVILATGF 374
+ EDG V + D+++ ATG+
Sbjct: 311 AIFEDGTVEE------DIDVIVFATGY 331
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P49326|FMO5_HUMAN Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Homo sapiens GN=FMO5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 175/390 (44%), Gaps = 68/390 (17%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M KK+IA++G GVSGL + K + +G P+ FE DIGG W ++ +
Sbjct: 1 MTKKRIAVIGGGVSGLSSIKCCVEEGLEPVCFERTDDIGGLWRFQENPEEGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F + QVL+Y + YA FDL K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHY-PNFMHNAQVLEYFRMYAKEFDLLKYIRFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP- 168
QP F + G+W V E E++ D V++C G ++ ++P
Sbjct: 116 --------------KQPDFATSGQWEVVTES--EGKKEMNVFDGVMVCTGHHTNA-HLPL 158
Query: 169 -EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227
FP G E F G+ HS DY + + GKRV ++G+ S D+A+E +
Sbjct: 159 ESFP---GIEKFKGQYFHSRDYKNPEG------FTGKRVIIIGIGNSGGDLAVEISQT-- 207
Query: 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRW 287
+ R W + +G+P L+ +R L H F+ + L+
Sbjct: 208 -AKQVFLSTRRGAWILNRVGDYGYPADVLFSSR----LTH-----FIWKICGQSLA---- 253
Query: 288 AISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDF 347
+K++E I ++ FG+ PKH L + T+ + +++ G + +K +
Sbjct: 254 --NKYLEKKINQRFDHEMFGLKPKHRALSQHP-----TLNDDLPNRIISGLVKVKGNVK- 305
Query: 348 SFCEDGIVVDGQTTPLKTDLVILATGFKGD 377
F E + + + D VI ATG+ D
Sbjct: 306 EFTETAAIFEDGSREDDIDAVIFATGYSFD 335
|
In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 418 | ||||||
| 255572694 | 517 | dimethylaniline monooxygenase, putative | 0.968 | 0.783 | 0.713 | 1e-175 | |
| 225428153 | 517 | PREDICTED: probable flavin-containing mo | 0.971 | 0.785 | 0.695 | 1e-172 | |
| 225428149 | 517 | PREDICTED: probable flavin-containing mo | 0.971 | 0.785 | 0.695 | 1e-172 | |
| 225428145 | 517 | PREDICTED: probable flavin-containing mo | 0.971 | 0.785 | 0.687 | 1e-171 | |
| 255572696 | 517 | dimethylaniline monooxygenase, putative | 0.964 | 0.779 | 0.702 | 1e-171 | |
| 255572698 | 517 | dimethylaniline monooxygenase, putative | 0.968 | 0.783 | 0.693 | 1e-170 | |
| 297744536 | 690 | unnamed protein product [Vitis vinifera] | 0.971 | 0.588 | 0.685 | 1e-169 | |
| 225428155 | 517 | PREDICTED: probable flavin-containing mo | 0.971 | 0.785 | 0.685 | 1e-169 | |
| 224103065 | 497 | predicted protein [Populus trichocarpa] | 0.928 | 0.780 | 0.705 | 1e-167 | |
| 255572700 | 517 | dimethylaniline monooxygenase, putative | 0.968 | 0.783 | 0.683 | 1e-167 |
| >gi|255572694|ref|XP_002527280.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223533373|gb|EEF35124.1| dimethylaniline monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/405 (71%), Positives = 334/405 (82%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSD 62
KKQIAI+GAGVSGLLACKY L KG PIVFEA+S +GG W KTVETT LQTPK LYQFSD
Sbjct: 2 KKQIAIIGAGVSGLLACKYTLSKGLQPIVFEAKSSLGGVWTKTVETTKLQTPKPLYQFSD 61
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+PWPDSVT FPD +QV DY+QSYASHFDL +HIKFN KV+GI +EG S E+ +SWS W
Sbjct: 62 FPWPDSVTEAFPDQSQVFDYLQSYASHFDLLRHIKFNAKVIGISYEGPSDEEMESWSLWG 121
Query: 123 GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
GNG+ F SRGKW V V+D + S+E++QV+F ILCVGRFSDVPN+PEFP KGPEAFHG+
Sbjct: 122 GNGEAFSSRGKWKVEVQDTQTLSSEIYQVEFAILCVGRFSDVPNVPEFPIGKGPEAFHGE 181
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
VIH+MDY++MDYE A N +KGKRV VVG QK ALDIAMEC+ NG+E+PC VLY+T HWN
Sbjct: 182 VIHAMDYTNMDYETARNFLKGKRVAVVGFQKFALDIAMECSAVNGIEHPCRVLYKTAHWN 241
Query: 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302
+PDY PWG PL YLYLNR AELL+HKPGEGFL SLLAT+L+PLRWA SKFVE+ +K K
Sbjct: 242 LPDYLPWGVPLTYLYLNRLAELLLHKPGEGFLFSLLATILTPLRWAFSKFVESHVKHKFP 301
Query: 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTP 362
L KFGMVPKHSFLQEL+SCL TVPEKFYDKVEEGSIIL K+ FSF + GI++DG P
Sbjct: 302 LKKFGMVPKHSFLQELNSCLIATVPEKFYDKVEEGSIILTKAPSFSFTKVGIIIDGHNQP 361
Query: 363 LKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
L+TDLVILATGFKG+ KLK+IF+S+TFQ+ GSP LPLYR
Sbjct: 362 LETDLVILATGFKGEKKLKDIFVSKTFQECFVGSPNAALPLYREC 406
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428153|ref|XP_002278651.1| PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera] gi|297744537|emb|CBI37799.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 283/407 (69%), Positives = 336/407 (82%), Gaps = 1/407 (0%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
ME+K + I+GAG+SGLLACKY L KG+ P+VFE+RS IGG W KT+ETT LQTPK ++QF
Sbjct: 1 MERK-VGIIGAGISGLLACKYTLSKGYTPVVFESRSSIGGVWTKTLETTKLQTPKPIFQF 59
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
SD+PWP SV DFP H+QVLDY+QSY HF L +HIKFN KV+ I +EG E+ ++W
Sbjct: 60 SDFPWPSSVVEDFPSHSQVLDYLQSYVHHFGLLRHIKFNSKVLSIAYEGPPEEEMQAWEL 119
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
W G G+PFGS+GKW + V D N STEV+QVDF+ILC+GRFSDVPNIPEFP KGPE FH
Sbjct: 120 WGGAGEPFGSKGKWNLTVNDTHNLSTEVYQVDFLILCIGRFSDVPNIPEFPAGKGPEMFH 179
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240
GKVIHSM+Y+ MD+E AA +KGKR TVVG QK ALDIAMEC+TANG E+PC VLY+TEH
Sbjct: 180 GKVIHSMEYAAMDFERAAEFIKGKRTTVVGFQKHALDIAMECSTANGGEHPCRVLYKTEH 239
Query: 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300
W + DY PWG PLAYLYLNRF+ELL+HKPGEGFLLSLLAT+LSP+RW SKFVE+ IK+K
Sbjct: 240 WTVTDYQPWGVPLAYLYLNRFSELLIHKPGEGFLLSLLATILSPVRWGFSKFVESYIKRK 299
Query: 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQT 360
L KFGMVPKHSFL E+SSCL T+PE FYD+VEEGSI+LKK+ F FC++GIVVDG++
Sbjct: 300 LSLEKFGMVPKHSFLNEISSCLISTLPEGFYDRVEEGSILLKKAPKFGFCKEGIVVDGES 359
Query: 361 TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
TPL+TDLVILATGFKGD KLK+IF+S TF+DY+ GSPT LPLYR
Sbjct: 360 TPLETDLVILATGFKGDEKLKDIFVSPTFRDYIIGSPTASLPLYREC 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428149|ref|XP_002278617.1| PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera] gi|297744539|emb|CBI37801.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 283/407 (69%), Positives = 336/407 (82%), Gaps = 1/407 (0%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
ME+K + I+GAG+SGLLACKY L KG+ P+VFE+RS IGG W KT+ETT LQTPK ++QF
Sbjct: 1 MERK-VGIIGAGISGLLACKYTLSKGYTPVVFESRSSIGGVWTKTLETTKLQTPKPIFQF 59
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
SD+PWP SV DFP H+QVLDY+QSYA HF L +HIKFN KV+ I +EG E+ ++W
Sbjct: 60 SDFPWPSSVVEDFPSHSQVLDYLQSYAHHFGLLRHIKFNSKVLSISYEGPPEEEMQAWEL 119
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
W G G+PFGS+GKW + V D N STEV+QVDF+ILC+GRFSDVPNIPEFP KGPE FH
Sbjct: 120 WGGAGEPFGSKGKWNLTVNDTHNLSTEVYQVDFLILCIGRFSDVPNIPEFPAGKGPEMFH 179
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240
GKVIHSM+Y+ MD+E AA +KGKR TVVG QK ALDIAMEC+TANG E+PC VLY+TEH
Sbjct: 180 GKVIHSMEYAAMDFERAAEFIKGKRTTVVGFQKHALDIAMECSTANGGEHPCRVLYKTEH 239
Query: 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300
W + DY PWG PLAYLYLNRF+ELL+HKPGEGFLLSLLAT+LSP+RW SKFVE+ IK+K
Sbjct: 240 WTVTDYQPWGVPLAYLYLNRFSELLIHKPGEGFLLSLLATILSPVRWGFSKFVESYIKRK 299
Query: 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQT 360
L KFGMVPKHSFL E+SSCL T+PE FYD+VE GSI+LKK+ F FC++GIVVDG++
Sbjct: 300 LSLEKFGMVPKHSFLNEISSCLISTLPEGFYDRVEGGSILLKKAPKFGFCKEGIVVDGES 359
Query: 361 TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
TPL+TDLVILATGFKGD KLK+IF+S TF+DY+ GSPT LPLYR
Sbjct: 360 TPLETDLVILATGFKGDEKLKDIFVSPTFRDYIIGSPTASLPLYREC 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428145|ref|XP_002281225.1| PREDICTED: probable flavin-containing monooxygenase 1 isoform 1 [Vitis vinifera] gi|297744541|emb|CBI37803.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 280/407 (68%), Positives = 335/407 (82%), Gaps = 1/407 (0%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
ME+K +AI+GAG+SGLLACKY L KGF P+VFE+RS IGG W KT+ETT LQTPK YQF
Sbjct: 1 MERK-VAIIGAGISGLLACKYTLSKGFTPVVFESRSSIGGVWRKTLETTKLQTPKPFYQF 59
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
SD+PWP SV +FP+ Q+ DY+QSYA HFDL +HIKFN KVV IE+EG S E+ ++W
Sbjct: 60 SDFPWPSSVKEEFPNQFQLFDYLQSYARHFDLLRHIKFNSKVVSIEYEGASDEEMQAWEL 119
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
W GNG+ F S+GKW + V D + STEV+QVDFVILC+GRF+DVPNIPEFPP KGPEAFH
Sbjct: 120 WGGNGEAFSSKGKWNLTVTDTQILSTEVYQVDFVILCIGRFTDVPNIPEFPPGKGPEAFH 179
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240
GKVIHSM+YS MD+ +AA ++GKR VVG QK ALDI+MEC+ ANG +NPC +LY+TEH
Sbjct: 180 GKVIHSMEYSAMDFASAAEFIEGKRTAVVGFQKHALDISMECSAANGEQNPCRLLYKTEH 239
Query: 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300
WN+PDY PWG PLAYLY +RF+ELLVHKPGEGF LSLLAT+LSP+RW SK+VE+ IKKK
Sbjct: 240 WNVPDYQPWGVPLAYLYFSRFSELLVHKPGEGFFLSLLATILSPVRWGFSKWVESHIKKK 299
Query: 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQT 360
L KFGMVPKHSFL+E+S+CL TVPE FYD+VE+GSIILKK+ FSFCE GIVVDG+T
Sbjct: 300 LSLEKFGMVPKHSFLKEISACLISTVPEGFYDRVEKGSIILKKAPKFSFCEQGIVVDGET 359
Query: 361 TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
TP++TDLVILATGFKG+ KLK+IF+S FQD + GSPT +P YR
Sbjct: 360 TPIETDLVILATGFKGEKKLKDIFVSPAFQDCILGSPTASVPFYREC 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572696|ref|XP_002527281.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223533374|gb|EEF35125.1| dimethylaniline monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 283/403 (70%), Positives = 330/403 (81%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSD 62
+KQIAI+GAGVSGLLACKY L KGF PIVFEA+S +GG W KTVETT LQTPK +YQFSD
Sbjct: 2 EKQIAIIGAGVSGLLACKYTLSKGFQPIVFEAKSSLGGVWTKTVETTKLQTPKPIYQFSD 61
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+PWPDSVT FPD +QVLDY+QSYASHFDL KHIKF+ KV+GI +EG S E+ KSWS W
Sbjct: 62 FPWPDSVTEVFPDQSQVLDYLQSYASHFDLLKHIKFSTKVIGISYEGPSDEEMKSWSLWG 121
Query: 123 GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
GNG+ F SRGKW V V+D + E++QVDFVILC+GRFSDVPNIPEFP KGPEAFHG+
Sbjct: 122 GNGEAFSSRGKWKVEVQDTQTLFNEIYQVDFVILCIGRFSDVPNIPEFPIGKGPEAFHGE 181
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
VIH+MDY +MD E A N +KGKRV VVG QK ALDIAMEC+ NG+E+PC VLY+T HWN
Sbjct: 182 VIHAMDYMNMDPETARNFLKGKRVAVVGFQKFALDIAMECSAVNGIEHPCRVLYKTAHWN 241
Query: 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302
+PDY PWG PL YLYLNR AELL+HKPGEGFL SLLAT+L+PLRWA S+FVE+ +K K
Sbjct: 242 LPDYLPWGVPLTYLYLNRLAELLLHKPGEGFLFSLLATILAPLRWAFSRFVESYVKNKFP 301
Query: 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTP 362
L KFGMVPKHSFLQ+ +SC VPEKFYDKVEEGSI L K+ FSF + GI++DG P
Sbjct: 302 LKKFGMVPKHSFLQDFNSCTIAIVPEKFYDKVEEGSITLTKAPSFSFSKVGIIIDGHNQP 361
Query: 363 LKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYR 405
L+TDLVILATGFKG+ KLK+IF+S+T +++ AGSP LPLYR
Sbjct: 362 LETDLVILATGFKGEKKLKDIFVSKTLREWFAGSPDAALPLYR 404
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572698|ref|XP_002527282.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223533375|gb|EEF35126.1| dimethylaniline monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 281/405 (69%), Positives = 337/405 (83%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSD 62
+KQIAI+GAG+SGL ACKY L KGF PIVFEARS IGG W KT++T LQTPKQ YQFSD
Sbjct: 2 EKQIAIIGAGISGLAACKYTLSKGFKPIVFEARSSIGGVWAKTIKTCCLQTPKQEYQFSD 61
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+PWPDSVT DFP QV+DY+ SYA HFDL KHIKFN +V+GI++EG E+ +SWS W
Sbjct: 62 FPWPDSVTDDFPTQQQVMDYLHSYAKHFDLLKHIKFNTRVIGIDYEGPLDEEMESWSLWG 121
Query: 123 GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
GNG+ F SRGKW + V+D + STEV++VDFVILC+GR SDVPNIPEFPP KGPEAFHGK
Sbjct: 122 GNGEAFSSRGKWNIEVQDNQTLSTEVYKVDFVILCIGRASDVPNIPEFPPGKGPEAFHGK 181
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
V+HSM++ DMD++ A N +KGKRVTVVG QKSALDIA EC+ ANG+E+PC VLY+TEHW+
Sbjct: 182 VVHSMEFYDMDHDIAHNFIKGKRVTVVGFQKSALDIATECSIANGIEHPCRVLYKTEHWH 241
Query: 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302
I D FPWG P+ YLYLNRF+ELLVHKPGE LLSLLAT+L+PLRWA +KFVE+ IK KH
Sbjct: 242 ISDEFPWGVPITYLYLNRFSELLVHKPGESLLLSLLATVLTPLRWACAKFVESHIKHKHH 301
Query: 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTP 362
LAK+GMVPKH FL++++SCL T+P+KFYDKVEEGSIIL K+ FSFC++GI+VDGQT P
Sbjct: 302 LAKYGMVPKHGFLEQINSCLLTTLPDKFYDKVEEGSIILTKAPSFSFCKEGIIVDGQTQP 361
Query: 363 LKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
L+TD+VILATGF+GD KL+NIF+S+ FQ Y+ GSP PLYR
Sbjct: 362 LETDIVILATGFRGDKKLQNIFVSKAFQKYIVGSPNAAFPLYREC 406
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744536|emb|CBI37798.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/407 (68%), Positives = 332/407 (81%), Gaps = 1/407 (0%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
ME+K + I+GAG+SGLLACKY L KG+ P+VFE+RS IGG W KT+ETT LQTPK ++QF
Sbjct: 1 MERK-VGIIGAGISGLLACKYTLSKGYTPVVFESRSSIGGVWTKTLETTKLQTPKPIFQF 59
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
SD+PWP SV DFP H+QVLDY+QSYA HF L +HIKFN KV+ I +EG E+ ++W
Sbjct: 60 SDFPWPSSVVEDFPSHSQVLDYLQSYAHHFGLLRHIKFNSKVLSIAYEGPPEEEMQAWEL 119
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
W G G PFGS+GKW + V D N STEV QVDF+ILC+GRFSDVPNIPEFP KGPE FH
Sbjct: 120 WGGAGDPFGSKGKWNLTVNDTHNLSTEVCQVDFLILCIGRFSDVPNIPEFPAGKGPEMFH 179
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240
GKVIHSM+Y+ MD+ AA +KGKR TVVG QK ALDIAMEC+TANG E+PC VLY+TEH
Sbjct: 180 GKVIHSMEYAAMDFARAAEFIKGKRTTVVGFQKHALDIAMECSTANGEEHPCRVLYKTEH 239
Query: 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300
W +PD+ PWG LA LYLNRF+ELL+HKPGEGFLLSLLAT+LSP+RW SKFVE+ IK+K
Sbjct: 240 WTVPDFQPWGVHLALLYLNRFSELLIHKPGEGFLLSLLATILSPVRWGFSKFVESYIKRK 299
Query: 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQT 360
L KFGMVPKHSFL ++SSCL VPE FYD+VE+GSI+LKK+ F FC++GIVVDG++
Sbjct: 300 LSLEKFGMVPKHSFLNQISSCLISIVPEGFYDRVEKGSILLKKAPKFGFCKEGIVVDGES 359
Query: 361 TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
TPL+TDLVILATGFKGD KLK+IF+S TF+DY+ GSPT LPLYR
Sbjct: 360 TPLETDLVILATGFKGDEKLKDIFVSPTFRDYIVGSPTASLPLYREC 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428155|ref|XP_002278690.1| PREDICTED: probable flavin-containing monooxygenase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/407 (68%), Positives = 332/407 (81%), Gaps = 1/407 (0%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
ME+K + I+GAG+SGLLACKY L KG+ P+VFE+RS IGG W KT+ETT LQTPK ++QF
Sbjct: 1 MERK-VGIIGAGISGLLACKYTLSKGYTPVVFESRSSIGGVWTKTLETTKLQTPKPIFQF 59
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
SD+PWP SV DFP H+QVLDY+QSYA HF L +HIKFN KV+ I +EG E+ ++W
Sbjct: 60 SDFPWPSSVVEDFPSHSQVLDYLQSYAHHFGLLRHIKFNSKVLSIAYEGPPEEEMQAWEL 119
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
W G G PFGS+GKW + V D N STEV QVDF+ILC+GRFSDVPNIPEFP KGPE FH
Sbjct: 120 WGGAGDPFGSKGKWNLTVNDTHNLSTEVCQVDFLILCIGRFSDVPNIPEFPAGKGPEMFH 179
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240
GKVIHSM+Y+ MD+ AA +KGKR TVVG QK ALDIAMEC+TANG E+PC VLY+TEH
Sbjct: 180 GKVIHSMEYAAMDFARAAEFIKGKRTTVVGFQKHALDIAMECSTANGEEHPCRVLYKTEH 239
Query: 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300
W +PD+ PWG LA LYLNRF+ELL+HKPGEGFLLSLLAT+LSP+RW SKFVE+ IK+K
Sbjct: 240 WTVPDFQPWGVHLALLYLNRFSELLIHKPGEGFLLSLLATILSPVRWGFSKFVESYIKRK 299
Query: 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQT 360
L KFGMVPKHSFL ++SSCL VPE FYD+VE+GSI+LKK+ F FC++GIVVDG++
Sbjct: 300 LSLEKFGMVPKHSFLNQISSCLISIVPEGFYDRVEKGSILLKKAPKFGFCKEGIVVDGES 359
Query: 361 TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
TPL+TDLVILATGFKGD KLK+IF+S TF+DY+ GSPT LPLYR
Sbjct: 360 TPLETDLVILATGFKGDEKLKDIFVSPTFRDYIVGSPTASLPLYREC 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103065|ref|XP_002312911.1| predicted protein [Populus trichocarpa] gi|222849319|gb|EEE86866.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/404 (70%), Positives = 330/404 (81%), Gaps = 16/404 (3%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYP 64
Q+AI+GAGVSGLLACKY + KGF+PIVFEAR+ IGGAWI TVETT LQTPK YQFSD+P
Sbjct: 1 QVAIIGAGVSGLLACKYTVSKGFNPIVFEARNSIGGAWINTVETTKLQTPKPAYQFSDFP 60
Query: 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGN 124
WPDSVT FP+ QVLDY+QSYA HFDL KHIKF+ KV+GI+++G S E+ +SWS W GN
Sbjct: 61 WPDSVTELFPNQYQVLDYLQSYAHHFDLLKHIKFSTKVLGIKYQGASDEEMQSWSLWGGN 120
Query: 125 GQPFGSRGKWTVAVEDAKNH-STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKV 183
G+PF SRGKW V +D +N STE +QVDFVILC+GRFSDVPNIPEFPP KGPEAFHG V
Sbjct: 121 GEPFSSRGKWIVEAQDTQNQLSTEAYQVDFVILCIGRFSDVPNIPEFPPDKGPEAFHGDV 180
Query: 184 IHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243
IHSMDY++MD E+A + V+GKRVTVVG QKSA+DIAMEC+ ANG+E+PC VLYRTEHWNI
Sbjct: 181 IHSMDYANMDCESATDFVRGKRVTVVGSQKSAMDIAMECSIANGVEHPCRVLYRTEHWNI 240
Query: 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303
PDY PWG PL YLYLNRF+EL+VHKPGEGFLLSLLAT+L+PL RL
Sbjct: 241 PDYNPWGVPLPYLYLNRFSELMVHKPGEGFLLSLLATILAPLL---------------RL 285
Query: 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPL 363
AKFGMVPKHSFLQEL+SCL TVP+ FYDKVEEGSIILKK+ FSFC++GI V G+ T L
Sbjct: 286 AKFGMVPKHSFLQELNSCLIATVPQGFYDKVEEGSIILKKAPSFSFCKEGIKVQGEDTTL 345
Query: 364 KTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
+TDLVILATGFKG+ KLK+IF S+ FQD + GSP +PL R
Sbjct: 346 ETDLVILATGFKGEKKLKDIFESKMFQDCILGSPDSAVPLCREC 389
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572700|ref|XP_002527283.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223533376|gb|EEF35127.1| dimethylaniline monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/405 (68%), Positives = 327/405 (80%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSD 62
+KQIAI+GAG+SGL ACKY L KGF PIVFEARS IGG W KT++T LQTPKQ YQFSD
Sbjct: 2 EKQIAIIGAGISGLAACKYTLSKGFKPIVFEARSSIGGVWAKTIKTCCLQTPKQDYQFSD 61
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+PWPDSV +FP QV+DY+ SYA HFDL KHIKFN KV GI+++G S E+ +SW+ W
Sbjct: 62 FPWPDSVKEEFPTQQQVMDYLHSYAKHFDLLKHIKFNSKVTGIDYKGPSDEELESWTLWG 121
Query: 123 GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
GNG+ F SRGKW V V+D +N ++V+QVDFVILC G SDVPN+PEFP KGPE FHGK
Sbjct: 122 GNGEAFSSRGKWNVRVQDNQNLYSQVYQVDFVILCTGWASDVPNVPEFPCGKGPEVFHGK 181
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
VIHSMDY DMD+E A N +KGKRVTVVG QKSALDIAMEC T NG+E+PC VLY+T HW+
Sbjct: 182 VIHSMDYYDMDHEIARNFLKGKRVTVVGFQKSALDIAMECATENGIEHPCRVLYKTAHWH 241
Query: 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302
I D FPWG PL LYLNRF+ELLVHKPGEGFLLSLLAT+L+PLRWA +KFVE+ IK KH
Sbjct: 242 ISDEFPWGVPLPLLYLNRFSELLVHKPGEGFLLSLLATILAPLRWASAKFVESHIKHKHP 301
Query: 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTP 362
L K+G+VP H FL++++SCL T+PEKFYDKVEEGSI+L + FSFCE+GI +DGQT P
Sbjct: 302 LEKYGVVPNHGFLEQINSCLLTTLPEKFYDKVEEGSIVLTNAPRFSFCEEGITLDGQTEP 361
Query: 363 LKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407
L+TD+VILATGF+GD KL+NIF S+ FQ + GSP LPLYR
Sbjct: 362 LETDIVILATGFRGDKKLQNIFTSKFFQHRIVGSPNAALPLYREC 406
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 418 | ||||||
| TAIR|locus:2202155 | 530 | FMO1 "AT1G19250" [Arabidopsis | 0.978 | 0.771 | 0.408 | 1.3e-82 | |
| UNIPROTKB|Q5LPA2 | 495 | SPO2946 "Monooxygenase domain | 0.581 | 0.490 | 0.313 | 2.8e-30 | |
| TIGR_CMR|SPO_2946 | 495 | SPO_2946 "monooxygenase domain | 0.581 | 0.490 | 0.313 | 2.8e-30 | |
| WB|WBGene00001480 | 518 | fmo-5 [Caenorhabditis elegans | 0.239 | 0.193 | 0.401 | 5.9e-25 | |
| WB|WBGene00001478 | 512 | fmo-3 [Caenorhabditis elegans | 0.246 | 0.201 | 0.350 | 1.6e-23 | |
| UNIPROTKB|E9PJF3 | 278 | FMO5 "Dimethylaniline monooxyg | 0.397 | 0.597 | 0.328 | 2e-22 | |
| UNIPROTKB|A6QLN7 | 533 | FMO5 "Dimethylaniline monooxyg | 0.401 | 0.315 | 0.344 | 3.6e-22 | |
| UNIPROTKB|F1S246 | 538 | LOC100151788 "Dimethylaniline | 0.385 | 0.299 | 0.360 | 5.2e-22 | |
| UNIPROTKB|F1SDB7 | 536 | FMO5 "Dimethylaniline monooxyg | 0.392 | 0.305 | 0.351 | 1.3e-21 | |
| UNIPROTKB|E2RFU7 | 540 | LOC478994 "Dimethylaniline mon | 0.392 | 0.303 | 0.354 | 2.2e-21 |
| TAIR|locus:2202155 FMO1 "AT1G19250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 172/421 (40%), Positives = 251/421 (59%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQ 59
+ ++AI+GAGVSGL A K L+ +P VFEA +GG W T ETT LQ+ + Y+
Sbjct: 8 LTSSRVAIIGAGVSGLAAAKNLV--HHNPTVFEASDSVGGVWRSCTYETTKLQSARVDYE 65
Query: 60 FSDYPWPDSVT-TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSW 118
FSD+PWP++ T FP + ++LDY++SYA HFDL K +KF KV+ + F G GE +
Sbjct: 66 FSDFPWPNNRDDTTFPPYLEILDYLESYAKHFDLLKFMKFGSKVIEVRFIG-DGETPQMV 124
Query: 119 SFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEA 178
G + W VAV+ + + H +FV++C G++ DVP IP FP KKGPE
Sbjct: 125 DL-GAYGNLLPGKPVWEVAVQIGDSGDIQWHAFEFVVVCTGKYGDVPRIPAFPAKKGPEM 183
Query: 179 FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN--PCTVLY 236
F GKV+HSMDY ++ E A+ L+ GK+V V+G +KSA+D+A+E AN E CT++
Sbjct: 184 FQGKVMHSMDYCKLEKEEASTLLSGKKVAVIGFKKSAIDLALESALANQGEGGKACTMVV 243
Query: 237 RTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFXXXXXXXXXXXXRWAISKFVEAD 296
RT HW IP Y+ WG P Y +R ++ L +P + F R +SKF+E+
Sbjct: 244 RTTHWGIPHYWVWGLPFFLFYSSRASQFLHDRPNQSFLRTLFCLLFSLLRAVVSKFIESY 303
Query: 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVV 356
+ K L K+G+ P HSF ++ +SC +PE F+++ ++G I KKS + F E+GIV
Sbjct: 304 VLWKLPLEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVF 363
Query: 357 DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLT 415
+ TT L+ D+VILATG+ G KLK I + + F+ +L P+ +PLYR H I +
Sbjct: 364 EDGTT-LEADVVILATGYDGKKKLKAI-VPEPFRTWLE-FPSGVMPLYRGTIHPLIPNMG 420
Query: 416 Y 416
+
Sbjct: 421 F 421
|
|
| UNIPROTKB|Q5LPA2 SPO2946 "Monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 84/268 (31%), Positives = 125/268 (46%)
Query: 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMD 188
G G WT+ +E A E DFV +C G+FSD NI P ++ A G+VIHS +
Sbjct: 113 GQPG-WTLTIEAAGRVRKE--DFDFVAICTGQFSD-KNILTHPGQEAFVAGGGEVIHSSE 168
Query: 189 YSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFP 248
Y+D + + +GK V V+G KSA DI + + G ++ T++YR W +P YF
Sbjct: 169 YTDSE------MARGKHVVVLGGSKSATDIVVNAARS-GAKS-VTMVYRENVWRVP-YFV 219
Query: 249 WGFPLAYLYLNRFAELLVHKPGEGFXXXXXXXXXXXXRWAISKFVEADIKKKHRLAKFGM 308
G L R E ++ G+ WA + +E +K + L K+ M
Sbjct: 220 GGINFKRLLYMRAQEQQFNQWGKSPLQRVIAALLKPLVWANFRGLETLLKAQLGLKKWNM 279
Query: 309 VPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQD-FSFCEDGIVV--DGQTTPLKT 365
VP +E S L I P F + +G++ K Q + EDG VV G P
Sbjct: 280 VPDTPIEKEASCSLPIVTPGLF-ESFRDGTV--KPIQGTYDRYEDGHVVLTTGDRVPC-- 334
Query: 366 DLVILATGFKGDVKLKNIFLSQTFQDYL 393
DL +LA G+K + +L+Q ++D L
Sbjct: 335 DLSVLAVGWKLGIP----YLAQEYRDKL 358
|
|
| TIGR_CMR|SPO_2946 SPO_2946 "monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 84/268 (31%), Positives = 125/268 (46%)
Query: 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMD 188
G G WT+ +E A E DFV +C G+FSD NI P ++ A G+VIHS +
Sbjct: 113 GQPG-WTLTIEAAGRVRKE--DFDFVAICTGQFSD-KNILTHPGQEAFVAGGGEVIHSSE 168
Query: 189 YSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFP 248
Y+D + + +GK V V+G KSA DI + + G ++ T++YR W +P YF
Sbjct: 169 YTDSE------MARGKHVVVLGGSKSATDIVVNAARS-GAKS-VTMVYRENVWRVP-YFV 219
Query: 249 WGFPLAYLYLNRFAELLVHKPGEGFXXXXXXXXXXXXRWAISKFVEADIKKKHRLAKFGM 308
G L R E ++ G+ WA + +E +K + L K+ M
Sbjct: 220 GGINFKRLLYMRAQEQQFNQWGKSPLQRVIAALLKPLVWANFRGLETLLKAQLGLKKWNM 279
Query: 309 VPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQD-FSFCEDGIVV--DGQTTPLKT 365
VP +E S L I P F + +G++ K Q + EDG VV G P
Sbjct: 280 VPDTPIEKEASCSLPIVTPGLF-ESFRDGTV--KPIQGTYDRYEDGHVVLTTGDRVPC-- 334
Query: 366 DLVILATGFKGDVKLKNIFLSQTFQDYL 393
DL +LA G+K + +L+Q ++D L
Sbjct: 335 DLSVLAVGWKLGIP----YLAQEYRDKL 358
|
|
| WB|WBGene00001480 fmo-5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIV----FEARSDIGGAW--------IKTV-ETT 49
KKQ+ +VGAG SGL + ++ LL HP V FE DIGG W + TV ++T
Sbjct: 4 KKQLLVVGAGASGLPSIRHALL---HPNVEVTCFEKSGDIGGLWNFKPDQTDLSTVMKST 60
Query: 50 MLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106
++ T K++ +SD+P P+ +F + ++ Y++SYA H+ L KHIK N VV IE
Sbjct: 61 VINTSKEMTAYSDFP-PEDTMANFMHNREMCRYLKSYAEHYGLLKHIKLNHSVVSIE 116
|
|
| WB|WBGene00001478 fmo-3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 40/114 (35%), Positives = 67/114 (58%)
Query: 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSDIGGAW--------IKTV-ETTMLQ 52
KKQ+ +VGAG SGL + ++ LL FE +++GG W + TV ++T++
Sbjct: 5 KKQLLVVGAGASGLPSIRHALLYPNVEVTCFEKTNEVGGLWNYKPYKTELSTVMKSTVIN 64
Query: 53 TPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106
T K++ FSD+P P+ +F + ++ Y+ +YA H +L K+IKFN V+ I+
Sbjct: 65 TSKEMTSFSDFP-PEDTMANFMHNTEMCRYLNNYAKHHELLKYIKFNNSVISID 117
|
|
| UNIPROTKB|E9PJF3 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming] 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 238 (88.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 67/204 (32%), Positives = 100/204 (49%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M KK+IA++G GVSGL + K + +G P+ FE DIGG W ++ +
Sbjct: 1 MTKKRIAVIGGGVSGLSSIKCCVEEGLEPVCFERTDDIGGLWRFQENPEEGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F + QVL+Y + YA FDL K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHYP-NFMHNAQVLEYFRMYAKEFDLLKYIRFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP- 168
QP F + G+W V E E++ D V++C G ++ ++P
Sbjct: 116 --------------KQPDFATSGQWEVVTES--EGKKEMNVFDGVMVCTGHHTNA-HLPL 158
Query: 169 -EFPPKKGPEAFHGKVIHSMDYSD 191
FP G E F G+ HS DY +
Sbjct: 159 ESFP---GIEKFKGQYFHSRDYKN 179
|
|
| UNIPROTKB|A6QLN7 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming]" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 71/206 (34%), Positives = 103/206 (50%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTM 50
M KK+IA++GAGVSGL + K L +G P+ FE DIGG W ++ +
Sbjct: 1 MAKKRIAVIGAGVSGLTSIKCCLEEGLEPLCFERSDDIGGLWRFQEEPEEGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F ++QVL+Y + YA FDL K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHYP-NFMHNSQVLEYFRMYAKEFDLLKYIQFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR--FSDVPNI 167
QP F + G+W V E EV+ D V++C G ++ +P +
Sbjct: 116 --------------KQPDFPTSGQWEVVTES--EGKKEVYVFDGVMVCTGHHTYAHLP-L 158
Query: 168 PEFPPKKGPEAFHGKVIHSMDYSDMD 193
FP G E F G+ HS DY + D
Sbjct: 159 ESFP---GIEKFKGQYFHSRDYKNPD 181
|
|
| UNIPROTKB|F1S246 LOC100151788 "Dimethylaniline monooxygenase [N-oxide-forming]" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 74/205 (36%), Positives = 111/205 (54%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI---KT-------VETTM 50
M K+IA++GAG+SGL A K L +G PI FE +DIGG W KT ++T+
Sbjct: 1 MPGKRIAVIGAGISGLGAIKICLEEGLEPICFEGSNDIGGLWRYEEKTESGRPTVYKSTI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPD--HN-QVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107
T K++ +SDYP+PD FP+ HN ++++Y+Q YA HF L KHI+F KV +
Sbjct: 61 CNTSKEMTAYSDYPFPDH----FPNYLHNSKIIEYLQMYAKHFHLLKHIQFLSKVCSVR- 115
Query: 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE-DAKNHSTEVHQVDFVILCVGRFSDVPN 166
++S F G+W V V+ + K S + D +++C G ++D P
Sbjct: 116 -------KRS---------DFSCTGQWDVVVQTEGKQES---YVFDGIMVCSGLYTD-PL 155
Query: 167 IP--EFPPKKGPEAFHGKVIHSMDY 189
+P +FP G +F G+ IHS +Y
Sbjct: 156 LPLQDFP---GITSFKGQCIHSWEY 177
|
|
| UNIPROTKB|F1SDB7 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming]" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 71/202 (35%), Positives = 101/202 (50%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE----------TTM 50
M KK+IA++GAG SGL + K L +G PI FE DIGG W VE + +
Sbjct: 1 MTKKRIAVIGAGASGLTSIKCCLEEGLEPICFERTDDIGGLWRFQVEPEEGRASIYKSVI 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
+ T K++ FSDYP PD +F +++VL+Y + YA FDL K+I+F V ++
Sbjct: 61 INTSKEMMCFSDYPIPDHYP-NFMHNSKVLEYFKMYAKEFDLLKYIRFKTTVCSVK---- 115
Query: 111 SGEDEKSWSFWNGNGQP-FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP- 168
QP F + G+W V E EV+ D V++C G ++ ++P
Sbjct: 116 --------------KQPDFSTSGQWEVVTEF--EGEKEVNIFDGVMVCTGHHTNA-HLPL 158
Query: 169 -EFPPKKGPEAFHGKVIHSMDY 189
FP G E F G+ HS DY
Sbjct: 159 ESFP---GIEKFKGQYFHSRDY 177
|
|
| UNIPROTKB|E2RFU7 LOC478994 "Dimethylaniline monooxygenase [N-oxide-forming]" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 249 (92.7 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 73/206 (35%), Positives = 106/206 (51%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----IKT-----VETTM 50
M K+IA++GAGVSGL A K L +G P FE DIGG W K+ E+
Sbjct: 1 MPPKRIAVIGAGVSGLGAIKICLEEGLEPTCFEGSHDIGGLWRYEEKAKSSRPSVYESAT 60
Query: 51 LQTPKQLYQFSDYPWPDSVTTDFPD--HN-QVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107
T K++ +SDYP+PD FP+ HN ++++Y++ Y HF L KHI+F KV +
Sbjct: 61 SNTSKEMTAYSDYPFPDH----FPNYLHNSRIMEYLRMYVQHFHLLKHIQFLSKVCSVR- 115
Query: 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167
++S F G+W V VE A + V D +++C G +SD P +
Sbjct: 116 -------KRS---------DFSCTGQWDVIVETAGKQKSYVF--DGIMVCSGLYSD-PFL 156
Query: 168 P--EFPPKKGPEAFHGKVIHSMDYSD 191
P FP G + F G+ IHS++Y +
Sbjct: 157 PLQNFP---GIKRFKGQYIHSLEYKN 179
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.14.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.14.13.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 418 | |||
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 1e-36 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 8e-36 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 3e-16 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 3e-13 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 5e-07 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 3e-06 | |
| PRK07233 | 434 | PRK07233, PRK07233, hypothetical protein; Provisio | 4e-06 | |
| PLN02976 | 1713 | PLN02976, PLN02976, amine oxidase | 1e-05 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 2e-05 | |
| TIGR02731 | 453 | TIGR02731, phytoene_desat, phytoene desaturase | 8e-05 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 1e-04 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 1e-04 | |
| COG3349 | 485 | COG3349, COG3349, Uncharacterized conserved protei | 2e-04 | |
| pfam13454 | 153 | pfam13454, NAD_binding_9, FAD-NAD(P)-binding | 2e-04 | |
| PLN02612 | 567 | PLN02612, PLN02612, phytoene desaturase | 2e-04 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 2e-04 | |
| COG1635 | 262 | COG1635, THI4, Ribulose 1,5-bisphosphate synthetas | 6e-04 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 7e-04 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 7e-04 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 9e-04 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 0.001 | |
| pfam01946 | 229 | pfam01946, Thi4, Thi4 family | 0.001 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 0.002 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 0.002 | |
| PLN02328 | 808 | PLN02328, PLN02328, lysine-specific histone demeth | 0.002 | |
| COG0665 | 387 | COG0665, DadA, Glycine/D-amino acid oxidases (deam | 0.003 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 0.004 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-36
Identities = 109/398 (27%), Positives = 174/398 (43%), Gaps = 94/398 (23%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW----------IKTVETTMLQ 52
K++A++GAGVSGL + K L +G P FE DIGG W ++ +
Sbjct: 1 AKKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTN 60
Query: 53 TPKQLYQFSDYPWPDSVTTDFPD---HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109
+ K++ FSD+P+P+ D+P+ +++ L+Y++ +A HFDL K+I+F V +
Sbjct: 61 SSKEMSCFSDFPFPE----DYPNFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSV---- 112
Query: 110 LSGEDEKSWSFWNGNGQP-FGSRGKWTVAVE-DAKNHSTEVHQVDFVILCVGRFSDVPNI 167
+P F + G+W V E + K E D V++C G ++ P++
Sbjct: 113 --------------TKRPDFSTSGQWEVVTEHEGK---QESAVFDAVMVCTGHHTN-PHL 154
Query: 168 P--EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225
P FP G F G+ HS DY + +GKRV V+GL S DIA+E +
Sbjct: 155 PLESFP---GINKFKGQYFHSRDYKHPE------GFQGKRVLVIGLGNSGGDIAVELS-- 203
Query: 226 NGLENPCTVLY--RTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLS 283
V RT W + WG+P L RF FL ++L T +S
Sbjct: 204 ---RTAAQVFLSTRTGSWVLSRVSDWGYPWDMLLTTRFCS---------FLRNILPTRIS 251
Query: 284 PLRWAISKFVEADIKKKHRLAKFGMVPKHSFL-------QELSSCLTITVPEKFYDKVEE 336
W +E + K+ +G+ PK+ L EL + + V+
Sbjct: 252 --NW----LMERQLNKRFNHENYGLSPKNGKLAKEPIVNDELPNRI-------LCGAVKV 298
Query: 337 GSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGF 374
+ + ++ + EDG V + D+VI ATG+
Sbjct: 299 KPSVKEFTETSAIFEDGTVEED------IDVVIFATGY 330
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-36
Identities = 89/385 (23%), Positives = 130/385 (33%), Gaps = 83/385 (21%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGGAW-IKTVETTMLQTPKQLY 58
+AI+GAG SGL A L G +FE R D+GG W L +PK L
Sbjct: 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLL 65
Query: 59 QFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSW 118
F P+ F ++ DYI+ Y + LR I+FN +V ++ DE
Sbjct: 66 GFPFLPFRWDE--AFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADW------DED-- 115
Query: 119 SFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEA 178
+WTV D T DFV++ G S P IP+F G +
Sbjct: 116 ------------TKRWTVTTSDGG---TGELTADFVVVATGHLS-EPYIPDFA---GLDE 156
Query: 179 FHGKVIHSMDY-SDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237
F G+++HS D+ + D +GKRV V+G SA+DIA E T+ R
Sbjct: 157 FKGRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGA---SVTLSQR 206
Query: 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLV--HKPGEGFLLSLLATMLSPLRWAISKFVEA 295
+ P P L L + P + ++A
Sbjct: 207 SP--------PHILPKPLLGEEVGGRLALRRALPAGW-------------ALRRGRVLDA 245
Query: 296 DIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIV 355
+ L F K + V + + D+
Sbjct: 246 LLPGAGYLPAFPAPDKRVEAL---------LRAALRFLVLDAGVREDLGPDY-------- 288
Query: 356 VDGQTTPLKTDLVILATGFKGDVKL 380
L D + G GDV++
Sbjct: 289 -APGDGRLVPDGDLFEAGASGDVEV 312
|
Length = 443 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 60/243 (24%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVET--------------- 48
+ +A++GAG +GL+A + L +G +VFE +GG W+ T ++
Sbjct: 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH 70
Query: 49 ----TMLQT--PKQLYQFSDYPW---PDSVTTD---FPDHNQVLDYIQSYASHFDLRKHI 96
L+T P++ + D+P+ D + D +P H +VL Y+Q +A F + + +
Sbjct: 71 SSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMV 130
Query: 97 KFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156
+F +VV +E + W + N F E+ D V++
Sbjct: 131 RFETEVVRVEPV------DGKWRVQSKNSGGFS---------------KDEIF--DAVVV 167
Query: 157 CVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216
C G +++ PN+ P G +++ GK IHS +Y D K + V V+G S
Sbjct: 168 CNGHYTE-PNVAHIP---GIKSWPGKQIHSHNYRVPDP------FKNEVVVVIGNFASGA 217
Query: 217 DIA 219
DI+
Sbjct: 218 DIS 220
|
Length = 461 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-13
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 55/227 (24%)
Query: 7 AIVGAGVSGLLACKYLLLKGFHPIV-FEARSDIGGAWIKTVETTMLQTPKQLY------- 58
+VGAG +G+ +LL G P++ + + GG W K L P Y
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFGMPD 60
Query: 59 ----QFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGED 114
P D + ++ Y++ A + L I+ + +V +E +G
Sbjct: 61 LNALSIDTSPKWDGKA-ELASGAEIAAYLEDLARRYGLP--IRLSTRVTAVERDG----- 112
Query: 115 EKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKK 174
G++ V + D + D+V+ G FS VP P FP
Sbjct: 113 -----------------GRFVVRLTDGETVRA-----DYVVDATGAFS-VPKPPGFPGAD 149
Query: 175 GPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221
+ +H +D + +KGK V V+G +A+D A+
Sbjct: 150 A------EGVHLVDVLE------RIDLKGKTVAVIGGGHTAIDAALN 184
|
Length = 202 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42
IVGAG+SGL+A L +G +V E R IGG
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNA 35
|
Length = 66 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 77/247 (31%)
Query: 6 IAIVGAGVSGL-LACKYLL--LKGFHPIVFEARSDIGGAWIK--TVETTMLQTP------ 54
+ +G G L LA LL + + FE + + W + +QT
Sbjct: 5 LIGIGIGPFNLSLAA--LLEEIPELRALFFERQPE--FDWHPGMLLPGATMQTSFLKDLV 60
Query: 55 ------------------KQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHI 96
+LY+F + T FP + DY+Q AS + ++
Sbjct: 61 TLADPTSPFSFLNYLHEHGRLYRFYNLE------TFFPSRREFNDYLQWAASQLE---NV 111
Query: 97 KFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156
+F +V +E + S V D + + ++L
Sbjct: 112 RFGAEVEEVEPDD--------------------SGFLLRVHTRDTGT--EQTYLARNLVL 149
Query: 157 CVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSA 215
G P IPE P G +V HS S+ L+ GKR+TVVG +SA
Sbjct: 150 GTGT---TPYIPECAKPLPGE-----RVFHS---SEYLLRKPR-LLAGKRITVVGGGQSA 197
Query: 216 LDIAMEC 222
+I ++
Sbjct: 198 AEIFLDL 204
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
IAIVG G++GL A L +G VFEA +GG
Sbjct: 2 IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
|
Length = 434 |
| >gnl|CDD|215527 PLN02976, PLN02976, amine oxidase | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++K+I +VGAG +GL A ++L +GF V EARS IGG
Sbjct: 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730
|
Length = 1713 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGG 40
KK + I+GAG +GL A Y LLK G+ V EA +GG
Sbjct: 2 TNKKSVVIIGAGPAGLTAA-YELLKRGYPVTVLEADPVVGG 41
|
Length = 479 |
| >gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---AW 42
++AI GAG++GL KYL G PIV EAR +GG AW
Sbjct: 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAW 41
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI-KTVETTMLQTPKQLYQFSDYP 64
+ I+GAG +GL YL G +V E + + +W + ++ L TP + +P
Sbjct: 3 VVIIGAGQAGLSVSYYLKQAGIDHVVLEKHT-VAHSWRDERWDSFCLVTPNWQCRLPGHP 61
Query: 65 WPDSVTTDFPDHNQVLDYIQSYASHFD--LRKHIKFNR 100
+ + F ++++ Y+ YA F+ +R+ +
Sbjct: 62 YDGTDPDGFMVKDEIVAYLDGYARSFNPPVREGTEVTS 99
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+AIVGAG SGL A YL G VFE + GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62
|
Length = 257 |
| >gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++AI GAG++GL A L G+ ++EAR +GG
Sbjct: 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37
|
Length = 485 |
| >gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 52/178 (29%)
Query: 7 AIVGAGVSGLLACKYLL-LKGFHPI---VFE-ARSDIGGAWIKT-VETTMLQTPKQ---- 56
AI+GAG GL + LL P+ VF+ + GG W +L TP
Sbjct: 1 AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQLLLNTPAAQMSL 60
Query: 57 -------LYQF--SDYPWPDSVTT-DFPDHNQVLDYIQSYASHFD--LRKHIKFNR---K 101
++ + + DFP +Y++ S + +
Sbjct: 61 FPDDPPSFLEWLEAQGEEEAGLDPDDFPPRALFGEYLRWRFSELLARAPAGVTVRVHRAE 120
Query: 102 VVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
VV + G G +TV + D + D V+L G
Sbjct: 121 VVDLRPRG----------------------GGYTVTLADG-----ATLRADAVVLATG 151
|
Length = 153 |
| >gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---AW 42
++ I GAG++GL KYL G PI+ EAR +GG AW
Sbjct: 95 KVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAW 135
|
Length = 567 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K++AI+GAG +GL A YLL KG +F+A GG
Sbjct: 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
|
Length = 652 |
| >gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+ IVGAG SGL A YL G +FE + GG
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67
|
Length = 262 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41
M + ++GAG++GL A L G V E +GG
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGR 41
|
Length = 487 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 7e-04
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K++A++GAG +GL A L KG+ +FEAR GG
Sbjct: 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
|
Length = 457 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFH--PIVFEARSDIGGAWIKTVET 48
+IAI+G G++GL A L G +FEA +GG ++TV+
Sbjct: 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKI 46
|
Length = 444 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K++A++G G +GL A +L G +FEA +GG
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
Length = 564 |
| >gnl|CDD|145231 pfam01946, Thi4, Thi4 family | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-GGAW 42
+ IVGAG SGL A YL KG + E GGAW
Sbjct: 20 VVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAW 57
|
This family includes a putative thiamine biosynthetic enzyme. Length = 229 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39
M + + IVGAG +G A + L G +V E S+ G
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39
|
Length = 396 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K++A+VG+G +GL A L G VFE IGG
Sbjct: 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
|
Length = 471 |
| >gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+E + +VGAG++GL+A + LL GF +V E R+ GG
Sbjct: 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275
|
Length = 808 |
| >gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41
K + I+G G+ GL A YL +G V EA GGA
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42
|
Length = 387 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K++AIVG+G +GL A +L G+ V+E+ S GG
Sbjct: 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
|
Length = 604 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 418 | |||
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 100.0 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 100.0 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.96 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.95 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.95 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.95 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.95 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.94 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.94 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.93 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.93 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.93 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.93 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.92 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.92 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.92 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.92 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.92 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.92 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.92 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.92 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.92 | |
| PLN02507 | 499 | glutathione reductase | 99.92 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.92 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.92 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.91 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.91 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.91 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.91 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.91 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.91 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.91 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.9 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.9 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.9 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.9 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.9 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.9 | |
| PLN02546 | 558 | glutathione reductase | 99.9 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.9 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.9 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.89 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.89 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.89 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.89 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.89 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.89 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.89 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.89 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.88 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.88 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.88 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.88 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.87 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.86 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.86 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.86 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.85 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.85 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.85 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.84 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.84 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.83 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.83 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.83 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.82 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.81 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.81 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.81 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.8 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.79 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.79 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.77 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.76 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.76 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.75 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.75 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.75 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.75 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.74 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.71 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.55 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.54 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.51 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.48 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.41 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 99.37 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.36 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.27 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.22 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.16 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.15 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.14 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 99.14 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 99.13 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 99.12 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.12 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 99.12 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.12 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.1 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.09 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.08 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.08 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 99.06 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.06 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.06 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.05 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.05 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 99.05 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.02 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 99.02 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.02 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 99.02 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.0 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.99 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.97 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.97 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.96 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.96 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.96 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.94 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.94 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.93 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.93 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.92 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.92 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.92 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.92 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.92 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.92 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.91 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.91 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.91 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.91 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.87 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.86 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.85 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.85 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.84 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.84 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.84 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.84 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.84 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.83 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.83 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.83 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.82 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.81 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.81 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.8 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.78 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.78 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.78 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.77 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.76 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.75 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.75 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.74 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.74 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.73 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.73 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.73 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.72 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.72 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.72 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.71 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.7 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.69 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.65 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.65 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.64 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.63 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.62 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.62 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.59 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.59 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.59 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.58 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.58 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.57 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.57 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.54 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.54 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.53 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.53 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.53 | |
| PLN02985 | 514 | squalene monooxygenase | 98.52 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.52 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.52 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.52 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.51 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.51 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.51 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.5 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.5 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.5 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.49 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.47 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 98.46 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.46 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.46 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.46 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.46 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.46 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.46 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.45 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.45 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.45 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.45 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.44 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.44 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.44 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.44 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.43 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.43 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.43 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.42 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.41 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.41 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.41 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.41 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.41 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.41 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.41 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.4 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.39 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.38 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.36 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.35 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.35 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.34 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.33 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.33 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.32 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.32 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.31 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.31 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.31 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.3 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.3 | |
| PLN02507 | 499 | glutathione reductase | 98.3 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.3 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.3 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 98.29 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.27 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.27 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.27 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.27 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 98.26 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 98.26 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.26 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.26 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.25 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.25 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.24 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.24 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.24 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.24 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.23 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.23 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.22 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.22 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.21 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.21 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.21 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.2 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.19 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.19 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 98.17 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.17 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.17 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.17 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.16 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.15 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.14 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.14 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.13 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.13 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 98.11 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.11 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.11 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.11 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.09 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.09 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.06 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.06 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.06 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.06 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 98.05 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.05 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.05 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.04 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 98.04 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.03 | |
| PLN02568 | 539 | polyamine oxidase | 98.02 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.02 | |
| PLN02268 | 435 | probable polyamine oxidase | 98.01 | |
| PLN02546 | 558 | glutathione reductase | 98.01 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.0 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.97 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.95 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.95 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.94 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.94 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.93 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.92 | |
| PLN02676 | 487 | polyamine oxidase | 97.9 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.89 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.86 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.86 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.85 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.84 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.84 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.84 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.83 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.8 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.78 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.75 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.75 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.72 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.7 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.69 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.69 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.67 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.66 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.6 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.59 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 97.58 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.58 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.54 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.53 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.51 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.51 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.5 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.5 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.49 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 97.48 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.47 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.46 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.46 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.43 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 97.38 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.37 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.35 | |
| PLN02612 | 567 | phytoene desaturase | 97.33 | |
| PLN03000 | 881 | amine oxidase | 97.33 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.32 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.26 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.24 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.23 | |
| PLN02976 | 1713 | amine oxidase | 97.22 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.21 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.18 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.17 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.16 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.16 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.11 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.1 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.09 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.09 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 97.05 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.04 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.0 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.98 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 96.95 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.95 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 96.9 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 96.89 | |
| PRK05868 | 372 | hypothetical protein; Validated | 96.86 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 96.86 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 96.84 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 96.81 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.78 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 96.77 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 96.75 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 96.73 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 96.64 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 96.62 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 96.61 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 96.59 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 96.58 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 96.58 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 96.57 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.55 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 96.51 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.47 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 96.46 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 96.45 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 96.44 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 96.36 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 96.35 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.3 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 96.29 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.29 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 96.29 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 96.24 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 96.23 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.21 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.16 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.14 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 96.12 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.1 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 96.09 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 96.08 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 96.04 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 96.0 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 95.99 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.97 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.96 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 95.96 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.94 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.94 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 95.89 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 95.87 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 95.85 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 95.82 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 95.79 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 95.79 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 95.77 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 95.76 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 95.76 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 95.68 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 95.64 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 95.62 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 95.62 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 95.61 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.6 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.58 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 95.56 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 95.55 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.47 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 95.47 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 95.42 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 95.39 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 95.36 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 95.32 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 95.32 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 95.27 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.22 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 95.19 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.17 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 95.16 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 95.16 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 95.14 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.14 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 95.1 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 95.09 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 95.08 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 95.05 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 95.01 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 95.0 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 95.0 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 94.9 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.9 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.89 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.85 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.76 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 94.76 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 94.7 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 94.69 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.68 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.64 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.61 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.6 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.59 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.56 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 94.51 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 94.48 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 94.45 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.42 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.41 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 94.4 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 94.4 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 94.38 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.33 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.3 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 94.23 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.2 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 94.17 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.1 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 94.07 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.0 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 93.98 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 93.97 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 93.93 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 93.91 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 93.8 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.72 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.68 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 93.64 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.49 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 93.45 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.45 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 93.43 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 93.4 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.38 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.35 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.34 |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=399.65 Aligned_cols=352 Identities=35% Similarity=0.643 Sum_probs=212.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc----------cCCcceecCCccccccCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK----------TVETTMLQTPKQLYQFSDYPWPDSVTTD 72 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (418)
+++|+|||||++||++|++|.+.|+++++||+++.+||.|+. .|+++.+++++..|.|+++|++.+ .+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~-~p~ 79 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPED-YPD 79 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCC-CSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCC-CCC
Confidence 478999999999999999999999999999999999999985 478899999999999999999976 578
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
|+++.++.+||+.+++++++.+.++|+++|+++++.+ |.. ..+.|.|++.+. +..++-.+|
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~--d~~---------------~~~~W~V~~~~~--g~~~~~~fD 140 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDP--DFS---------------ATGKWEVTTEND--GKEETEEFD 140 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEET--TTT----------------ETEEEEEETTT--TEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecc--ccC---------------CCceEEEEeecC--CeEEEEEeC
Confidence 9999999999999999999999999999999999875 111 135799987643 566678899
Q ss_pred EEEEeeccCCCCCCCCC--CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 014821 153 FVILCVGRFSDVPNIPE--FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~ 230 (418)
+||+|||.+ ..|++|. ++ |++.|.|.++|+.+|.+ ++..++|+|+|||+|.||+|+|.+|+..+.
T Consensus 141 ~VvvatG~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~------~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~--- 207 (531)
T PF00743_consen 141 AVVVATGHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRD------PEPFKGKRVLVVGGGNSGADIAVELSRVAK--- 207 (531)
T ss_dssp EEEEEE-SS-SCESB-----C---TGGGHCSEEEEGGG--T------GGGGTTSEEEEESSSHHHHHHHHHHTTTSC---
T ss_pred eEEEcCCCc-CCCCCChhhhh---hhhcCCeeEEccccCcC------hhhcCCCEEEEEeCCHhHHHHHHHHHHhcC---
Confidence 999999999 7999996 88 99999999999999988 456899999999999999999999988654
Q ss_pred CeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 014821 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (418)
Q Consensus 231 ~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (418)
+|++.+|++.|+.|+....|.|.|..+..|+..++..... .+.....+.+.+.........++.|
T Consensus 208 ~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp---------------~~~~~~~~~~~l~~~~~~~~~gl~p 272 (531)
T PF00743_consen 208 KVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLP---------------ESLSNWLLEKKLNKRFDHENYGLKP 272 (531)
T ss_dssp CEEEECC-------------------------------------------------------------------------
T ss_pred CeEEEEeccccccccccccccccccccccccccccccccc---------------ccccccccccccccccccccccccc
Confidence 5999999999999998878889988776776544322111 0111222233333344445566766
Q ss_pred CcccccccccccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
.... .+..+.+++++...+..|+|+++ ..|.++++++|+++||+++.++|.||+||||+.+ .+||+
T Consensus 273 ~~~~-----~~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~--------fpFL~ 338 (531)
T PF00743_consen 273 KHRF-----FSQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFS--------FPFLD 338 (531)
T ss_dssp -------------------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE-----------TTB-
T ss_pred cccc-----ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc--------ccccc
Confidence 6554 35678889999999999999987 4599999999999999984579999999999987 56777
Q ss_pred hhhcCCCCCCccceeee-eecc--Ccccc
Q 014821 391 DYLAGSPTEKLPLYRSA-HIYI--DTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~ 416 (418)
+.++...++.+.+|+++ .|.+ |+|+|
T Consensus 339 ~~~~~~~~~~~~LYk~vfp~~~~~ptLaf 367 (531)
T PF00743_consen 339 ESLIKVDDNRVRLYKHVFPPNLDHPTLAF 367 (531)
T ss_dssp TTTT-S-SSSSSEETTTEETETTSTTEEE
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77776677888999999 6665 67765
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=314.17 Aligned_cols=202 Identities=28% Similarity=0.581 Sum_probs=176.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---------------------cCCcceecCCcccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---------------------TVETTMLQTPKQLYQF 60 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---------------------~~~~~~l~~~~~~~~~ 60 (418)
..++|+|||||++||++|++|++.|++++|||+++.+||.|.. .|.++++++|...|.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999999999999999999999999965 2677788999999999
Q ss_pred CCCCCCCC------CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 61 SDYPWPDS------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 61 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
+++|++.. ....||++.++.+||+.+++++++.+.++++++|++|++.+ +.|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----------------------~~w 146 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD----------------------GKW 146 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC----------------------CeE
Confidence 99998753 23678999999999999999999966699999999998765 679
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKS 214 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~s 214 (418)
.|++.+.. +...+..||+||+|||.+ ..|++|.++ |.+.|.+.++|+..|+. ....++|+|+|||+|.|
T Consensus 147 ~V~~~~~~-~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~------~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 147 RVQSKNSG-GFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRV------PDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EEEEEcCC-CceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCC------ccccCCCEEEEECCCcC
Confidence 99987542 233467899999999998 689999999 99999999999999987 34578999999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 215 ALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 215 a~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
|+|+|.+|...+.. |++++|++
T Consensus 216 g~diA~~L~~~a~~---V~l~~r~~ 237 (461)
T PLN02172 216 GADISRDIAKVAKE---VHIASRAS 237 (461)
T ss_pred HHHHHHHHHHhCCe---EEEEEeec
Confidence 99999999987654 99999976
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=297.27 Aligned_cols=331 Identities=25% Similarity=0.415 Sum_probs=247.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccc-cCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|+++||+|||||++||++|++|.+.|.. ++|||+++.+||.|.. +|+++++++|+..++|++.|++ +...++...+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~--~~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR--WDEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC--CcccCCCccc
Confidence 3578999999999999999999999998 9999999999999998 9999999999999999999998 3577777778
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.+|+..++++|++...+.+++.|..++... ..+.|+|++.++.. .+ +.||+||+||
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~--------------------~~~~w~V~~~~~~~--~~-~~a~~vV~AT 140 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDE--------------------DTKRWTVTTSDGGT--GE-LTADFVVVAT 140 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecC--------------------CCCeEEEEEcCCCe--ee-EecCEEEEee
Confidence 9999999999999888899999998888776 24689999998742 22 7899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|.+ +.|.+|.|+ |.+.|.+.++|+++|.+ ..+.++|+|+|||+|+||+|+|.+|...+.. |||+.|+
T Consensus 141 G~~-~~P~iP~~~---G~~~f~g~~~HS~~~~~------~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~---vt~~qRs 207 (443)
T COG2072 141 GHL-SEPYIPDFA---GLDEFKGRILHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEVGAS---VTLSQRS 207 (443)
T ss_pred cCC-CCCCCCCCC---CccCCCceEEchhcCCC------ccccCCCeEEEECCCccHHHHHHHHHhcCCe---eEEEecC
Confidence 998 899999999 99999999999999998 4578999999999999999999999998855 9999999
Q ss_pred CcccccCCCCCC-CcchhhhhhHHHHHhhcCCCchhHHHH------HHhhhhHHHHHHHHHHHHHHHhhhh--hcccCCC
Q 014821 239 EHWNIPDYFPWG-FPLAYLYLNRFAELLVHKPGEGFLLSL------LATMLSPLRWAISKFVEADIKKKHR--LAKFGMV 309 (418)
Q Consensus 239 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 309 (418)
+.++.|.....- .+....+...+.. ............ ..............+....+..... ....++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (443)
T COG2072 208 PPHILPKPLLGEEVGGRLALRRALPA--GWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLG 285 (443)
T ss_pred CCceecccccccchHHHHHHhhhCcc--ceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcC
Confidence 999888654111 1111111111000 000000010100 0000111111222222222222111 1112233
Q ss_pred CCcccccccccccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCC
Q 014821 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
|.+.. .+.+...+-.+++....++++++...+..+.+..+..+++.+ ++.|.++.+||+..+
T Consensus 286 p~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~e~d~i~~~tg~~~~ 347 (443)
T COG2072 286 PDYAP-----GDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGRE-EEADVIITATGLDAN 347 (443)
T ss_pred CCCCc-----cccccccccchhhhhhhcccceeeccccccCCcceecCCCcc-ccceEEEecCCCchh
Confidence 33222 333455666888999999999999988888888888888777 999999999999873
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=287.21 Aligned_cols=202 Identities=38% Similarity=0.705 Sum_probs=182.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccccc----------CCcceecCCccccccCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT----------VETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
|..++|+|||||+|||++|++|.++|.++++|||.+.+||.|.+. |..+++++|+..|+|+++|++....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 347899999999999999999999999999999999999999996 8999999999999999999998767
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
..||+..++.+||+++++++++.+.++++++|..++... ++.|.|.+.+..+. .....
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~---------------------~gkW~V~~~~~~~~-~~~~i 141 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID---------------------KGKWRVTTKDNGTQ-IEEEI 141 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc---------------------CCceeEEEecCCcc-eeEEE
Confidence 788999999999999999999998999999999998876 25899999887533 57899
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCC--CCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKG--PEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
||.|++|||.+ ..|++|.++ | .+.|.|.++|+.+|+. .+..++|+|+|||.|.||+|++.+++..+..
T Consensus 142 fd~VvVctGh~-~~P~~P~~~---g~~~~~f~G~~iHS~~Yk~------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~ 211 (448)
T KOG1399|consen 142 FDAVVVCTGHY-VEPRIPQIP---GPGIESFKGKIIHSHDYKS------PEKFRDKVVLVVGCGNSGMDISLDLLRVAKE 211 (448)
T ss_pred eeEEEEcccCc-CCCCCCcCC---CCchhhcCCcceehhhccC------cccccCceEEEECCCccHHHHHHHHHHhccC
Confidence 99999999998 679999998 6 6799999999999997 4568899999999999999999998887655
Q ss_pred CCCeEEEEe
Q 014821 229 ENPCTVLYR 237 (418)
Q Consensus 229 ~~~V~~~~r 237 (418)
|++..+
T Consensus 212 ---v~~~~~ 217 (448)
T KOG1399|consen 212 ---VHLSVV 217 (448)
T ss_pred ---cceeee
Confidence 888765
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=220.97 Aligned_cols=192 Identities=38% Similarity=0.664 Sum_probs=137.7
Q ss_pred EEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccccCCcceecCCcccc---ccCCCCCCC-------CCCCCCCC
Q 014821 7 AIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLY---QFSDYPWPD-------SVTTDFPD 75 (418)
Q Consensus 7 vIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~~~~~~~l~~~~~~~---~~~~~~~~~-------~~~~~~~~ 75 (418)
+|||||++||++|.+|.++|++ ++|||+++.+||.|...++...+..|.... .+.++.... .....+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999998 999999999999999876666666655332 222211110 01356788
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
..++.+|++++++++++ .++++++|+++++++ +.|.|++.++ +++.||+||
T Consensus 81 ~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~~----------------------~~w~v~~~~~-----~~~~a~~VV 131 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGL--EIRFNTRVESVRRDG----------------------DGWTVTTRDG-----RTIRADRVV 131 (203)
T ss_dssp HHHHHHHHHHHHHHTTG--GEETS--EEEEEEET----------------------TTEEEEETTS------EEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCc--ccccCCEEEEEEEec----------------------cEEEEEEEec-----ceeeeeeEE
Confidence 99999999999999999 799999999999987 5699999887 689999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 156 lAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
+|||.. +.|.+|.++ + ..+. ..+|+..+.. ....++++|+|||+|.||+|+|..|.+.+. +|+++
T Consensus 132 lAtG~~-~~p~~p~~~---g-~~~~-~~~h~~~~~~------~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~---~V~~~ 196 (203)
T PF13738_consen 132 LATGHY-SHPRIPDIP---G-SAFR-PIIHSADWRD------PEDFKGKRVVVVGGGNSAVDIAYALAKAGK---SVTLV 196 (203)
T ss_dssp E---SS-CSB---S-T---T-GGCS-EEEEGGG-ST------TGGCTTSEEEEE--SHHHHHHHHHHTTTCS---EEEEE
T ss_pred Eeeecc-CCCCccccc---c-cccc-ceEehhhcCC------hhhcCCCcEEEEcChHHHHHHHHHHHhhCC---EEEEE
Confidence 999988 689999988 6 2222 6889988866 345778999999999999999999999874 59999
Q ss_pred EecCccc
Q 014821 236 YRTEHWN 242 (418)
Q Consensus 236 ~r~~~~~ 242 (418)
+|++.|+
T Consensus 197 ~R~~~~~ 203 (203)
T PF13738_consen 197 TRSPIWY 203 (203)
T ss_dssp ESS----
T ss_pred ecCCCCC
Confidence 9998764
|
... |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=231.66 Aligned_cols=232 Identities=22% Similarity=0.319 Sum_probs=145.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCCcceecCC-----------ccccccCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQTP-----------KQLYQFSDYPWPD 67 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~~~~l~~~-----------~~~~~~~~~~~~~ 67 (418)
+.+|+++||.||++|++|..|.+.+ .++.+||+.+.+ .|+. ..++..++++ ..-|+|..|....
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence 3589999999999999999999976 899999997644 5776 5677777653 2333333222111
Q ss_pred CC-------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 68 SV-------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 68 ~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
+. ...+|++.++.+|++|+++++.. .+.++++|++|++....+ ...|.|.+.+
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~------------------~~~~~V~~~~ 138 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGD------------------EDLFRVTTRD 138 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETT------------------EEEEEEEEEE
T ss_pred CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCC------------------ccEEEEEEee
Confidence 11 46778999999999999999985 699999999999977000 0359999976
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
.+|...++.|++||+|+| ..|.+|+.. ......+.++|+++|.... ....+.++|+|||||.||.|++.
T Consensus 139 -~~g~~~~~~ar~vVla~G---~~P~iP~~~---~~~~~~~~v~Hss~~~~~~----~~~~~~~~V~VVGgGQSAAEi~~ 207 (341)
T PF13434_consen 139 -SDGDGETYRARNVVLATG---GQPRIPEWF---QDLPGSPRVFHSSEYLSRI----DQSLAGKRVAVVGGGQSAAEIFL 207 (341)
T ss_dssp -TTS-EEEEEESEEEE-------EE---GGG---GGGTT-TTEEEGGGHHHHH----T-----EEEEEE-SSHHHHHHHH
T ss_pred -cCCCeeEEEeCeEEECcC---CCCCCCcch---hhcCCCCCEEEehHhhhcc----ccccCCCeEEEECCcHhHHHHHH
Confidence 456678999999999999 568888743 2111135799999886532 23567899999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhh-hHHHHHhhcCCCc
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYL-NRFAELLVHKPGE 271 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 271 (418)
.|...+.. .+|++++|++.+..... .|..+.++ ....+.+...|.+
T Consensus 208 ~L~~~~~~-~~V~~i~R~~~~~~~d~----s~f~ne~f~P~~v~~f~~l~~~ 254 (341)
T PF13434_consen 208 DLLRRGPE-AKVTWISRSPGFFPMDD----SPFVNEIFSPEYVDYFYSLPDE 254 (341)
T ss_dssp HHHHH-TT-EEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HH
T ss_pred HHHhCCCC-cEEEEEECCCccCCCcc----ccchhhhcCchhhhhhhcCCHH
Confidence 99998764 57999999986554433 45544444 3566777777654
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=219.78 Aligned_cols=259 Identities=19% Similarity=0.285 Sum_probs=179.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
+||+|||||++|+++|..|++.|.+++|||+.+ .||.|.... ....++.+ ....+..++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~---------~~~~~~~~-------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT---------EVENYPGF-------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc---------cccccCCC-------CCCCChHHHHHHH
Confidence 689999999999999999999999999999975 777654310 00011111 1122346888999
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
++.++++++ .+++ ++|++++... +.|.|.+.++ .++.||+||+|||.
T Consensus 64 ~~~~~~~gv--~~~~-~~v~~v~~~~----------------------~~~~v~~~~~-----~~~~~d~liiAtG~--- 110 (300)
T TIGR01292 64 KEQAVKFGA--EIIY-EEVIKVDLSD----------------------RPFKVKTGDG-----KEYTAKAVIIATGA--- 110 (300)
T ss_pred HHHHHHcCC--eEEE-EEEEEEEecC----------------------CeeEEEeCCC-----CEEEeCEEEECCCC---
Confidence 999999998 7777 8999998765 5577776654 48999999999995
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.|..|.++ |.+.+.+..++...... ....++++|+|||+|.+|+|+|..|...+. +|++++|.+.+..
T Consensus 111 ~~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~---~V~~v~~~~~~~~ 178 (300)
T TIGR01292 111 SARKLGIP---GEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDSAIEEALYLTRIAK---KVTLVHRRDKFRA 178 (300)
T ss_pred CcccCCCC---ChhhcCCccEEEeeecC------hhhcCCCEEEEECCChHHHHHHHHHHhhcC---EEEEEEeCcccCc
Confidence 46667777 76655444454433322 234568899999999999999999988764 4999999764210
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
.
T Consensus 179 ---~---------------------------------------------------------------------------- 179 (300)
T TIGR01292 179 ---E---------------------------------------------------------------------------- 179 (300)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCcchhhhhccC-cEEEeccC-ceeEecCc----EEEc---CC--ceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 324 ITVPEKFYDKVEEG-SIILKKSQ-DFSFCEDG----IVVD---GQ--TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 324 ~~~~~~~~~~~~~~-~v~~~~~~-v~~~~~~~----v~~~---~g--~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
+.+.+.+++. +|+++.+. +.+++.+. +.+. +| .+ +++|.||+|||++++.++.+. .
T Consensus 180 ----~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~~~~~~l~~--------~ 246 (300)
T TIGR01292 180 ----KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE-LKVDGVFIAIGHEPNTELLKG--------L 246 (300)
T ss_pred ----HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE-EEccEEEEeeCCCCChHHHHH--------h
Confidence 0011223333 67777665 66665442 4442 23 34 899999999999999544433 2
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.-+.++.+.++..+.++.||||.
T Consensus 247 ~~~~~~g~i~v~~~~~t~~~~vya 270 (300)
T TIGR01292 247 LELDEGGYIVTDEGMRTSVPGVFA 270 (300)
T ss_pred heecCCCcEEECCCCccCCCCEEE
Confidence 111345678887777779999996
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=213.77 Aligned_cols=261 Identities=21% Similarity=0.311 Sum_probs=190.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|+.+||+||||||+||+||.++.+.+.+ ++|+|+ ..+||...... ....+|- ...-.+..++
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~------------~venypg----~~~~~~g~~L 63 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT------------DVENYPG----FPGGILGPEL 63 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce------------eecCCCC----CccCCchHHH
Confidence 7789999999999999999999999998 666665 55664322200 0011110 1222345788
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+.+++.+..++. .+.. ..|..++... +.|.|.+.++ +++|++||+|||
T Consensus 64 ~~~~~~~a~~~~~--~~~~-~~v~~v~~~~----------------------~~F~v~t~~~------~~~ak~vIiAtG 112 (305)
T COG0492 64 MEQMKEQAEKFGV--EIVE-DEVEKVELEG----------------------GPFKVKTDKG------TYEAKAVIIATG 112 (305)
T ss_pred HHHHHHHHhhcCe--EEEE-EEEEEEeecC----------------------ceEEEEECCC------eEEEeEEEECcC
Confidence 8888888888887 5555 6777777654 2588888877 499999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+. ++.|.++ +..+|.+.-+|.+..|+ . .+++|+|+|||+|.+|+|-|..|...+.. |++++|++
T Consensus 113 ~~---~~~~~~~---~e~e~~g~gv~yc~~cd------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~---Vtlv~r~~ 176 (305)
T COG0492 113 AG---ARKLGVP---GEEEFEGKGVSYCATCD------G-FFKGKDVVVIGGGDSAVEEALYLSKIAKK---VTLVHRRD 176 (305)
T ss_pred Cc---ccCCCCC---cchhhcCCceEEeeecC------c-cccCCeEEEEcCCHHHHHHHHHHHHhcCe---EEEEecCc
Confidence 65 6666666 66688888888777665 3 68899999999999999999999998764 99999998
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
.+...
T Consensus 177 ~~ra~--------------------------------------------------------------------------- 181 (305)
T COG0492 177 EFRAE--------------------------------------------------------------------------- 181 (305)
T ss_pred ccCcC---------------------------------------------------------------------------
Confidence 63221
Q ss_pred cccccccCcchhhhhc-cCcEEEeccC-ceeEec---CcEEEcCC---ceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 320 SCLTITVPEKFYDKVE-EGSIILKKSQ-DFSFCE---DGIVVDGQ---TTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~---~~v~~~~g---~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.++ ..++.++.+. +.++.+ .+|.+.+. +..+.+|.|+.+.|+.|+.+ ++..
T Consensus 182 --------~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~--------~~~~ 245 (305)
T COG0492 182 --------EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTE--------LLKG 245 (305)
T ss_pred --------HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchH--------HHhh
Confidence 01112223 2378888875 788877 46777753 33389999999999999954 3333
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
....+.++.+.+...+.+++||+|.
T Consensus 246 ~~~~~~~g~I~v~~~~~TsvpGifA 270 (305)
T COG0492 246 LGVLDENGYIVVDEEMETSVPGIFA 270 (305)
T ss_pred ccccCCCCcEEcCCCcccCCCCEEE
Confidence 3333678888888889999999995
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=218.69 Aligned_cols=264 Identities=17% Similarity=0.298 Sum_probs=183.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+.+||+|||||++||++|..|+++|.++++||.. ..||.+..... +.++|. .....+..++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~------------~~~~~~----~~~~~~~~~~~~ 67 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE------------VENWPG----DPNDLTGPLLME 67 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce------------ECCCCC----CCCCCCHHHHHH
Confidence 4689999999999999999999999999999964 57775443210 111111 122334567888
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++.+.+..++. .+.+ .+|.+++... +.|+++... ..+.||+||+|||+.
T Consensus 68 ~~~~~~~~~~~--~~~~-~~v~~v~~~~----------------------~~~~v~~~~------~~~~~d~vilAtG~~ 116 (321)
T PRK10262 68 RMHEHATKFET--EIIF-DHINKVDLQN----------------------RPFRLTGDS------GEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHCCC--EEEe-eEEEEEEecC----------------------CeEEEEecC------CEEEECEEEECCCCC
Confidence 99999888876 5555 4677777655 557775432 268999999999954
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
|+.|+++ |.+.+.+..++.+.++. .....+++|+|||+|.+|+|+|..|...+.. |++++|++.+
T Consensus 117 ---~~~~~i~---g~~~~~~~~v~~~~~~~------~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~---Vtlv~~~~~~ 181 (321)
T PRK10262 117 ---ARYLGLP---SEEAFKGRGVSACATCD------GFFYRNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGF 181 (321)
T ss_pred ---CCCCCCC---CHHHcCCCcEEEeecCC------HHHcCCCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEECCcc
Confidence 6777777 77666666677665544 2346789999999999999999999987654 9999997742
Q ss_pred cccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccc
Q 014821 242 NIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSC 321 (418)
Q Consensus 242 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (418)
... . .
T Consensus 182 -~~~-~------------~------------------------------------------------------------- 186 (321)
T PRK10262 182 -RAE-K------------I------------------------------------------------------------- 186 (321)
T ss_pred -CCC-H------------H-------------------------------------------------------------
Confidence 110 0 0
Q ss_pred cccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCC-----ceeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 322 LTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQ-----TTPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g-----~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
+.+.+.+.+++.+|+++.+. +.+++++ +|++.++ .+.+++|.||+|+|++|+..+.+. .
T Consensus 187 ----~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~----- 256 (321)
T PRK10262 187 ----LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-Q----- 256 (321)
T ss_pred ----HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-c-----
Confidence 00112345677789988876 7778665 3555532 123999999999999999665432 1
Q ss_pred hhhcCCCCCCcccee-----eeeeccCcccc
Q 014821 391 DYLAGSPTEKLPLYR-----SAHIYIDTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 416 (418)
+...++++.++. .+.++.||||.
T Consensus 257 ---l~~~~g~i~vd~~~~~~~~~t~~~~VyA 284 (321)
T PRK10262 257 ---LELENGYIKVQSGIHGNATQTSIPGVFA 284 (321)
T ss_pred ---ccccCCEEEECCCCcccccccCCCCEEE
Confidence 112235555554 45889999995
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=219.18 Aligned_cols=271 Identities=16% Similarity=0.138 Sum_probs=184.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|.+++|||||||++|+.++..|.++. .+++++|+++.. ...|+..+......+..+
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------------------l~~plL~eva~g~l~~~~ 58 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------------------LFTPLLYEVATGTLSESE 58 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc----------------------ccchhhhhhhcCCCChhh
Confidence 67899999999999999999999975 899999998622 112222221222333345
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.--++..+++.+- .-+...+|++|+.+. .+|++.+. ..+.||+||+|+
T Consensus 59 i~~p~~~~~~~~~~--v~~~~~~V~~ID~~~------------------------k~V~~~~~-----~~i~YD~LVval 107 (405)
T COG1252 59 IAIPLRALLRKSGN--VQFVQGEVTDIDRDA------------------------KKVTLADL-----GEISYDYLVVAL 107 (405)
T ss_pred eeccHHHHhcccCc--eEEEEEEEEEEcccC------------------------CEEEeCCC-----ccccccEEEEec
Confidence 55556666665441 234457899999877 56777774 589999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchh------hhhhhh---cCCCEEEEEcCCCCHHHHHHHHhhhcCC-
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY------EAAANL---VKGKRVTVVGLQKSALDIAMECTTANGL- 228 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~v~VvG~G~sa~e~a~~l~~~~~~- 228 (418)
|+. +..+.++ |..+|....-...+-..... +..... ....+|+|+|||.+|+|+|.+|.++...
T Consensus 108 Gs~---~~~fgi~---G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l 181 (405)
T COG1252 108 GSE---TNYFGIP---GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRL 181 (405)
T ss_pred CCc---CCcCCCC---CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHH
Confidence 954 6666666 65554211111000000000 000001 1234799999999999999999986431
Q ss_pred ---------CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014821 229 ---------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKK 299 (418)
Q Consensus 229 ---------~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (418)
.-+|+++.+.++ ++|.+. .+++.
T Consensus 182 ~~~~~~~~~~~~V~LVea~p~-ILp~~~-----------~~l~~------------------------------------ 213 (405)
T COG1252 182 LKKFRVDPSELRVILVEAGPR-ILPMFP-----------PKLSK------------------------------------ 213 (405)
T ss_pred hhhhcCCccccEEEEEccCch-hccCCC-----------HHHHH------------------------------------
Confidence 016888888875 666544 12211
Q ss_pred hhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCc
Q 014821 300 KHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
...+.+++.+|+++.+. |..+++++|++++|.+.+++|.+|||+|.+++
T Consensus 214 -----------------------------~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~- 263 (405)
T COG1252 214 -----------------------------YAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS- 263 (405)
T ss_pred -----------------------------HHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-
Confidence 12346678899999998 99999999999998833999999999999999
Q ss_pred chhccccchhhhh-hhcC-CCCCCccceeee-eeccCcccc
Q 014821 379 KLKNIFLSQTFQD-YLAG-SPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
+++.+ .... +..+++.++..+ +++.|+||.
T Consensus 264 --------~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa 296 (405)
T COG1252 264 --------PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFA 296 (405)
T ss_pred --------hhhhhcChhhhccCCCEEeCCCcccCCCCCeEE
Confidence 44444 1222 457999999999 999999995
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=223.18 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=185.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|.+|+++|++++||++. +||.|...+. +..++ ...+....++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~------------~~~~~-----~~~~~~~~~l~~~ 271 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG------------IENFI-----SVPETEGPKLAAA 271 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc------------ccccC-----CCCCCCHHHHHHH
Confidence 479999999999999999999999999999873 8888754221 01111 1123456789999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++..++++++ .++++++|.++++.. +.|.|.+.++ .++.||.||+|||+.
T Consensus 272 l~~~~~~~gv--~i~~~~~V~~I~~~~----------------------~~~~V~~~~g-----~~i~a~~vViAtG~~- 321 (517)
T PRK15317 272 LEEHVKEYDV--DIMNLQRASKLEPAA----------------------GLIEVELANG-----AVLKAKTVILATGAR- 321 (517)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CeEEEEECCC-----CEEEcCEEEECCCCC-
Confidence 9999999998 788899999998865 4578877655 479999999999964
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|+.|.++ |.+.|.+..++.+..++ ....++++|+|||+|.+|+|+|..|...+.. |+++.+.+.+.
T Consensus 322 --~r~~~ip---G~~~~~~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~---Vtlv~~~~~l~ 387 (517)
T PRK15317 322 --WRNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVKH---VTVLEFAPELK 387 (517)
T ss_pred --cCCCCCC---CHHHhcCceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEECcccc
Confidence 6667777 77667666666554333 2335789999999999999999999887654 99999876421
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .
T Consensus 388 -~--~--------------------------------------------------------------------------- 389 (517)
T PRK15317 388 -A--D--------------------------------------------------------------------------- 389 (517)
T ss_pred -c--c---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred ccccCcchhhhhc-cCcEEEeccC-ceeEecC-----cEEEc---CCc-eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVE-EGSIILKKSQ-DFSFCED-----GIVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~~-----~v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
..+.+.+. ..+|+++.+. +..+..+ .+++. +|+ +.+++|.|++|+|++|+..+ ++.
T Consensus 390 -----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~--------l~~ 456 (517)
T PRK15317 390 -----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW--------LKG 456 (517)
T ss_pred -----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchH--------Hhh
Confidence 00011222 2467887776 6666554 24443 232 23899999999999998543 333
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.-+.++.+.++..+.+++||||.
T Consensus 457 ~v~~~~~g~i~vd~~l~Ts~p~IyA 481 (517)
T PRK15317 457 TVELNRRGEIIVDARGATSVPGVFA 481 (517)
T ss_pred heeeCCCCcEEECcCCCCCCCCEEE
Confidence 2211345677777777889999996
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=220.49 Aligned_cols=279 Identities=13% Similarity=0.128 Sum_probs=175.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-------cCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-------FSDYPWPDSVTT 71 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-------~~~~~~~~~~~~ 71 (418)
|.++||+|||||++|+++|..|++.|.+++|||+++.+||.|.. +.|...+......+. |..++.+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~----- 77 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK----- 77 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc-----
Confidence 45789999999999999999999999999999998889998866 455544332222111 1111111
Q ss_pred CCCChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 72 DFPDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 72 ~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
...+..++..+ +....+++++ .+.. .++..++. +.+.|...+
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~~------------------------~~~~v~~~~ 130 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQ-GRARFVDP------------------------HTVEVECPD 130 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEE-EEEEEecC------------------------CEEEEEeCC
Confidence 11233344333 3333444455 4443 34444432 225555433
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
+...++.||+||+|||+ .|..|+++ +... ..++++..+.. ....+++|+|||+|.+|+|+|.
T Consensus 131 ---g~~~~~~~d~lviATGs---~p~~p~~~---~~~~--~~v~~~~~~~~-------~~~~~~~v~IiGgG~~g~E~A~ 192 (461)
T PRK05249 131 ---GEVETLTADKIVIATGS---RPYRPPDV---DFDH--PRIYDSDSILS-------LDHLPRSLIIYGAGVIGCEYAS 192 (461)
T ss_pred ---CceEEEEcCEEEEcCCC---CCCCCCCC---CCCC--CeEEcHHHhhc-------hhhcCCeEEEECCCHHHHHHHH
Confidence 23357999999999995 46666655 3321 13444433332 2235799999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (418)
.|...+.. |+++.+++. +++... . .
T Consensus 193 ~l~~~g~~---Vtli~~~~~-~l~~~d-------~----~---------------------------------------- 217 (461)
T PRK05249 193 IFAALGVK---VTLINTRDR-LLSFLD-------D----E---------------------------------------- 217 (461)
T ss_pred HHHHcCCe---EEEEecCCC-cCCcCC-------H----H----------------------------------------
Confidence 99998765 999999875 333221 0 0
Q ss_pred hhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCC
Q 014821 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
+.+.+.+.+++.+++++.+. +..++ +++ +++++|++ +++|.||+|+|++
T Consensus 218 -------------------------~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~ 271 (461)
T PRK05249 218 -------------------------ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKK-IKADCLLYANGRT 271 (461)
T ss_pred -------------------------HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCE-EEeCEEEEeecCC
Confidence 00112234455677888775 66665 333 45567887 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+..+.. +....+. +.++.+.++..+.++.||||.
T Consensus 272 p~~~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 307 (461)
T PRK05249 272 GNTDGLN------LENAGLEADSRGQLKVNENYQTAVPHIYA 307 (461)
T ss_pred ccccCCC------chhhCcEecCCCcEeeCCCcccCCCCEEE
Confidence 9965321 1111111 345678888777788999985
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=218.95 Aligned_cols=266 Identities=16% Similarity=0.174 Sum_probs=171.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|||||||++|+.+|..|++. +.+|+|||+.+.++ |.. + ..|+- .............
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~------~----------~lp~~--~~~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FAN------C----------ALPYY--IGEVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--ccc------C----------Ccchh--hcCccCCHHHccc
Confidence 5899999999999999999886 56899999986443 111 0 00000 0011111122222
Q ss_pred H-HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 Y-IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 ~-l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+ .+.+.++.++ .++.+++|++|+... ..|.+.++.++....+.||+||+|||+
T Consensus 62 ~~~~~~~~~~~i--~v~~~~~V~~Id~~~------------------------~~v~~~~~~~~~~~~~~yd~lviAtGs 115 (438)
T PRK13512 62 YTPEKFYDRKQI--TVKTYHEVIAINDER------------------------QTVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred CCHHHHHHhCCC--EEEeCCEEEEEECCC------------------------CEEEEEECCCCcEEeeecCEEEECCCC
Confidence 2 1233455677 788889999998766 346555543344456899999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhh--hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAA--NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|..|+++ +. .++....+.... .... ....+++|+|||+|.+|+|+|..|...+.. |+++.++
T Consensus 116 ---~~~~~~~~---~~-----~~~~~~~~~~~~-~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~ 180 (438)
T PRK13512 116 ---SANSLGFE---SD-----ITFTLRNLEDTD-AIDQFIKANQVDKALVVGAGYISLEVLENLYERGLH---PTLIHRS 180 (438)
T ss_pred ---CCCCCCCC---CC-----CeEEecCHHHHH-HHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCc---EEEEecc
Confidence 46666543 21 122221111100 0000 122468999999999999999999888765 9999998
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+. +.+... . .
T Consensus 181 ~~-l~~~~d-------~----~---------------------------------------------------------- 190 (438)
T PRK13512 181 DK-INKLMD-------A----D---------------------------------------------------------- 190 (438)
T ss_pred cc-cchhcC-------H----H----------------------------------------------------------
Confidence 75 233211 0 0
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-C
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG-S 396 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~ 396 (418)
+.+.+.+.+++.+|+++.+. +..+++..+++++|++ +++|.||+|+|++++.++ +....+. +
T Consensus 191 -------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~-~~~D~vl~a~G~~pn~~~--------l~~~gl~~~ 254 (438)
T PRK13512 191 -------MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKV-EHYDMIIEGVGTHPNSKF--------IESSNIKLD 254 (438)
T ss_pred -------HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCE-EEeCEEEECcCCCcChHH--------HHhcCcccC
Confidence 01112345566678888876 7888877888888988 999999999999999543 3333232 3
Q ss_pred CCCCccceeeeeeccCcccc
Q 014821 397 PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ 416 (418)
.++.+.++..+.++.||||.
T Consensus 255 ~~G~i~Vd~~~~t~~~~IyA 274 (438)
T PRK13512 255 DKGFIPVNDKFETNVPNIYA 274 (438)
T ss_pred CCCcEEECCCcccCCCCEEE
Confidence 35678888777778999986
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=217.69 Aligned_cols=260 Identities=20% Similarity=0.254 Sum_probs=179.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|++.|.+++||++ .+||.+.....- ..+.. .......++.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~---------~~~~~--------~~~~~~~~l~~~ 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGI---------ENLIS--------VPYTTGSQLAAN 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCc---------ccccc--------cCCCCHHHHHHH
Confidence 48999999999999999999999999999985 478776542110 00110 111245678888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.++++++ .++.+++|.+++... +.+.+.+.++ ..+.||+||+|||+.
T Consensus 273 l~~~l~~~gv--~i~~~~~V~~I~~~~----------------------~~~~v~~~~g-----~~i~~d~lIlAtGa~- 322 (515)
T TIGR03140 273 LEEHIKQYPI--DLMENQRAKKIETED----------------------GLIVVTLESG-----EVLKAKSVIVATGAR- 322 (515)
T ss_pred HHHHHHHhCC--eEEcCCEEEEEEecC----------------------CeEEEEECCC-----CEEEeCEEEECCCCC-
Confidence 8888888888 788889999998755 4577777655 479999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|+.|+++ |...+....++.+..+. .....+++|+|||+|.+|+|+|..|...+.. |+++.+.+...
T Consensus 323 --~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~---Vtli~~~~~l~ 388 (515)
T TIGR03140 323 --WRKLGVP---GEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRH---VTVLEFADELK 388 (515)
T ss_pred --cCCCCCC---CHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCcE---EEEEEeCCcCC
Confidence 5667777 65545444444333222 2335689999999999999999999877654 99998765311
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .
T Consensus 389 ~---~--------------------------------------------------------------------------- 390 (515)
T TIGR03140 389 A---D--------------------------------------------------------------------------- 390 (515)
T ss_pred h---h---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred ccccCcchhhhhcc-CcEEEeccC-ceeEecC-----cEEEcC---Cc-eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVEE-GSIILKKSQ-DFSFCED-----GIVVDG---QT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~~-~~v~~~~~~-v~~~~~~-----~v~~~~---g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
..+.+.+++ .+|+++.+. +..+.++ +|++.+ |+ +.+++|.||+|+|+.|+..+++.
T Consensus 391 -----~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~-------- 457 (515)
T TIGR03140 391 -----KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKD-------- 457 (515)
T ss_pred -----HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhh--------
Confidence 001122332 467777775 6666544 255543 22 23899999999999999654432
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.-+..+.+.++..+.+++||||.
T Consensus 458 ~~~~~~~G~I~vd~~~~Ts~p~IyA 482 (515)
T TIGR03140 458 AVELNRRGEIVIDERGRTSVPGIFA 482 (515)
T ss_pred hcccCCCCeEEECCCCCCCCCCEEE
Confidence 2111335678888777779999995
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=218.11 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=170.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|+.+||+|||||++|+++|..|+++|.+|+|||+.+ .+||.|.. +.|...+..+.. ....| .......+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~----~~~~~----~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ----QHTDF----VRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc----cCCCH----HHHHHHHH
Confidence 888999999999999999999999999999999965 47888765 444322211110 00000 00000112
Q ss_pred HHHHHHHH-----HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 78 QVLDYIQS-----YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 78 ~~~~~l~~-----~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
.+.++++. ..+..++ .+.. .++..++. +.+.|...++ ..++.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~i~~------------------------~~~~v~~~~g----~~~~~~d 121 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNI--DVID-GQAEFINN------------------------HSLRVHRPEG----NLEIHGE 121 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCc--EEEE-EEEEEecC------------------------CEEEEEeCCC----eEEEEeC
Confidence 22233322 1111233 2332 34544432 2355554433 1369999
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
+||+|||+ .|..|+++ |.+.+.+ ++++..+.. ....+++|+|||+|.+|+|+|..|...+.. |
T Consensus 122 ~lviATGs---~p~~p~i~---G~~~~~~-v~~~~~~~~-------~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~---V 184 (441)
T PRK08010 122 KIFINTGA---QTVVPPIP---GITTTPG-VYDSTGLLN-------LKELPGHLGILGGGYIGVEFASMFANFGSK---V 184 (441)
T ss_pred EEEEcCCC---cCCCCCCC---CccCCCC-EEChhHhhc-------ccccCCeEEEECCCHHHHHHHHHHHHCCCe---E
Confidence 99999995 46777777 7654433 444333322 123467999999999999999999988765 9
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++.|++. ++|... ..
T Consensus 185 tli~~~~~-~l~~~~-----------~~---------------------------------------------------- 200 (441)
T PRK08010 185 TILEAASL-FLPRED-----------RD---------------------------------------------------- 200 (441)
T ss_pred EEEecCCC-CCCCcC-----------HH----------------------------------------------------
Confidence 99999774 444322 00
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEEEc-CCceeeeccEEEEccCCCCCcchhccccchh
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVVD-GQTTPLKTDLVILATGFKGDVKLKNIFLSQT 388 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~~~-~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~ 388 (418)
+...+.+.+++.+|+++.+. +.+++.+ .+.+. ++.+ +++|.||+|+|.+|+..+..
T Consensus 201 -------------~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~G~~pn~~~l~------ 260 (441)
T PRK08010 201 -------------IADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ-LAVDALLIASGRQPATASLH------ 260 (441)
T ss_pred -------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEeecCCcCCCCcC------
Confidence 00112335566678888776 7777643 34433 2335 88999999999999954321
Q ss_pred hhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 389 FQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+. +.++.+.++..+.++.||||.
T Consensus 261 ~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA 289 (441)
T PRK08010 261 PENAGIAVNERGAIVVDKYLHTTADNIWA 289 (441)
T ss_pred chhcCcEECCCCcEEECCCcccCCCCEEE
Confidence 1111121 345778888888788999985
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=216.19 Aligned_cols=274 Identities=15% Similarity=0.165 Sum_probs=172.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
|++++|||||||++|+.+|..|.+.+.+|+|||+++.+ .|. |..........+..++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~------~~~----------------~~l~~~~~g~~~~~~~~ 65 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM------LFT----------------PLLPQTTTGTLEFRSIC 65 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc------chh----------------hhHHHhcccCCChHHhH
Confidence 45789999999999999999998777899999997622 111 00000011111223444
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC---CCceeEEEeCEEEEe
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK---NHSTEVHQVDFVILC 157 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~i~~d~vIlA 157 (418)
..++.....++. .+...+|++|+... +...+...+.. +....++.||+||+|
T Consensus 66 ~~~~~~~~~~~~---~~i~~~V~~Id~~~----------------------~~v~~~~~~~~~~~~~~g~~i~yD~LViA 120 (424)
T PTZ00318 66 EPVRPALAKLPN---RYLRAVVYDVDFEE----------------------KRVKCGVVSKSNNANVNTFSVPYDKLVVA 120 (424)
T ss_pred HHHHHHhccCCe---EEEEEEEEEEEcCC----------------------CEEEEecccccccccCCceEecCCEEEEC
Confidence 445555555554 34558999998766 33333221110 012357999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCC---chhhhh-------------hhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSD---MDYEAA-------------ANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
||+. |..|.+| |..++ .+....+.+ ...... ......++|+|||+|.+|+|+|.+
T Consensus 121 tGs~---~~~~~ip---G~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~ 191 (424)
T PTZ00318 121 HGAR---PNTFNIP---GVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAE 191 (424)
T ss_pred CCcc---cCCCCCC---CHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHH
Confidence 9954 6666666 65432 111111110 000000 011223599999999999999999
Q ss_pred HhhhcC-----------CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHH
Q 014821 222 CTTANG-----------LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAIS 290 (418)
Q Consensus 222 l~~~~~-----------~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (418)
|..... ...+|+++++.+.. ++... ..
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-l~~~~-----------~~------------------------------ 229 (424)
T PTZ00318 192 LADFFRDDVRNLNPELVEECKVTVLEAGSEV-LGSFD-----------QA------------------------------ 229 (424)
T ss_pred HHHHHHHHHHhhhhcccccCEEEEEcCCCcc-cccCC-----------HH------------------------------
Confidence 986310 12469999988753 33221 00
Q ss_pred HHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEE
Q 014821 291 KFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVI 369 (418)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi 369 (418)
+.+.+.+.+++.+|+++.+. +.+++++.|.+++|++ +++|.||
T Consensus 230 -----------------------------------~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~-i~~d~vi 273 (424)
T PTZ00318 230 -----------------------------------LRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEV-IPTGLVV 273 (424)
T ss_pred -----------------------------------HHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCE-EEccEEE
Confidence 11222346677789999876 8899988999999998 9999999
Q ss_pred EccCCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 370 LATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 370 ~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
||+|.+++. +.+.++.. .+.+|++.++..+ .+++||||.
T Consensus 274 ~~~G~~~~~-~~~~~~l~-------~~~~G~I~Vd~~l~~~~~~~IfA 313 (424)
T PTZ00318 274 WSTGVGPGP-LTKQLKVD-------KTSRGRISVDDHLRVKPIPNVFA 313 (424)
T ss_pred EccCCCCcc-hhhhcCCc-------ccCCCcEEeCCCcccCCCCCEEE
Confidence 999999872 33333221 1446789998888 789999995
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-24 Score=197.09 Aligned_cols=332 Identities=21% Similarity=0.259 Sum_probs=212.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCCcceecC-----------CccccccCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQT-----------PKQLYQFSDYPWP 66 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~~~~l~~-----------~~~~~~~~~~~~~ 66 (418)
|+..|++.||-||+-|++|+.|..++ .+...+|+.+.+ .|+. ..++..+++ |...|+|.++...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 35689999999999999999999875 689999997654 5776 666666665 4455555544333
Q ss_pred CCC-------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE--EE
Q 014821 67 DSV-------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT--VA 137 (418)
Q Consensus 67 ~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~ 137 (418)
.++ ..+++++.++.+|++|.++++. .++|+++|.+|...+ . +...+ +.
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~-~-------------------d~~~~~~~~ 137 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLD-G-------------------DAVVRLFVV 137 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccC-C-------------------cceeEEEEE
Confidence 222 5778899999999999999883 699999999873322 1 12222 33
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCC-ceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH-GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
..++ .++.|+.||+++| ..|.+|+. ...+. +.++|+++|.... .+.....+|+|||+|.||.
T Consensus 138 t~~~-----~~y~ar~lVlg~G---~~P~IP~~-----f~~l~~~~vfHss~~~~~~----~~~~~~~~V~ViG~GQSAA 200 (436)
T COG3486 138 TANG-----TVYRARNLVLGVG---TQPYIPPC-----FRSLIGERVFHSSEYLERH----PELLQKRSVTVIGSGQSAA 200 (436)
T ss_pred cCCC-----cEEEeeeEEEccC---CCcCCChH-----HhCcCccceeehHHHHHhh----HHhhcCceEEEEcCCccHH
Confidence 3333 4899999999999 45888862 22222 3799999997644 2334445599999999999
Q ss_pred HHHHHHhhhcCC-CCCeEEEEecCcccccCCCCCCCcchhh-hhhHHHHHhhcCCCchhHH--HHHHhhhh----HHHHH
Q 014821 217 DIAMECTTANGL-ENPCTVLYRTEHWNIPDYFPWGFPLAYL-YLNRFAELLVHKPGEGFLL--SLLATMLS----PLRWA 288 (418)
Q Consensus 217 e~a~~l~~~~~~-~~~V~~~~r~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~ 288 (418)
|+...|...-.. ..++.|++|+..+....+. ++... ++....+++..+|.+.... ......+. .....
T Consensus 201 Ei~~~Ll~~~~~~~~~l~witR~~gf~p~d~S----kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~ 276 (436)
T COG3486 201 EIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS----KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEE 276 (436)
T ss_pred HHHHHHHhCCCCcCccceeeeccCCCCccccc----hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHH
Confidence 999999875433 2348999999987766665 33333 4456777777777543322 21222221 22222
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc---EEE-------c
Q 014821 289 ISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVV-------D 357 (418)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~---v~~-------~ 357 (418)
+.+.+.. +.... .+.++.++.+. +..++..+ +.+ .
T Consensus 277 Iy~~lY~---~~l~~-------------------------------~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~ 322 (436)
T COG3486 277 IYDLLYE---QSLGG-------------------------------RKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETG 322 (436)
T ss_pred HHHHHHH---HHhcC-------------------------------CCCCeeeccccceeeeecCCCceEEEEEeeccCC
Confidence 2222221 11110 12234444443 45554332 322 1
Q ss_pred CCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccC----ccccc
Q 014821 358 GQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYID----TLTYQ 417 (418)
Q Consensus 358 ~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~ 417 (418)
+.++ +++|+||+||||+.... .|-.+ |.+.+..+..+++.+.... +-+-+ .||+|
T Consensus 323 ~~~t-~~~D~vIlATGY~~~~P---~fL~~-l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvq 382 (436)
T COG3486 323 ELET-VETDAVILATGYRRAVP---SFLEG-LADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQ 382 (436)
T ss_pred CceE-EEeeEEEEecccccCCc---hhhhh-HHHhhcccccCCeEecCceeeecCCCCcceEEEe
Confidence 2345 89999999999996632 22223 4455666888888887777 32212 57776
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=215.74 Aligned_cols=274 Identities=18% Similarity=0.248 Sum_probs=171.7
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-cC----CCCCCCCCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-FS----DYPWPDSVTTD 72 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-~~----~~~~~~~~~~~ 72 (418)
|. .+||+|||||++|+++|..|+++|.+|+|||+. .+||.|.. +.|+..+.......+ +. .+.+... ..
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~- 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-EN- 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CC-
Confidence 53 689999999999999999999999999999995 79998766 555543332221111 00 0111100 00
Q ss_pred CCChhHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 73 FPDHNQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 73 ~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
......+.+ .++....+.++ ++.. .++..++. .+|.+ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~-g~~~~v~~--------------------------~~v~~-~g 127 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIE-GFARFVDA--------------------------HTVEV-NG 127 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccC--------------------------CEEEE-CC
Confidence 011122222 22233344455 4444 34444432 24555 33
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
.++.||+||+|||+ .|..|+++ |.+ .++++..+... ...+++|+|||+|.+|+|+|..
T Consensus 128 -----~~~~~d~lViATGs---~p~~p~i~---g~~----~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~ 185 (450)
T PRK06116 128 -----ERYTADHILIATGG---RPSIPDIP---GAE----YGITSDGFFAL-------EELPKRVAVVGAGYIAVEFAGV 185 (450)
T ss_pred -----EEEEeCEEEEecCC---CCCCCCCC---Ccc----eeEchhHhhCc-------cccCCeEEEECCCHHHHHHHHH
Confidence 47999999999994 57777777 654 23333332221 1346899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
|...+.. |+++.|.+.+ ++... . .
T Consensus 186 l~~~g~~---Vtlv~~~~~~-l~~~~-------~----~----------------------------------------- 209 (450)
T PRK06116 186 LNGLGSE---THLFVRGDAP-LRGFD-------P----D----------------------------------------- 209 (450)
T ss_pred HHHcCCe---EEEEecCCCC-ccccC-------H----H-----------------------------------------
Confidence 9888765 9999987752 22211 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc---EEEcCCceeeeccEEEEccCCC
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~---v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
+...+.+.+++.+|+++.+. +.+++. ++ +.+++|++ +++|.||+|+|++
T Consensus 210 ------------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~-i~~D~Vv~a~G~~ 264 (450)
T PRK06116 210 ------------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGET-LTVDCLIWAIGRE 264 (450)
T ss_pred ------------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcE-EEeCEEEEeeCCC
Confidence 01112234566678888776 777753 22 56678888 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+..... +....+. +.++.+.++..+.++.||||.
T Consensus 265 p~~~~l~------l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA 300 (450)
T PRK06116 265 PNTDGLG------LENAGVKLNEKGYIIVDEYQNTNVPGIYA 300 (450)
T ss_pred cCCCCCC------chhcCceECCCCcEecCCCCCcCCCCEEE
Confidence 9954211 1111111 345678888777789999995
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=215.52 Aligned_cols=275 Identities=16% Similarity=0.213 Sum_probs=168.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 75 (418)
+.+||+|||||++|+++|..|++.|.+|+|+|+ ..+||.+.. +.|...+...+..+.. ..+.+.... ....+
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~ 78 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNL-ENTFN 78 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCC-cCccC
Confidence 468999999999999999999999999999999 469998776 6666543333222211 111111100 00011
Q ss_pred hhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+..+ +....++.++ .++.++.+ .. .+ .+|.+ ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~-~~--~~------------------------~~v~v-~~--- 125 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHAR-FT--KD------------------------GTVEV-NG--- 125 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Ec--cC------------------------CEEEE-CC---
Confidence 1222222 2233334455 45554322 11 11 23444 22
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCC-CCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIP-EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
..+.||+||+|||+ .|..| +++ |.+. .+.+..+..+ ...+++|+|||+|.+|+|+|..|.
T Consensus 126 --~~~~~d~vIiAtGs---~p~~p~~i~---g~~~----~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~ 186 (450)
T TIGR01421 126 --RDYTAPHILIATGG---KPSFPENIP---GAEL----GTDSDGFFAL-------EELPKRVVIVGAGYIAVELAGVLH 186 (450)
T ss_pred --EEEEeCEEEEecCC---CCCCCCCCC---CCce----eEcHHHhhCc-------cccCCeEEEECCCHHHHHHHHHHH
Confidence 46999999999995 56777 677 6531 1222222221 123689999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.|.+.. ++... ..
T Consensus 187 ~~g~~---Vtli~~~~~i-l~~~d-------~~----------------------------------------------- 208 (450)
T TIGR01421 187 GLGSE---THLVIRHERV-LRSFD-------SM----------------------------------------------- 208 (450)
T ss_pred HcCCc---EEEEecCCCC-CcccC-------HH-----------------------------------------------
Confidence 88765 9999998753 33222 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+.+++.+|+++.+. +..++.+ .+++++|++.+++|.||+|+|++|+
T Consensus 209 ----------------------~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 209 ----------------------ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred ----------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 01112234556678888875 6666532 2566777433999999999999999
Q ss_pred cchhccccchhhhhhhc-CCCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLA-GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..... +....+ .+.++.+.++..+.++.||||.
T Consensus 267 ~~~l~------l~~~g~~~~~~G~i~vd~~~~T~~p~IyA 300 (450)
T TIGR01421 267 TKGLG------LENVGIKLNEKGQIIVDEYQNTNVPGIYA 300 (450)
T ss_pred cccCC------ccccCcEECCCCcEEeCCCCcCCCCCEEE
Confidence 65321 111111 1345678888777888999985
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=216.01 Aligned_cols=278 Identities=14% Similarity=0.167 Sum_probs=171.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (418)
.+||+|||||++|+++|..|+++|++|+|+|+.. +||.|.. +.|...+......+.+. .+.+.. .......
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 80 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA--ENVGIDF 80 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc--CCCccCH
Confidence 5899999999999999999999999999999966 9998866 66665544433333221 111111 1112344
Q ss_pred hHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
.++.+|.+. ..++.++ ++.. .++..++.. .+.|...++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~~~~~------------------------~~~v~~~~~---~ 130 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIR-GEAKLVDPN------------------------TVRVMTEDG---E 130 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccCC------------------------EEEEecCCC---c
Confidence 556666433 3334454 3443 344444322 234432221 1
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.++.||+||+|||+. |..| + |.+.....++++.+... ....+++++|||+|.+|+|+|..|...
T Consensus 131 -~~~~~d~lViAtGs~---p~~~--p---g~~~~~~~v~~~~~~~~-------~~~~~~~vvVvGgG~~g~E~A~~l~~~ 194 (462)
T PRK06416 131 -QTYTAKNIILATGSR---PREL--P---GIEIDGRVIWTSDEALN-------LDEVPKSLVVIGGGYIGVEFASAYASL 194 (462)
T ss_pred -EEEEeCEEEEeCCCC---CCCC--C---CCCCCCCeEEcchHhhC-------ccccCCeEEEECCCHHHHHHHHHHHHc
Confidence 579999999999965 5433 2 33211112333222222 113468999999999999999999888
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.|.+. ++|... . .
T Consensus 195 g~~---Vtli~~~~~-~l~~~~-------~----~--------------------------------------------- 214 (462)
T PRK06416 195 GAE---VTIVEALPR-ILPGED-------K----E--------------------------------------------- 214 (462)
T ss_pred CCe---EEEEEcCCC-cCCcCC-------H----H---------------------------------------------
Confidence 765 999999875 333221 0 0
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcCC---ceeeeccEEEEccCCCCC
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQ---TTPLKTDLVILATGFKGD 377 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~g---~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+.+++.+|+++.+. +..++.+ + +.+++| ++ +++|.||+|+|++|+
T Consensus 215 --------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~-i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 215 --------------------ISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEET-LEADYVLVAVGRRPN 273 (462)
T ss_pred --------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEE-EEeCEEEEeeCCccC
Confidence 00112234455678888876 7777643 3 344555 55 999999999999999
Q ss_pred cchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..+.. +....+...++.+.++..+.++.|+||.
T Consensus 274 ~~~l~------l~~~gl~~~~g~i~vd~~~~t~~~~VyA 306 (462)
T PRK06416 274 TENLG------LEELGVKTDRGFIEVDEQLRTNVPNIYA 306 (462)
T ss_pred CCCCC------chhcCCeecCCEEeECCCCccCCCCEEE
Confidence 55421 1122221225667777777788999985
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=215.09 Aligned_cols=176 Identities=24% Similarity=0.362 Sum_probs=128.5
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|+ .+||+|||||+|||++|..|++.|++++|||++ .+||.+..... ...+| ........++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~------------i~~~p-----g~~~~~~~~l 62 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE------------VVNYP-----GILNTTGPEL 62 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc------------cccCC-----CCcCCCHHHH
Confidence 54 489999999999999999999999999999995 67876543111 00011 0112344678
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+++++.++++++ .+ ++++|++++... +.+.|.+.++ .+.+++||+|||
T Consensus 63 ~~~l~~~~~~~gv--~~-~~~~V~~i~~~~----------------------~~~~V~~~~g------~~~a~~lVlATG 111 (555)
T TIGR03143 63 MQEMRQQAQDFGV--KF-LQAEVLDVDFDG----------------------DIKTIKTARG------DYKTLAVLIATG 111 (555)
T ss_pred HHHHHHHHHHcCC--EE-eccEEEEEEecC----------------------CEEEEEecCC------EEEEeEEEECCC
Confidence 8899988888887 55 467888888654 3466665443 588999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+. |+.|+++ |.+.+.+..++.+..+. .....+++|+|||+|.+|+|+|..|...+.. |+++.|.+
T Consensus 112 a~---p~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~---Vtli~~~~ 176 (555)
T TIGR03143 112 AS---PRKLGFP---GEEEFTGRGVAYCATCD------GEFFTGMDVFVIGGGFAAAEEAVFLTRYASK---VTVIVREP 176 (555)
T ss_pred Cc---cCCCCCC---CHHHhCCceEEEEeecC------hhhcCCCEEEEECCCHHHHHHHHHHHccCCE---EEEEEeCC
Confidence 64 7777777 76555454455433332 2345689999999999999999999877654 99999987
Q ss_pred c
Q 014821 240 H 240 (418)
Q Consensus 240 ~ 240 (418)
.
T Consensus 177 ~ 177 (555)
T TIGR03143 177 D 177 (555)
T ss_pred c
Confidence 4
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=207.26 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=182.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCC-----CCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSD-----YPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~ 73 (418)
|..||++|||+|++|..+|..+++.|.++.++|+...+||++.. +.|+..+...+..+.... +.+... ..-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~--~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE--VPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC--CCC
Confidence 45799999999999999999999999999999997789999888 788777665554432111 111111 101
Q ss_pred CChhHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+..++..+.+. ..+.+++ .++. ....-++. .+|.+...
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V--~vi~-G~a~f~~~--------------------------~~v~V~~~- 129 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGV--DVIR-GEARFVDP--------------------------HTVEVTGE- 129 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCC--EEEE-EEEEECCC--------------------------CEEEEcCC-
Confidence 222233333222 2333333 2222 22222221 23544442
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
..++++++++|+||| +.|..|+++ +++.- .++.+..... ...-+++++|||+|.+|+|+|..+
T Consensus 130 --~~~~~~a~~iiIATG---S~p~~~~~~---~~~~~--~~~~s~~~l~-------~~~lP~~lvIiGgG~IGlE~a~~~ 192 (454)
T COG1249 130 --DKETITADNIIIATG---SRPRIPPGP---GIDGA--RILDSSDALF-------LLELPKSLVIVGGGYIGLEFASVF 192 (454)
T ss_pred --CceEEEeCEEEEcCC---CCCcCCCCC---CCCCC--eEEechhhcc-------cccCCCEEEEECCCHHHHHHHHHH
Confidence 236899999999999 567777766 54432 2343333222 125689999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...|.. ||++.|.++ ++|..+ .
T Consensus 193 ~~LG~~---VTiie~~~~-iLp~~D-----------~------------------------------------------- 214 (454)
T COG1249 193 AALGSK---VTVVERGDR-ILPGED-----------P------------------------------------------- 214 (454)
T ss_pred HHcCCc---EEEEecCCC-CCCcCC-----------H-------------------------------------------
Confidence 999886 999999986 555443 0
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCc--eeeeccEEEEccCCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQT--TPLKTDLVILATGFK 375 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~--~~~~~D~Vi~atG~~ 375 (418)
.+.+.+.+.++++.++++.+. +..++.+ .+.+++|+ + +++|.|++|+|.+
T Consensus 215 ----------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~-~~ad~vLvAiGR~ 271 (454)
T COG1249 215 ----------------------EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGT-IEADAVLVAIGRK 271 (454)
T ss_pred ----------------------HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCE-EEeeEEEEccCCc
Confidence 011223345566778888886 5555543 26677776 5 8999999999999
Q ss_pred CCcchhccccchhhhhhhcCC-CCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAGS-PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+.+ .--|+...+.. ..+.+.++..+-+++|+||.
T Consensus 272 Pn~~------~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA 307 (454)
T COG1249 272 PNTD------GLGLENAGVELDDRGFIKVDDQMTTNVPGIYA 307 (454)
T ss_pred cCCC------CCChhhcCceECCCCCEEeCCccccCCCCEEE
Confidence 9943 11233334433 34789999555888999984
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=213.84 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=172.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc----cCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..+++.|.+|+|+|+ ..+||.+.. +.|...+...+...+ +..+.+... ..-.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 58999999999999999999999999999999 579998776 666655433322211 111111110 001111
Q ss_pred h-----------HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 N-----------QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~-----------~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
. .+.++++...++.++ ++.. .++..++.+. ..+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~v~~~~------------------------v~v~-~~g---- 126 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELLE-GRARLVGPNT------------------------VEVL-QDG---- 126 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-EEEEEecCCE------------------------EEEe-cCC----
Confidence 1 223344445555566 4544 4665554332 3332 222
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.++.||+||+|||+ .|..|+++ |.+. .+.+..... ....+++++|||+|.+|+|+|..+...
T Consensus 127 -~~~~~d~lIiATGs---~p~~p~i~---G~~~----~~~~~~~~~-------l~~~~~~vvVIGgG~~g~E~A~~l~~~ 188 (446)
T TIGR01424 127 -TTYTAKKILIAVGG---RPQKPNLP---GHEL----GITSNEAFH-------LPTLPKSILILGGGYIAVEFAGIWRGL 188 (446)
T ss_pred -eEEEcCEEEEecCC---cCCCCCCC---Cccc----eechHHhhc-------ccccCCeEEEECCcHHHHHHHHHHHHc
Confidence 47999999999994 57777777 6532 122111111 112478999999999999999999887
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.+.+. +++... . .+
T Consensus 189 G~~---Vtli~~~~~-~l~~~d-------~----~~-------------------------------------------- 209 (446)
T TIGR01424 189 GVQ---VTLIYRGEL-ILRGFD-------D----DM-------------------------------------------- 209 (446)
T ss_pred CCe---EEEEEeCCC-CCcccC-------H----HH--------------------------------------------
Confidence 765 999998774 233211 0 00
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
.+.+.+.+++.+++++.+. +..++. ++ +.+.+|++ +++|.||+|+|++|+...
T Consensus 210 ---------------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~viva~G~~pn~~~ 267 (446)
T TIGR01424 210 ---------------------RALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEE-IVADVVLFATGRSPNTKG 267 (446)
T ss_pred ---------------------HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcE-eecCEEEEeeCCCcCCCc
Confidence 0111234455678888775 666653 23 55667888 999999999999999543
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 268 l~------l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA 298 (446)
T TIGR01424 268 LG------LEAAGVELNDAGAIAVDEYSRTSIPSIYA 298 (446)
T ss_pred CC------ccccCeEECCCCcEEeCCCCccCCCCEEE
Confidence 21 1111121 345678888878779999995
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=209.36 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=164.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC-CCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD-IGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~-~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+.+. +||.+.. +.|...+...... . .+..
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~----~-----------~~~~ 65 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK----N-----------LSFE 65 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc----C-----------CCHH
Confidence 7889999999999999999999999999999999764 5877543 3443322111110 0 0111
Q ss_pred HHHHHHH-----------HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 78 QVLDYIQ-----------SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 78 ~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
.+..+.+ ....+.++ .+.. .++..++ . .+|.+..+ +..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~-g~~~~~~--~------------------------~~v~v~~~--~~~ 114 (438)
T PRK07251 66 QVMATKNTVTSRLRGKNYAMLAGSGV--DLYD-AEAHFVS--N------------------------KVIEVQAG--DEK 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEcc--C------------------------CEEEEeeC--CCc
Confidence 2222211 22233343 2332 2222221 1 23444432 122
Q ss_pred eEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 147 EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 147 ~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
.++.||+||+|||+. |..|+++ |.+... .++++..+... ...+++|+|||+|.+|+|+|..|...+
T Consensus 115 ~~~~~d~vViATGs~---~~~p~i~---G~~~~~-~v~~~~~~~~~-------~~~~~~vvIIGgG~~g~e~A~~l~~~g 180 (438)
T PRK07251 115 IELTAETIVINTGAV---SNVLPIP---GLADSK-HVYDSTGIQSL-------ETLPERLGIIGGGNIGLEFAGLYNKLG 180 (438)
T ss_pred EEEEcCEEEEeCCCC---CCCCCCC---CcCCCC-cEEchHHHhcc-------hhcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 579999999999954 6777777 654332 24443333221 134789999999999999999998877
Q ss_pred CCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhccc
Q 014821 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKF 306 (418)
Q Consensus 227 ~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (418)
.. |+++.|++. +++... ..+
T Consensus 181 ~~---Vtli~~~~~-~l~~~~-----------~~~--------------------------------------------- 200 (438)
T PRK07251 181 SK---VTVLDAAST-ILPREE-----------PSV--------------------------------------------- 200 (438)
T ss_pred Ce---EEEEecCCc-cCCCCC-----------HHH---------------------------------------------
Confidence 65 999999875 333221 000
Q ss_pred CCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEE-EcCCceeeeccEEEEccCCCCCcchhc
Q 014821 307 GMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIV-VDGQTTPLKTDLVILATGFKGDVKLKN 382 (418)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~-~~~g~~~~~~D~Vi~atG~~~~~~~~~ 382 (418)
...+.+.+++.+|+++.+. +..++.+ .+. ..+|++ +++|.||+|+|.+|+.+...
T Consensus 201 --------------------~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~-i~~D~viva~G~~p~~~~l~ 259 (438)
T PRK07251 201 --------------------AALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET-YRFDALLYATGRKPNTEPLG 259 (438)
T ss_pred --------------------HHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE-EEcCEEEEeeCCCCCcccCC
Confidence 0011234455677887775 6666543 333 345777 99999999999999954321
Q ss_pred cccchhhhhhhc-CCCCCCccceeeeeeccCcccc
Q 014821 383 IFLSQTFQDYLA-GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+ .+.++.+.++..+.++.||||.
T Consensus 260 ------l~~~~~~~~~~g~i~vd~~~~t~~~~Iya 288 (438)
T PRK07251 260 ------LENTDIELTERGAIKVDDYCQTSVPGVFA 288 (438)
T ss_pred ------chhcCcEECCCCcEEECCCcccCCCCEEE
Confidence 111111 1345668888777778999985
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=215.54 Aligned_cols=279 Identities=16% Similarity=0.174 Sum_probs=173.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEee---------CCCCCccccc--cCCcceecCCcccccc----CCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA---------RSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPD 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~---------~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~ 67 (418)
.+||+|||||++|+.+|..++++|.+|.|||+ ...+||.|.. ++|...+...+..+.. ..+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 48999999999999999999999999999996 3568999877 7776665443332210 1111110
Q ss_pred CCCCCCCChhHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 68 SVTTDFPDHNQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
. ...-.+...+.++... .....++ .+. ..++..++.+. +.|
T Consensus 105 ~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd~~~------------------------v~V 156 (499)
T PLN02507 105 N-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVGPNE------------------------VEV 156 (499)
T ss_pred C-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEecCCE------------------------EEE
Confidence 0 0001122333333222 2222333 222 24555554333 666
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
...++ ...++.||+||+|||+ .|..|.++ |.+. ..++.+... ....+++|+|||+|.+|+
T Consensus 157 ~~~~g---~~~~~~~d~LIIATGs---~p~~p~ip---G~~~----~~~~~~~~~-------l~~~~k~vvVIGgG~ig~ 216 (499)
T PLN02507 157 TQLDG---TKLRYTAKHILIATGS---RAQRPNIP---GKEL----AITSDEALS-------LEELPKRAVVLGGGYIAV 216 (499)
T ss_pred EeCCC---cEEEEEcCEEEEecCC---CCCCCCCC---Cccc----eechHHhhh-------hhhcCCeEEEECCcHHHH
Confidence 65443 3346899999999995 46777777 6432 122211111 113468999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHH
Q 014821 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (418)
Q Consensus 217 e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (418)
|+|..+...+.. |+++.|.+. +++... . .
T Consensus 217 E~A~~l~~~G~~---Vtli~~~~~-~l~~~d-------~----~------------------------------------ 245 (499)
T PLN02507 217 EFASIWRGMGAT---VDLFFRKEL-PLRGFD-------D----E------------------------------------ 245 (499)
T ss_pred HHHHHHHHcCCe---EEEEEecCC-cCcccC-------H----H------------------------------------
Confidence 999999888765 999998774 222211 0 0
Q ss_pred HHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEc
Q 014821 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILA 371 (418)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~a 371 (418)
+...+.+.+++.+|+++.+. +.+++. ++ +.+.+|++ +++|.||+|
T Consensus 246 -----------------------------~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~-i~~D~vl~a 295 (499)
T PLN02507 246 -----------------------------MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEE-FVADVVLFA 295 (499)
T ss_pred -----------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcE-EEcCEEEEe
Confidence 00112234556678888876 667653 23 55667888 999999999
Q ss_pred cCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|++|+..+.. +....+. +.++.+.++..+.++.||||.
T Consensus 296 ~G~~pn~~~l~------l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA 335 (499)
T PLN02507 296 TGRAPNTKRLN------LEAVGVELDKAGAVKVDEYSRTNIPSIWA 335 (499)
T ss_pred ecCCCCCCCCC------chhhCcEECCCCcEecCCCCcCCCCCEEE
Confidence 99999954321 1222221 345778888888889999995
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=206.57 Aligned_cols=262 Identities=18% Similarity=0.204 Sum_probs=167.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|+ ++|||||||+||+.+|..|++. +.+|+||++.+.. .|....+ ...+ .. .....+
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------~y~~~~l-----~~~~---------~~-~~~~~~ 58 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------EYNKPDL-----SHVF---------SQ-GQRADD 58 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------CcCcCcC-----cHHH---------hC-CCCHHH
Confidence 53 6899999999999999999885 4589999997521 1110000 0000 01 111223
Q ss_pred HHH-HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 79 VLD-YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 79 ~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
+.. ...++.+++++ .++++++|++++... ..|.+. + ..+.||+||+|
T Consensus 59 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~-~-----~~~~yd~LVlA 106 (377)
T PRK04965 59 LTRQSAGEFAEQFNL--RLFPHTWVTDIDAEA------------------------QVVKSQ-G-----NQWQYDKLVLA 106 (377)
T ss_pred hhcCCHHHHHHhCCC--EEECCCEEEEEECCC------------------------CEEEEC-C-----eEEeCCEEEEC
Confidence 333 24556677788 788889999998765 456543 3 47999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
||+ .|..|+++ |.+. ++....+.+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+
T Consensus 107 TG~---~~~~p~i~---G~~~----v~~~~~~~~~~-~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~ 172 (377)
T PRK04965 107 TGA---SAFVPPIP---GREL----MLTLNSQQEYR-AAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDN 172 (377)
T ss_pred CCC---CCCCCCCC---CCce----EEEECCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEec
Confidence 995 46777777 6542 22222111110 0112334678999999999999999999988765 999998
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+.. .+... + ..
T Consensus 173 ~~~~-l~~~~------~----~~--------------------------------------------------------- 184 (377)
T PRK04965 173 AASL-LASLM------P----PE--------------------------------------------------------- 184 (377)
T ss_pred CCcc-cchhC------C----HH---------------------------------------------------------
Confidence 7752 22110 0 00
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
..+.+.+.+++.+|+++.+. +..++.+ .+.+++|++ +++|.||+|+|++++..+.+.+
T Consensus 185 --------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vI~a~G~~p~~~l~~~~-------- 247 (377)
T PRK04965 185 --------VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRS-IEVDAVIAAAGLRPNTALARRA-------- 247 (377)
T ss_pred --------HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcE-EECCEEEECcCCCcchHHHHHC--------
Confidence 01112234455567777665 6666643 267788988 9999999999999985544332
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.... .+.++..+.++.||||.
T Consensus 248 gl~~~~-gi~vd~~l~ts~~~VyA 270 (377)
T PRK04965 248 GLAVNR-GIVVDSYLQTSAPDIYA 270 (377)
T ss_pred CCCcCC-CEEECCCcccCCCCEEE
Confidence 232333 47777777778999985
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=213.88 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=168.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFP 74 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 74 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+. .+||.|.. +.|...+...+..+... .+.+... .....
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~ 80 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVG-GPVSV 80 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccC-ccCcc
Confidence 56799999999999999999999999999999994 68888766 45544332222221111 1111100 00112
Q ss_pred ChhHHHHHHHHH-----------HHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 75 DHNQVLDYIQSY-----------ASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 75 ~~~~~~~~l~~~-----------~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
+...+.++.+.. .++. ++ .++.++.+ .++ . .+|.+. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~-~~~--~------------------------~~v~v~-~- 129 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHAR-FES--P------------------------NTVRVG-G- 129 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEE-Ecc--C------------------------CEEEEC-c-
Confidence 333444333322 2332 44 44443322 111 1 235442 2
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
.++.||+||+|||+ .|..|+++ |.+.. .++.+..... ....+++|+|||+|.+|+|+|..|
T Consensus 130 ----~~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~~~-------~~~~~~~vvVIGgG~~g~E~A~~l 190 (463)
T PRK06370 130 ----ETLRAKRIFINTGA---RAAIPPIP---GLDEV--GYLTNETIFS-------LDELPEHLVIIGGGYIGLEFAQMF 190 (463)
T ss_pred ----EEEEeCEEEEcCCC---CCCCCCCC---CCCcC--ceEcchHhhC-------ccccCCEEEEECCCHHHHHHHHHH
Confidence 47999999999995 57777777 65432 2333333222 123478999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...+.. |+++.+.+. +++... . .+
T Consensus 191 ~~~G~~---Vtli~~~~~-~l~~~~-------~----~~----------------------------------------- 214 (463)
T PRK06370 191 RRFGSE---VTVIERGPR-LLPRED-------E----DV----------------------------------------- 214 (463)
T ss_pred HHcCCe---EEEEEcCCC-CCcccC-------H----HH-----------------------------------------
Confidence 988765 999999875 333221 0 00
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEE--cC-CceeeeccEEEEccCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVV--DG-QTTPLKTDLVILATGF 374 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~--~~-g~~~~~~D~Vi~atG~ 374 (418)
.+.+.+.+++.+|+++.+. +..++.+ + +.+ .+ +++ +++|.||+|+|+
T Consensus 215 ------------------------~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~Vi~A~G~ 269 (463)
T PRK06370 215 ------------------------AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPE-ITGSHILVAVGR 269 (463)
T ss_pred ------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEECcCC
Confidence 0111234455678888775 6666543 2 333 23 345 999999999999
Q ss_pred CCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+..... +....+. +.++.+.++..+.++.||||.
T Consensus 270 ~pn~~~l~------l~~~g~~~~~~G~i~vd~~l~t~~~~IyA 306 (463)
T PRK06370 270 VPNTDDLG------LEAAGVETDARGYIKVDDQLRTTNPGIYA 306 (463)
T ss_pred CcCCCCcC------chhhCceECCCCcEeECcCCcCCCCCEEE
Confidence 99954110 1111111 345678888878778999985
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=214.33 Aligned_cols=277 Identities=17% Similarity=0.212 Sum_probs=168.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCCC-CCCCCCCCCCChh---
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDYP-WPDSVTTDFPDHN--- 77 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 77 (418)
+||+|||||++|+++|..|++.|++|+|||+. .+||.|.. +.|...+......+++.... +.........+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999999999999999995 49999876 56655544333332221110 0000001111222
Q ss_pred ----HHHHHH-----HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeE
Q 014821 78 ----QVLDYI-----QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (418)
Q Consensus 78 ----~~~~~l-----~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 148 (418)
++..++ ....+++++ .+.. .++..++ ..+|.+.++ ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv--~~~~-g~~~~~~--------------------------~~~v~v~~g----~~~ 126 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGV--DYLR-GRARFKD--------------------------PKTVKVDLG----REV 126 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCc--EEEE-EEEEEcc--------------------------CCEEEEcCC----eEE
Confidence 222222 223344455 3433 3333221 134655442 246
Q ss_pred EEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 149 i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
+.+|+||+|||+ .|..|+++ |.+.. .++++...... ...+++++|||+|.+|+|+|..|...+..
T Consensus 127 ~~~~~lIiATGs---~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvIIGgG~~g~E~A~~l~~~g~~ 191 (463)
T TIGR02053 127 RGAKRFLIATGA---RPAIPPIP---GLKEA--GYLTSEEALAL-------DRIPESLAVIGGGAIGVELAQAFARLGSE 191 (463)
T ss_pred EEeCEEEEcCCC---CCCCCCCC---CcccC--ceECchhhhCc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 899999999995 57777777 66543 23433332221 12358999999999999999999988765
Q ss_pred CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCC
Q 014821 229 ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGM 308 (418)
Q Consensus 229 ~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (418)
|+++.+.+. ++|... . .
T Consensus 192 ---Vtli~~~~~-~l~~~d-------~----~------------------------------------------------ 208 (463)
T TIGR02053 192 ---VTILQRSDR-LLPREE-------P----E------------------------------------------------ 208 (463)
T ss_pred ---EEEEEcCCc-CCCccC-------H----H------------------------------------------------
Confidence 999999875 333321 0 0
Q ss_pred CCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEc--CC-ceeeeccEEEEccCCCCCcch
Q 014821 309 VPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVD--GQ-TTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~--~g-~~~~~~D~Vi~atG~~~~~~~ 380 (418)
+...+.+.+++.+|+++.+. +..++.+ . +.++ ++ ++ +++|.||+|+|++|+...
T Consensus 209 -----------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 209 -----------------ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGE-VEADELLVATGRRPNTDG 270 (463)
T ss_pred -----------------HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEEeECCCcCCCC
Confidence 00111234455678888776 6666533 2 3333 23 45 999999999999999541
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 271 l~------l~~~g~~~~~~G~i~vd~~~~Ts~~~VyA 301 (463)
T TIGR02053 271 LG------LEKAGVKLDERGGILVDETLRTSNPGIYA 301 (463)
T ss_pred CC------ccccCCEECCCCcEeECCCccCCCCCEEE
Confidence 10 1111111 345678888777789999985
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=209.34 Aligned_cols=283 Identities=17% Similarity=0.226 Sum_probs=173.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC-CCCCCCCCC--CCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVT--TDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~--~~~~~~~ 77 (418)
.+||+|||||++|+++|..|++.|++++|||+. .+||+|.. +.|...+...+..++.. ..++..+.. ..-.+..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 589999999999999999999999999999995 79999886 44443332222211111 111100000 1112344
Q ss_pred HHHHHHHHHHHhcC-------c--ccc-eEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 78 QVLDYIQSYASHFD-------L--RKH-IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 78 ~~~~~l~~~~~~~~-------~--~~~-v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
.+..+.++....+. + ... -.+..++..++.+ .|.|++.++ ...
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~------------------------~~~V~~~~g---~~~ 137 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDER------------------------TLTVTLNDG---GEQ 137 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCC------------------------EEEEEecCC---CeE
Confidence 55544444332210 0 001 2223456666433 378877653 235
Q ss_pred EEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 014821 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~ 227 (418)
++.||+||+|||+ .|..|+++ |.+.. ..+++..... ....+++++|||+|.+|+|+|..|...+.
T Consensus 138 ~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~~~-------l~~~~~~vvViG~G~~G~E~A~~l~~~g~ 202 (468)
T PRK14694 138 TVHFDRAFIGTGA---RPAEPPVP---GLAET--PYLTSTSALE-------LDHIPERLLVIGASVVALELAQAFARLGS 202 (468)
T ss_pred EEECCEEEEeCCC---CCCCCCCC---CCCCC--ceEcchhhhc-------hhcCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 7999999999995 57777777 76542 2333322111 11346899999999999999999998876
Q ss_pred CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccC
Q 014821 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (418)
Q Consensus 228 ~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (418)
. |+++.+.. +++... . .
T Consensus 203 ~---Vtlv~~~~--~l~~~~-------~----~----------------------------------------------- 219 (468)
T PRK14694 203 R---VTVLARSR--VLSQED-------P----A----------------------------------------------- 219 (468)
T ss_pred e---EEEEECCC--CCCCCC-------H----H-----------------------------------------------
Confidence 5 99998742 333221 0 0
Q ss_pred CCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEEE-cCCceeeeccEEEEccCCCCCcchhcc
Q 014821 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVV-DGQTTPLKTDLVILATGFKGDVKLKNI 383 (418)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~~-~~g~~~~~~D~Vi~atG~~~~~~~~~~ 383 (418)
+.+.+.+.+++.+|+++.+. +..+..+ .+.+ .++.+ +++|.||+|+|.+|+..+..
T Consensus 220 ------------------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~~l~- 279 (468)
T PRK14694 220 ------------------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGT-LRAEQLLVATGRTPNTENLN- 279 (468)
T ss_pred ------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCE-EEeCEEEEccCCCCCcCCCC-
Confidence 01112334556678888775 6666532 2332 23446 99999999999999965432
Q ss_pred ccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 384 FLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+...++.+.++..+.++.||||.
T Consensus 280 -----l~~~g~~~~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 280 -----LESIGVETERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred -----chhcCcccCCCeEeeCCCcccCCCCEEE
Confidence 1112222345668888878778999985
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=221.82 Aligned_cols=267 Identities=18% Similarity=0.206 Sum_probs=175.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCCh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (418)
|.+++|||||+|++|+.+|..|+++ +++|+||++.+.+. |....+. . .+.. ...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~------Y~r~~L~--~---~~~~-----------~~~ 58 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA------YDRVHLS--S---YFSH-----------HTA 58 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc------ccCCcch--H---hHcC-----------CCH
Confidence 6677999999999999999999864 46899999987442 1111110 0 0100 011
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.++........++.++ .++.++.|+.++... ..|.+.++ .++.||+|||
T Consensus 59 ~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~~------------------------~~V~~~~G-----~~i~yD~LVI 107 (847)
T PRK14989 59 EELSLVREGFYEKHGI--KVLVGERAITINRQE------------------------KVIHSSAG-----RTVFYDKLIM 107 (847)
T ss_pred HHccCCCHHHHHhCCC--EEEcCCEEEEEeCCC------------------------cEEEECCC-----cEEECCEEEE
Confidence 2222223344456687 788888999998765 45666655 5799999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEE
Q 014821 157 CVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (418)
Q Consensus 157 AtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~ 236 (418)
|||+ .|.+|+++ |.+.. .++....+.+.. ........+++++|||+|.+|+|+|..|...+.. |+++.
T Consensus 108 ATGs---~p~~p~ip---G~~~~--~v~~~rt~~d~~-~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~---VtvVe 175 (847)
T PRK14989 108 ATGS---YPWIPPIK---GSETQ--DCFVYRTIEDLN-AIEACARRSKRGAVVGGGLLGLEAAGALKNLGVE---THVIE 175 (847)
T ss_pred CCCC---CcCCCCCC---CCCCC--CeEEECCHHHHH-HHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEe
Confidence 9995 57777777 65432 223211111111 0112234678999999999999999999998865 99999
Q ss_pred ecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccc
Q 014821 237 RTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQ 316 (418)
Q Consensus 237 r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (418)
+.+.++..... . .
T Consensus 176 ~~~~ll~~~ld-------~----~-------------------------------------------------------- 188 (847)
T PRK14989 176 FAPMLMAEQLD-------Q----M-------------------------------------------------------- 188 (847)
T ss_pred ccccchhhhcC-------H----H--------------------------------------------------------
Confidence 87753221111 0 0
Q ss_pred ccccccccccCcchhhhhccCcEEEeccC-ceeEecC------cEEEcCCceeeeccEEEEccCCCCCcchhccccchhh
Q 014821 317 ELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED------GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (418)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~------~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~ 389 (418)
....+.+.+++.+|+++.+. +..+..+ .+.+++|++ +++|.||+|+|++|+..+++..+...
T Consensus 189 ---------~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~-i~~D~Vv~A~G~rPn~~L~~~~Gl~~- 257 (847)
T PRK14989 189 ---------GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIVFSTGIRPQDKLATQCGLAV- 257 (847)
T ss_pred ---------HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCE-EEcCEEEECCCcccCchHHhhcCccC-
Confidence 01112335566678888886 6666532 367889998 99999999999999965443322221
Q ss_pred hhhhcCCCCCCccceeeeeeccCcccc
Q 014821 390 QDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+..+.+.++..+.++.|+||.
T Consensus 258 ------~~~G~I~VD~~l~Ts~p~IYA 278 (847)
T PRK14989 258 ------APRGGIVINDSCQTSDPDIYA 278 (847)
T ss_pred ------CCCCcEEECCCCcCCCCCEEE
Confidence 345778898888888999985
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=207.57 Aligned_cols=279 Identities=17% Similarity=0.166 Sum_probs=164.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc----cCCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (418)
.++||+|||||++|+.+|..|++.|.+|+|+|+.+.+||.|.. ++|...+...+..++ ...+.+.. .....+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~--~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF--GEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc--CCCCcC
Confidence 3899999999999999999999999999999997789998766 666654432222111 11111110 011122
Q ss_pred hhHHHHHHHHH-----------HHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVLDYIQSY-----------ASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~~~l~~~-----------~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+.++.+.. .+..++ .+.. ..+..++. +...|...+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~-g~a~~~~~------------------------~~v~v~~~~---g 130 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVN-GLGKFTGG------------------------NTLEVTGED---G 130 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccC------------------------CEEEEecCC---C
Confidence 23443333222 233344 3333 33433322 223343322 3
Q ss_pred ceeEEEeCEEEEeeccCCCCCC-CCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPN-IPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~-~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
...++.||+||+|||+. |. +|.++ +.. ..++.+.+.... ...+++++|||+|.+|+|+|..|.
T Consensus 131 ~~~~~~~d~lViATGs~---p~~~p~~~---~~~---~~v~~~~~~~~~-------~~~~~~vvIiGgG~iG~E~A~~l~ 194 (471)
T PRK06467 131 KTTVIEFDNAIIAAGSR---PIQLPFIP---HDD---PRIWDSTDALEL-------KEVPKRLLVMGGGIIGLEMGTVYH 194 (471)
T ss_pred ceEEEEcCEEEEeCCCC---CCCCCCCC---CCC---CcEEChHHhhcc-------ccCCCeEEEECCCHHHHHHHHHHH
Confidence 33579999999999954 54 34343 321 123333322221 134689999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+.+. ++|... . .+
T Consensus 195 ~~G~~---Vtlv~~~~~-il~~~d-------~----~~------------------------------------------ 217 (471)
T PRK06467 195 RLGSE---VDVVEMFDQ-VIPAAD-------K----DI------------------------------------------ 217 (471)
T ss_pred HcCCC---EEEEecCCC-CCCcCC-------H----HH------------------------------------------
Confidence 88765 999999875 334322 0 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcC--C--ceeeeccEEEEccCC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDG--Q--TTPLKTDLVILATGF 374 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~--g--~~~~~~D~Vi~atG~ 374 (418)
...+.+.+++. ++++.+. +..++ +++ +.+++ | ++ +++|.||+|+|+
T Consensus 218 -----------------------~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~ 272 (471)
T PRK06467 218 -----------------------VKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEP-QRYDAVLVAVGR 272 (471)
T ss_pred -----------------------HHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceE-EEeCEEEEeecc
Confidence 00112233333 6666665 55554 233 33333 2 34 999999999999
Q ss_pred CCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+..+... ....+. +.++.+.++..+.++.|+||.
T Consensus 273 ~pn~~~l~~------~~~gl~~~~~G~I~Vd~~~~t~~p~VyA 309 (471)
T PRK06467 273 VPNGKLLDA------EKAGVEVDERGFIRVDKQCRTNVPHIFA 309 (471)
T ss_pred cccCCccCh------hhcCceECCCCcEeeCCCcccCCCCEEE
Confidence 999543211 111111 345678888777779999985
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=206.04 Aligned_cols=270 Identities=16% Similarity=0.175 Sum_probs=166.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|||||||++|+++|..|++.+ .+|+|||+++.++ |.. . ..++. ....+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~--~--------------~~~~~--~~~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA--C--------------GLPYF--VGGFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec--C--------------CCceE--eccccCCHHHhhc
Confidence 37999999999999999999875 4899999987442 100 0 00000 0111122233444
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+..+...++++ +++++++|++++... ..|.+.+..++....+.||+||+|||+
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~~~~~~~~~~~~yd~lviAtG~- 113 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDAKN------------------------KTITVKNLKTGSIFNDTYDKLMIATGA- 113 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEECCC------------------------CEEEEEECCCCCEEEecCCEEEECCCC-
Confidence 44455566787 788889999998765 245554422232333459999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhh--hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAA--NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|.++ |.+. ..+++...+.+.. .... ....+++|+|||+|.+|+|+|..|...+.. |+++.+.+
T Consensus 114 --~~~~~~i~---g~~~--~~v~~~~~~~~~~-~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~---Vtli~~~~ 182 (444)
T PRK09564 114 --RPIIPPIK---NINL--ENVYTLKSMEDGL-ALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKN---VRIIQLED 182 (444)
T ss_pred --CCCCCCCC---CcCC--CCEEEECCHHHHH-HHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCc---EEEEeCCc
Confidence 46667666 5532 1244433322111 0001 123578999999999999999999887754 99998877
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
..+..... ..+
T Consensus 183 ~~l~~~~~-----------~~~---------------------------------------------------------- 193 (444)
T PRK09564 183 RILPDSFD-----------KEI---------------------------------------------------------- 193 (444)
T ss_pred ccCchhcC-----------HHH----------------------------------------------------------
Confidence 42211111 000
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEecCc---EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG 395 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~---v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~ 395 (418)
.+.+.+.+++.+|+++.+. +.++..++ ....++.+ +++|.||+|+|+.++.++ +....+.
T Consensus 194 -------~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~d~vi~a~G~~p~~~~--------l~~~gl~ 257 (444)
T PRK09564 194 -------TDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE-YEADVVIVATGVKPNTEF--------LEDTGLK 257 (444)
T ss_pred -------HHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCE-EEcCEEEECcCCCcCHHH--------HHhcCcc
Confidence 0111234455567777765 66665432 22234556 999999999999998543 3333332
Q ss_pred -CCCCCccceeeeeeccCcccc
Q 014821 396 -SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 396 -~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.++.+.++..+.++.||||.
T Consensus 258 ~~~~g~i~vd~~~~t~~~~IyA 279 (444)
T PRK09564 258 TLKNGAIIVDEYGETSIENIYA 279 (444)
T ss_pred ccCCCCEEECCCcccCCCCEEE
Confidence 345678888777778999985
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=201.72 Aligned_cols=266 Identities=14% Similarity=0.140 Sum_probs=165.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|..++|||||||+||+++|..|++.+. +|+|+++.+... +..+. .+. .+...+.. ...+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~----l~~---~~~~~~~~---~~~~~~~-- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPP----LSK---SMLLEDSP---QLQQVLP-- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCC----CCH---HHHCCCCc---cccccCC--
Confidence 788899999999999999999999876 799999975331 00000 000 00000000 0000000
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
.+...+.++ .+..++.|..++... ..|.+.++ .++.||+||+||
T Consensus 65 -----~~~~~~~~i--~~~~g~~V~~id~~~------------------------~~v~~~~g-----~~~~yd~LViAT 108 (396)
T PRK09754 65 -----ANWWQENNV--HLHSGVTIKTLGRDT------------------------RELVLTNG-----ESWHWDQLFIAT 108 (396)
T ss_pred -----HHHHHHCCC--EEEcCCEEEEEECCC------------------------CEEEECCC-----CEEEcCEEEEcc
Confidence 112234577 778888899998765 45666655 479999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+. |..++++ +.. ...++......+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+.
T Consensus 109 Gs~---~~~~p~~---~~~--~~~v~~~~~~~da~-~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~ 176 (396)
T PRK09754 109 GAA---ARPLPLL---DAL--GERCFTLRHAGDAA-RLREVLQPERSVVIVGAGTIGLELAASATQRRCK---VTVIELA 176 (396)
T ss_pred CCC---CCCCCCC---CcC--CCCEEecCCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecC
Confidence 965 5555444 321 11232211111100 0112334578999999999999999999988765 9999987
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+..+ ++.. + ..
T Consensus 177 ~~~l-~~~~------~----~~---------------------------------------------------------- 187 (396)
T PRK09754 177 ATVM-GRNA------P----PP---------------------------------------------------------- 187 (396)
T ss_pred Ccch-hhhc------C----HH----------------------------------------------------------
Confidence 7532 2110 0 00
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecC---cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~ 394 (418)
..+.+.+.+++.+|+++.+. +..++.+ .+.+.+|++ +++|.||+|+|..++..+.+. ..+
T Consensus 188 -------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~-i~aD~Vv~a~G~~pn~~l~~~--------~gl 251 (396)
T PRK09754 188 -------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGET-LQADVVIYGIGISANDQLARE--------ANL 251 (396)
T ss_pred -------HHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCE-EECCEEEECCCCChhhHHHHh--------cCC
Confidence 00112234455678888775 6676643 256788988 999999999999999544332 222
Q ss_pred CCCCCCccceeeeeeccCcccc
Q 014821 395 GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. ++++.++..+.++.||||.
T Consensus 252 ~~-~~gi~vd~~~~ts~~~IyA 272 (396)
T PRK09754 252 DT-ANGIVIDEACRTCDPAIFA 272 (396)
T ss_pred Cc-CCCEEECCCCccCCCCEEE
Confidence 12 3557787777778999985
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=211.06 Aligned_cols=281 Identities=15% Similarity=0.212 Sum_probs=169.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC-CCCCCCCCC--CCCCCh
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVT--TDFPDH 76 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~--~~~~~~ 76 (418)
.++||+|||||++|+++|..|+++|++|+|||++ .+||.|.+ +.|...+..+....... ..++..+.. ......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999996 89999977 56655543333221111 111100100 111223
Q ss_pred hHHHHHHHHHHHh------------c-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 77 NQVLDYIQSYASH------------F-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 77 ~~~~~~l~~~~~~------------~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
..+.++.+....+ + ++ .+ +..++..++. +.+.|...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~~~~~~~------------------------~~~~v~~~~--- 225 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAI--TV-LHGEARFKDD------------------------QTLIVRLND--- 225 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCe--EE-EEEEEEEecC------------------------CEEEEEeCC---
Confidence 3444333322221 1 22 12 2234443332 235555433
Q ss_pred CceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 144 HSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
+...++.||+||+|||+ .|.+|+++ |.+.. ..+++.... .....+++++|||+|.+|+|+|..|.
T Consensus 226 g~~~~~~~d~lviAtGs---~p~~p~i~---g~~~~--~~~~~~~~~-------~~~~~~~~vvViGgG~ig~E~A~~l~ 290 (561)
T PRK13748 226 GGERVVAFDRCLIATGA---SPAVPPIP---GLKET--PYWTSTEAL-------VSDTIPERLAVIGSSVVALELAQAFA 290 (561)
T ss_pred CceEEEEcCEEEEcCCC---CCCCCCCC---CCCcc--ceEccHHHh-------hcccCCCeEEEECCCHHHHHHHHHHH
Confidence 22357999999999995 57778777 65432 122211111 11234689999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.|+. +++... . .
T Consensus 291 ~~g~~---Vtli~~~~--~l~~~d-------~----~------------------------------------------- 311 (561)
T PRK13748 291 RLGSK---VTILARST--LFFRED-------P----A------------------------------------------- 311 (561)
T ss_pred HcCCE---EEEEecCc--cccccC-------H----H-------------------------------------------
Confidence 88765 99999853 233221 0 0
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--CcEEEc-CCceeeeccEEEEccCCCCCcc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGIVVD-GQTTPLKTDLVILATGFKGDVK 379 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~v~~~-~g~~~~~~D~Vi~atG~~~~~~ 379 (418)
+...+.+.+++.+|+++.+. +..++. +.+.+. ++.+ +++|.||+|+|++|+..
T Consensus 312 ----------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 312 ----------------------IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE-LRADKLLVATGRAPNTR 368 (561)
T ss_pred ----------------------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCe-EEeCEEEEccCCCcCCC
Confidence 01112234556678888775 666643 233322 2335 99999999999999954
Q ss_pred hhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 380 LKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 380 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.. +....+. +.++.+.++..+.++.||||.
T Consensus 369 ~l~------l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA 400 (561)
T PRK13748 369 SLA------LDAAGVTVNAQGAIVIDQGMRTSVPHIYA 400 (561)
T ss_pred CcC------chhcCceECCCCCEeECCCcccCCCCEEE
Confidence 321 1111221 345678888888889999995
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-23 Score=207.81 Aligned_cols=283 Identities=17% Similarity=0.207 Sum_probs=168.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc----cCCCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFP 74 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~ 74 (418)
|+++||+|||||++|+++|..|++.|.+++|||+ ..+||.|.. +.|...+......++ +..+.+.. .....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~--~~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA--DGPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc--CCCcc
Confidence 8889999999999999999999999999999999 689999876 445433322222111 11121111 11334
Q ss_pred ChhHHHHHHHHHHHhcCcccce-E---eeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHI-K---FNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v-~---~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
+..++.++++...+++.. .+ . ....+.-+.... . + .+.+.+.+ ++ .++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~----~-------------~--~~~~~v~v-~~-----~~~~ 130 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTA----R-------------F--VDPNTVEV-NG-----ERIE 130 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEE----E-------------E--ccCCEEEE-Cc-----EEEE
Confidence 566777777766654422 11 0 001111111100 0 0 01123444 33 5799
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCCCCCCCc-eEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLE 229 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~ 229 (418)
||+||+|||+. .|.+| |.+...+ .++++..... ....+++++|||+|.+|+|+|..|...+..
T Consensus 131 ~d~lIiATGs~--~p~ip------g~~~~~~~~~~~~~~~~~-------~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~- 194 (460)
T PRK06292 131 AKNIVIATGSR--VPPIP------GVWLILGDRLLTSDDAFE-------LDKLPKSLAVIGGGVIGLELGQALSRLGVK- 194 (460)
T ss_pred eCEEEEeCCCC--CCCCC------CCcccCCCcEECchHHhC-------ccccCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 99999999954 35554 4322111 2333222211 124578999999999999999999988765
Q ss_pred CCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 014821 230 NPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMV 309 (418)
Q Consensus 230 ~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (418)
|+++.|.+. +++... . .+
T Consensus 195 --Vtli~~~~~-~l~~~d-------~----~~------------------------------------------------ 212 (460)
T PRK06292 195 --VTVFERGDR-ILPLED-------P----EV------------------------------------------------ 212 (460)
T ss_pred --EEEEecCCC-cCcchh-------H----HH------------------------------------------------
Confidence 999998875 333211 0 00
Q ss_pred CCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC---cEEE--cCC--ceeeeccEEEEccCCCCCcchh
Q 014821 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GIVV--DGQ--TTPLKTDLVILATGFKGDVKLK 381 (418)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---~v~~--~~g--~~~~~~D~Vi~atG~~~~~~~~ 381 (418)
.+.+.+.+++. |+++.+. +..++.+ .+.+ .++ ++ +++|.||+|+|.+|+.+.+
T Consensus 213 -----------------~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l 273 (460)
T PRK06292 213 -----------------SKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTET-IEADYVLVATGRRPNTDGL 273 (460)
T ss_pred -----------------HHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEE-EEeCEEEEccCCccCCCCC
Confidence 01112344555 7777665 6666532 3443 233 45 9999999999999995422
Q ss_pred ccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 382 NIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 382 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
. +....+. +.++.+.++..+.++.||||.
T Consensus 274 ~------l~~~g~~~~~~g~i~vd~~~~ts~~~IyA 303 (460)
T PRK06292 274 G------LENTGIELDERGRPVVDEHTQTSVPGIYA 303 (460)
T ss_pred C------cHhhCCEecCCCcEeECCCcccCCCCEEE
Confidence 1 1111111 345678888888778999985
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=206.04 Aligned_cols=288 Identities=16% Similarity=0.199 Sum_probs=164.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc-----CCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF-----SDYPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~ 73 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+ ..+||.+.. +.|+..+......+.. ..+.... ...
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~---~~~ 77 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG---EVT 77 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc---Ccc
Confidence 4578999999999999999999999999999999 478998776 5554333222111111 0111110 111
Q ss_pred CChhHHHHHHHHHHHhc--CcccceEe-eeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 74 PDHNQVLDYIQSYASHF--DLRKHIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~--~~~~~v~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
.+...+..+.+...++. +. ...+ ...|..++... .+...+.+.|...+ +...++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~~-----------------~~~~~~~v~v~~~~---g~~~~~~ 135 (466)
T PRK07818 78 FDYGAAFDRSRKVAEGRVKGV--HFLMKKNKITEIHGYG-----------------TFTDANTLEVDLND---GGTETVT 135 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHH--HHHHHhCCCEEEEEEE-----------------EEcCCCEEEEEecC---CCeeEEE
Confidence 22233333332222211 11 1111 11333333211 00001223343322 2335799
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~ 230 (418)
||+||+|||+. |..| | |.+. .+.++....... ....+++|+|||+|.+|+|+|..|...+..
T Consensus 136 ~d~lViATGs~---p~~~--p---g~~~-~~~v~~~~~~~~-------~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~-- 197 (466)
T PRK07818 136 FDNAIIATGSS---TRLL--P---GTSL-SENVVTYEEQIL-------SRELPKSIVIAGAGAIGMEFAYVLKNYGVD-- 197 (466)
T ss_pred cCEEEEeCCCC---CCCC--C---CCCC-CCcEEchHHHhc-------cccCCCeEEEECCcHHHHHHHHHHHHcCCe--
Confidence 99999999965 5443 3 4321 122333221111 123468999999999999999999988765
Q ss_pred CeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 014821 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (418)
Q Consensus 231 ~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (418)
|+++.+.++ ++|... . .
T Consensus 198 -Vtlv~~~~~-~l~~~d-------~----~-------------------------------------------------- 214 (466)
T PRK07818 198 -VTIVEFLDR-ALPNED-------A----E-------------------------------------------------- 214 (466)
T ss_pred -EEEEecCCC-cCCccC-------H----H--------------------------------------------------
Confidence 999998775 334322 0 0
Q ss_pred CcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc----EEEc--CCc-eeeeccEEEEccCCCCCcchhc
Q 014821 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVD--GQT-TPLKTDLVILATGFKGDVKLKN 382 (418)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~----v~~~--~g~-~~~~~D~Vi~atG~~~~~~~~~ 382 (418)
+.+.+.+.+++.+|+++.+. +..++.++ +.+. +|+ ..+++|.||+|+|++|+.....
T Consensus 215 ---------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~ 279 (466)
T PRK07818 215 ---------------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYG 279 (466)
T ss_pred ---------------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCC
Confidence 01112335566678888876 77775432 3443 564 2399999999999999954221
Q ss_pred cccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 383 IFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+. +.++.+.++..+.++.||||.
T Consensus 280 ------l~~~g~~~~~~g~i~vd~~~~Ts~p~IyA 308 (466)
T PRK07818 280 ------LEKTGVALTDRGAIAIDDYMRTNVPHIYA 308 (466)
T ss_pred ------chhcCcEECCCCcEeeCCCcccCCCCEEE
Confidence 1111121 345668888878788999985
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-23 Score=206.07 Aligned_cols=291 Identities=14% Similarity=0.143 Sum_probs=172.4
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCC-CCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDS-VTTD 72 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~-~~~~ 72 (418)
|+ .+||+|||||++|+++|..|++.|.+|+|+|+. .+||.|.. +.|...+...+..+... .+.+... ....
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 65 799999999999999999999999999999995 79999877 56665544333322211 1111100 0011
Q ss_pred CC----ChhHHHHHHH----HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 73 FP----DHNQVLDYIQ----SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 73 ~~----~~~~~~~~l~----~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
|. ..+++.+++. ...++.++ ++.. ..+..++.+..++ ..+.+.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~-g~a~~i~~~~~~~-----------------~~~~~~v~~~~g--- 136 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKI--DVFH-GIGRILGPSIFSP-----------------MPGTVSVETETG--- 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEeCCCCCcC-----------------CceEEEEEeCCC---
Confidence 11 1122222232 23334455 4444 5666666541000 012355554332
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
...++.||+||+|||+. |..++ +.+.....++++.+.... ...+++|+|||+|.+|+|+|..|..
T Consensus 137 ~~~~~~~d~lViATGs~---p~~~p-----~~~~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~~G~E~A~~l~~ 201 (472)
T PRK05976 137 ENEMIIPENLLIATGSR---PVELP-----GLPFDGEYVISSDEALSL-------ETLPKSLVIVGGGVIGLEWASMLAD 201 (472)
T ss_pred ceEEEEcCEEEEeCCCC---CCCCC-----CCCCCCceEEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHH
Confidence 23579999999999964 54332 221111123433322221 1236899999999999999999998
Q ss_pred hcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhc
Q 014821 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (418)
Q Consensus 225 ~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
.+.. |+++.|.+. ++|... . .
T Consensus 202 ~g~~---Vtli~~~~~-il~~~~-------~----~-------------------------------------------- 222 (472)
T PRK05976 202 FGVE---VTVVEAADR-ILPTED-------A----E-------------------------------------------- 222 (472)
T ss_pred cCCe---EEEEEecCc-cCCcCC-------H----H--------------------------------------------
Confidence 8765 999999875 344322 0 0
Q ss_pred ccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe---cCcE---EEcCCc-eeeeccEEEEccCCCC
Q 014821 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC---EDGI---VVDGQT-TPLKTDLVILATGFKG 376 (418)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~---~~~v---~~~~g~-~~~~~D~Vi~atG~~~ 376 (418)
+...+.+.+++.+|+++.+. +..++ ++++ .+.+|+ +.+++|.||+|+|.+|
T Consensus 223 ---------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 223 ---------------------LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred ---------------------HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 01112234556678888876 66665 3433 234664 2389999999999999
Q ss_pred CcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 377 DVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+..... +....+...++.+.++..+.++.|+||.
T Consensus 282 ~~~~l~------l~~~~~~~~~g~i~Vd~~l~ts~~~IyA 315 (472)
T PRK05976 282 NTEGIG------LENTDIDVEGGFIQIDDFCQTKERHIYA 315 (472)
T ss_pred CCCCCC------chhcCceecCCEEEECCCcccCCCCEEE
Confidence 854221 1111121235667777777777889885
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-23 Score=205.55 Aligned_cols=280 Identities=18% Similarity=0.210 Sum_probs=166.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC-CCCCCCCCCCCCC--Chh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVTTDFP--DHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~--~~~ 77 (418)
++||+|||+|++|+++|..|+++|.+++++|+.+.+||.|.. +.|...+..++..++.. ..++. +.....+ +..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~-g~~~~~~~~~~~ 94 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFD-GVEAVAPSIDRG 94 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcccc-CcccCCCccCHH
Confidence 589999999999999999999999999999998789999988 56665554443332211 11111 0000111 222
Q ss_pred HHHHHHHHHHHhc-------------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 78 QVLDYIQSYASHF-------------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 78 ~~~~~l~~~~~~~-------------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
.+..+......+. ++ .+.. ..+.-++ .+.+.|...++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~-G~a~f~~------------------------~~~v~v~~~~g--- 144 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPAL--TLLK-GYARFKD------------------------GNTLVVRLHDG--- 144 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCe--EEEE-EEEEEec------------------------CCEEEEEeCCC---
Confidence 3322222221111 11 1111 2222221 23355554332
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
...++.||+||||||+ .|..|+++ |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..|..
T Consensus 145 ~~~~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~l~-------~~~~~k~vvVIGgG~iG~E~A~~l~~ 209 (479)
T PRK14727 145 GERVLAADRCLIATGS---TPTIPPIP---GLMDT--PYWTSTEALF-------SDELPASLTVIGSSVVAAEIAQAYAR 209 (479)
T ss_pred ceEEEEeCEEEEecCC---CCCCCCCC---CcCcc--ceecchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHH
Confidence 3357999999999995 57778777 65432 1222111111 12346899999999999999999988
Q ss_pred hcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhc
Q 014821 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (418)
Q Consensus 225 ~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
.+.. |+++.+.. +++... . .
T Consensus 210 ~G~~---Vtlv~~~~--~l~~~d-------~----~-------------------------------------------- 229 (479)
T PRK14727 210 LGSR---VTILARST--LLFRED-------P----L-------------------------------------------- 229 (479)
T ss_pred cCCE---EEEEEcCC--CCCcch-------H----H--------------------------------------------
Confidence 8765 99998753 333221 0 0
Q ss_pred ccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCcEEEc-CCceeeeccEEEEccCCCCCcch
Q 014821 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDGIVVD-GQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~v~~~-~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
+.+.+.+.+++.+|+++.+. +..++ ++++.+. ++.+ +++|.||+|+|+.|+..+
T Consensus 230 ---------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~-i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 230 ---------------------LGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGRHANTHD 287 (479)
T ss_pred ---------------------HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCe-EEeCEEEEccCCCCCccC
Confidence 00112234455667777765 65554 2333332 2335 899999999999999542
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+. +....+. +.++.+.++..+.++.|+||.
T Consensus 288 l~------l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA 318 (479)
T PRK14727 288 LN------LEAVGVTTDTSGAIVVNPAMETSAPDIYA 318 (479)
T ss_pred CC------chhhCceecCCCCEEECCCeecCCCCEEE
Confidence 21 1111121 345778888888889999995
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=209.14 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=168.5
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--------CCCccccc--cCCcceecCCcccccc-----CCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF-----SDYP 64 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--------~~gg~~~~--~~~~~~l~~~~~~~~~-----~~~~ 64 (418)
|+ .+||+|||||++|+.+|..|+++|.+|+|+|+.. .+||.+.. ++|...+...+..+.. ..+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 44 5899999999999999999999999999999631 37887655 6665433322221111 0111
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
+.. .. -.+..++.++++..+++++. .+....++..|+... +.. .+ .+.++|.+.+. +
T Consensus 82 ~~~--~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~--g~a------------~~--~~~~~v~v~~~--~ 138 (499)
T PTZ00052 82 WKT--SS-SFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYIN--GLA------------KL--KDEHTVSYGDN--S 138 (499)
T ss_pred CCC--CC-CcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEE--EEE------------EE--ccCCEEEEeeC--C
Confidence 111 01 23456777777777666543 232222222221110 000 00 01234555432 2
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCC-CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
....+.||+||||||+. |..|. ++ |.+.+ .+.+..... ....+++++|||+|.+|+|+|..|.
T Consensus 139 ~~~~i~~d~lIIATGs~---p~~p~~i~---G~~~~---~~~~~~~~~-------~~~~~~~vvIIGgG~iG~E~A~~l~ 202 (499)
T PTZ00052 139 QEETITAKYILIATGGR---PSIPEDVP---GAKEY---SITSDDIFS-------LSKDPGKTLIVGASYIGLETAGFLN 202 (499)
T ss_pred CceEEECCEEEEecCCC---CCCCCCCC---Cccce---eecHHHHhh-------hhcCCCeEEEECCCHHHHHHHHHHH
Confidence 23579999999999954 66663 66 65432 222222211 1234679999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.++. +++... . .
T Consensus 203 ~~G~~---Vtli~~~~--~l~~~d-------~----~------------------------------------------- 223 (499)
T PTZ00052 203 ELGFD---VTVAVRSI--PLRGFD-------R----Q------------------------------------------- 223 (499)
T ss_pred HcCCc---EEEEEcCc--ccccCC-------H----H-------------------------------------------
Confidence 88765 99998742 233222 0 0
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C--cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~--~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+.+.+++.+|+++.+. +..+.. + .+.+.+|++ +++|.||+|+|++|+.
T Consensus 224 ----------------------~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 224 ----------------------CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTT-ELFDTVLYATGRKPDI 280 (499)
T ss_pred ----------------------HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCE-EEcCEEEEeeCCCCCc
Confidence 01112334555668888775 555542 2 256678888 9999999999999996
Q ss_pred chhc--cccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 379 KLKN--IFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+++. .++..+ +.++.+.+... .++.|+||.
T Consensus 281 ~~l~l~~~g~~~-------~~~G~ii~~~~-~Ts~p~IyA 312 (499)
T PTZ00052 281 KGLNLNAIGVHV-------NKSNKIIAPND-CTNIPNIFA 312 (499)
T ss_pred cccCchhcCcEE-------CCCCCEeeCCC-cCCCCCEEE
Confidence 5432 111111 23344333333 677888884
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=204.29 Aligned_cols=281 Identities=16% Similarity=0.184 Sum_probs=162.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc------CCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF------SDYPWPDSVTTD 72 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~------~~~~~~~~~~~~ 72 (418)
|+++||+||||||+|+++|..++++|.+|+|+|+++.+||.+.. +.|+..+......++. ..+.... ..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~--~~- 77 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV--KP- 77 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc--cC-
Confidence 78899999999999999999999999999999987789998765 6666554433332211 1111100 00
Q ss_pred CCChhHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 73 FPDHNQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 73 ~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
-.....+..+... ..+..++ .+.. ..+ .+. . .....|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~a-~~~--~---------------------~~~v~v~~~~- 129 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIK-GWG-RLD--G---------------------VGKVVVKAED- 129 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEE-EEc--c---------------------CCEEEEEcCC-
Confidence 0111222222111 1122223 2222 121 111 1 1223443322
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
+...++.||+||||||+. |. .++ |.+.....++++..... ....+++|+|||+|.+|+|+|..
T Consensus 130 --g~~~~~~~d~lVIATGs~---p~--~ip---g~~~~~~~~~~~~~~~~-------~~~~~~~vvIIGgG~ig~E~A~~ 192 (466)
T PRK06115 130 --GSETQLEAKDIVIATGSE---PT--PLP---GVTIDNQRIIDSTGALS-------LPEVPKHLVVIGAGVIGLELGSV 192 (466)
T ss_pred --CceEEEEeCEEEEeCCCC---CC--CCC---CCCCCCCeEECHHHHhC-------CccCCCeEEEECCCHHHHHHHHH
Confidence 233579999999999965 42 233 43211112343332222 12347899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
+...+.. |+++.+.++ ++|... . .
T Consensus 193 l~~~G~~---Vtlie~~~~-il~~~d-------~----~----------------------------------------- 216 (466)
T PRK06115 193 WRRLGAQ---VTVVEYLDR-ICPGTD-------T----E----------------------------------------- 216 (466)
T ss_pred HHHcCCe---EEEEeCCCC-CCCCCC-------H----H-----------------------------------------
Confidence 9888765 999998774 333221 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--CcE--EEc---CC--ceeeeccEEEEc
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGI--VVD---GQ--TTPLKTDLVILA 371 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~v--~~~---~g--~~~~~~D~Vi~a 371 (418)
+.+.+.+.+++.+|+++.+. +..++. +++ .+. +| ++ +++|.||+|
T Consensus 217 ------------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~a 271 (466)
T PRK06115 217 ------------------------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET-LQADYVLVA 271 (466)
T ss_pred ------------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE-EEeCEEEEc
Confidence 00112234556678888875 667753 233 332 23 45 999999999
Q ss_pred cCCCCCcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|++|+.+.+. +....+......+.++..+.++.|+||.
T Consensus 272 ~G~~pn~~~l~------~~~~g~~~~~~G~~vd~~~~Ts~~~IyA 310 (466)
T PRK06115 272 IGRRPYTQGLG------LETVGLETDKRGMLANDHHRTSVPGVWV 310 (466)
T ss_pred cCCccccccCC------cccccceeCCCCEEECCCeecCCCCEEE
Confidence 99999954221 1111111222235566667889999985
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=209.95 Aligned_cols=274 Identities=17% Similarity=0.211 Sum_probs=167.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC---------CCCCccccc--cCCcceecCCcccccc----CCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR---------SDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPD 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~---------~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~ 67 (418)
.+||+|||+|++|+.+|..+++.|.+|.|+|+. ..+||++.. +.|...+...+...+. ..+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999962 457887776 6666665443332221 1111111
Q ss_pred CCCCCCCChhHHH-----------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 68 SVTTDFPDHNQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 68 ~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
. ...-.+...+. .++....++.++ +++. .++..++.+ +|
T Consensus 159 ~-~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~~--------------------------~V 208 (558)
T PLN02546 159 E-TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDPH--------------------------TV 208 (558)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccCC--------------------------EE
Confidence 0 00011222222 233333333444 3332 344444322 24
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
.+ ++ ..+.||+||||||+ .|..|+++ |.+. ++++..... ....+++|+|||+|.+|+
T Consensus 209 ~v-~G-----~~~~~D~LVIATGs---~p~~P~Ip---G~~~----v~~~~~~l~-------~~~~~k~V~VIGgG~iGv 265 (558)
T PLN02546 209 DV-DG-----KLYTARNILIAVGG---RPFIPDIP---GIEH----AIDSDAALD-------LPSKPEKIAIVGGGYIAL 265 (558)
T ss_pred EE-CC-----EEEECCEEEEeCCC---CCCCCCCC---Chhh----ccCHHHHHh-------ccccCCeEEEECCCHHHH
Confidence 44 23 47999999999994 57777777 6542 222211111 223578999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHH
Q 014821 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (418)
Q Consensus 217 e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (418)
|+|..|...+.. |+++.+.+. +++... ..+
T Consensus 266 E~A~~L~~~g~~---Vtlv~~~~~-il~~~d-----------~~~----------------------------------- 295 (558)
T PLN02546 266 EFAGIFNGLKSD---VHVFIRQKK-VLRGFD-----------EEV----------------------------------- 295 (558)
T ss_pred HHHHHHHhcCCe---EEEEEeccc-cccccC-----------HHH-----------------------------------
Confidence 999999887765 999998774 333221 000
Q ss_pred HHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec---CcEE--EcCCceeeeccEEEE
Q 014821 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE---DGIV--VDGQTTPLKTDLVIL 370 (418)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~---~~v~--~~~g~~~~~~D~Vi~ 370 (418)
.+.+.+.+++.+|+++.+. +..+.. +.+. +++++. ..+|.||+
T Consensus 296 ------------------------------~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~-~~~D~Viv 344 (558)
T PLN02546 296 ------------------------------RDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTV-EGFSHVMF 344 (558)
T ss_pred ------------------------------HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEE-EecCEEEE
Confidence 0111234556678888776 666642 2233 344444 56899999
Q ss_pred ccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 371 ATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 371 atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+|++++..++. ++...+. +.++.+.++..+.+++||||.
T Consensus 345 a~G~~Pnt~~L~------le~~gl~~d~~G~I~VD~~l~Ts~p~IYA 385 (558)
T PLN02546 345 ATGRKPNTKNLG------LEEVGVKMDKNGAIEVDEYSRTSVPSIWA 385 (558)
T ss_pred eeccccCCCcCC------hhhcCCcCCCCCcEeECCCceeCCCCEEE
Confidence 999999954211 2222222 345678888878889999995
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=203.63 Aligned_cols=285 Identities=15% Similarity=0.168 Sum_probs=171.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeC--------CCCCccccc--cCCcceecCCccccccC----CCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEAR--------SDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWP 66 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~--------~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~ 66 (418)
+.+||+|||||++|..+|..+++. |.+|.|||+. ..+||.+.. +.|...+...+..++.. .+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 469999999999999999999996 8999999974 468998777 77776665544332211 11111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhc------------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 67 DSVTTDFPDHNQVLDYIQSYASHF------------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
......-.....+.++.+...++. ++ ++.. .+...++ ..
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv--~~i~-G~a~f~~--------------------------~~ 132 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGL--TFFL-GWGALED--------------------------KN 132 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCe--EEEE-EEEEEcc--------------------------CC
Confidence 000010112233333333222221 22 1221 2222211 13
Q ss_pred EEEEecCC---CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcC
Q 014821 135 TVAVEDAK---NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGL 211 (418)
Q Consensus 135 ~v~~~~~~---~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 211 (418)
+|.+.... ++..+++.||+||+|||+ .|..|+++ |.+. ++.+.+... ....+++++|||+
T Consensus 133 ~v~V~~~~~~~~~~~~~~~~d~lIIATGs---~p~~p~i~---G~~~----~~~~~~~~~-------~~~~~~~vvIIGg 195 (486)
T TIGR01423 133 VVLVRESADPKSAVKERLQAEHILLATGS---WPQMLGIP---GIEH----CISSNEAFY-------LDEPPRRVLTVGG 195 (486)
T ss_pred EEEEeeccCCCCCcceEEECCEEEEecCC---CCCCCCCC---Chhh----eechhhhhc-------cccCCCeEEEECC
Confidence 45554321 112358999999999995 57777777 6542 222221111 1134689999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHH
Q 014821 212 QKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISK 291 (418)
Q Consensus 212 G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (418)
|.+|+|+|..+........+|+++.+.+. ++|... . .
T Consensus 196 G~iG~E~A~~~~~l~~~G~~Vtli~~~~~-il~~~d-------~----~------------------------------- 232 (486)
T TIGR01423 196 GFISVEFAGIFNAYKPRGGKVTLCYRNNM-ILRGFD-------S----T------------------------------- 232 (486)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEecCCc-cccccC-------H----H-------------------------------
Confidence 99999999877654111135999998875 334322 0 0
Q ss_pred HHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C---cEEEcCCceeeec
Q 014821 292 FVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D---GIVVDGQTTPLKT 365 (418)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~---~v~~~~g~~~~~~ 365 (418)
+.+.+.+.+++.+|+++.+. +.+++. + .+.+++|++ +++
T Consensus 233 ----------------------------------~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~-i~~ 277 (486)
T TIGR01423 233 ----------------------------------LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKT-LDV 277 (486)
T ss_pred ----------------------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCE-EEc
Confidence 11112334556678888876 666653 2 366678887 999
Q ss_pred cEEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 366 DLVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 366 D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|.||+|+|++|+..+.. +....+. +.++.+.++..+.++.||||.
T Consensus 278 D~vl~a~G~~Pn~~~l~------l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA 323 (486)
T TIGR01423 278 DVVMMAIGRVPRTQTLQ------LDKVGVELTKKGAIQVDEFSRTNVPNIYA 323 (486)
T ss_pred CEEEEeeCCCcCcccCC------chhhCceECCCCCEecCCCCcCCCCCEEE
Confidence 99999999999954332 1111121 345678888877788999985
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=201.35 Aligned_cols=284 Identities=16% Similarity=0.149 Sum_probs=171.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCC-CCCCCCCh
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDS-VTTDFPDH 76 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~-~~~~~~~~ 76 (418)
+||+|||+|++|+.+|..|+++|.+|+++|+. .+||.+.. +.|...+...+..++. ..+.+... ......+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 69999999999999999999999999999995 58988766 5555443322211110 01111100 00001111
Q ss_pred hHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
..+.+ .++..++++++ +++. .++..++... ..+...|...++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~~~~~~--------------------~~~~v~V~~~~g---~ 134 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGV--RVIA-GRGRLIDPGL--------------------GPHRVKVTTADG---G 134 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEE-EEEEEeeccc--------------------CCCEEEEEeCCC---c
Confidence 22222 23333444565 4444 4555543111 012344443332 2
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.+++.||+||+|||+. |..|+.+ +.. ...+++...+... ...+++++|||+|.+|+|+|..|...
T Consensus 135 ~~~~~~d~lViATGs~---p~~~p~~---~~~--~~~v~~~~~~~~~-------~~~~~~vvVIGgG~ig~E~A~~l~~~ 199 (466)
T PRK07845 135 EETLDADVVLIATGAS---PRILPTA---EPD--GERILTWRQLYDL-------DELPEHLIVVGSGVTGAEFASAYTEL 199 (466)
T ss_pred eEEEecCEEEEcCCCC---CCCCCCC---CCC--CceEEeehhhhcc-------cccCCeEEEECCCHHHHHHHHHHHHc
Confidence 3479999999999954 6555433 221 1124443333221 13468999999999999999999888
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.+.+. +++... . .
T Consensus 200 g~~---Vtli~~~~~-~l~~~d-------~----~--------------------------------------------- 219 (466)
T PRK07845 200 GVK---VTLVSSRDR-VLPGED-------A----D--------------------------------------------- 219 (466)
T ss_pred CCe---EEEEEcCCc-CCCCCC-------H----H---------------------------------------------
Confidence 765 999998775 333322 0 0
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
..+.+.+.+++.+|+++.+. +..++ +++ +.+.+|++ +++|.||+|+|++|+...
T Consensus 220 --------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~-l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 220 --------------------AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRT-VEGSHALMAVGSVPNTAG 278 (466)
T ss_pred --------------------HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcE-EEecEEEEeecCCcCCCC
Confidence 00112235566678888775 66664 333 45568887 999999999999999553
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 279 l~------l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA 309 (466)
T PRK07845 279 LG------LEEAGVELTPSGHITVDRVSRTSVPGIYA 309 (466)
T ss_pred CC------chhhCceECCCCcEeECCCcccCCCCEEE
Confidence 21 2222222 345678888877789999985
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=202.51 Aligned_cols=295 Identities=12% Similarity=0.179 Sum_probs=169.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCC--
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFP-- 74 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~-- 74 (418)
++||+|||||++|+.+|..+++.|.+|+|||+. .+||.+.. +.|...+...+..+... .+.........+.
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~ 126 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLL 126 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHH
Confidence 589999999999999999999999999999995 79998776 67766655444432211 1111100001111
Q ss_pred --ChhHHHHH----HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC-CCCceEEE------EecC
Q 014821 75 --DHNQVLDY----IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG-SRGKWTVA------VEDA 141 (418)
Q Consensus 75 --~~~~~~~~----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~------~~~~ 141 (418)
..+.+... ++...+..++ .+.. ....-+..+... -.+...-+++-.. .++..+|. ..++
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~gv--~~~~-G~a~f~~~~~v~-----v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 198 (561)
T PTZ00058 127 VERRDKYIRRLNDIYRQNLKKDNV--EYFE-GKGSLLSENQVL-----IKKVSQVDGEADESDDDEVTIVSAGVSQLDDG 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCc--EEEE-EEEEEecCCEEE-----eeccccccccccccccccceeeeccceecCCC
Confidence 11122111 2222333444 3333 222111111000 0000000000000 01122231 1122
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
.++.||+||+|||+ .|..|+++ |.+ .++.+..+.. ...+++|+|||+|.+|+|+|..
T Consensus 199 -----~~i~ad~lVIATGS---~P~~P~Ip---G~~----~v~ts~~~~~--------l~~pk~VvIIGgG~iGlE~A~~ 255 (561)
T PTZ00058 199 -----QVIEGKNILIAVGN---KPIFPDVK---GKE----FTISSDDFFK--------IKEAKRIGIAGSGYIAVELINV 255 (561)
T ss_pred -----cEEECCEEEEecCC---CCCCCCCC---Cce----eEEEHHHHhh--------ccCCCEEEEECCcHHHHHHHHH
Confidence 47999999999994 57778777 653 2343333222 1237899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
+...+.. |+++.+.++ +++... . .
T Consensus 256 l~~~G~~---Vtli~~~~~-il~~~d-------~----~----------------------------------------- 279 (561)
T PTZ00058 256 VNRLGAE---SYIFARGNR-LLRKFD-------E----T----------------------------------------- 279 (561)
T ss_pred HHHcCCc---EEEEEeccc-ccccCC-------H----H-----------------------------------------
Confidence 9988865 999999875 334322 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC---cE--EEcCC-ceeeeccEEEEccCC
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GI--VVDGQ-TTPLKTDLVILATGF 374 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---~v--~~~~g-~~~~~~D~Vi~atG~ 374 (418)
+.+.+.+.+++.+|+++.+. +.+++++ ++ .+.++ ++ +++|.|++|+|+
T Consensus 280 ------------------------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~-i~aD~VlvA~Gr 334 (561)
T PTZ00058 280 ------------------------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKY-EHFDYVIYCVGR 334 (561)
T ss_pred ------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEE-EECCEEEECcCC
Confidence 01112234566678888776 6667542 23 33444 45 999999999999
Q ss_pred CCCcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+.+.+.. ........++.+.++..+.++.|+||.
T Consensus 335 ~Pn~~~L~l------~~~~~~~~~G~I~VDe~lqTs~p~IYA 370 (561)
T PTZ00058 335 SPNTEDLNL------KALNIKTPKGYIKVDDNQRTSVKHIYA 370 (561)
T ss_pred CCCccccCc------cccceecCCCeEEECcCCccCCCCEEE
Confidence 999543321 111111345778888888889999985
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=198.93 Aligned_cols=279 Identities=14% Similarity=0.148 Sum_probs=164.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..|++.|.+++|||+ +.+||.|.. ++|...+......++. ..+..... ....+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE--NVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC--CCcCCH
Confidence 48999999999999999999999999999999 889998876 5555443332222211 11111100 111222
Q ss_pred hHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
..+..+.+. ..++.++ .+.. .++..++. +.+.+...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~~------------------------~~~~v~~~~g---- 126 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIK-GEAKFLDP------------------------GTVLVTGENG---- 126 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccC------------------------CEEEEecCCC----
Confidence 333333222 2223343 2333 33333322 2244443222
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
..++.||+||+|||+. |..|+++ . +... ..+.++.+... ....+++|+|||+|.+|+|+|..|...
T Consensus 127 ~~~~~~d~lVlAtG~~---p~~~~~~-~-~~~~--~~~~~~~~~~~-------~~~~~~~vvViGgG~~g~e~A~~l~~~ 192 (461)
T TIGR01350 127 EETLTAKNIIIATGSR---PRSLPGP-F-DFDG--EVVITSTGALN-------LKEVPESLVIIGGGVIGIEFASIFASL 192 (461)
T ss_pred cEEEEeCEEEEcCCCC---CCCCCCC-C-CCCC--ceEEcchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 1579999999999954 6555442 0 1111 12322222211 123468999999999999999999988
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.|.+. +.|... ..
T Consensus 193 g~~---Vtli~~~~~-~l~~~~-----------~~--------------------------------------------- 212 (461)
T TIGR01350 193 GSK---VTVIEMLDR-ILPGED-----------AE--------------------------------------------- 212 (461)
T ss_pred CCc---EEEEEcCCC-CCCCCC-----------HH---------------------------------------------
Confidence 765 999999875 333221 00
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCcE--EEcCC--ceeeeccEEEEccCCCCCc
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDGI--VVDGQ--TTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~v--~~~~g--~~~~~~D~Vi~atG~~~~~ 378 (418)
+...+.+.+++.+|+++.+. +..++ ++++ .+.+| ++ +++|.||+|+|++|+.
T Consensus 213 --------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~-i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 213 --------------------VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETET-LTGEKVLVAVGRKPNT 271 (461)
T ss_pred --------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEE-EEeCEEEEecCCcccC
Confidence 00111234555678888875 66664 3344 34456 35 9999999999999985
Q ss_pred chhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 379 KLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
... .+....+. +.++.+.++..+.++.|+||.
T Consensus 272 ~~l------~~~~~gl~~~~~g~i~vd~~l~t~~~~Iya 304 (461)
T TIGR01350 272 EGL------GLENLGVELDERGRIVVDEYMRTNVPGIYA 304 (461)
T ss_pred CCC------CcHhhCceECCCCcEeeCCCcccCCCCEEE
Confidence 411 11221111 345667787777778899985
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=199.38 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=166.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (418)
.+||+|||||++|..+|.. ..|.+|.|+|+ ..+||.+.+ +.|...+...+..++.. .+.+.. ...-.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA--ELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC--CCCcCCH
Confidence 4899999999999998866 45999999998 578998777 67766555444333211 111110 0111244
Q ss_pred hHHHHHHHHHHHhcCcc--c---------ceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLDYIQSYASHFDLR--K---------HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~--~---------~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
..+.++.+...+++... . ++.. .++..++ ..+|.+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~a~~~~--------------------------~~~V~v~~g---- 124 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYR-GHARFIG--------------------------PKTLRTGDG---- 124 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEE-EEEEEec--------------------------CCEEEECCC----
Confidence 55555554444432110 0 1111 2222221 134666544
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.++.||+||+|||+ .|..|+++ +.+.. .+..+.+... ....+++++|||+|.+|+|+|..|...
T Consensus 125 -~~~~~d~lViATGs---~p~~p~i~---g~~~~--~~~~~~~~~~-------l~~~~~~vvIIGgG~iG~E~A~~l~~~ 188 (451)
T PRK07846 125 -EEITADQVVIAAGS---RPVIPPVI---ADSGV--RYHTSDTIMR-------LPELPESLVIVGGGFIAAEFAHVFSAL 188 (451)
T ss_pred -CEEEeCEEEEcCCC---CCCCCCCC---CcCCc--cEEchHHHhh-------hhhcCCeEEEECCCHHHHHHHHHHHHc
Confidence 47999999999994 57778777 54321 1222212111 123468999999999999999999988
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.|++..+ +... . .+. +
T Consensus 189 G~~---Vtli~~~~~ll-~~~d-------~----~~~--------------------------------~---------- 211 (451)
T PRK07846 189 GVR---VTVVNRSGRLL-RHLD-------D----DIS--------------------------------E---------- 211 (451)
T ss_pred CCe---EEEEEcCCccc-cccC-------H----HHH--------------------------------H----------
Confidence 765 99999987532 3221 0 000 0
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
.+.+.++ .+++++.+. +.+++.+ + +.+.+|++ +++|.||+|+|++|+.++
T Consensus 212 -----------------------~l~~l~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 212 -----------------------RFTELAS-KRWDVRLGRNVVGVSQDGSGVTLRLDDGST-VEADVLLVATGRVPNGDL 266 (451)
T ss_pred -----------------------HHHHHHh-cCeEEEeCCEEEEEEEcCCEEEEEECCCcE-eecCEEEEEECCccCccc
Confidence 0011222 347777665 6666532 2 55667888 999999999999999654
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 267 l~------~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 267 LD------AAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred cC------chhcCceECCCCcEeECCCcccCCCCEEE
Confidence 32 1111111 345778888888889999985
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=199.89 Aligned_cols=279 Identities=18% Similarity=0.228 Sum_probs=167.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--------CCCccccc--cCCcceecCCcccccc----CCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDS 68 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--------~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~ 68 (418)
.+||+|||+|++|+.+|..+++.|.+|.++|+.. .+||.|.. +.|...+...+..+.. ..+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 47888776 7776665443332221 11111100
Q ss_pred CCCCCCChhHHHHHHHHHHH-----------hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 69 VTTDFPDHNQVLDYIQSYAS-----------HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+...+.++.+...+ ..++ ++ +......++. + +|.
T Consensus 82 -~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v--~~-i~G~a~f~~~------------------------~--~v~ 131 (484)
T TIGR01438 82 -ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKV--NY-ENAYAEFVDK------------------------H--RIK 131 (484)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEcCC------------------------C--EEE
Confidence 0011223333333333222 2233 22 2233333322 2 244
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
+... ++...++.||+||+|||+ .|..|+++ |.+.+ .+.+...... ...+++++|||+|.+|+|
T Consensus 132 v~~~-~g~~~~~~~d~lVIATGs---~p~~p~ip---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E 194 (484)
T TIGR01438 132 ATNK-KGKEKIYSAERFLIATGE---RPRYPGIP---GAKEL---CITSDDLFSL-------PYCPGKTLVVGASYVALE 194 (484)
T ss_pred Eecc-CCCceEEEeCEEEEecCC---CCCCCCCC---Cccce---eecHHHhhcc-------cccCCCEEEECCCHHHHH
Confidence 4322 133357999999999995 57778777 75432 2332222221 124578999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..|...+.. |+++.|. . +++... . .
T Consensus 195 ~A~~l~~~G~~---Vtli~~~-~-~l~~~d-------~----~------------------------------------- 221 (484)
T TIGR01438 195 CAGFLAGIGLD---VTVMVRS-I-LLRGFD-------Q----D------------------------------------- 221 (484)
T ss_pred HHHHHHHhCCc---EEEEEec-c-cccccC-------H----H-------------------------------------
Confidence 99999998765 9999974 2 334322 0 0
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCc---eeeeccEEE
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQT---TPLKTDLVI 369 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~---~~~~~D~Vi 369 (418)
+.+.+.+.+++.+|+++.+. +..++. +. +++++++ + +++|.||
T Consensus 222 ----------------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~-i~~D~vl 272 (484)
T TIGR01438 222 ----------------------------CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIE-EEYDTVL 272 (484)
T ss_pred ----------------------------HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceE-EEeCEEE
Confidence 01112234556678888775 555542 22 5555653 5 9999999
Q ss_pred EccCCCCCcchhccccchhhhhhhcC-C-CCCCccceeeeeeccCcccc
Q 014821 370 LATGFKGDVKLKNIFLSQTFQDYLAG-S-PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 370 ~atG~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+|++|+..++. +....+. + .++.+.++..+.++.|+||.
T Consensus 273 ~a~G~~pn~~~l~------l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA 315 (484)
T TIGR01438 273 LAIGRDACTRKLN------LENVGVKINKKTGKIPADEEEQTNVPYIYA 315 (484)
T ss_pred EEecCCcCCCcCC------cccccceecCcCCeEecCCCcccCCCCEEE
Confidence 9999999954321 1111121 1 23667777777788999985
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=196.52 Aligned_cols=261 Identities=13% Similarity=0.147 Sum_probs=164.8
Q ss_pred cEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+|||||||++|+.+|..|+++ +.+|+|||+++.. .|... .|. + .....+..++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~------~~~~~---~~~----~---------~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT------PYSGM---LPG----M---------IAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC------cccch---hhH----H---------HheeCCHHHhcc
Confidence 589999999999999999753 5799999997621 01100 000 0 001112234555
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+++..+++++ ++.. .+|++++... ..|.+.++ .++.||+||+|||+.
T Consensus 59 ~~~~~~~~~gv--~~~~-~~v~~id~~~------------------------~~V~~~~g-----~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 59 DLRRLARQAGA--RFVI-AEATGIDPDR------------------------RKVLLANR-----PPLSYDVLSLDVGST 106 (364)
T ss_pred cHHHHHHhcCC--EEEE-EEEEEEeccc------------------------CEEEECCC-----CcccccEEEEccCCC
Confidence 56666777787 5554 6899998766 35777665 479999999999954
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCC---Cchhhhhhh---hcCCCEEEEEcCCCCHHHHHHHHhhhcC---CCCCe
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYS---DMDYEAAAN---LVKGKRVTVVGLQKSALDIAMECTTANG---LENPC 232 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~v~VvG~G~sa~e~a~~l~~~~~---~~~~V 232 (418)
|..|.++ |..+. ++....+. ......... ...+++|+|||+|.+|+|+|..|..... ...+|
T Consensus 107 ---~~~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V 177 (364)
T TIGR03169 107 ---TPLSGVE---GAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQV 177 (364)
T ss_pred ---CCCCCCC---ccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceE
Confidence 6666666 53321 11111110 000000011 1246799999999999999999986421 11359
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++ +.+. +++... ..
T Consensus 178 ~li-~~~~-~l~~~~-----------~~---------------------------------------------------- 192 (364)
T TIGR03169 178 TLI-AGAS-LLPGFP-----------AK---------------------------------------------------- 192 (364)
T ss_pred EEE-eCCc-ccccCC-----------HH----------------------------------------------------
Confidence 998 4332 222211 00
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.+.+++.+|+++.+. +..++++.+.+++|++ +++|.||+|+|.+++. ++..
T Consensus 193 -------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~---------~l~~ 249 (364)
T TIGR03169 193 -------------VRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRT-LPADAILWATGARAPP---------WLAE 249 (364)
T ss_pred -------------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCE-EecCEEEEccCCChhh---------HHHH
Confidence 11122345667788999886 7788877899999998 9999999999999873 2222
Q ss_pred hhcC-CCCCCccceeee-eeccCcccc
Q 014821 392 YLAG-SPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 392 ~~~~-~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
..+. +..+.+.++..+ .++.||||.
T Consensus 250 ~gl~~~~~g~i~vd~~l~~~~~~~Iya 276 (364)
T TIGR03169 250 SGLPLDEDGFLRVDPTLQSLSHPHVFA 276 (364)
T ss_pred cCCCcCCCCeEEECCccccCCCCCEEE
Confidence 2221 346778888777 558999985
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=197.69 Aligned_cols=284 Identities=13% Similarity=0.156 Sum_probs=165.7
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEee------CCCCCccccc--cCCcceecCCccccc-c----CCCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA------RSDIGGAWIK--TVETTMLQTPKQLYQ-F----SDYPWP 66 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~------~~~~gg~~~~--~~~~~~l~~~~~~~~-~----~~~~~~ 66 (418)
|. .+||+|||||++|+++|.++++.|.+++|+|+ ...+||.|.. +.|...+......+. + ..+...
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 53 68999999999999999999999999999998 3568888876 445433322221111 0 111111
Q ss_pred CCCCCCCCChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 67 DSVTTDFPDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
.. ..-.+...+.++ ++...+..++ ++. ..++..++... ..++
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~~----------------------~~~~ 133 (475)
T PRK06327 81 VD--GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKTD----------------------AGYE 133 (475)
T ss_pred CC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCCC----------------------CCCE
Confidence 00 000112222222 2222333344 333 35555555433 3466
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccC-CCCchhhhhhhhcCCCEEEEEcCCCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMD-YSDMDYEAAANLVKGKRVTVVGLQKS 214 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~VvG~G~s 214 (418)
|.+.... ..++.||+||+|||+. |..++ +.. +.+..++.+. ... ....+++|+|||+|.+
T Consensus 134 v~v~~~~---~~~~~~d~lViATGs~---p~~~p-----~~~-~~~~~~~~~~~~~~-------~~~~~~~vvVvGgG~~ 194 (475)
T PRK06327 134 IKVTGED---ETVITAKHVIIATGSE---PRHLP-----GVP-FDNKIILDNTGALN-------FTEVPKKLAVIGAGVI 194 (475)
T ss_pred EEEecCC---CeEEEeCEEEEeCCCC---CCCCC-----CCC-CCCceEECcHHHhc-------ccccCCeEEEECCCHH
Confidence 7765321 1479999999999965 54332 211 1122222222 111 1234689999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHH
Q 014821 215 ALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVE 294 (418)
Q Consensus 215 a~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (418)
|+|+|..|...+.. |+++.+.+.+ ++... . .
T Consensus 195 g~E~A~~l~~~g~~---Vtli~~~~~~-l~~~d-------~----~---------------------------------- 225 (475)
T PRK06327 195 GLELGSVWRRLGAE---VTILEALPAF-LAAAD-------E----Q---------------------------------- 225 (475)
T ss_pred HHHHHHHHHHcCCe---EEEEeCCCcc-CCcCC-------H----H----------------------------------
Confidence 99999999888765 9999998753 33211 0 0
Q ss_pred HHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcC--Cc-eeeecc
Q 014821 295 ADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDG--QT-TPLKTD 366 (418)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~--g~-~~~~~D 366 (418)
+.+.+.+.+++.+|+++.+. +..++.+ + +.+.+ |+ ..+++|
T Consensus 226 -------------------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D 274 (475)
T PRK06327 226 -------------------------------VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVD 274 (475)
T ss_pred -------------------------------HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcC
Confidence 01112234455678888775 7777543 3 34444 33 238999
Q ss_pred EEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 367 LVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 367 ~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.||+|+|++|+...+. +....+. +.++.+.++..+.++.||||.
T Consensus 275 ~vl~a~G~~p~~~~l~------~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA 319 (475)
T PRK06327 275 KLIVSIGRVPNTDGLG------LEAVGLKLDERGFIPVDDHCRTNVPNVYA 319 (475)
T ss_pred EEEEccCCccCCCCCC------cHhhCceeCCCCeEeECCCCccCCCCEEE
Confidence 9999999999954211 1111111 345667787777778999985
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=209.14 Aligned_cols=170 Identities=23% Similarity=0.384 Sum_probs=114.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+||+++|..|++.|++|+|||+.+.+||.+....|..++ ..++..+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rl------------------------p~evL~~ 594 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRI------------------------PAELIQH 594 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccc------------------------cHHHHHH
Confidence 4799999999999999999999999999999999899876654332211 1244444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ ++.+++.+ ++.... . ....||+||||||+.
T Consensus 595 die~l~~~GV--e~~~gt~V-di~le~-------------------------------L-----~~~gYDaVILATGA~- 634 (1019)
T PRK09853 595 DIEFVKAHGV--KFEFGCSP-DLTVEQ-------------------------------L-----KNEGYDYVVVAIGAD- 634 (1019)
T ss_pred HHHHHHHcCC--EEEeCcee-EEEhhh-------------------------------h-----eeccCCEEEECcCCC-
Confidence 4555666788 78887766 222111 1 245599999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
.|..++++ |.+. .++++..+.............+++|+|||+|.+|+|+|..+...++. ++|++++|+....
T Consensus 635 -~~~~l~Ip---G~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGa-keVTLVyRr~~~~ 706 (1019)
T PRK09853 635 -KNGGLKLE---GGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRTKQE 706 (1019)
T ss_pred -CCCCCCCC---CccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCC-ceEEEEEccCccc
Confidence 34555566 5431 23433322211000112334689999999999999999988776542 3699999987433
Q ss_pred cc
Q 014821 243 IP 244 (418)
Q Consensus 243 ~~ 244 (418)
.|
T Consensus 707 MP 708 (1019)
T PRK09853 707 MP 708 (1019)
T ss_pred cc
Confidence 33
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-22 Score=210.71 Aligned_cols=261 Identities=15% Similarity=0.171 Sum_probs=169.7
Q ss_pred EEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 6 IAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
|||||+|++|+.+|..|++. +.+|+||++.+.++ |....+ +. +. ... .+..++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------y~r~~L--~~----~l--------~g~-~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------YNRILL--SS----VL--------QGE-ADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------cccccc--cH----HH--------CCC-CCHHHccCC
Confidence 69999999999999999875 46899999987542 110000 00 00 000 011222222
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+..++.++ +++++++|+.|+... +.|.+.++ .++.||+||+|||+
T Consensus 60 ~~~~~~~~gv--~~~~g~~V~~Id~~~------------------------k~V~~~~g-----~~~~yD~LVlATGs-- 106 (785)
T TIGR02374 60 SKDWYEKHGI--TLYTGETVIQIDTDQ------------------------KQVITDAG-----RTLSYDKLILATGS-- 106 (785)
T ss_pred CHHHHHHCCC--EEEcCCeEEEEECCC------------------------CEEEECCC-----cEeeCCEEEECCCC--
Confidence 3334456688 788889999998765 56777665 57999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
.|..|+++ |.+.. .++....+.+.. ........+++++|||+|.+|+|+|..|...+.. |+++.+.+.++
T Consensus 107 -~p~~p~ip---G~~~~--~v~~~rt~~d~~-~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~---Vtvv~~~~~ll 176 (785)
T TIGR02374 107 -YPFILPIP---GADKK--GVYVFRTIEDLD-AIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD---VSVIHHAPGLM 176 (785)
T ss_pred -CcCCCCCC---CCCCC--CEEEeCCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEccCCchh
Confidence 47777777 65432 233321111110 1112234578999999999999999999998765 99999877532
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
..... ..
T Consensus 177 ~~~ld-------~~------------------------------------------------------------------ 183 (785)
T TIGR02374 177 AKQLD-------QT------------------------------------------------------------------ 183 (785)
T ss_pred hhhcC-------HH------------------------------------------------------------------
Confidence 11111 00
Q ss_pred ccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCC
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~ 397 (418)
....+.+.+++.+|+++.+. +.++..+ +|+++||++ +++|.||+|+|++|+..+++.. .+..
T Consensus 184 ---~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~-i~~D~Vi~a~G~~Pn~~la~~~--------gl~~- 250 (785)
T TIGR02374 184 ---AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSS-LEADLIVMAAGIRPNDELAVSA--------GIKV- 250 (785)
T ss_pred ---HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCE-EEcCEEEECCCCCcCcHHHHhc--------CCcc-
Confidence 00111234556678888876 6666543 378899998 9999999999999996554332 2222
Q ss_pred CCCccceeeeeeccCcccc
Q 014821 398 TEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (418)
++.+.++..+.++.|+||.
T Consensus 251 ~ggI~Vd~~~~Ts~p~IyA 269 (785)
T TIGR02374 251 NRGIIVNDSMQTSDPDIYA 269 (785)
T ss_pred CCCEEECCCcccCCCCEEE
Confidence 2567787777788999985
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=196.27 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=162.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCCCCCCCCChhH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 78 (418)
+|+|||||++|+++|..|++.|.+|+|||++ .+||.+.. +.|...+......++. ..+...........+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 7999999999999999999999999999995 58887665 5665444332222111 111111000011123334
Q ss_pred HHHHHHHHHHh-----------cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 79 VLDYIQSYASH-----------FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 79 ~~~~l~~~~~~-----------~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
+..+..+..++ .++ ++ +..++..++. +...|...++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~~~------------------------~~v~v~~~~~----~~ 129 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKI--KV-IQGKASFETD------------------------HRVRVEYGDK----EE 129 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEccC------------------------CEEEEeeCCC----cE
Confidence 44333332222 222 12 2234433332 2244443222 25
Q ss_pred EEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 014821 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~ 227 (418)
++.||+||+|||+. |..|+++ +.+. ..++++..... ....+++++|||+|.+|+|+|..+...+.
T Consensus 130 ~~~~d~lviATGs~---p~~~p~~---~~~~--~~v~~~~~~~~-------~~~~~~~vvIIGgG~iG~E~A~~l~~~g~ 194 (458)
T PRK06912 130 VVDAEQFIIAAGSE---PTELPFA---PFDG--KWIINSKHAMS-------LPSIPSSLLIVGGGVIGCEFASIYSRLGT 194 (458)
T ss_pred EEECCEEEEeCCCC---CCCCCCC---CCCC--CeEEcchHHhC-------ccccCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 79999999999954 6555555 4321 12444332222 12346899999999999999999988775
Q ss_pred CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccC
Q 014821 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (418)
Q Consensus 228 ~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (418)
. |+++.+.+. +++... . .
T Consensus 195 ~---Vtli~~~~~-ll~~~d-------~----e----------------------------------------------- 212 (458)
T PRK06912 195 K---VTIVEMAPQ-LLPGED-------E----D----------------------------------------------- 212 (458)
T ss_pred e---EEEEecCCC-cCcccc-------H----H-----------------------------------------------
Confidence 5 999998875 333211 0 0
Q ss_pred CCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEEEc-CCc-eeeeccEEEEccCCCCCcchhc
Q 014821 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVVD-GQT-TPLKTDLVILATGFKGDVKLKN 382 (418)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~~~-~g~-~~~~~D~Vi~atG~~~~~~~~~ 382 (418)
+.+.+.+.+++.+|+++.+. +..++.+ .+.+. +|+ ..+++|.||+|||.+|+.....
T Consensus 213 ------------------~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~ 274 (458)
T PRK06912 213 ------------------IAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN 274 (458)
T ss_pred ------------------HHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC
Confidence 00112234455678888876 6666543 24443 343 2389999999999999853211
Q ss_pred cccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 383 IFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+...++.+.++..+.++.||||.
T Consensus 275 ------l~~~gv~~~~~gi~Vd~~~~ts~~~VyA 302 (458)
T PRK06912 275 ------LEKAGVQFSNKGISVNEHMQTNVPHIYA 302 (458)
T ss_pred ------chhcCceecCCCEEeCCCeecCCCCEEE
Confidence 1111121223347888777788999985
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-22 Score=197.71 Aligned_cols=167 Identities=26% Similarity=0.339 Sum_probs=111.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..+. +....++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPE------------------------FRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCC------------------------ccCCHHHHH
Confidence 35799999999999999999999999999999988888765432221 011134555
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.......++++ +++.++.+ . ..+++.+. ...||+||+|||+.
T Consensus 188 ~~~~~l~~~gv--~~~~~~~v------~------------------------~~v~~~~~------~~~yd~viiAtGa~ 229 (449)
T TIGR01316 188 TEIKTLKKLGV--TFRMNFLV------G------------------------KTATLEEL------FSQYDAVFIGTGAG 229 (449)
T ss_pred HHHHHHHhCCc--EEEeCCcc------C------------------------CcCCHHHH------HhhCCEEEEeCCCC
Confidence 55555566777 66665533 1 12333222 24699999999973
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhh--------hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeE
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~ 233 (418)
.|..|.++ |.+. ..+++..++...... .......+++|+|||+|.+|+|+|..+...|.. |+
T Consensus 230 --~p~~~~ip---G~~~--~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~---Vt 299 (449)
T TIGR01316 230 --LPKLMNIP---GEEL--CGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE---VH 299 (449)
T ss_pred --CCCcCCCC---CCCC--CCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE---EE
Confidence 47777777 6541 123333322110000 001234679999999999999999999988865 99
Q ss_pred EEEecCc
Q 014821 234 VLYRTEH 240 (418)
Q Consensus 234 ~~~r~~~ 240 (418)
+++|+..
T Consensus 300 lv~~~~~ 306 (449)
T TIGR01316 300 CLYRRTR 306 (449)
T ss_pred EEeecCc
Confidence 9999764
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=188.35 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=189.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccc--cccCCcceecCCccccc-------cCCCCC------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAW--IKTVETTMLQTPKQLYQ-------FSDYPW------ 65 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~--~~~~~~~~l~~~~~~~~-------~~~~~~------ 65 (418)
+++|+|||||++|+++|.+|.+.+ .+|+|||++..+|..+ ....+...++.+...++ |..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 368999999999999999998854 5899999988888554 33333444443322222 111100
Q ss_pred ------CC--CCCCCCCChhHHHHHHHHHHHhc-------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 66 ------PD--SVTTDFPDHNQVLDYIQSYASHF-------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 66 ------~~--~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
.. .....|+++..+.+|+++..+.+ +..-.++.+++|++++..+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--------------------- 139 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--------------------- 139 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---------------------
Confidence 00 01246888888988888765543 2111455677999998766
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEc
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG 210 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 210 (418)
+.|.|++.++. ..+.+|.||+|+|.. .|..+. +...| ....|.... .....+.+|+|+|
T Consensus 140 -~g~~V~t~~gg----~~i~aD~VVLAtGh~--~p~~~~-----~~~~y-----i~~pw~~~~----~~~i~~~~V~I~G 198 (534)
T PRK09897 140 -AGVMLATNQDL----PSETFDLAVIATGHV--WPDEEE-----ATRTY-----FPSPWSGLM----EAKVDACNVGIMG 198 (534)
T ss_pred -CEEEEEECCCC----eEEEcCEEEECCCCC--CCCCCh-----hhccc-----cCCCCcchh----hcCCCCCeEEEEC
Confidence 56778765431 478999999999964 233321 22222 112232111 1122368999999
Q ss_pred CCCCHHHHHHHHhhhc------------------CCCCCeEEEEecCcccccCCCCCC--CcchhhhhhHHHHHhhcCCC
Q 014821 211 LQKSALDIAMECTTAN------------------GLENPCTVLYRTEHWNIPDYFPWG--FPLAYLYLNRFAELLVHKPG 270 (418)
Q Consensus 211 ~G~sa~e~a~~l~~~~------------------~~~~~V~~~~r~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 270 (418)
.|++++|++..|..++ ++..+|++++|++.....+..... .|....+...+..+..+-..
T Consensus 199 tGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~P~~~~~~~~~~~p~~~lT~~~i~~~~~~~~~ 278 (534)
T PRK09897 199 TSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIAKGEE 278 (534)
T ss_pred CCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCCCCcccccCCCCCChhhhcCHHHHHHHHHhcCC
Confidence 9999999999998663 133679999999954332211011 12111111111111000000
Q ss_pred ------------------------------------------------chhHHHHHHh-----------hhhHHHHHHHH
Q 014821 271 ------------------------------------------------EGFLLSLLAT-----------MLSPLRWAISK 291 (418)
Q Consensus 271 ------------------------------------------------~~~~~~~~~~-----------~~~~~~~~~~~ 291 (418)
..+.+....- .+..+...++.
T Consensus 279 ~~L~~~~~L~~kE~~~~~~~~~~~i~~~~l~~~~~~~~~~~~r~~~~~~~~~r~~~~e~~~~~~~~~~~~w~~~i~~l~~ 358 (534)
T PRK09897 279 GLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHE 358 (534)
T ss_pred CcHHHHHHHHHHHHHHhCcchhhhccccccChHHHHHHHHhhhccCCHHHHHHHhHHHHHhhhccccCccHHHHHHHHHH
Confidence 0011111110 01122223344
Q ss_pred HHHHHHHhhhhhcccCCCCCcccccccccccccccCc-chhhhhccCcEEEeccC--ce-eEecCc--EEEcCCceeeec
Q 014821 292 FVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPE-KFYDKVEEGSIILKKSQ--DF-SFCEDG--IVVDGQTTPLKT 365 (418)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~--v~-~~~~~~--v~~~~g~~~~~~ 365 (418)
.+...|..+....++.+...+...|....+++|.-+. .+.+++++|.++++.+. +. ...+++ +..++ .. ..+
T Consensus 359 ~~~~iw~~l~~~d~~rf~~~l~~~~~~~~~~mP~~sa~~l~~l~~aG~L~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 436 (534)
T PRK09897 359 AVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVIKTED-NS-YSF 436 (534)
T ss_pred HHHHHHHhCCHHHHHHHHHhhhHHHHHhccCCChHHHHHHHHHHHcCCEEEEecCccceeEecCCeEEEEeCC-Cc-eEe
Confidence 4445555554444444444444445445666666665 77788899999999874 31 222333 44444 56 999
Q ss_pred cEEEEccCCCCC
Q 014821 366 DLVILATGFKGD 377 (418)
Q Consensus 366 D~Vi~atG~~~~ 377 (418)
|++|.|||+++-
T Consensus 437 ~~~i~a~G~~~~ 448 (534)
T PRK09897 437 DVFIDARGQRPL 448 (534)
T ss_pred CEEEECCCCCCC
Confidence 999999999964
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=196.58 Aligned_cols=169 Identities=24% Similarity=0.359 Sum_probs=114.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.+||.+.+..|. +.++ ..++..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~~l~---------~~~~~~~ 196 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE--------------FRLP---------KETVVKK 196 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCC--------------ccCC---------ccHHHHH
Confidence 4799999999999999999999999999999988888876542221 1111 1345666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++++ .+++++.+. . .+++.+. ...+.||+||||||+.
T Consensus 197 ~~~~~~~~gv--~i~~~~~v~-----~-------------------------~v~~~~~----~~~~~~d~viiAtGa~- 239 (464)
T PRK12831 197 EIENIKKLGV--KIETNVVVG-----K-------------------------TVTIDEL----LEEEGFDAVFIGSGAG- 239 (464)
T ss_pred HHHHHHHcCC--EEEcCCEEC-----C-------------------------cCCHHHH----HhccCCCEEEEeCCCC-
Confidence 6667777888 777776541 1 1222221 0235699999999973
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCch-------hhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMD-------YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
.|+.++++ |.+. ..++....+.... .........+++|+|||+|.+|+|+|..+...|.. |+++
T Consensus 240 -~~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~---Vtlv 310 (464)
T PRK12831 240 -LPKFMGIP---GENL--NGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE---VHIV 310 (464)
T ss_pred -CCCCCCCC---CcCC--cCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE---EEEE
Confidence 47777777 6542 1233322221100 00001235689999999999999999999998875 9999
Q ss_pred EecCc
Q 014821 236 YRTEH 240 (418)
Q Consensus 236 ~r~~~ 240 (418)
+|+..
T Consensus 311 ~r~~~ 315 (464)
T PRK12831 311 YRRSE 315 (464)
T ss_pred eecCc
Confidence 98764
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=193.01 Aligned_cols=167 Identities=27% Similarity=0.418 Sum_probs=112.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+++|..|++.|++++|||+.+.+||.+....|. +....++..+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~------------------------~~~~~~~~~~ 195 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPE------------------------FRLPKDIVDR 195 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCC------------------------ccCCHHHHHH
Confidence 4799999999999999999999999999999998888765442221 1112356666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ .++.++.+.. .+++.+. .+.||+||+|||+.
T Consensus 196 ~~~~l~~~gv--~~~~~~~v~~------------------------------~v~~~~~------~~~~d~vvlAtGa~- 236 (457)
T PRK11749 196 EVERLLKLGV--EIRTNTEVGR------------------------------DITLDEL------RAGYDAVFIGTGAG- 236 (457)
T ss_pred HHHHHHHcCC--EEEeCCEECC------------------------------ccCHHHH------HhhCCEEEEccCCC-
Confidence 6677777787 6777665411 1222221 26799999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhh--hhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA--AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|..+.++ |.+. ..+++...+....... ......+++|+|||+|.+|+|+|..|...+. ++|++++|+..
T Consensus 237 -~~~~~~i~---G~~~--~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~--~~Vtlv~~~~~ 308 (457)
T PRK11749 237 -LPRFLGIP---GENL--GGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA--ESVTIVYRRGR 308 (457)
T ss_pred -CCCCCCCC---CccC--CCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecCc
Confidence 36666666 5542 1244433322111000 0122368999999999999999999988765 25999998764
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=190.05 Aligned_cols=273 Identities=13% Similarity=0.132 Sum_probs=160.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (418)
+.+|++|||+|++|..+|.. ..|.+|.++|+ ..+||.+.+ +.|...+...+..++.. .+.+.. .....+
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA--EIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC--CCCccC
Confidence 36899999999999998644 46999999998 579998877 77776665444333211 111110 011123
Q ss_pred hhHHHHHHHH-HHHh--------------cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 76 HNQVLDYIQS-YASH--------------FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 76 ~~~~~~~l~~-~~~~--------------~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
...+..+... ..+. .++ ++..+.. .-. +.++|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~-~~~--------------------------~~~~V~~~~ 126 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNI--DVYDGHA-RFV--------------------------GPRTLRTGD 126 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCe--EEEEEEE-EEe--------------------------cCCEEEECC
Confidence 3444444332 1111 122 1222111 111 224566654
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
+ .++.||+||+|||+ .|..|+.. +... ..+..+.+... ....+++++|||+|.+|+|+|.
T Consensus 127 g-----~~~~~d~lIiATGs---~p~~p~~~---~~~~--~~~~~~~~~~~-------l~~~~k~vvVIGgG~ig~E~A~ 186 (452)
T TIGR03452 127 G-----EEITGDQIVIAAGS---RPYIPPAI---ADSG--VRYHTNEDIMR-------LPELPESLVIVGGGYIAAEFAH 186 (452)
T ss_pred C-----cEEEeCEEEEEECC---CCCCCCCC---CCCC--CEEEcHHHHHh-------hhhcCCcEEEECCCHHHHHHHH
Confidence 4 46999999999995 46666533 2111 11222211111 1124789999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (418)
.|...+.. |+++.+.+. +++... .. +. .
T Consensus 187 ~l~~~G~~---Vtli~~~~~-ll~~~d-------~~----~~--------------------------------~----- 214 (452)
T TIGR03452 187 VFSALGTR---VTIVNRSTK-LLRHLD-------ED----IS--------------------------------D----- 214 (452)
T ss_pred HHHhCCCc---EEEEEccCc-cccccC-------HH----HH--------------------------------H-----
Confidence 99888765 999998775 223211 00 00 0
Q ss_pred hhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCC
Q 014821 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
.+.+.++ .+++++.+. +..++. ++ +.+.+|++ +++|.||+|+|++
T Consensus 215 ----------------------------~l~~~~~-~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~ 264 (452)
T TIGR03452 215 ----------------------------RFTEIAK-KKWDIRLGRNVTAVEQDGDGVTLTLDDGST-VTADVLLVATGRV 264 (452)
T ss_pred ----------------------------HHHHHHh-cCCEEEeCCEEEEEEEcCCeEEEEEcCCCE-EEcCEEEEeeccC
Confidence 0011122 236677665 666652 23 45567877 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+.++... ....+. +.++.+.++..+.++.||||.
T Consensus 265 pn~~~l~~------~~~gl~~~~~G~i~vd~~~~Ts~~~IyA 300 (452)
T TIGR03452 265 PNGDLLDA------EAAGVEVDEDGRIKVDEYGRTSARGVWA 300 (452)
T ss_pred cCCCCcCc------hhcCeeECCCCcEeeCCCcccCCCCEEE
Confidence 99654221 111111 345678888777889999995
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=172.03 Aligned_cols=288 Identities=20% Similarity=0.271 Sum_probs=176.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (418)
.+|+.|||||..|+++|++.+.+|.++.++|..-.+||++-. +.|...+-.-+... .-.++.|+......| ++
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f-dW 98 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF-DW 98 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC-cH
Confidence 589999999999999999999999999999997689988776 44443332211111 112334443222233 22
Q ss_pred hHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 77 NQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 77 ~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
..+.+.-..+..++ ++.+....+..|.=++... .+..++...|...++ ....+.+++++
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a-----------------~f~~~~~v~V~~~d~---~~~~Ytak~iL 158 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA-----------------RFVSPGEVEVEVNDG---TKIVYTAKHIL 158 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE-----------------EEcCCCceEEEecCC---eeEEEecceEE
Confidence 34443333333333 2222223333444443332 011123345555444 24568999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 156 lAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
+||| ..|.+|.+| |.+ .-+.|..+.++. ..+++++|||+|++|+|+|..++..|.+ ++++
T Consensus 159 IAtG---g~p~~PnIp---G~E----~gidSDgff~Le-------e~Pkr~vvvGaGYIavE~Agi~~gLgse---thlf 218 (478)
T KOG0405|consen 159 IATG---GRPIIPNIP---GAE----LGIDSDGFFDLE-------EQPKRVVVVGAGYIAVEFAGIFAGLGSE---THLF 218 (478)
T ss_pred EEeC---CccCCCCCC---chh----hccccccccchh-------hcCceEEEEccceEEEEhhhHHhhcCCe---eEEE
Confidence 9999 567777777 765 234444455533 5689999999999999999999999887 9999
Q ss_pred EecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccc
Q 014821 236 YRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFL 315 (418)
Q Consensus 236 ~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (418)
.|... ++..++ +.
T Consensus 219 iR~~k-vLR~FD-------------------------------------------~~----------------------- 231 (478)
T KOG0405|consen 219 IRQEK-VLRGFD-------------------------------------------EM----------------------- 231 (478)
T ss_pred Eecch-hhcchh-------------------------------------------HH-----------------------
Confidence 99874 222221 11
Q ss_pred cccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc---EEEcCCceeeeccEEEEccCCCCCcchhccccchhh
Q 014821 316 QELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (418)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~---v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~ 389 (418)
+++...+.+....|++|... +..+.. ++ +....|+. ..+|.++||+|.+|+..-+. |
T Consensus 232 ----------i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i-~~vd~llwAiGR~Pntk~L~------l 294 (478)
T KOG0405|consen 232 ----------ISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI-EDVDTLLWAIGRKPNTKGLN------L 294 (478)
T ss_pred ----------HHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc-ccccEEEEEecCCCCccccc------c
Confidence 11222345555668888875 554432 22 34455665 77999999999999842111 2
Q ss_pred hhhhcC-CCCCCccceeeeeeccCccc
Q 014821 390 QDYLAG-SPTEKLPLYRSAHIYIDTLT 415 (418)
Q Consensus 390 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 415 (418)
+...+. +.++.+.++..+-+++|+++
T Consensus 295 e~vGVk~~~~g~IivDeYq~Tnvp~I~ 321 (478)
T KOG0405|consen 295 ENVGVKTDKNGAIIVDEYQNTNVPSIW 321 (478)
T ss_pred hhcceeeCCCCCEEEeccccCCCCceE
Confidence 222221 44677777666667777765
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=160.64 Aligned_cols=268 Identities=16% Similarity=0.234 Sum_probs=183.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.+|+|||+||++-.+|+++++..++-++||-.- .+ ...|+=+|.+-...-.|+.+|-. ....++.+.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~----~i~pGGQLtTTT~veNfPGFPdg-------i~G~~l~d~m 76 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-AN----GIAPGGQLTTTTDVENFPGFPDG-------ITGPELMDKM 76 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee-cc----CcCCCceeeeeeccccCCCCCcc-------cccHHHHHHH
Confidence 489999999999999999999999999999632 11 02223233332222233333221 2457899999
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
++.+.++|. .++. ..|.+++... ..|.+.+... .+.+|.||+|||+.
T Consensus 77 rkqs~r~Gt--~i~t-EtVskv~~ss----------------------kpF~l~td~~------~v~~~avI~atGAs-- 123 (322)
T KOG0404|consen 77 RKQSERFGT--EIIT-ETVSKVDLSS----------------------KPFKLWTDAR------PVTADAVILATGAS-- 123 (322)
T ss_pred HHHHHhhcc--eeee-eehhhccccC----------------------CCeEEEecCC------ceeeeeEEEecccc--
Confidence 999999998 5555 6677777655 5587877554 79999999999976
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.+...+|++ |...|+.+-+.++..|+-. ..++.+|..+|||+|.+|+|-|..|...+. +|++++|++.+..
T Consensus 124 -AkRl~~pg~-ge~~fWqrGiSaCAVCDGa----apifrnk~laVIGGGDsA~EEA~fLtkyas---kVyii~Rrd~fRA 194 (322)
T KOG0404|consen 124 -AKRLHLPGE-GEGEFWQRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEALFLTKYAS---KVYIIHRRDHFRA 194 (322)
T ss_pred -eeeeecCCC-CcchHHhcccchhhcccCc----chhhcCCeeEEEcCcHHHHHHHHHHHhhcc---EEEEEEEhhhhhH
Confidence 344444422 3344777777777777643 466889999999999999999999988875 4999999886432
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
.. .++.
T Consensus 195 s~------------------~Mq~-------------------------------------------------------- 200 (322)
T KOG0404|consen 195 SK------------------IMQQ-------------------------------------------------------- 200 (322)
T ss_pred HH------------------HHHH--------------------------------------------------------
Confidence 21 1100
Q ss_pred cccCcchhhhhccCcEEEeccC-ceeEecC-----cEEE-----cCCceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 324 ITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVV-----DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~-----~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
+.++..+|+++-+. ....-.+ ++.+ .+-+. ++++-++++.|-.|+. .|+...
T Consensus 201 --------ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~d-l~v~GlFf~IGH~Pat--------~~l~gq 263 (322)
T KOG0404|consen 201 --------RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETD-LPVSGLFFAIGHSPAT--------KFLKGQ 263 (322)
T ss_pred --------HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccc-cccceeEEEecCCchh--------hHhcCc
Confidence 13345566666654 2222222 1222 23345 9999999999999994 444443
Q ss_pred hcCCCCCCccceeee-eeccCcccc
Q 014821 393 LAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
.--+.++.+.+-... .+++||+|.
T Consensus 264 ve~d~~GYi~t~pgts~TsvpG~FA 288 (322)
T KOG0404|consen 264 VELDEDGYIVTRPGTSLTSVPGVFA 288 (322)
T ss_pred eeeccCceEEeccCcccccccceee
Confidence 443667778777666 999999995
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=174.53 Aligned_cols=336 Identities=17% Similarity=0.181 Sum_probs=215.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC---CceEEEeeCCCCCccccc--cCCcceecCCccccccC--CCC-----CCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG---FHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS--DYP-----WPD--- 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~---~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~--~~~-----~~~--- 67 (418)
+++|+|||+|++|+.+|.+|.++. ..+.|||+...+|....+ ..|...+++|+..|+.. +.| |..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 479999999999999999999852 249999999999887666 66778899988777643 311 110
Q ss_pred ----------CCCCCCCChhHHHHHHHHHHHhcCcccc----eEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 68 ----------SVTTDFPDHNQVLDYIQSYASHFDLRKH----IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 68 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~----v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
.+...|+++..+.+|+.+....+-.... ....++++++.+.. +...
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~--------------------n~~~ 140 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT--------------------NAGG 140 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc--------------------CCce
Confidence 1257889999999999888766521111 23345666666653 2356
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCc-eEEeccCCCCchhhhhhhhcCCCEEEEEcCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQ 212 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G 212 (418)
|.++..++ ....||.+|+|||.. .|..+.. ..++.+ .-+.+..|.... ........+|+|+|+|
T Consensus 141 ~~~~~~~g-----~~~~ad~~Vlatgh~--~~~~~~~-----~~~~~~~~~~ia~~~~~~~---ld~v~~~drVli~Gsg 205 (474)
T COG4529 141 YLVTTADG-----PSEIADIIVLATGHS--APPADPA-----ARDLKGSPRLIADPYPANA---LDGVDADDRVLIVGSG 205 (474)
T ss_pred EEEecCCC-----CeeeeeEEEEeccCC--CCCcchh-----hhccCCCcceeccccCCcc---cccccCCCceEEecCC
Confidence 88887777 578999999999964 2322221 111211 112223332211 1245566679999999
Q ss_pred CCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCC--CCcchhhhhhHHH-------HHhhcCCCchhHHHHHHhhhh
Q 014821 213 KSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPW--GFPLAYLYLNRFA-------ELLVHKPGEGFLLSLLATMLS 283 (418)
Q Consensus 213 ~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~--g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 283 (418)
++.+|....|..++.. .+||+++|++ +.|..... ..|+.......+. ....-..........|+.++.
T Consensus 206 Lt~~D~v~~l~~~gh~-g~It~iSRrG--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D 282 (474)
T COG4529 206 LTSIDQVLVLRRRGHK-GPITAISRRG--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVD 282 (474)
T ss_pred chhHHHHHHHhccCCc-cceEEEeccc--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999887765 7899999998 33333311 1231111111110 000011112233334455555
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEecC--c--EEE---
Q 014821 284 PLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCED--G--IVV--- 356 (418)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~--~--v~~--- 356 (418)
.+|......|.++-........+++.|++..+.. ...+.+.....+.+.+|.++++.+.+..+... + |.+
T Consensus 283 ~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~---R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~r 359 (474)
T COG4529 283 GLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRF---RLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRER 359 (474)
T ss_pred hhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHh---hhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeecc
Confidence 6666666666665555555666778888777642 23455666777889999999999986655432 2 443
Q ss_pred -cCCceeeeccEEEEccCCCCCcc
Q 014821 357 -DGQTTPLKTDLVILATGFKGDVK 379 (418)
Q Consensus 357 -~~g~~~~~~D~Vi~atG~~~~~~ 379 (418)
.+.++++++|.||+|||..+...
T Consensus 360 g~~~~~~l~~~~VIn~~g~~~~~~ 383 (474)
T COG4529 360 GKQHEEELDVDAVINTTGPAHDNS 383 (474)
T ss_pred ccCccceeeeeEEEEcCCcCcCCC
Confidence 34555589999999999998754
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=197.60 Aligned_cols=166 Identities=23% Similarity=0.356 Sum_probs=106.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+|||+||..|++.|++|+|||+.+.+||......|..++ + .+..++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rl-----------------------p-~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRI-----------------------S-AESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCC-----------------------C-HHHHHH
Confidence 4799999999999999999999999999999998888876543332111 1 234444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+..+++ .+.++... . +.+... ....||+||+|||+.
T Consensus 593 ~ie~l~~~GV--e~~~g~~~------d--------------------------~~ve~l-----~~~gYDaVIIATGA~- 632 (1012)
T TIGR03315 593 DIELVKFHGV--EFKYGCSP------D--------------------------LTVAEL-----KNQGYKYVILAIGAW- 632 (1012)
T ss_pred HHHHHHhcCc--EEEEeccc------c--------------------------eEhhhh-----hcccccEEEECCCCC-
Confidence 4455556676 56664210 0 111111 235689999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+..+.++ |... .++....+.............+++|+|||+|.+|+|+|..+....+. ++|++++|+..
T Consensus 633 -~~~~l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga-~kVtLVyRr~~ 702 (1012)
T TIGR03315 633 -KHGPLRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRTK 702 (1012)
T ss_pred -CCCCCCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCC-ceEEEEEccCc
Confidence 24445555 5321 23333222110000001234589999999999999999988765222 36999999764
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=197.82 Aligned_cols=167 Identities=28% Similarity=0.331 Sum_probs=117.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+..|.. ....++.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~------------------------rlp~~vi~~ 361 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEF------------------------RLPNQLIDD 361 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCC------------------------cChHHHHHH
Confidence 47999999999999999999999999999999999998876543321 112456666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++.+|+ .+++++.+- ..+++.+. ....||+||||||+.
T Consensus 362 ~i~~l~~~Gv--~f~~n~~vG------------------------------~dit~~~l-----~~~~yDAV~LAtGA~- 403 (944)
T PRK12779 362 VVEKIKLLGG--RFVKNFVVG------------------------------KTATLEDL-----KAAGFWKIFVGTGAG- 403 (944)
T ss_pred HHHHHHhhcC--eEEEeEEec------------------------------cEEeHHHh-----ccccCCEEEEeCCCC-
Confidence 6667777888 677766541 12444333 245699999999985
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhh---------hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE---------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~ 233 (418)
.|+.+++| |.+. . .++...++...... .......+++|+|||+|.+|+|+|..+...|.. |+
T Consensus 404 -~pr~l~Ip---G~dl-~-GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~---Vt 474 (944)
T PRK12779 404 -LPTFMNVP---GEHL-L-GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN---VT 474 (944)
T ss_pred -CCCcCCCC---CCcC-c-CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE---EE
Confidence 57777787 6432 1 23333332210000 000123689999999999999999999988875 99
Q ss_pred EEEecCc
Q 014821 234 VLYRTEH 240 (418)
Q Consensus 234 ~~~r~~~ 240 (418)
+++|+..
T Consensus 475 lv~rr~~ 481 (944)
T PRK12779 475 IVYRRTK 481 (944)
T ss_pred EEEecCc
Confidence 9998764
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=193.50 Aligned_cols=198 Identities=20% Similarity=0.283 Sum_probs=117.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CCCCccccc--cCCcceecCCccccccCC-------CCCC-----C
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SDIGGAWIK--TVETTMLQTPKQLYQFSD-------YPWP-----D 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~~gg~~~~--~~~~~~l~~~~~~~~~~~-------~~~~-----~ 67 (418)
.+||+|||+|++|..+|..+++.|.+|+|||+. ..+||++.. +.|...+...+..++... +.+. .
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 589999999999999999999999999999974 368998776 777766554443322111 1010 0
Q ss_pred C---------C--CCCCCChhHHHHHHHHHHHhcC--ccc-----ceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 68 S---------V--TTDFPDHNQVLDYIQSYASHFD--LRK-----HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 68 ~---------~--~~~~~~~~~~~~~l~~~~~~~~--~~~-----~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
. + ...-.+...+.++.+...++.. ... .+..+++.+++.... . .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a--------------~f- 258 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--G--------------HI- 258 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--E--------------EE-
Confidence 0 0 0111244555555555444421 100 011122233333322 0 00
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEE
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVV 209 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv 209 (418)
.+..+|.+..+ + .++.+|+||||||+ .|.+|+++ +.+. ..++.+.+...+ ...+++|+||
T Consensus 259 -~~~~~v~v~~~--g--~~i~ad~lIIATGS---~P~~P~~~---~~~~--~~V~ts~d~~~l-------~~lpk~VvIV 318 (659)
T PTZ00153 259 -VDKNTIKSEKS--G--KEFKVKNIIIATGS---TPNIPDNI---EVDQ--KSVFTSDTAVKL-------EGLQNYMGIV 318 (659)
T ss_pred -ecCCeEEEccC--C--EEEECCEEEEcCCC---CCCCCCCC---CCCC--CcEEehHHhhhh-------hhcCCceEEE
Confidence 01122333211 1 47999999999995 57777654 3322 124433222221 1247899999
Q ss_pred cCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 210 GLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 210 G~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
|+|.+|+|+|..|...+.. |+++.+.+.
T Consensus 319 GgG~iGvE~A~~l~~~G~e---VTLIe~~~~ 346 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSE---VVSFEYSPQ 346 (659)
T ss_pred CCCHHHHHHHHHHHhCCCe---EEEEeccCc
Confidence 9999999999999888765 999999875
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=196.76 Aligned_cols=168 Identities=24% Similarity=0.399 Sum_probs=112.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+||+++|..|++.|++|+|||+.+.+||.+.+..|. +.++ .++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~rlp----------~~~~~~ 486 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPE--------------FRLP----------KKIVDV 486 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCC--------------CCCC----------HHHHHH
Confidence 4799999999999999999999999999999988888876542221 1111 244555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ ++++++.+. . .+++.+. ....||+||||||+.
T Consensus 487 ~~~~l~~~gv--~~~~~~~v~-----~-------------------------~v~~~~l-----~~~~ydavvlAtGa~- 528 (752)
T PRK12778 487 EIENLKKLGV--KFETDVIVG-----K-------------------------TITIEEL-----EEEGFKGIFIASGAG- 528 (752)
T ss_pred HHHHHHHCCC--EEECCCEEC-----C-------------------------cCCHHHH-----hhcCCCEEEEeCCCC-
Confidence 5555667787 677765431 1 1222222 246699999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchh-------hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-------EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
.|+.++++ |.+. ..+++..++..... ........+++|+|||+|.+|+|+|..+...|.. +|+++
T Consensus 529 -~~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~--~Vtlv 600 (752)
T PRK12778 529 -LPNFMNIP---GENS--NGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE--RVTIV 600 (752)
T ss_pred -CCCCCCCC---CCCC--CCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCC--eEEEe
Confidence 47777777 6442 12333332211000 0001234679999999999999999999887752 59999
Q ss_pred EecCc
Q 014821 236 YRTEH 240 (418)
Q Consensus 236 ~r~~~ 240 (418)
+|+..
T Consensus 601 ~r~~~ 605 (752)
T PRK12778 601 YRRSE 605 (752)
T ss_pred eecCc
Confidence 98764
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-20 Score=190.19 Aligned_cols=166 Identities=30% Similarity=0.438 Sum_probs=109.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+....+. +....++.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~------------------------~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPR------------------------FRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCC------------------------CCCCHHHHHH
Confidence 4799999999999999999999999999999999999887553221 1111345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++|+ ++.+++.+ +++ +++.+. ...||+||+|||+.
T Consensus 249 ~~~~l~~~Gv--~i~~~~~v-~~d-----------------------------v~~~~~------~~~~DaVilAtGa~- 289 (652)
T PRK12814 249 DIAPLRAMGA--EFRFNTVF-GRD-----------------------------ITLEEL------QKEFDAVLLAVGAQ- 289 (652)
T ss_pred HHHHHHHcCC--EEEeCCcc-cCc-----------------------------cCHHHH------HhhcCEEEEEcCCC-
Confidence 5556667787 67766543 110 111111 23499999999975
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+..+.++ |.+. . .++....+..... .......+++|+|||+|.+|+|+|..+...+. ++|++++|+..
T Consensus 290 -~~~~~~ip---G~~~-~-gv~~~~~~l~~~~-~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga--~~Vtlv~r~~~ 358 (652)
T PRK12814 290 -KASKMGIP---GEEL-P-GVISGIDFLRNVA-LGTALHPGKKVVVIGGGNTAIDAARTALRLGA--ESVTILYRRTR 358 (652)
T ss_pred -CCCCCCCC---CcCc-C-CcEeHHHHHHHhh-cCCcccCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecCc
Confidence 23455566 5432 1 2333222211000 00123568999999999999999999888765 35999998874
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=171.71 Aligned_cols=261 Identities=16% Similarity=0.230 Sum_probs=180.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
...++|||+|++|..|+..+++.+. +++++-+...+- --+.+.+..++.. ...+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-ydr~~Ls~~~~~~----------------------~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-YDRARLSKFLLTV----------------------GEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-ccchhcccceeec----------------------ccccc
Confidence 4679999999999999999999876 677776543110 0000111111111 11222
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
....++.+.++. .+++++.|+.++... .+|.+.++ +++.|++++||||+
T Consensus 131 ~r~~e~Yke~gI--e~~~~t~v~~~D~~~------------------------K~l~~~~G-----e~~kys~LilATGs 179 (478)
T KOG1336|consen 131 KRTPEFYKEKGI--ELILGTSVVKADLAS------------------------KTLVLGNG-----ETLKYSKLIIATGS 179 (478)
T ss_pred ccChhhHhhcCc--eEEEcceeEEeeccc------------------------cEEEeCCC-----ceeecceEEEeecC
Confidence 233334566788 899999999999876 57888888 79999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhh--hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|..|+++ |.+.. ++.. +++..+. ..........|+++|+|..|+|+|.+|...+.. ||++++.
T Consensus 180 ---~~~~l~~p---G~~~~--nv~~---ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e 245 (478)
T KOG1336|consen 180 ---SAKTLDIP---GVELK--NVFY---LREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPE 245 (478)
T ss_pred ---ccccCCCC---Ccccc--ceee---eccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCce---EEEEccC
Confidence 47777777 66521 2222 2322222 223444578899999999999999999988655 9999987
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+ |+.++..
T Consensus 246 ~-~~~~~lf----------------------------------------------------------------------- 253 (478)
T KOG1336|consen 246 P-WLLPRLF----------------------------------------------------------------------- 253 (478)
T ss_pred c-cchhhhh-----------------------------------------------------------------------
Confidence 7 4444321
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecCc------EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG------IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~------v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
.+.+...+.+.+++.+|+++.+. +..++... |.+.||++ +++|.||+++|.+|+.+ ++..
T Consensus 254 ----~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~-l~adlvv~GiG~~p~t~--------~~~~ 320 (478)
T KOG1336|consen 254 ----GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT-LEADLVVVGIGIKPNTS--------FLEK 320 (478)
T ss_pred ----hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCE-eccCeEEEeeccccccc--------cccc
Confidence 01122334567788889999987 56665432 77899999 99999999999999943 3332
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
...-+..|.++++..+.+++||||.
T Consensus 321 g~~~~~~G~i~V~~~f~t~~~~VyA 345 (478)
T KOG1336|consen 321 GILLDSKGGIKVDEFFQTSVPNVYA 345 (478)
T ss_pred cceecccCCEeehhceeeccCCccc
Confidence 2222778999999999888999995
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=172.55 Aligned_cols=281 Identities=16% Similarity=0.151 Sum_probs=169.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++++|||+|+|++|.++++.|-..-++|++++++.. |...|+.+..+.....-..+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny----------------------FlFTPLLpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY----------------------FLFTPLLPSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccc----------------------eEEeeccCCccccceeehhhhh
Confidence 468999999999999999999999999999999862 3333333222222223334444
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec--CCC-CceeEEEeCEEEEee
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED--AKN-HSTEVHQVDFVILCV 158 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~~~~i~~d~vIlAt 158 (418)
-++..+++.... .-++..+...+++.. -.|+++. .++ ..+..+.||+||+|+
T Consensus 112 PIr~i~r~k~~~-~~y~eAec~~iDp~~------------------------k~V~~~s~t~~~~~~e~~i~YDyLViA~ 166 (491)
T KOG2495|consen 112 PIRAIARKKNGE-VKYLEAECTKIDPDN------------------------KKVHCRSLTADSSDKEFVIGYDYLVIAV 166 (491)
T ss_pred hHHHHhhccCCC-ceEEecccEeecccc------------------------cEEEEeeeccCCCcceeeecccEEEEec
Confidence 455454443321 345567777877765 2344433 222 456789999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceE----------EeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKV----------IHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
|+.+..+.+|++. ....|...+ +++.+.....+-.+++..+-.+++|||||++|+|+|.+|+..-.+
T Consensus 167 GA~~~TFgipGV~---e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~ 243 (491)
T KOG2495|consen 167 GAEPNTFGIPGVE---ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPE 243 (491)
T ss_pred cCCCCCCCCCchh---hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHH
Confidence 9886666666433 221221111 111111111100112233345799999999999999999876322
Q ss_pred -----------CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 229 -----------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 229 -----------~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
.-+||++.-.+. +...+++.+..+.
T Consensus 244 Dl~k~yp~l~~~i~vtLiEA~d~--------------------------------------------iL~mFdkrl~~ya 279 (491)
T KOG2495|consen 244 DLRKIYPELKKDIKVTLIEAADH--------------------------------------------ILNMFDKRLVEYA 279 (491)
T ss_pred HHHHhhhcchhheEEEeeccchh--------------------------------------------HHHHHHHHHHHHH
Confidence 112333332221 1222222222222
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCC----ceeeeccEEEEcc
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQ----TTPLKTDLVILAT 372 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g----~~~~~~D~Vi~at 372 (418)
.+++.+.+|+++.+. +..++++.++.+.+ ++ +++..+||+|
T Consensus 280 ---------------------------------e~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~-iPYG~lVWat 325 (491)
T KOG2495|consen 280 ---------------------------------ENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEE-IPYGLLVWAT 325 (491)
T ss_pred ---------------------------------HHHhhhccceeecccEEEeecCcEEEEEcCCCceee-ecceEEEecC
Confidence 134566678888886 78888888877654 45 9999999999
Q ss_pred CCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 373 GFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 373 G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|..+.+-...+.. + +-+.+..++.++.-+ +++.+|||.
T Consensus 326 G~~~rp~~k~lm~-~-----i~e~~rr~L~vDE~LrV~G~~nvfA 364 (491)
T KOG2495|consen 326 GNGPRPVIKDLMK-Q-----IDEQGRRGLAVDEWLRVKGVKNVFA 364 (491)
T ss_pred CCCCchhhhhHhh-c-----CCccCceeeeeeceeeccCcCceEE
Confidence 9998842222111 1 111223478888888 999999984
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=172.02 Aligned_cols=182 Identities=22% Similarity=0.275 Sum_probs=109.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+++|..|++.|.++++||+.+.+||.+...++. . ..+...+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~----------------------~-~~~~~~~~~~ 74 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPE----------------------F-RIPIERVREG 74 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcc----------------------c-ccCHHHHHHH
Confidence 3699999999999999999999999999999998887765432111 0 0112344444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++.+. +.++ .++.++.+..+.... . . ..+.+....... ....+.||+||+|||+.
T Consensus 75 ~~~l~-~~~i--~~~~~~~v~~~~~~~--~-~---------------~~~~~~~~~~~~---~~~~~~~d~lviAtGs~- 129 (352)
T PRK12770 75 VKELE-EAGV--VFHTRTKVCCGEPLH--E-E---------------EGDEFVERIVSL---EELVKKYDAVLIATGTW- 129 (352)
T ss_pred HHHHH-hCCe--EEecCcEEeeccccc--c-c---------------cccccccccCCH---HHHHhhCCEEEEEeCCC-
Confidence 44444 3476 677777765543310 0 0 011122111111 01247899999999963
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCC-------CCc-hhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDY-------SDM-DYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|..|+++ |.+. ..++.+..+ ... ..........+++|+|||+|.+|+|+|..|...+.. +|++
T Consensus 130 -~~~~~~ip---g~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~--~Vtv 201 (352)
T PRK12770 130 -KSRKLGIP---GEDL--PGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAE--KVYL 201 (352)
T ss_pred -CCCcCCCC---Cccc--cCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEE
Confidence 36667777 5432 122222110 000 000000123478999999999999999999876542 4999
Q ss_pred EEecCc
Q 014821 235 LYRTEH 240 (418)
Q Consensus 235 ~~r~~~ 240 (418)
+.|+..
T Consensus 202 i~~~~~ 207 (352)
T PRK12770 202 AYRRTI 207 (352)
T ss_pred Eeecch
Confidence 998653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=183.53 Aligned_cols=171 Identities=22% Similarity=0.334 Sum_probs=110.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|..+ ...++..+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~------------------------l~~~~~~~ 382 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFK------------------------LDKSLLAR 382 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCcc------------------------CCHHHHHH
Confidence 479999999999999999999999999999999999987665333211 11345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++|+ .+.+++.+.. . +++.+. ...||.||+|||+.
T Consensus 383 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------i~~~~~------~~~~DavilAtGa~- 423 (654)
T PRK12769 383 RREIFSAMGI--EFELNCEVGK----D--------------------------ISLESL------LEDYDAVFVGVGTY- 423 (654)
T ss_pred HHHHHHHCCe--EEECCCEeCC----c--------------------------CCHHHH------HhcCCEEEEeCCCC-
Confidence 5566677787 6777765521 0 111111 23599999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCC--------Cchhh--hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
.+..+.++ +.+. . .++....+. ..... .......+++|+|||+|.+|+|+|..+...+. ++|
T Consensus 424 -~~~~l~i~---g~~~-~-Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga--~~V 495 (654)
T PRK12769 424 -RSMKAGLP---NEDA-P-GVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA--SNV 495 (654)
T ss_pred -CCCCCCCC---CCCC-C-CeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 34445555 4332 1 122211110 00000 00012457899999999999999988888775 259
Q ss_pred EEEEecCccccc
Q 014821 233 TVLYRTEHWNIP 244 (418)
Q Consensus 233 ~~~~r~~~~~~~ 244 (418)
++++|+.....|
T Consensus 496 t~i~~~~~~~~~ 507 (654)
T PRK12769 496 TCAYRRDEANMP 507 (654)
T ss_pred EEeEecCCCCCC
Confidence 999987653333
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-19 Score=189.40 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=112.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+|||++|..|++.|++|+|||+.+.+||......|. +....++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~------------------------~rl~~e~~~~ 485 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPS------------------------FRLPRDIIDR 485 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCc------------------------cCCCHHHHHH
Confidence 4789999999999999999999999999999998888765442221 1122456666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++|+ ++++++.+ +. . +++.+.. ....||+||||||+.
T Consensus 486 ~~~~l~~~Gv--~~~~~~~v-g~---~--------------------------~~~~~l~----~~~~yDaViIATGa~- 528 (1006)
T PRK12775 486 EVQRLVDIGV--KIETNKVI-GK---T--------------------------FTVPQLM----NDKGFDAVFLGVGAG- 528 (1006)
T ss_pred HHHHHHHCCC--EEEeCCcc-CC---c--------------------------cCHHHHh----hccCCCEEEEecCCC-
Confidence 6667778888 77776533 11 1 1111110 024589999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchh--------hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY--------EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|+.++++ |.+. +.+++..++..... ........+++|+|||+|.+|+|+|..+...|.. .|++
T Consensus 529 -~pr~l~Ip---G~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~--~Vti 600 (1006)
T PRK12775 529 -APTFLGIP---GEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAP--TVRC 600 (1006)
T ss_pred -CCCCCCCC---CcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCC--EEEE
Confidence 47777777 6431 23444433221100 0001234689999999999999999888877653 5899
Q ss_pred EEecCc
Q 014821 235 LYRTEH 240 (418)
Q Consensus 235 ~~r~~~ 240 (418)
++|+..
T Consensus 601 v~rr~~ 606 (1006)
T PRK12775 601 VYRRSE 606 (1006)
T ss_pred EeecCc
Confidence 988754
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=175.75 Aligned_cols=164 Identities=24% Similarity=0.298 Sum_probs=104.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+....+. +....++...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~~ 198 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPD------------------------FKLEKEVIDR 198 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCc------------------------ccCCHHHHHH
Confidence 3799999999999999999999999999999998888776542221 1111345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ .+.+++.+.. + +.... ....||+||+|||+.
T Consensus 199 ~~~~~~~~gv--~~~~~~~v~~-~-----------------------------~~~~~------~~~~~d~vvlAtGa~- 239 (471)
T PRK12810 199 RIELMEAEGI--EFRTNVEVGK-D-----------------------------ITAEE------LLAEYDAVFLGTGAY- 239 (471)
T ss_pred HHHHHHhCCc--EEEeCCEECC-c-----------------------------CCHHH------HHhhCCEEEEecCCC-
Confidence 5556677787 6777665421 1 00001 134699999999975
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCc-----h-h-hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDM-----D-Y-EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
.|..+.++ |.+. ..+....++... . . ........+++|+|||+|.+|+|+|..+...+.. +|+.+
T Consensus 240 -~~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~--~Vt~~ 311 (471)
T PRK12810 240 -KPRDLGIP---GRDL--DGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK--SVTQR 311 (471)
T ss_pred -CCCcCCCC---CccC--CCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEc
Confidence 35566666 5432 123332111100 0 0 0001234689999999999999999888777652 47754
Q ss_pred Ee
Q 014821 236 YR 237 (418)
Q Consensus 236 ~r 237 (418)
.+
T Consensus 312 ~~ 313 (471)
T PRK12810 312 DI 313 (471)
T ss_pred cc
Confidence 43
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=174.52 Aligned_cols=171 Identities=25% Similarity=0.407 Sum_probs=111.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+++|..|++.|++++|+|+.+.+||.+...+|.. ....++.++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~------------------------~~~~~~~~~ 196 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF------------------------KLDKAVLSR 196 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc------------------------cCCHHHHHH
Confidence 37899999999999999999999999999999998888765433221 111355666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++|+ .+++++.+.. . +.+.+ ....||.||+|||+..
T Consensus 197 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------~~~~~------~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 197 RREIFTAMGI--EFHLNCEVGR----D--------------------------ISLDD------LLEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHHHHHCCC--EEECCCEeCC----c--------------------------cCHHH------HHhcCCEEEEEeCCCC
Confidence 6677778888 7887776521 0 11111 1246999999999762
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCC--------Cch--hhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMD--YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
+..++++ |.+. ..+.+...+. ... .........+++++|||+|.+|+|+|..+...+.. +|
T Consensus 239 --~~~~~i~---g~~~--~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~--~V 309 (467)
T TIGR01318 239 --SMRGGLP---GEDA--PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAA--SV 309 (467)
T ss_pred --CCcCCCC---CcCC--CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCC--eE
Confidence 2334455 5432 1133221110 000 00000123579999999999999999998887742 49
Q ss_pred EEEEecCccccc
Q 014821 233 TVLYRTEHWNIP 244 (418)
Q Consensus 233 ~~~~r~~~~~~~ 244 (418)
++++|++...+|
T Consensus 310 tvv~r~~~~~~~ 321 (467)
T TIGR01318 310 TCAYRRDEANMP 321 (467)
T ss_pred EEEEecCcccCC
Confidence 999998754333
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=155.03 Aligned_cols=263 Identities=17% Similarity=0.230 Sum_probs=182.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+||||||+|.++|.+.+++|++.-++-. ++||.-..+..-- .|- ...+....++...
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IE---------NfI--------sv~~teGpkl~~a 271 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIE---------NFI--------SVPETEGPKLAAA 271 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchh---------hee--------ccccccchHHHHH
Confidence 48999999999999999999999998777654 3676544422110 011 1222345688889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
|++..++|.+ .+.--.+++++++..- .++...|++.++ -.++++.||+|||+.+
T Consensus 272 le~Hv~~Y~v--Dimn~qra~~l~~a~~-------------------~~~l~ev~l~nG-----avLkaktvIlstGArW 325 (520)
T COG3634 272 LEAHVKQYDV--DVMNLQRASKLEPAAV-------------------EGGLIEVELANG-----AVLKARTVILATGARW 325 (520)
T ss_pred HHHHHhhcCc--hhhhhhhhhcceecCC-------------------CCccEEEEecCC-----ceeccceEEEecCcch
Confidence 9999999988 5665567778877530 135688999988 4899999999999763
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
+-..+| |.++|...-+-.|..|+ ...+++|+|+|||+|.||+|+|-.|+.--.+ ||++.=.+..
T Consensus 326 ---Rn~nvP---GE~e~rnKGVayCPHCD------GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~h---VtllEF~~eL- 389 (520)
T COG3634 326 ---RNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEL- 389 (520)
T ss_pred ---hcCCCC---chHHHhhCCeeeCCCCC------CcccCCceEEEECCCcchHHHHHhHHhhhhe---eeeeecchhh-
Confidence 334455 88888766666555555 5679999999999999999999999876554 8887633320
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .| .. +
T Consensus 390 ----k-----AD------------------------------------~V----L------------------------- 395 (520)
T COG3634 390 ----K-----AD------------------------------------AV----L------------------------- 395 (520)
T ss_pred ----h-----hH------------------------------------HH----H-------------------------
Confidence 0 00 00 0
Q ss_pred ccccCcchhhhhc-cCcEEEeccC-ceeEecCc-----EEEc---CCce-eeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVE-EGSIILKKSQ-DFSFCEDG-----IVVD---GQTT-PLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~~~-----v~~~---~g~~-~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
.+.++ -.+++++.+. -..+.+++ +... +|+. -++-+-|+.-.|.-|+ +.||..
T Consensus 396 --------q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PN--------T~WLkg 459 (520)
T COG3634 396 --------QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPN--------TEWLKG 459 (520)
T ss_pred --------HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccC--------hhHhhc
Confidence 11111 2457777765 55665542 3332 3433 2567779999999999 688888
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..--...|.+.+...-.+++||+|.
T Consensus 460 ~vel~~rGEIivD~~g~TsvpGvFA 484 (520)
T COG3634 460 AVELNRRGEIIVDARGETNVPGVFA 484 (520)
T ss_pred hhhcCcCccEEEecCCCcCCCceee
Confidence 7654557778888888999999995
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=181.82 Aligned_cols=241 Identities=16% Similarity=0.131 Sum_probs=150.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||+|||+||..|++.|.+++|+|+.+.+||.+...... ..-.+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~----------------------~~g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAET----------------------IDGKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccc----------------------cCCccHHHHHHH
Confidence 4799999999999999999999999999999999898876542100 000112344333
Q ss_pred HHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE-Ee-------cC-CCCceeEEEeC
Q 014821 83 IQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA-VE-------DA-KNHSTEVHQVD 152 (418)
Q Consensus 83 l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~~-~~~~~~~i~~d 152 (418)
+.+.+..++ + .+..++.|.++.... ....+. .. .+ ..+....+.+|
T Consensus 221 ~~~~l~~~~~v--~v~~~t~V~~i~~~~----------------------~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 221 TVAELTAMPEV--TLLPRTTAFGYYDHN----------------------TVGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred HHHHHhcCCCc--EEEcCCEEEEEecCC----------------------eEEEEEEeeeccccccCCccccceEEEEcC
Confidence 444444443 5 677788888875422 000010 00 00 00112368999
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
.||||||+. +..|+++ |.+. . .++......... .......+++|+|||+|.+|+|+|..|...+.. .|
T Consensus 277 ~VILATGa~---~r~~pip---G~~~-p-gV~~~~~~~~~l--~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~--vV 344 (985)
T TIGR01372 277 RVVLATGAH---ERPLVFA---NNDR-P-GVMLAGAARTYL--NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIA--VV 344 (985)
T ss_pred EEEEcCCCC---CcCCCCC---CCCC-C-CcEEchHHHHHH--HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc--eE
Confidence 999999965 6667777 5432 1 222211111100 001224689999999999999999999988743 36
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++.+.+. +.+
T Consensus 345 ~vv~~~~~-~~~-------------------------------------------------------------------- 355 (985)
T TIGR01372 345 AIIDARAD-VSP-------------------------------------------------------------------- 355 (985)
T ss_pred EEEccCcc-hhH--------------------------------------------------------------------
Confidence 77765432 000
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEc----CCceeeeccEEEEccCCCCCcchhcc
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVD----GQTTPLKTDLVILATGFKGDVKLKNI 383 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~----~g~~~~~~D~Vi~atG~~~~~~~~~~ 383 (418)
.+.+.+++.+|+++.+. +..+..+ +|++. ++++ +++|.|++++|+.|+..+...
T Consensus 356 ----------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~-i~~D~V~va~G~~Pnt~L~~~ 418 (985)
T TIGR01372 356 ----------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQR-LEADALAVSGGWTPVVHLFSQ 418 (985)
T ss_pred ----------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEE-EECCEEEEcCCcCchhHHHHh
Confidence 01224455667888776 6666543 34554 3456 999999999999999877665
Q ss_pred ccch
Q 014821 384 FLSQ 387 (418)
Q Consensus 384 l~~~ 387 (418)
++..
T Consensus 419 lg~~ 422 (985)
T TIGR01372 419 RGGK 422 (985)
T ss_pred cCCC
Confidence 5443
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-18 Score=167.55 Aligned_cols=209 Identities=19% Similarity=0.217 Sum_probs=133.7
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE--eCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ--VDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~--~d~vIlAtG~~ 161 (418)
+.+..++++ .++++++|+.++... ..|.+.+..++ .++. ||+||+|||+
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~~~~~~--~~~~~~yd~lIiATG~- 101 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVNDER------------------------QTVVVRNNKTN--ETYEESYDYLILSPGA- 101 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEECCC------------------------CEEEEEECCCC--CEEecCCCEEEECCCC-
Confidence 344567788 788889999998755 34555443212 3566 9999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhh--hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAAN--LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|+++ |.+. ..++......... ..... ...+++|+|||+|.+|+|+|..|...+.. |+++.+++
T Consensus 102 --~p~~~~i~---G~~~--~~v~~~~~~~~~~-~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~ 170 (427)
T TIGR03385 102 --SPIVPNIE---GINL--DIVFTLRNLEDTD-AIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSE 170 (427)
T ss_pred --CCCCCCCC---CcCC--CCEEEECCHHHHH-HHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCc
Confidence 57777777 6541 1233322211100 00011 14578999999999999999999887765 99999877
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
....+... ..
T Consensus 171 ~~~~~~~~-----------~~----------------------------------------------------------- 180 (427)
T TIGR03385 171 RILNKLFD-----------EE----------------------------------------------------------- 180 (427)
T ss_pred ccCccccC-----------HH-----------------------------------------------------------
Confidence 53222111 00
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEecCc--EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCC
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG--IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGS 396 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~ 396 (418)
+.+.+.+.+++.+|+++.+. +..++.++ +.+.+|++ +++|.||+|+|++++.++++.++... +
T Consensus 181 ------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~~~gl~~-------~ 246 (427)
T TIGR03385 181 ------MNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGV-YQADMVILATGIKPNSELAKDSGLKL-------G 246 (427)
T ss_pred ------HHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCE-EEeCEEEECCCccCCHHHHHhcCccc-------C
Confidence 00111234455678888765 77776544 36778888 99999999999999954433322221 3
Q ss_pred CCCCccceeeeeeccCcccc
Q 014821 397 PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ 416 (418)
.++.+.++..+.++.|+||.
T Consensus 247 ~~G~i~vd~~~~t~~~~Vya 266 (427)
T TIGR03385 247 ETGAIWVNEKFQTSVPNIYA 266 (427)
T ss_pred CCCCEEECCCcEeCCCCEEE
Confidence 45678887777778999985
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=164.02 Aligned_cols=266 Identities=16% Similarity=0.173 Sum_probs=175.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|.+.++||||.|++|..+...+++ .-+++++|...+++. |.-.++.. . ...--+.+
T Consensus 1 m~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n------Y~Ri~Ls~---------v------l~~~~~~e 59 (793)
T COG1251 1 MKKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN------YNRILLSS---------V------LAGEKTAE 59 (793)
T ss_pred CCceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc------ccceeecc---------c------cCCCccHH
Confidence 778899999999999999999998 346899998866332 22222211 0 00001223
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++.-.-.++.++.++ +++.+.+|+.|+++. ..|+...+ .++.||.||+|
T Consensus 60 di~l~~~dwy~~~~i--~L~~~~~v~~idr~~------------------------k~V~t~~g-----~~~~YDkLilA 108 (793)
T COG1251 60 DISLNRNDWYEENGI--TLYTGEKVIQIDRAN------------------------KVVTTDAG-----RTVSYDKLIIA 108 (793)
T ss_pred HHhccchhhHHHcCc--EEEcCCeeEEeccCc------------------------ceEEccCC-----cEeecceeEEe
Confidence 343334455677788 899999999999877 56887777 79999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
|| +.|.+|++| |.+.+ .++-...+.++.- ........++-+|||+|+-|+|+|..|...|-+ +++++-
T Consensus 109 TG---S~pfi~PiP---G~~~~--~v~~~R~i~D~~a-m~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~---~~Vvh~ 176 (793)
T COG1251 109 TG---SYPFILPIP---GSDLP--GVFVYRTIDDVEA-MLDCARNKKKAVVIGGGLLGLEAARGLKDLGME---VTVVHI 176 (793)
T ss_pred cC---ccccccCCC---CCCCC--CeeEEecHHHHHH-HHHHHhccCCcEEEccchhhhHHHHHHHhCCCc---eEEEee
Confidence 99 558888888 76543 2333222222111 112233455689999999999999999998876 888775
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+. ++. +-++....++++
T Consensus 177 ~~~-lMe------------------------------------------rQLD~~ag~lL~------------------- 194 (793)
T COG1251 177 APT-LME------------------------------------------RQLDRTAGRLLR------------------- 194 (793)
T ss_pred cch-HHH------------------------------------------HhhhhHHHHHHH-------------------
Confidence 552 111 111111122221
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEe----cCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC----EDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~----~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
..+++..++++.+. ...+. ..++.++||+. +++|.||+|+|++|+..++..-
T Consensus 195 --------------~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~-i~ad~VV~a~GIrPn~ela~~a-------- 251 (793)
T COG1251 195 --------------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTE-IPADLVVMAVGIRPNDELAKEA-------- 251 (793)
T ss_pred --------------HHHHhhcceeecccchhhhhcCcceeeEeecCCCc-ccceeEEEecccccccHhHHhc--------
Confidence 23344445555543 22222 24689999999 9999999999999995544433
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++ ..+.++.++..|.++.|+||.
T Consensus 252 Gl-avnrGIvvnd~mqTsdpdIYA 274 (793)
T COG1251 252 GL-AVNRGIVVNDYMQTSDPDIYA 274 (793)
T ss_pred Cc-CcCCCeeecccccccCCCeee
Confidence 33 233488899999999999985
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=151.29 Aligned_cols=198 Identities=17% Similarity=0.242 Sum_probs=122.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCC-CCCC---CCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDY-PWPD---SVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~-~~~~---~~~~~~~~~ 76 (418)
.+|++|||+||+|..||...++.|++.+++|++..+||++.. +.|+..|-..+..|+.... .+.. +....-.+.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 489999999999999999999999999999999999999888 7777766666665554433 1110 001111223
Q ss_pred hHHHHHHHHHHHhc--CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 77 NQVLDYIQSYASHF--DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 77 ~~~~~~l~~~~~~~--~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
..++......++.+ ++. ..+-..+|+-+.... .+...+ .|.+... ++....+.++++
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~g-----------------sf~~p~--~V~v~k~-dg~~~ii~aKnI 177 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFG-----------------SFLDPN--KVSVKKI-DGEDQIIKAKNI 177 (506)
T ss_pred HHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeE-----------------eecCCc--eEEEecc-CCCceEEeeeeE
Confidence 34444443333333 110 111223344333322 000012 2333322 245679999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 155 ILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 155 IlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
|+|||+. ++..|.+ .--...++.|---.. -..-+++++|||+|.+|+|+..-..+.|.+ ||+
T Consensus 178 iiATGSe--V~~~PGI------~IDekkIVSStgALs-------L~~vPk~~~viG~G~IGLE~gsV~~rLGse---VT~ 239 (506)
T KOG1335|consen 178 IIATGSE--VTPFPGI------TIDEKKIVSSTGALS-------LKEVPKKLTVIGAGYIGLEMGSVWSRLGSE---VTV 239 (506)
T ss_pred EEEeCCc--cCCCCCe------EecCceEEecCCccc-------hhhCcceEEEEcCceeeeehhhHHHhcCCe---EEE
Confidence 9999964 5556644 322223343332222 225589999999999999999888888876 998
Q ss_pred EEecC
Q 014821 235 LYRTE 239 (418)
Q Consensus 235 ~~r~~ 239 (418)
+.--+
T Consensus 240 VEf~~ 244 (506)
T KOG1335|consen 240 VEFLD 244 (506)
T ss_pred EEehh
Confidence 87443
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=161.38 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=109.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHh--CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL--KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~--~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
.++|+||||||||+.+|..|++ .|++|+|||+.+.+||..++.. .+.++....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHHH
Confidence 4789999999999999999997 6899999999998888665421 11223334556
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
..+.+.....++ .++.|..+- . .+++.+- ...||.||+|||+
T Consensus 83 ~~~~~~~~~~~v--~~~~nv~vg-----~-------------------------dvtl~~L------~~~yDaVIlAtGa 124 (491)
T PLN02852 83 NQFSRVATDDRV--SFFGNVTLG-----R-------------------------DVSLSEL------RDLYHVVVLAYGA 124 (491)
T ss_pred HHHHHHHHHCCe--EEEcCEEEC-----c-------------------------cccHHHH------hhhCCEEEEecCC
Confidence 666666666565 444444331 1 1222222 2469999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchh------hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh---------
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY------EAAANLVKGKRVTVVGLQKSALDIAMECTTA--------- 225 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~--------- 225 (418)
.. +..++++ |.+. ..++...++..+.. ........+++|+|||+|.+|+|+|..|...
T Consensus 125 ~~--~~~l~Ip---G~d~--~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi 197 (491)
T PLN02852 125 ES--DRRLGIP---GEDL--PGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDI 197 (491)
T ss_pred CC--CCCCCCC---CCCC--CCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccc
Confidence 52 3556666 5431 12443333211000 0001223589999999999999999998764
Q ss_pred -----------cCCCCCeEEEEecCc
Q 014821 226 -----------NGLENPCTVLYRTEH 240 (418)
Q Consensus 226 -----------~~~~~~V~~~~r~~~ 240 (418)
+. ++|+++.|++.
T Consensus 198 ~~~~l~~l~~~~~--~~V~iv~RRg~ 221 (491)
T PLN02852 198 AEHALEALRGSSV--RKVYLVGRRGP 221 (491)
T ss_pred cHHHHHHHhhCCC--CEEEEEEcCCh
Confidence 22 46999999884
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=170.94 Aligned_cols=168 Identities=24% Similarity=0.364 Sum_probs=111.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++||++|..|++.|++|+|||+.+.+||.|.+..|..++ + ..+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l-----------------------~-~~~~~~ 365 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL-----------------------D-KTVLSQ 365 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC-----------------------C-HHHHHH
Confidence 4789999999999999999999999999999999999887764432111 1 345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+..+|+ .+++++++.. . +++.+ ....+|.|++|||+.
T Consensus 366 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------~~~~~------l~~~~DaV~latGa~- 406 (639)
T PRK12809 366 RREIFTAMGI--DFHLNCEIGR----D--------------------------ITFSD------LTSEYDAVFIGVGTY- 406 (639)
T ss_pred HHHHHHHCCe--EEEcCCccCC----c--------------------------CCHHH------HHhcCCEEEEeCCCC-
Confidence 5566777888 7777765521 1 11111 124589999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCC--------Cchh--hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDY--EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
.+..+.++ |.+. . .+++...+. .... ........+++|+|||+|.+|+|.|..+...|. ++|
T Consensus 407 -~~~~~~i~---g~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga--~~V 478 (639)
T PRK12809 407 -GMMRADLP---HEDA-P-GVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA--ASV 478 (639)
T ss_pred -CCCCCCCC---CCcc-C-CcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 34455566 5432 1 122211110 0000 000122468999999999999999988877775 259
Q ss_pred EEEEecCcc
Q 014821 233 TVLYRTEHW 241 (418)
Q Consensus 233 ~~~~r~~~~ 241 (418)
++++|+...
T Consensus 479 t~v~rr~~~ 487 (639)
T PRK12809 479 TCAYRRDEV 487 (639)
T ss_pred EEeeecCcc
Confidence 999997643
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=146.54 Aligned_cols=197 Identities=18% Similarity=0.248 Sum_probs=132.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC--CCCCccccccCCcceecC---Ccccccc-----------CCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR--SDIGGAWIKTVETTMLQT---PKQLYQF-----------SDYPWP 66 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~--~~~gg~~~~~~~~~~l~~---~~~~~~~-----------~~~~~~ 66 (418)
.+|++|||||.+||++|+.++..|.+|.++|-- .-.|..|-- .++.+++ |+.+|+- ..+.|.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl--GGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL--GGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc--CceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 589999999999999999999999999998832 224444433 3333332 5555532 134455
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 67 DSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
......-+++..+.+..+...+..+. -.+..-+=..+.+.+. =..+ .+...+...+. .++.
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW--~yRv~LreKkV~Y~Ns--------------ygeF--v~~h~I~at~~-~gk~ 157 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNW--GYRVQLREKKVEYINS--------------YGEF--VDPHKIKATNK-KGKE 157 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccc--eEEEEeccceeeeeec--------------ceee--cccceEEEecC-CCce
Confidence 43234566778888888888887765 2332222223333220 0000 01123333332 2456
Q ss_pred eEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 147 EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 147 ~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
+.+.++.+|+||| .+|++|++| |..+| .+.|.++..+. +.+.+-+|||+|+.|.|.|..|...|
T Consensus 158 ~~~ta~~fvIatG---~RPrYp~Ip---G~~Ey---~ITSDDlFsl~-------~~PGkTLvVGa~YVaLECAgFL~gfg 221 (503)
T KOG4716|consen 158 RFLTAENFVIATG---LRPRYPDIP---GAKEY---GITSDDLFSLP-------YEPGKTLVVGAGYVALECAGFLKGFG 221 (503)
T ss_pred EEeecceEEEEec---CCCCCCCCC---Cceee---eeccccccccc-------CCCCceEEEccceeeeehhhhHhhcC
Confidence 7899999999999 679999999 87665 56666666543 55677889999999999999999999
Q ss_pred CCCCCeEEEEecC
Q 014821 227 GLENPCTVLYRTE 239 (418)
Q Consensus 227 ~~~~~V~~~~r~~ 239 (418)
.+ |+++.|+=
T Consensus 222 ~~---vtVmVRSI 231 (503)
T KOG4716|consen 222 YD---VTVMVRSI 231 (503)
T ss_pred CC---cEEEEEEe
Confidence 87 99999874
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=168.97 Aligned_cols=165 Identities=24% Similarity=0.359 Sum_probs=104.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++||++|..|++.|++|+|+|+.+.+||.+....+..+ + + .++...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~----------------------~-~-~~~~~~ 192 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYR----------------------L-P-REVLDA 192 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCcc----------------------C-C-HHHHHH
Confidence 368999999999999999999999999999999999987655332211 1 1 234444
Q ss_pred HHHHHHhcCcccceEeeeEE-EEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKV-VGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
-...+.+++. .+.+++.+ .++.... ....+|+||+|+|+.
T Consensus 193 ~l~~~~~~Gv--~~~~~~~~~~~~~~~~-------------------------------------~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 193 EIQRILDLGV--EVRLGVRVGEDITLEQ-------------------------------------LEGEFDAVFVAIGAQ 233 (564)
T ss_pred HHHHHHHCCC--EEEeCCEECCcCCHHH-------------------------------------HHhhCCEEEEeeCCC
Confidence 4445566787 66666554 2211110 012489999999976
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
. +..+.++ +.+. +.+++...+.... ........+++|+|||+|.+|+|.+..+...+. ..|++++|.+.
T Consensus 234 ~--~~~~~i~---g~~~--~gv~~~~~~l~~~-~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga--~~v~ii~r~~~ 302 (564)
T PRK12771 234 L--GKRLPIP---GEDA--AGVLDAVDFLRAV-GEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA--EEVTIVYRRTR 302 (564)
T ss_pred C--CCcCCCC---CCcc--CCcEEHHHHHHHh-hccCCcCCCCCEEEECChHHHHHHHHHHHHcCC--CEEEEEEecCc
Confidence 2 3334455 4321 1223222221100 000123458899999999999999988877763 35899998764
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=170.06 Aligned_cols=166 Identities=23% Similarity=0.298 Sum_probs=105.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+++|..|++.|++++|||+.+.+||.+....+.. ....++...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~------------------------~~~~~~~~~ 338 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSY------------------------RLPDEALDK 338 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcc------------------------cCCHHHHHH
Confidence 47899999999999999999999999999999988887655422211 111344444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++++ .+++++.|.. . +.... ....||+||+|||+.
T Consensus 339 ~~~~~~~~gv--~~~~~~~v~~----~--------------------------~~~~~------~~~~yD~vilAtGa~- 379 (604)
T PRK13984 339 DIAFIEALGV--KIHLNTRVGK----D--------------------------IPLEE------LREKHDAVFLSTGFT- 379 (604)
T ss_pred HHHHHHHCCc--EEECCCEeCC----c--------------------------CCHHH------HHhcCCEEEEEcCcC-
Confidence 4556667787 7777766521 1 00011 134699999999975
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhh----hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC---CCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE----AAANLVKGKRVTVVGLQKSALDIAMECTTANG---LENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~---~~~~V~~~ 235 (418)
.|+.++++ |.+. ..+++...+...... .......+++|+|||+|.+|+|+|..|...+. ...+|+++
T Consensus 380 -~~r~l~i~---G~~~--~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 380 -LGRSTRIP---GTDH--PDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred -CCccCCCC---CcCC--cCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 36667777 6432 123332222110000 00011236899999999999999999987642 11247776
Q ss_pred Ee
Q 014821 236 YR 237 (418)
Q Consensus 236 ~r 237 (418)
..
T Consensus 454 ~~ 455 (604)
T PRK13984 454 SL 455 (604)
T ss_pred cc
Confidence 53
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=157.76 Aligned_cols=166 Identities=22% Similarity=0.290 Sum_probs=106.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+++|..|++.|++|+|||+.+.+||...+..|. +....++..+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~------------------------~~~~~~~~~~~ 199 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPN------------------------MKLDKAIVDRR 199 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCC------------------------ccCCHHHHHHH
Confidence 699999999999999999999999999999988887754432221 11112344444
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.++++++ .+++++.+. .+ +.. +. ....||.||+|||+.
T Consensus 200 ~~~~~~~Gv--~~~~~~~v~-~~-----------------------------~~~-~~-----~~~~~d~VilAtGa~-- 239 (485)
T TIGR01317 200 IDLLSAEGI--DFVTNTEIG-VD-----------------------------ISA-DE-----LKEQFDAVVLAGGAT-- 239 (485)
T ss_pred HHHHHhCCC--EEECCCEeC-Cc-----------------------------cCH-HH-----HHhhCCEEEEccCCC--
Confidence 455666787 777776653 11 000 01 135699999999975
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCC--------CCch-hhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDY--------SDMD-YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|..+.++ |.+. . .+.....+ .... .........+++|+|||+|.+|+|+|..+...+. ..|++
T Consensus 240 ~~~~l~i~---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga--~~V~v 312 (485)
T TIGR01317 240 KPRDLPIP---GREL-K-GIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA--ASVHQ 312 (485)
T ss_pred CCCcCCCC---CcCC-C-CcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC--CEEEE
Confidence 36667777 5431 1 12221111 0000 0000112468999999999999999888777665 25999
Q ss_pred EEecCc
Q 014821 235 LYRTEH 240 (418)
Q Consensus 235 ~~r~~~ 240 (418)
+.+.+.
T Consensus 313 v~~~~~ 318 (485)
T TIGR01317 313 FEIMPK 318 (485)
T ss_pred EEecCC
Confidence 987654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-13 Score=131.35 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=38.4
Q ss_pred CccEEEEcCCHHHHHHHHHHH-hCCCceEEEeeCCCCCcccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLL-LKGFHPIVFEARSDIGGAWIKT 45 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~-~~~~~v~iie~~~~~gg~~~~~ 45 (418)
.++|+||||||||+.+|..|+ +.+++|+|||+.+.+||.+++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 468999999999999999876 5699999999999999988773
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=145.27 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.++|+||||||||+++|+.|++.|++|++||+....|
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL 419 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence 4799999999999999999999999999999965433
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-14 Score=137.15 Aligned_cols=165 Identities=28% Similarity=0.381 Sum_probs=115.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
-++|+||||||+||++|..|++.|++|+++|+.+..||...+..|..++ ..++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl------------------------~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKL------------------------PKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhc------------------------cchHHHH
Confidence 3789999999999999999999999999999999999887765443222 2478888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+++.|. +++.++++-. .++...- .-.+|+|++|+|+.
T Consensus 179 ~i~~l~~~Gv--~~~~~~~vG~------------------------------~it~~~L------~~e~Dav~l~~G~~- 219 (457)
T COG0493 179 RLELLERSGV--EFKLNVRVGR------------------------------DITLEEL------LKEYDAVFLATGAG- 219 (457)
T ss_pred HHHHHHHcCe--EEEEcceECC------------------------------cCCHHHH------HHhhCEEEEecccc-
Confidence 8888888887 7888776531 1221221 23459999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchh-h-------hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-E-------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|+..+++ |.+. ..+....++..... . ......++++|+|||+|.+++|++......|. ++|+.
T Consensus 220 -~~~~l~i~---g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga--~~v~~ 291 (457)
T COG0493 220 -KPRPLDIP---GEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA--KSVTC 291 (457)
T ss_pred -CCCCCCCC---CcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC--eEEEE
Confidence 68877777 5541 12222222211000 0 01122345999999999999999988877776 36888
Q ss_pred EEec
Q 014821 235 LYRT 238 (418)
Q Consensus 235 ~~r~ 238 (418)
+.|.
T Consensus 292 ~~~~ 295 (457)
T COG0493 292 FYRE 295 (457)
T ss_pred eccc
Confidence 8743
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=129.87 Aligned_cols=261 Identities=18% Similarity=0.154 Sum_probs=153.6
Q ss_pred EEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 6 IAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|||+|++|+.+|..|++. +.+++++........ ...+.+............+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY--------------------YRCPLSLYVGGGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC--------------------CCCccchHHhcccCCHHHhcccc
Confidence 58999999999999998884 457877777542210 00000000000000001111111
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
. ...+.++ .+..+++|..++... ..+.+.++ .+.||++|+|||+.
T Consensus 61 ~-~~~~~~i--~~~~~~~v~~id~~~------------------------~~v~~~~g------~~~yd~LvlatGa~-- 105 (415)
T COG0446 61 R-FNRATGI--DVRTGTEVTSIDPEN------------------------KVVLLDDG------EIEYDYLVLATGAR-- 105 (415)
T ss_pred h-hHHhhCC--EEeeCCEEEEecCCC------------------------CEEEECCC------cccccEEEEcCCCc--
Confidence 1 1134466 688888999998766 45666655 79999999999965
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
|..++.. .. ..+.......... .........++++|+|+|..|+++|..+..+|.. |+++...++...
T Consensus 106 -~~~~~~~---~~----~~~~~~~~~~~~~-~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~ 173 (415)
T COG0446 106 -PRPPPIS---DW----EGVVTLRLREDAE-ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGG 173 (415)
T ss_pred -ccCCCcc---cc----CceEEECCHHHHH-HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccch
Confidence 5554311 11 1122211111111 0111122258999999999999999999999865 999998875322
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
....
T Consensus 174 ~~~~---------------------------------------------------------------------------- 177 (415)
T COG0446 174 QLLD---------------------------------------------------------------------------- 177 (415)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 2100
Q ss_pred cccCcchhhhhccCcEEEeccC-ceeEecCc-------EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC
Q 014821 324 ITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG-------IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG 395 (418)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~-------v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~ 395 (418)
+.+.+.+.+.++..+|+++.+. +..++... +...++.. +++|.+++++|.+++..+....... ..
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~~p~~~l~~~~~~~------~~ 250 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE-IKADLVIIGPGERPNVVLANDALPG------LA 250 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE-EEeeEEEEeecccccHHHHhhCccc------ee
Confidence 0011122334455557776665 56666432 56778888 9999999999999984333322100 22
Q ss_pred CCCCCccceeeeeec-cCcccc
Q 014821 396 SPTEKLPLYRSAHIY-IDTLTY 416 (418)
Q Consensus 396 ~~~~~~~~~~~~~~~-~~~~~~ 416 (418)
...+.+.++..+..+ .+++|.
T Consensus 251 ~~~g~i~v~~~~~~~~~~~v~a 272 (415)
T COG0446 251 LAGGAVLVDERGGTSKDPDVYA 272 (415)
T ss_pred ccCCCEEEccccccCCCCCEEe
Confidence 445668888888554 777774
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=123.57 Aligned_cols=137 Identities=19% Similarity=0.336 Sum_probs=97.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--------ccccCCc----ceecCC---cc----ccccC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--------WIKTVET----TMLQTP---KQ----LYQFS 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--------~~~~~~~----~~l~~~---~~----~~~~~ 61 (418)
|+++||+|||||+|||.+|..++++|.+|+|||+++.+|.. ++.+... ..-+.| .. +..|.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 88999999999999999999999999999999999987642 2221111 111112 00 00111
Q ss_pred -----------CCCCCC-CCCCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 62 -----------DYPWPD-SVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 62 -----------~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
..++-. ..-.-|| ....+.+.+...+++.++ +++.+++|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~----------------- 141 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDD----------------- 141 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecC-----------------
Confidence 111111 1123444 466788888888899999 899999999999986
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~ 167 (418)
..+.+.+.++ .++.||.||+|||.. +.|.+
T Consensus 142 -----~~f~l~t~~g-----~~i~~d~lilAtGG~-S~P~l 171 (408)
T COG2081 142 -----SGFRLDTSSG-----ETVKCDSLILATGGK-SWPKL 171 (408)
T ss_pred -----ceEEEEcCCC-----CEEEccEEEEecCCc-CCCCC
Confidence 5688988887 589999999999977 46644
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=107.01 Aligned_cols=127 Identities=25% Similarity=0.362 Sum_probs=95.3
Q ss_pred EEEcCCHHHHHHHHHHHhC-----CCceEEEeeCCCC-Ccccccc-CCcceecCCccccccCCC-C-----------C--
Q 014821 7 AIVGAGVSGLLACKYLLLK-----GFHPIVFEARSDI-GGAWIKT-VETTMLQTPKQLYQFSDY-P-----------W-- 65 (418)
Q Consensus 7 vIIG~G~aGl~~a~~L~~~-----~~~v~iie~~~~~-gg~~~~~-~~~~~l~~~~~~~~~~~~-~-----------~-- 65 (418)
+|||+|++|++++.+|.++ ..+|+|||++..- |+.|... .+...+|+++..|+...- + .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999987 3589999996553 3577774 788889998887765321 1 0
Q ss_pred --CCCCCCCCCChhHHHHHHHHHHHhcC--ccc--c-eEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEE
Q 014821 66 --PDSVTTDFPDHNQVLDYIQSYASHFD--LRK--H-IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAV 138 (418)
Q Consensus 66 --~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~--~-v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (418)
.......|+++..+.+||++..+++- +.. . .....+|++|+..+ +.|.|.+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~----------------------~~~~v~~ 138 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD----------------------DGYRVVT 138 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC----------------------CcEEEEE
Confidence 01114689999999999999877752 110 1 23456899999877 5688888
Q ss_pred ecCCCCceeEEEeCEEEEeecc
Q 014821 139 EDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 139 ~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++ ..+.||.||||||.
T Consensus 139 ~~g-----~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 139 ADG-----QSIRADAVVLATGH 155 (156)
T ss_pred CCC-----CEEEeCEEEECCCC
Confidence 777 58899999999995
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=129.78 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=103.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+||+||++|-.|-+.|..|+|+||.+++||...+-.|++.+. ..+.+.-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkld------------------------k~vv~rr 1841 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLD------------------------KFVVQRR 1841 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchh------------------------HHHHHHH
Confidence 6899999999999999999999999999999999999988877765441 2344444
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
-+....-|+ .+..|+++-.- +.... -.-+.|.||+|+|+.
T Consensus 1842 v~ll~~egi--~f~tn~eigk~------------------------------vs~d~------l~~~~daiv~a~gst-- 1881 (2142)
T KOG0399|consen 1842 VDLLEQEGI--RFVTNTEIGKH------------------------------VSLDE------LKKENDAIVLATGST-- 1881 (2142)
T ss_pred HHHHHhhCc--eEEeecccccc------------------------------ccHHH------HhhccCeEEEEeCCC--
Confidence 455555566 55555554221 11111 134579999999986
Q ss_pred CCCCCCCCCCCCCCCC----CceEEeccC--CCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 164 VPNIPEFPPKKGPEAF----HGKVIHSMD--YSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
.|+-.+++ |-+.. .=..+|... +.+-..+--....++|+|+|||+|.+|.|....-..+|..
T Consensus 1882 ~prdlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1882 TPRDLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred CCcCCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 67766676 43321 000111110 0000000012346799999999999999998887777763
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=118.77 Aligned_cols=135 Identities=27% Similarity=0.376 Sum_probs=76.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--------ccccC----CcceecC----Ccccc----cc---
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--------WIKTV----ETTMLQT----PKQLY----QF--- 60 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--------~~~~~----~~~~l~~----~~~~~----~~--- 60 (418)
|||+|||||+|||.||..|++.|.+|+|+|+++.+|.. ++.+. +...... +.... .|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 69999999999999999999999999999999988632 22211 0000000 00000 00
Q ss_pred ------C--CCCCCCC-CCCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 61 ------S--DYPWPDS-VTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 61 ------~--~~~~~~~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
. ..++... ....|| ....+.+-|...+++.++ +++++++|.+++..+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~------------------- 139 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKE------------------- 139 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEET-------------------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecC-------------------
Confidence 0 0111100 012222 467888888888999999 899999999999876
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~ 167 (418)
++.|.|.+.+. .++.||.||||||.. +.|..
T Consensus 140 --~~~f~v~~~~~-----~~~~a~~vILAtGG~-S~p~~ 170 (409)
T PF03486_consen 140 --DGVFGVKTKNG-----GEYEADAVILATGGK-SYPKT 170 (409)
T ss_dssp --TEEEEEEETTT-----EEEEESEEEE----S-SSGGG
T ss_pred --CceeEeeccCc-----ccccCCEEEEecCCC-Ccccc
Confidence 34588888444 699999999999987 34543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=108.66 Aligned_cols=170 Identities=24% Similarity=0.288 Sum_probs=109.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
...|+|||+||||+.+|..|+++ +++|.|+|+.+.+.|..++.. .+..|.-..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvKnvi 76 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVKNVI 76 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchhhHH
Confidence 46899999999999999999984 589999999998887766511 22333334445
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
..+.+.+++-.. .++-|.+|- -.+.+++- +-.||.||||.|+
T Consensus 77 ntFt~~aE~~rf--sf~gNv~vG------------------------------~dvsl~eL------~~~ydavvLaYGa 118 (468)
T KOG1800|consen 77 NTFTKTAEHERF--SFFGNVKVG------------------------------RDVSLKEL------TDNYDAVVLAYGA 118 (468)
T ss_pred HHHHHHhhccce--EEEecceec------------------------------ccccHHHH------hhcccEEEEEecC
Confidence 555666665333 233333330 01222222 4569999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchh-----hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC-------
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-----EAAANLVKGKRVTVVGLQKSALDIAMECTTANGL------- 228 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~------- 228 (418)
. -++..++| |.+. ..++....+-.+.+ .....+....+|+|||.|..|+|+|..|...-..
T Consensus 119 ~--~dR~L~IP---Ge~l--~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi 191 (468)
T KOG1800|consen 119 D--GDRRLDIP---GEEL--SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDI 191 (468)
T ss_pred C--CCcccCCC---Cccc--ccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCC
Confidence 7 57788888 6551 12444333322221 1122445588999999999999999988764221
Q ss_pred ------------CCCeEEEEecCc
Q 014821 229 ------------ENPCTVLYRTEH 240 (418)
Q Consensus 229 ------------~~~V~~~~r~~~ 240 (418)
-+.|+++.|++.
T Consensus 192 ~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 192 PKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred cHHHHhhhhcCCcceEEEEeccCc
Confidence 145888888773
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=111.97 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=91.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------cCCcce--ecC--CccccccCCC--
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------TVETTM--LQT--PKQLYQFSDY-- 63 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------~~~~~~--l~~--~~~~~~~~~~-- 63 (418)
|.++||+||||||||++||+.|++.|++|+++|+...+|..... ..+... +.. ....+.+..-
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 67899999999999999999999999999999998877642222 001100 000 0000000100
Q ss_pred CCCCC-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 64 PWPDS-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 64 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
..... .......+..+.++|...+.+.|. .+...+++..+..++ +...+.+..+.
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 136 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRED----------------------DGVVVGVRAGD 136 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeC----------------------CcEEEEEEcCC
Confidence 00000 012333578888999999999999 899999999999887 44555554442
Q ss_pred CCceeEEEeCEEEEeeccCC
Q 014821 143 NHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++.+++||.|+|..+
T Consensus 137 ----~e~~a~~vI~AdG~~s 152 (396)
T COG0644 137 ----DEVRAKVVIDADGVNS 152 (396)
T ss_pred ----EEEEcCEEEECCCcch
Confidence 6899999999999875
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=104.60 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=86.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc-ccc--cCCcceecCCc-cccccCCCCCCCCCC-CCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA-WIK--TVETTMLQTPK-QLYQFSDYPWPDSVT-TDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~-~~~--~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 77 (418)
.+||+|||||++|+++|+.|++.|++|+|+|++..+|+. |.. .++...+..+. .++.-...++..... ....++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 589999999999999999999999999999999888764 321 12211111110 011111112211101 1223566
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec------CCCCceeEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED------AKNHSTEVHQV 151 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~i~~ 151 (418)
++...|...+.+.+. .++++++|.++...+ + +...-+.+.. +......++.+
T Consensus 105 ~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~--~------------------g~V~Gvv~~~~~v~~~g~~~~~~~i~A 162 (257)
T PRK04176 105 EAAAKLAAAAIDAGA--KIFNGVSVEDVILRE--D------------------PRVAGVVINWTPVEMAGLHVDPLTIEA 162 (257)
T ss_pred HHHHHHHHHHHHcCC--EEEcCceeceeeEeC--C------------------CcEEEEEEccccccccCCCCCcEEEEc
Confidence 777888888888898 899999999998755 0 0111122211 11123468999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
+.||+|||..+
T Consensus 163 k~VI~ATG~~a 173 (257)
T PRK04176 163 KAVVDATGHDA 173 (257)
T ss_pred CEEEEEeCCCc
Confidence 99999999875
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-10 Score=103.49 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=146.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC--------ccccccCCcceecCCccccccCCCCCCC-----C
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG--------GAWIKTVETTMLQTPKQLYQFSDYPWPD-----S 68 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g--------g~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~ 68 (418)
...+|||+|.+..+++...... +.++.+|...+..- ..|.+..|+ +...+.|..+.-.. .
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn-----~~k~lrfkqwsGkeRsiffe 253 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPN-----SAKKLRFKQWSGKERSIFFE 253 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCC-----hhhheeecccCCccceeEec
Confidence 4689999999999888777664 45677776654321 122222221 11222222211100 0
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeE
Q 014821 69 VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 148 (418)
...+|.+..++-. +..-|+ .+....+|+.|+..+ ..|+++++ .+
T Consensus 254 pd~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d------------------------~~V~LnDG-----~~ 297 (659)
T KOG1346|consen 254 PDGFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEED------------------------KKVILNDG-----TT 297 (659)
T ss_pred CCcceeChhHCcc-----cccCce--EEEeccceEEeeccc------------------------CeEEecCC-----cE
Confidence 0233333332211 223355 677777888888766 56888888 69
Q ss_pred EEeCEEEEeeccCCCCCCCCCCCCCCCCCCCC-ceEEecc-CCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH-GKVIHSM-DYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 149 i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
|.||.++||||. .|.-.++....+.+... -.++|.. ++..+. .-....++|.|||+|..|-|+|-.|....
T Consensus 298 I~YdkcLIATG~---~Pk~l~~~~~A~~evk~kit~fr~p~DF~rle----k~~aek~siTIiGnGflgSELacsl~rk~ 370 (659)
T KOG1346|consen 298 IGYDKCLIATGV---RPKKLQVFEEASEEVKQKITYFRYPADFKRLE----KGLAEKQSITIIGNGFLGSELACSLKRKY 370 (659)
T ss_pred eehhheeeecCc---CcccchhhhhcCHHhhhheeEEecchHHHHHH----HhhhhcceEEEEcCcchhhhHHHHHHHhh
Confidence 999999999995 46644322111222111 1233322 122211 22334588999999999999999998643
Q ss_pred C-CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 227 G-LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 227 ~-~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
. ...+|+.+..... ++. +.+.+++.
T Consensus 371 r~~g~eV~QvF~Ek~-----------nm~------------------------------------kiLPeyls------- 396 (659)
T KOG1346|consen 371 RNEGVEVHQVFEEKY-----------NME------------------------------------KILPEYLS------- 396 (659)
T ss_pred hccCcEEEEeecccC-----------Chh------------------------------------hhhHHHHH-------
Confidence 3 2234665554321 000 01111111
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
.-..+.++.++|.++.+. |..+. .+. +.+.||.+ +..|.||.|+|-.|+..+
T Consensus 397 ----------------------~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~-l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 397 ----------------------QWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSE-LRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred ----------------------HHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCe-eeeeeEEEEecCCCchhh
Confidence 111357788899999886 54443 333 56789999 999999999999999776
Q ss_pred hc
Q 014821 381 KN 382 (418)
Q Consensus 381 ~~ 382 (418)
+.
T Consensus 454 a~ 455 (659)
T KOG1346|consen 454 AE 455 (659)
T ss_pred cc
Confidence 65
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-10 Score=112.16 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=87.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc------ccc-------------------cCCcceecCCc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK-------------------TVETTMLQTPK 55 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~------~~~-------------------~~~~~~l~~~~ 55 (418)
|+++||+|||||++||++|..|+++|++++|||+.+.+... +.. .++......+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 88999999999999999999999999999999998754211 000 00000000000
Q ss_pred ccc-c--cCCC--CCCC--CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 56 QLY-Q--FSDY--PWPD--SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 56 ~~~-~--~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
... . +... +... .......++..+.+.|.+.+.+.+. ++.+++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~------------------- 139 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA------------------- 139 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC-------------------
Confidence 000 0 0000 0000 0001122455667778888887787 899999999998766
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVP 165 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p 165 (418)
+.+++++.... ...++.+|+||.|+|..|...
T Consensus 140 ---~~v~v~~~~~~--~~~~i~a~~vVgADG~~S~vR 171 (502)
T PRK06184 140 ---DGVTARVAGPA--GEETVRARYLVGADGGRSFVR 171 (502)
T ss_pred ---CcEEEEEEeCC--CeEEEEeCEEEECCCCchHHH
Confidence 44666664321 236899999999999986433
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=109.46 Aligned_cols=136 Identities=24% Similarity=0.223 Sum_probs=87.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------------------c--CCcceecCCcc-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------------------T--VETTMLQTPKQ- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------------------~--~~~~~l~~~~~- 56 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.+...... . ...........
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 379999999999999999999999999999998754211100 0 00000000000
Q ss_pred ---------ccccCCCC-CCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 57 ---------LYQFSDYP-WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 57 ---------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
......+. ...........+..+.+.|.+.+++.+. .+.+++++++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~----------------- 141 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDD----------------- 141 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEET-----------------
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccc-----------------
Confidence 00000000 0000011223567888999999998897 899999999998876
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+...+.+.+..++..+++.+|.||.|.|..|
T Consensus 142 -----~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 142 -----DGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp -----TEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred -----cccccccccccCCceeEEEEeeeecccCccc
Confidence 4456666676667778999999999999986
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-10 Score=110.38 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc---c---ccc---------------cCCccee--cCCccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---A---WIK---------------TVETTML--QTPKQL 57 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg---~---~~~---------------~~~~~~l--~~~~~~ 57 (418)
|+.+||+|||||++|+++|..|+++|++|+|||+.+.+.. . .+. ..+.+.- ..+...
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 7889999999999999999999999999999999875321 0 000 0000000 001111
Q ss_pred cccCC------CCCCCC--CC---CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCC
Q 014821 58 YQFSD------YPWPDS--VT---TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125 (418)
Q Consensus 58 ~~~~~------~~~~~~--~~---~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 125 (418)
+.+.+ ..+... .. .....+..+.+.|.+.+... ++ ++.++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~---------------- 142 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWGE---------------- 142 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------
Confidence 11100 000000 00 11234567777777777765 56 788999999998765
Q ss_pred CCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 126 QPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 126 ~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
+...|++.++ .++.+|.||.|.|..|......
T Consensus 143 ------~~v~v~~~~g-----~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 143 ------NEAFLTLKDG-----SMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred ------CeEEEEEcCC-----CEEEeeEEEEeCCCCcHHHHHc
Confidence 4466766555 5799999999999987444433
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-11 Score=107.03 Aligned_cols=153 Identities=24% Similarity=0.366 Sum_probs=84.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH--H-
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL--D- 81 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 81 (418)
||+|||||+||+++|..|++.+.+++|+|+.+..+.. ....+...+.... .....+. +
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIPSPLLVEIA------------------PHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHHHHHHHHHH------------------HHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-ccccccccccccc------------------ccccccccccc
Confidence 7999999999999999999999999999886522110 0000000000000 0000111 0
Q ss_pred -HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 -YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 -~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+.+...+.+. ++.+++++.+++... +. + ....+.+.... ++...++.||+||+|||.
T Consensus 62 ~~~~~~~~~~~v--~~~~~~~v~~i~~~~----~~------------~-~~~~~~~~~~~--~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 62 FKLVDQLKNRGV--EIRLNAKVVSIDPES----KR------------V-VCPAVTIQVVE--TGDGREIKYDYLVIATGS 120 (201)
T ss_dssp GHHHHHHHHHTH--EEEHHHTEEEEEEST----TE------------E-EETCEEEEEEE--TTTEEEEEEEEEEEESTE
T ss_pred cccccccccceE--EEeeccccccccccc----cc------------c-ccCcccceeec--cCCceEecCCeeeecCcc
Confidence 22222344566 677889999998766 00 0 00012222211 234578999999999995
Q ss_pred CCCCCCCCCCCCCCCCCC--CCceEEeccCCCCchhhhhhhhcCCCEEEEEc
Q 014821 161 FSDVPNIPEFPPKKGPEA--FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG 210 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 210 (418)
. |..|.++ |.+. +...+.++..+.. .....++|+|||
T Consensus 121 ~---~~~~~i~---g~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG 159 (201)
T PF07992_consen 121 R---PRTPNIP---GEEVAYFLRGVDDAQRFLE-------LLESPKRVAVVG 159 (201)
T ss_dssp E---EEEESST---TTTTECBTTSEEHHHHHHT-------HSSTTSEEEEES
T ss_pred c---cceeecC---CCccccccccccccccccc-------cccccccccccc
Confidence 4 6666676 6521 1122333222222 223455999999
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=110.87 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=88.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC--c-----ccccc---CCcce----ec---CCccccccC--
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G-----AWIKT---VETTM----LQ---TPKQLYQFS-- 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g--g-----~~~~~---~~~~~----l~---~~~~~~~~~-- 61 (418)
|..+||+|||||++|+++|..|+++|++++|||+.+.+. + .+... +...- +. .+.....|.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 788999999999999999999999999999999976431 1 01100 00000 00 000000111
Q ss_pred CCCC---CCCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 62 DYPW---PDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 62 ~~~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
...+ +... ......+..+.+.|.+.++++++ .+++++++++++.++ +.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~~----------------------~~v~v~ 136 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQDD----------------------TGVDVE 136 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC----------------------CeEEEE
Confidence 0011 1000 11122456777788888888888 899999999998876 446666
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
+.++ .++.+|+||.|+|..|......
T Consensus 137 ~~~g-----~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 137 LSDG-----RTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred ECCC-----CEEEeCEEEEecCCCCCcHhhc
Confidence 6443 4799999999999987444443
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-10 Score=105.08 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=85.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------cCCcceecCCccccccC-------CCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------TVETTMLQTPKQLYQFS-------DYPW 65 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------~~~~~~l~~~~~~~~~~-------~~~~ 65 (418)
+||+|||||++|+++|+.|++.|++|+|+|+...++..+.. ..+............+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 59999999999999999999999999999998765542221 00000000000000000 0111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
+.. .....++..+.+.+.+.+.+.+. ++.++++|+++...+ +.+.+.+.++
T Consensus 81 ~~~-~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~----------------------~~~~~~~~~~---- 131 (295)
T TIGR02032 81 ETE-LAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHD----------------------DRVVVIVRGG---- 131 (295)
T ss_pred CCC-cEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeC----------------------CEEEEEEcCc----
Confidence 100 11224677888888888888888 899999999998766 3344544432
Q ss_pred eeEEEeCEEEEeeccCC
Q 014821 146 TEVHQVDFVILCVGRFS 162 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~ 162 (418)
..++.+|+||+|+|..+
T Consensus 132 ~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 132 EGTVTAKIVIGADGSRS 148 (295)
T ss_pred cEEEEeCEEEECCCcch
Confidence 25799999999999874
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=94.83 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=60.0
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQK 213 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 213 (418)
.-+.+.++ ..+.|++|.+|+| ..|.... + +.+ ..++--.+-.. .........+.|.|.|+|.|-
T Consensus 81 hci~t~~g-----~~~ky~kKOG~tg---~kPklq~-E---~~n---~~Iv~irDtDs-aQllq~kl~kaK~VlilgnGg 144 (334)
T KOG2755|consen 81 HCIHTQNG-----EKLKYFKLCLCTG---YKPKLQV-E---GIN---PKIVGIRDTDS-AQLLQCKLVKAKIVLILGNGG 144 (334)
T ss_pred ceEEecCC-----ceeeEEEEEEecC---CCcceee-c---CCC---ceEEEEecCcH-HHHHHHHHhhcceEEEEecCc
Confidence 34666666 5899999999999 4565531 1 222 22332111111 111234667899999999999
Q ss_pred CHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC
Q 014821 214 SALDIAMECTTANGLENPCTVLYRTEHWNIPDYF 247 (418)
Q Consensus 214 sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~ 247 (418)
+++|++.++.... |+|....+ ++...+.
T Consensus 145 ia~El~yElk~~n-----v~w~ikd~-~IsaTFf 172 (334)
T KOG2755|consen 145 IAMELTYELKILN-----VTWKIKDE-GISATFF 172 (334)
T ss_pred hhHHHHHHhhcce-----eEEEecch-hhhhccc
Confidence 9999999997643 88888765 5666655
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=106.03 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc--ccCC---------cce-----ecCCccccccC-----
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI--KTVE---------TTM-----LQTPKQLYQFS----- 61 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~--~~~~---------~~~-----l~~~~~~~~~~----- 61 (418)
++||+|||||++|+++|..|++.|++++|+|+.+.+...-. ...+ ++. ...+...+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57999999999999999999999999999999864321000 0000 000 00001101100
Q ss_pred ---CCCCCC-----CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 62 ---DYPWPD-----SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 62 ---~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
.++.+. ........+..+.+++.+.+.+.++ .+.++++|++++... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~ 139 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDD----------------------DG 139 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcC----------------------CE
Confidence 011000 0011234567888889888888888 899999999998765 44
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.|.+.++ .++.+|.||.|+|..|
T Consensus 140 ~~v~~~~g-----~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 140 VTVTFSDG-----TTGRYDLVVGADGLYS 163 (375)
T ss_pred EEEEEcCC-----CEEEcCEEEECcCCCc
Confidence 67776655 4799999999999885
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-10 Score=108.54 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=82.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--ccccCCcce------e-------cCCccccccCC---
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--WIKTVETTM------L-------QTPKQLYQFSD--- 62 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--~~~~~~~~~------l-------~~~~~~~~~~~--- 62 (418)
|+.+||+|||||++|+++|..|+++|++|+|||+.+..... +....++.+ + ..+...+.+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 34579999999999999999999999999999997643210 000000000 0 00111111100
Q ss_pred ------------CCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 63 ------------YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 63 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
............++..+.+.+.+.+.+++. ...++++|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~~~--------------------- 141 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRPRE--------------------- 141 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEEcC---------------------
Confidence 000000001123456677777777777654 347789999998765
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 142 -~~~~v~~~~g-----~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 142 -DEVTVTLADG-----TTLSARLVVGADGRNS 167 (388)
T ss_pred -CeEEEEECCC-----CEEEEeEEEEecCCCc
Confidence 5577877655 5799999999999885
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=100.10 Aligned_cols=139 Identities=20% Similarity=0.248 Sum_probs=87.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-cccc--cCCcceecCCcc-ccccCCCCCCCCCC-CCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQ-LYQFSDYPWPDSVT-TDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 77 (418)
.+||+|||||++|+++|+.|+++|++++|+|++..+|+ .|.. .++...+..+.. ++.-...++..... .....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 58999999999999999999999999999999988764 4433 222222221111 11111222221101 1122456
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec------CCCCceeEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED------AKNHSTEVHQV 151 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~i~~ 151 (418)
++...|...+.+.+. ++++++.|.++...+ +. ....-|.+.. +......++.+
T Consensus 101 el~~~L~~~a~e~GV--~I~~~t~V~dli~~~--~~-----------------~~V~GVv~~~~~v~~~g~~~d~~~i~A 159 (254)
T TIGR00292 101 EFISTLASKALQAGA--KIFNGTSVEDLITRD--DT-----------------VGVAGVVINWSAIELAGLHVDPLTQRS 159 (254)
T ss_pred HHHHHHHHHHHHcCC--EEECCcEEEEEEEeC--CC-----------------CceEEEEeCCccccccCCCCCCEEEEc
Confidence 788888888888898 899999999998765 10 0011122211 11112468999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
+.||.|||..+
T Consensus 160 k~VVdATG~~a 170 (254)
T TIGR00292 160 RVVVDATGHDA 170 (254)
T ss_pred CEEEEeecCCc
Confidence 99999999653
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=109.26 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=89.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---c----------------------CCcceecCCcc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---T----------------------VETTMLQTPKQ 56 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~----------------------~~~~~l~~~~~ 56 (418)
..+||+|||||++|+++|..|+++|++++|||+.+.+....+. . .....+.....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4689999999999999999999999999999998765321111 0 00111100000
Q ss_pred --ccccCCCCCC--CCCC-CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 57 --LYQFSDYPWP--DSVT-TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 57 --~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
...+.. +.. ..+. .....+..+.+.|.+.+.++ ++ .++++++|++++.++
T Consensus 89 ~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~--------------------- 144 (538)
T PRK06183 89 RCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD--------------------- 144 (538)
T ss_pred CEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC---------------------
Confidence 001110 000 0000 11224556777787777765 67 799999999998876
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.++|++.+. +|...++++|+||.|+|..|....
T Consensus 145 -~~v~v~~~~~-~G~~~~i~ad~vVgADG~~S~vR~ 178 (538)
T PRK06183 145 -DGVTVTLTDA-DGQRETVRARYVVGCDGANSFVRR 178 (538)
T ss_pred -CeEEEEEEcC-CCCEEEEEEEEEEecCCCchhHHH
Confidence 4577777643 344578999999999999864433
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=104.66 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=84.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CC---CCccccc-c--------------CCcceecCCccccccCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SD---IGGAWIK-T--------------VETTMLQTPKQLYQFSDYP 64 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~---~gg~~~~-~--------------~~~~~l~~~~~~~~~~~~~ 64 (418)
+||+||||||+|+++|+.|++.|++|+|+|+. .. .|+.... . ..+..+..|..... ...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPI--KVT 78 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCcee--eec
Confidence 69999999999999999999999999999997 21 1211110 0 01111111111000 001
Q ss_pred CCCCCCCCC---CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 65 WPDSVTTDF---PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 65 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
.+. ...+ ..+..+.++|.+.+.+.|. ++.. +.|+++...+ +.+.|++.++
T Consensus 79 ~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~~----------------------~~~~v~~~~~ 131 (388)
T TIGR02023 79 IPS--EDGYVGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERDR----------------------DGVTLTYRTP 131 (388)
T ss_pred cCC--CCCceEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEcC----------------------CeEEEEEEec
Confidence 111 1112 5778888899998888888 6754 5688887665 4577776642
Q ss_pred ---CCCceeEEEeCEEEEeeccCCC
Q 014821 142 ---KNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 142 ---~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.++...++.+|.||.|+|..|.
T Consensus 132 ~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 132 KKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred cccCCCcceEEEeCEEEECCCCCcH
Confidence 1233468999999999998863
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=106.75 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC----cc-cc--c-cCCcce------e--------cCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG----GA-WI--K-TVETTM------L--------QTPKQLYQ 59 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g----g~-~~--~-~~~~~~------l--------~~~~~~~~ 59 (418)
..+||+|||||++|+++|..|+++|++|+|||+.+.+. +. .+ . ...+.. + ..+...+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 36899999999999999999999999999999976431 10 00 0 000000 0 00000000
Q ss_pred -----------cCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 60 -----------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 60 -----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
|..............++..+.+.|.+.+++.++ .+.++++|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDA------------------- 143 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecC-------------------
Confidence 000000000001123456777778887877788 789999999998765
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 144 ---~~v~v~~~~g-----~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 144 ---DRVRLRLDDG-----RRLEAALAIAADGAAS 169 (392)
T ss_pred ---CeEEEEECCC-----CEEEeCEEEEecCCCc
Confidence 4567776554 4799999999999885
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-09 Score=100.45 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=67.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---cCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.++++|||||++|++||..|++.|++++++|+++++||.... .+|.. .+++ --+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~-------dcs~----------------C~L 180 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTN-------DCSI----------------CIL 180 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCc-------ccch----------------hhc
Confidence 368999999999999999999999999999999999987444 22211 0000 112
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
...+.+..++-++ +++++++|.++...- +.|+|.++..
T Consensus 181 aP~m~~v~~hp~i--~l~TyaeV~ev~G~v----------------------GnF~vki~kk 218 (622)
T COG1148 181 APKMVEVSNHPNI--ELITYAEVEEVSGSV----------------------GNFTVKIEKK 218 (622)
T ss_pred cchhhhhccCCce--eeeeeeeeeeecccc----------------------cceEEEEecc
Confidence 2234555566677 788889999988765 6788888765
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=106.48 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=84.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc-------c----cCCcceecCCc------cccccCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI-------K----TVETTMLQTPK------QLYQFSD--- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~-------~----~~~~~~l~~~~------~~~~~~~--- 62 (418)
++||+|||||++|+++|..|+++|++|+|+|+.+.+|.... . ..+......|. ..+.+..
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 59999999999999999999999999999999876543211 0 11111000010 0011100
Q ss_pred ---CCCC-----CCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 63 ---YPWP-----DSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 63 ---~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
..+. ... ......+..+.++|.+.+.+.|+ .++.+++|+++..++ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------g~ 140 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQRD----------------------GK 140 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEeC----------------------CE
Confidence 0111 000 11223577888889999988898 899999999988655 33
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+...++ .++.||.||+|+|..+
T Consensus 141 v~~v~~~g-----~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 141 VVGVEADG-----DVIEAKTVILADGVNS 164 (428)
T ss_pred EEEEEcCC-----cEEECCEEEEEeCCCH
Confidence 33222233 3789999999999875
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=105.94 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-------c-c---ccc---cCC--cc----e--ecCCcccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-------G-A---WIK---TVE--TT----M--LQTPKQLY 58 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-------g-~---~~~---~~~--~~----~--l~~~~~~~ 58 (418)
|..+||+|||||++|+++|..|+++|++|+|+|+.+.+. | . +.. ... ++ . ...+...+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 778999999999999999999999999999999986421 1 1 000 000 00 0 00011111
Q ss_pred ccCCC------CCCC-----CCCCCCCChhHHHHHHHHHHH-hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 59 QFSDY------PWPD-----SVTTDFPDHNQVLDYIQSYAS-HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 59 ~~~~~------~~~~-----~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
.+.+. .++. .......++..+.+.+.+.+. ..++ .+.++++|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~----------------- 141 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDD----------------- 141 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcC-----------------
Confidence 11000 0100 000111233445555544443 3567 799999999998765
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~ 167 (418)
+.+.|.+.++ .++.+|.||.|+|..|.....
T Consensus 142 -----~~~~v~~~~g-----~~~~a~~vI~AdG~~S~vr~~ 172 (392)
T PRK09126 142 -----DGAQVTLANG-----RRLTARLLVAADSRFSATRRQ 172 (392)
T ss_pred -----CeEEEEEcCC-----CEEEeCEEEEeCCCCchhhHh
Confidence 4466776554 479999999999988644443
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=106.27 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC-----CccccccCCccee------cCCccccccCC-CCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAWIKTVETTML------QTPKQLYQFSD-YPWPDSVT 70 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~-----gg~~~~~~~~~~l------~~~~~~~~~~~-~~~~~~~~ 70 (418)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. .+.|........+ ..+.....+.+ ........
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 579999999999999999999999999999996532 1233221110000 00110111110 00000111
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
.....+..+.+++.+.+.+.++ ++. .++|.+++..+ +.+.|++.++ .++.
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~----------------------~~~~V~~~dG-----~~i~ 157 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEE----------------------SKSLVVCDDG-----VKIQ 157 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcC----------------------CeEEEEECCC-----CEEE
Confidence 2234677888888888877777 554 57899998765 4577877766 5899
Q ss_pred eCEEEEeeccCC
Q 014821 151 VDFVILCVGRFS 162 (418)
Q Consensus 151 ~d~vIlAtG~~~ 162 (418)
||.||.|+|..+
T Consensus 158 A~lVI~AdG~~s 169 (447)
T PLN02463 158 ASLVLDATGFSR 169 (447)
T ss_pred cCEEEECcCCCc
Confidence 999999999875
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-09 Score=107.30 Aligned_cols=139 Identities=18% Similarity=0.271 Sum_probs=87.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---------cCCccee-------cCCc----c------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---------TVETTML-------QTPK----Q------ 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---------~~~~~~l-------~~~~----~------ 56 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.....-.. .+..+-+ -.+. .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 579999999999999999999999999999998643211000 0000000 0000 0
Q ss_pred -----c--cccCCCC------------CCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccc
Q 014821 57 -----L--YQFSDYP------------WPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEK 116 (418)
Q Consensus 57 -----~--~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~ 116 (418)
. +.+.... +.........++..+...|.+.+.+. ++ .++++++|++++.++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~------- 157 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDA------- 157 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECC-------
Confidence 0 0000000 00000012234556777777777664 66 799999999998766
Q ss_pred cccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCC
Q 014821 117 SWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVP 165 (418)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p 165 (418)
+..++++.+..++...++.+|+||.|+|..|...
T Consensus 158 ---------------~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR 191 (545)
T PRK06126 158 ---------------DGVTATVEDLDGGESLTIRADYLVGCDGARSAVR 191 (545)
T ss_pred ---------------CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHH
Confidence 4466777665556667899999999999986433
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=105.99 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=82.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-----ccccccCCc------cee-------cCCccccccCCC-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-----GAWIKTVET------TML-------QTPKQLYQFSDY- 63 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-----g~~~~~~~~------~~l-------~~~~~~~~~~~~- 63 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+... ....-...+ +-+ ..+...+.+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4799999999999999999999999999999987542 111000000 000 001111111000
Q ss_pred -----CCCCC---C-C-CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 64 -----PWPDS---V-T-TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 64 -----~~~~~---~-~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
.+... . . .....+..+.+.|.+.+.+. ++ .+.+++++++++..+ +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~~----------------------~ 153 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQQ----------------------D 153 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------------C
Confidence 00100 0 0 01112345666666666665 56 788899999998765 4
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCCCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
.+.|++.++ +...+++||.||.|+|..|..
T Consensus 154 ~~~v~~~~~--~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 154 AATVTLEIE--GKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred eeEEEEccC--CcceEEeeeEEEEeCCCCchh
Confidence 566776543 333579999999999998643
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-09 Score=106.36 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=85.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc------ccc---cCCccee-------cCCccccccCC----
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK---TVETTML-------QTPKQLYQFSD---- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~------~~~---~~~~~~l-------~~~~~~~~~~~---- 62 (418)
++||+|||||++|+++|..|+++|++++|||+.+.+... +.. ....+-+ ..+...+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 389999999999999999999999999999998753210 000 0000000 00000011110
Q ss_pred CCCCC---CC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEE
Q 014821 63 YPWPD---SV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAV 138 (418)
Q Consensus 63 ~~~~~---~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (418)
..+.. .. .....++..+.+.|.+.+++.+. .+.+++++++++..+ +..++++
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~v~v~~ 137 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDG----------------------DGVEVVV 137 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcC----------------------CeEEEEE
Confidence 11110 00 01123566778888888888888 899999999998765 4456666
Q ss_pred ecCCCCceeEEEeCEEEEeeccCCC
Q 014821 139 EDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 139 ~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+ + ..++++|+||.|.|..|.
T Consensus 138 ~~~~-g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 138 RGPD-G-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred EeCC-c-cEEEEeCEEEECCCCChH
Confidence 5432 2 357999999999999863
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-09 Score=104.21 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=83.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc-------cc----cCCcceecCC------ccccccCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-------IK----TVETTMLQTP------KQLYQFSD--- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~-------~~----~~~~~~l~~~------~~~~~~~~--- 62 (418)
++||+|||||++|+++|+.|+++|++|+|||+...+|..- .. ..+......| ...+.+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 5899999999999999999999999999999987654211 00 1111110000 01111100
Q ss_pred ---CCCCCC------CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 63 ---YPWPDS------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 63 ---~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
..+... .......+..+.++|.+.+.+.+. .++.+++|+++...+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------~~ 140 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVREG----------------------NK 140 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEeC----------------------CE
Confidence 001100 011223567777888888888888 888999999987654 23
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.....++ .++.||.||+|+|..+
T Consensus 141 v~~v~~~~-----~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 141 VTGVQAGD-----DILEANVVILADGVNS 164 (429)
T ss_pred EEEEEeCC-----eEEECCEEEEccCcch
Confidence 33222222 4799999999999875
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-09 Score=103.63 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=83.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----cCCccee-----cCCccccccC--CCCCCCCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----TVETTML-----QTPKQLYQFS--DYPWPDSVTTD 72 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----~~~~~~l-----~~~~~~~~~~--~~~~~~~~~~~ 72 (418)
||+|||||++|+++|..|++.|++|+|+|+++.+++.... ..+...+ +.-...+.+. ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999998877653211 1111100 0000001111 11100000111
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
...+..+.+++.+.+.+.++ .+ +.++|.++.... .+.+.|++.++ .++.|+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~~~a~ 131 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEADG---------------------VALSTVYCAGG-----QRIQAR 131 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEecC---------------------CceeEEEeCCC-----CEEEeC
Confidence 24567888888888887776 45 467888887763 25577877665 589999
Q ss_pred EEEEeeccCC
Q 014821 153 FVILCVGRFS 162 (418)
Q Consensus 153 ~vIlAtG~~~ 162 (418)
.||.|+|..|
T Consensus 132 ~VI~A~G~~s 141 (388)
T TIGR01790 132 LVIDARGFGP 141 (388)
T ss_pred EEEECCCCch
Confidence 9999999874
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-09 Score=104.30 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcc-------ee-------cCCcccc------c
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETT-------ML-------QTPKQLY------Q 59 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~-------~l-------~~~~~~~------~ 59 (418)
+.+||+|||||++|+++|..|+++|++++|||+.+.+...-+. ..+.. -+ ..+.... .
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 4689999999999999999999999999999998754321110 00000 00 0000000 0
Q ss_pred cC--CCC-CC--CCC---CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 60 FS--DYP-WP--DSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 60 ~~--~~~-~~--~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
+. ... +. ... .....++..+...|.+.+.++++ .+.++++|++++..+
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~~---------------------- 139 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELNQ---------------------- 139 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcC----------------------
Confidence 00 000 00 000 01112455677788888888888 899999999998876
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.+.+.++ .++.|++||.|+|..|....
T Consensus 140 ~~v~v~~~~g-----~~v~a~~vVgADG~~S~vR~ 169 (487)
T PRK07190 140 AGCLTTLSNG-----ERIQSRYVIGADGSRSFVRN 169 (487)
T ss_pred CeeEEEECCC-----cEEEeCEEEECCCCCHHHHH
Confidence 3455665443 48999999999999863333
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-09 Score=102.31 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=81.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Ccc--------ccc---------cCCccee--cCCccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA--------WIK---------TVETTML--QTPKQL 57 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~--------~~~---------~~~~~~l--~~~~~~ 57 (418)
|+.+||+|||||++|+++|..|++.|++|+|||+.+.. .+. +.. ..+.+.- ..+...
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccce
Confidence 87899999999999999999999999999999986411 000 000 0000000 001000
Q ss_pred cc----------cCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 58 YQ----------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 58 ~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
+. |...............+..+...|.+.+... ++ .+.++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~~----------------- 141 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFSA----------------- 141 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEcC-----------------
Confidence 00 0000000000001112334444454444444 45 788899999998866
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.++|++.++ .++.+|.||.|+|..|....
T Consensus 142 -----~~~~v~~~~g-----~~~~~~lvIgADG~~S~vR~ 171 (384)
T PRK08849 142 -----EGNRVTLESG-----AEIEAKWVIGADGANSQVRQ 171 (384)
T ss_pred -----CeEEEEECCC-----CEEEeeEEEEecCCCchhHH
Confidence 4567877765 58999999999999864333
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-09 Score=103.32 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=84.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCcc--------ccc---cCCccee-------cCCccccccCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGA--------WIK---TVETTML-------QTPKQLYQFSD 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~--------~~~---~~~~~~l-------~~~~~~~~~~~ 62 (418)
++||+|||||++|+++|..|+++| ++|+|||+.+..... +.. ....+-+ ..+...+.+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 489999999999999999999985 999999997642110 000 0000000 00111111100
Q ss_pred -----------CCCCC----CC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 63 -----------YPWPD----SV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 63 -----------~~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
..+.. .. ......+..+.+.|.+.+.+.++ .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------- 141 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETRD----------------- 141 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC-----------------
Confidence 00000 00 01124567888888888888888 899999999998766
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+.|.+.++ .++.||.||.|+|..|.
T Consensus 142 -----~~v~v~~~~g-----~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 142 -----EGVTVTLSDG-----SVLEARLLVAADGARSK 168 (403)
T ss_pred -----CEEEEEECCC-----CEEEeCEEEEcCCCChH
Confidence 4566776554 47999999999998753
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-09 Score=101.49 Aligned_cols=128 Identities=24% Similarity=0.246 Sum_probs=79.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---c--------CCcc--e---ecCCccccccC------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---T--------VETT--M---LQTPKQLYQFS------ 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~--------~~~~--~---l~~~~~~~~~~------ 61 (418)
++|+|||||++|+++|..|+++|++++|+|+++.+...... . ..++ . ...+...+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 47999999999999999999999999999998754311000 0 0000 0 00011111111
Q ss_pred --CCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEe
Q 014821 62 --DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (418)
Q Consensus 62 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (418)
..++.........++..+.+.|.+.+. .. .++++++|++++..+ +.+.|++.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~----------------------~~v~v~~~ 134 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--ED--AIFTGKEVTKIENET----------------------DKVTIHFA 134 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--Cc--eEEECCEEEEEEecC----------------------CcEEEEEC
Confidence 011111101122355666666665543 23 688999999998655 55777776
Q ss_pred cCCCCceeEEEeCEEEEeeccCC
Q 014821 140 DAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 140 ~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ .++.+|.||.|.|..|
T Consensus 135 ~g-----~~~~~~~vigadG~~S 152 (373)
T PRK06753 135 DG-----ESEAFDLCIGADGIHS 152 (373)
T ss_pred CC-----CEEecCEEEECCCcch
Confidence 65 4789999999999886
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.3e-09 Score=103.17 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=81.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CCC--Ccc--------ccc---------cCCccee--cCCcccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SDI--GGA--------WIK---------TVETTML--QTPKQLY 58 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~~--gg~--------~~~---------~~~~~~l--~~~~~~~ 58 (418)
|..+||+|||||++|+++|..|+++|++++|+|+. +.. +.. ... ..+.+.- ..+...+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 56789999999999999999999999999999996 211 110 000 0000000 0011111
Q ss_pred ccCCC------CCCCCC--C---CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 59 QFSDY------PWPDSV--T---TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 59 ~~~~~------~~~~~~--~---~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
.+.+. .+.... . .....+..+.+.|.+.+.+. ++ .+.++++|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------- 142 (405)
T PRK08850 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGE----------------- 142 (405)
T ss_pred EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeC-----------------
Confidence 11000 000000 0 01112344555566655554 46 788899999998765
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.|++.++ .++.+|.||.|.|..|...+
T Consensus 143 -----~~~~v~~~~g-----~~~~a~lvIgADG~~S~vR~ 172 (405)
T PRK08850 143 -----SEAWLTLDNG-----QALTAKLVVGADGANSWLRR 172 (405)
T ss_pred -----CeEEEEECCC-----CEEEeCEEEEeCCCCChhHH
Confidence 4466777655 58999999999998864433
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-09 Score=102.08 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=82.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--------cccc------------CCcce--ecCCcccccc-C
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--------WIKT------------VETTM--LQTPKQLYQF-S 61 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--------~~~~------------~~~~~--l~~~~~~~~~-~ 61 (418)
||+|||||++|+++|..|+++|++|+|+|+.+.++.. ..-. .+.+. ...+...+.+ .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999998754210 0000 00000 0000000000 0
Q ss_pred C-----CCCCCC-----CCCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 62 D-----YPWPDS-----VTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 62 ~-----~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
. ..+... ......++..+.+.|.+.+.+.+ . .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~--------------------- 137 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHS--------------------- 137 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecC---------------------
Confidence 0 001100 01122356677777888777776 6 789999999998765
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+...++ .++.+|.||.|+|..|
T Consensus 138 -~~~~v~~~~g-----~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 138 -DHVELTLDDG-----QQLRARLLVGADGANS 163 (385)
T ss_pred -CeeEEEECCC-----CEEEeeEEEEeCCCCC
Confidence 4566766655 4799999999999885
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.4e-09 Score=102.26 Aligned_cols=133 Identities=18% Similarity=0.169 Sum_probs=80.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCC---Cc--------cccc---------cCCccee-cCCcc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDI---GG--------AWIK---------TVETTML-QTPKQ 56 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~---gg--------~~~~---------~~~~~~l-~~~~~ 56 (418)
|.++||+|||||++|+++|..|+++ |++|+|||+.... +. .+.. ..+.+.- ..+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 8899999999999999999999998 9999999995211 00 0000 0000000 00000
Q ss_pred ccccCCC------CCCC---CC--CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCC
Q 014821 57 LYQFSDY------PWPD---SV--TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGN 124 (418)
Q Consensus 57 ~~~~~~~------~~~~---~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 124 (418)
.+.+.+. .+.. .. ......+..+.+.+.+.+... +. .+.++++|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~--------------- 143 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQ--------------- 143 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcC---------------
Confidence 0000000 0000 00 001123445556666655553 56 788899999998755
Q ss_pred CCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 125 GQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 144 -------~~~~v~~~~g-----~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 144 -------GSVRVTLDDG-----ETLTGRLLVAADGSHS 169 (395)
T ss_pred -------CeEEEEECCC-----CEEEeCEEEEecCCCh
Confidence 5577777655 4789999999999875
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.6e-09 Score=101.88 Aligned_cols=135 Identities=18% Similarity=0.226 Sum_probs=82.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-------------ccccc----c------CCcce--ecCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-------------GAWIK----T------VETTM--LQTPKQL 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-------------g~~~~----~------~~~~~--l~~~~~~ 57 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+... ..... . .+.+. ...+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 3799999999999999999999999999999975210 00000 0 00000 0001111
Q ss_pred cccCC------CCCCCC-----CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 58 YQFSD------YPWPDS-----VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 58 ~~~~~------~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
+.+.+ ..+... ......++..+.+.|.+.+.+.++ ++++++++++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------- 142 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSG----------------- 142 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcC-----------------
Confidence 11100 000000 001112344556666666666677 788999999998766
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.|++.++ .++.+|.||.|+|..|....
T Consensus 143 -----~~v~v~~~~g-----~~~~a~~vVgAdG~~S~vR~ 172 (405)
T PRK05714 143 -----DDWLLTLADG-----RQLRAPLVVAADGANSAVRR 172 (405)
T ss_pred -----CeEEEEECCC-----CEEEeCEEEEecCCCchhHH
Confidence 4577777655 57999999999999864333
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=100.98 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=81.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc---cccccC-------------Ccce--e----cCCcccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---AWIKTV-------------ETTM--L----QTPKQLYQF 60 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg---~~~~~~-------------~~~~--l----~~~~~~~~~ 60 (418)
++||+|||||++|+++|..|++.|++|+|+|+.+.+.. .|..+. -++. + ..+...+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999999876421 121100 0000 0 001111111
Q ss_pred CCC-----CCC---CCC-CC-CCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 61 SDY-----PWP---DSV-TT-DFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 61 ~~~-----~~~---~~~-~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
... .+. ... .. ....+..+.+.|.+.+.+.+ + .++ ++++++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~~-------------------- 141 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVDP-------------------- 141 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEecC--------------------
Confidence 100 000 000 00 11235677777877777766 5 566 88899987665
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+.|++.++ .++.+|.||.|+|..|.
T Consensus 142 --~~~~v~~~~g-----~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 142 --DAATLTLADG-----QVLRADLVVGADGAHSW 168 (388)
T ss_pred --CeEEEEECCC-----CEEEeeEEEEeCCCCch
Confidence 4567776655 47999999999998853
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-09 Score=101.90 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=81.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Ccc---------------------cccc-----CCcceec
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA---------------------WIKT-----VETTMLQ 52 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~---------------------~~~~-----~~~~~l~ 52 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.. ++. |... .+-..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 589999999999999999999999999999997521 110 1000 0000000
Q ss_pred ---CCccccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 53 ---TPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
.......+...............+..+.+.|.+.+... ++ .+.++++++++...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRDD------------------- 143 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEcC-------------------
Confidence 00000001000000000011134566777777776665 66 788889999998765
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+.|.+.++ .++.+|.||.|+|..|.
T Consensus 144 ---~~~~v~~~~g-----~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 144 ---DGWELTLADG-----EEIQAKLVIGADGANSQ 170 (391)
T ss_pred ---CeEEEEECCC-----CEEEeCEEEEeCCCCch
Confidence 4577776654 47999999999999863
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=89.83 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=90.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-cccc--cCCcceecCCcccc-ccCCCCCCCCCCCCC-CChhH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQLY-QFSDYPWPDSVTTDF-PDHNQ 78 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 78 (418)
.||+||||||+||+||++|++.|.+++|||++-.+|| .|-- .++...++.|+..+ .=...++.+.....+ .+..+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 5999999999999999999999999999999988865 5665 66666666665432 111222222112112 24456
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+...+...+-+.+. +++....|+++...+ +.++++. --.|+.....+-.-...++++++||-||
T Consensus 111 ~~skl~~~a~~aGa--ki~n~~~veDvi~r~--~~rVaGv------------VvNWt~V~~~~lhvDPl~i~a~~VvDaT 174 (262)
T COG1635 111 FASKLAARALDAGA--KIFNGVSVEDVIVRD--DPRVAGV------------VVNWTPVQMAGLHVDPLTIRAKAVVDAT 174 (262)
T ss_pred HHHHHHHHHHhcCc--eeeecceEEEEEEec--CCceEEE------------EEecchhhhcccccCcceeeEEEEEeCC
Confidence 66666666666787 788888999988766 1111100 0123322221111123589999999999
Q ss_pred ccC
Q 014821 159 GRF 161 (418)
Q Consensus 159 G~~ 161 (418)
|..
T Consensus 175 GHd 177 (262)
T COG1635 175 GHD 177 (262)
T ss_pred CCc
Confidence 965
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=100.80 Aligned_cols=132 Identities=21% Similarity=0.265 Sum_probs=86.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccc---c------CCccee-------cC-Cccc-------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIK---T------VETTML-------QT-PKQL------- 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~---~------~~~~~l-------~~-~~~~------- 57 (418)
.+||+|||||++|+++|..|++.|++|+|||+.+ .+-..-+. . ...+-+ .. +...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 5899999999999999999999999999999972 21100000 0 000000 00 1111
Q ss_pred ---cccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 58 ---YQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 58 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
..|..............++..+...|.+.+...+ + ++.++++|+.++.++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~~----------------------~~ 137 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQDG----------------------DG 137 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEcC----------------------Cc
Confidence 1111111111112233467788888888888765 6 799999999999887 44
Q ss_pred eEEEEe-cCCCCceeEEEeCEEEEeeccCCC
Q 014821 134 WTVAVE-DAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 134 ~~v~~~-~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
..+++. ++ +++.||.||-|.|.+|.
T Consensus 138 v~v~l~~dG-----~~~~a~llVgADG~~S~ 163 (387)
T COG0654 138 VTVTLSFDG-----ETLDADLLVGADGANSA 163 (387)
T ss_pred eEEEEcCCC-----cEEecCEEEECCCCchH
Confidence 567776 55 49999999999999873
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.5e-09 Score=101.61 Aligned_cols=133 Identities=19% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Ccc---ccc---cC------CcceecCCccccccCCC-
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA---WIK---TV------ETTMLQTPKQLYQFSDY- 63 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~---~~~---~~------~~~~l~~~~~~~~~~~~- 63 (418)
|+.++|+|||||++|+++|..|+++|++++|+|+.+.. |.. +.. .. +......+.....+...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 67789999999999999999999999999999997632 111 000 00 00000001111111000
Q ss_pred --CCCC-CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 64 --PWPD-SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 64 --~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
.... ........+..+.+.|. +.+... .++++++|++++..+ +.++|++.+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~-~i~~~~~v~~i~~~~----------------------~~v~v~~~~ 137 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALR---AAFPAE-RYHLGETLVGFEQDG----------------------DRVTARFAD 137 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHH---HhCCCc-EEEcCCEEEEEEecC----------------------CeEEEEECC
Confidence 0000 00001112333333332 333321 588999999998765 457777776
Q ss_pred CCCCceeEEEeCEEEEeeccCCCC
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
+ .++.+|.||.|.|..|..
T Consensus 138 g-----~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 138 G-----RRETADLLVGADGGRSTV 156 (386)
T ss_pred C-----CEEEeCEEEECCCCCchH
Confidence 5 589999999999998633
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.6e-09 Score=101.90 Aligned_cols=132 Identities=21% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc------ccc------c---CCcce-ecCCccccccCC---
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK------T---VETTM-LQTPKQLYQFSD--- 62 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~------~~~------~---~~~~~-l~~~~~~~~~~~--- 62 (418)
..+||+|||||++|+++|..|++.|++|+|+|+.+.++.. +.. . .+.+. ...+...+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 3579999999999999999999999999999998755321 000 0 00000 000011111100
Q ss_pred ------CCCCC------CCCCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 63 ------YPWPD------SVTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 63 ------~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
.+... ........+..+.+.|.+.+.+.+ + ++++++++++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~-------------------- 140 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQDG-------------------- 140 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecCC--------------------
Confidence 00100 000012356667777777776654 5 688889999998655
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+.+.++ .++.+|.||.|+|..|
T Consensus 141 --~~v~v~~~~g-----~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 141 --DGVTVFDQQG-----NRWTGDALIGCDGVKS 166 (396)
T ss_pred --CceEEEEcCC-----CEEecCEEEECCCcCh
Confidence 4466766555 4799999999999885
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=99.29 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--------c-----------CCcceecCCcccc-ccCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--------T-----------VETTMLQTPKQLY-QFSDY 63 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--------~-----------~~~~~l~~~~~~~-~~~~~ 63 (418)
+||+||||||+|+++|+.|++.|++|+|+|+....+..+.. . ..+..+..|.... .+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~- 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGR- 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEecc-
Confidence 58999999999999999999999999999997643211110 0 0011111111100 0000
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC-
Q 014821 64 PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK- 142 (418)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 142 (418)
...........++..+.++|...+.+.|. .+... .+.++..... .++.+.|++...+
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~-------------------~~~~~~v~~~~~~~ 137 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPAD-------------------ADDPYTLHYISSDS 137 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccC-------------------CCceEEEEEeeccc
Confidence 01100001125778888899999988888 67554 5777654220 0234666653221
Q ss_pred ---CCceeEEEeCEEEEeeccCCCCCC
Q 014821 143 ---NHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 143 ---~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
.+...++.++.||.|+|..|....
T Consensus 138 ~~~~g~~~~i~a~~VIgADG~~S~v~~ 164 (398)
T TIGR02028 138 GGPSGTRCTLEVDAVIGADGANSRVAK 164 (398)
T ss_pred cccCCCccEEEeCEEEECCCcchHHHH
Confidence 133458999999999998864433
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=102.13 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=84.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---cCC-----------------cceec------CCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---TVE-----------------TTMLQ------TPKQ 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~~~-----------------~~~l~------~~~~ 56 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.+....+. ... +.... ....
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 579999999999999999999999999999998755321110 000 00000 0000
Q ss_pred ccccCCCCCCCC-C-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 57 LYQFSDYPWPDS-V-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 57 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
...+...+.... . .....++..+..+|.+.+.+. +. .+.+++++++++.++ +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------------~~ 158 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQHD----------------------DG 158 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEcC----------------------CE
Confidence 011110000000 0 011134556778888877775 56 789999999998766 44
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+++.+.+ ...++.+|+||.|+|..|.
T Consensus 159 v~v~~~~~~--g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 159 VTLTVETPD--GPYTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEEECCC--CcEEEEeCEEEECCCCCcH
Confidence 666665431 2357999999999998863
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=98.75 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=79.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC------Ccc--ccc------cC---Ccce-ecCCccccccC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GGA--WIK------TV---ETTM-LQTPKQLYQFS--- 61 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~------gg~--~~~------~~---~~~~-l~~~~~~~~~~--- 61 (418)
++||+|||||++|+++|..|+++|++++|+|+.+.. +.. +.. .. +.+. ...+...+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 589999999999999999999999999999998641 110 000 00 0000 00011111110
Q ss_pred ---CCCCCCCC---CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 62 ---DYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 62 ---~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
..++.... .....++..+.+.|.+.+...+. .+.+++++++++... +....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~---------------------~~~~~ 138 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD---------------------SDRPY 138 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC---------------------CCceE
Confidence 01111100 00111234555555555556677 799999999987622 12334
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
|++.. +|...++.+|.||.|.|..|..
T Consensus 139 V~~~~--~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 139 VTYEK--DGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred EEEEc--CCeEEEEEeCEEEECCCCCCch
Confidence 55532 2445689999999999999643
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=100.62 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=80.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC--c-cccccCCcce----------e---cCCccccccC------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G-AWIKTVETTM----------L---QTPKQLYQFS------ 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g--g-~~~~~~~~~~----------l---~~~~~~~~~~------ 61 (418)
+||+|||||++|+++|..|+++|++|+|+|+.+... + .+.....+.. + ..+...+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 489999999999999999999999999999987542 1 1110000000 0 0000011110
Q ss_pred --CCC---CCCCC--CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 62 --DYP---WPDSV--TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 62 --~~~---~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
.++ ..... .....++..+...|.+.... +. +++++++|++++..+ +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~~----------------------~~v 135 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEHR----------------------DGV 135 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEECC----------------------CeE
Confidence 000 00000 00123455566555554432 45 799999999998766 557
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+|++.++ .++.+|.||.|.|..|....
T Consensus 136 ~v~~~~g-----~~~~~d~vIgADG~~S~vR~ 162 (391)
T PRK07588 136 RVTFERG-----TPRDFDLVIGADGLHSHVRR 162 (391)
T ss_pred EEEECCC-----CEEEeCEEEECCCCCccchh
Confidence 7777665 46899999999999864443
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-08 Score=97.29 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=81.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---------ccccc----cC-------CcceecCCc----ccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---------GAWIK----TV-------ETTMLQTPK----QLY 58 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---------g~~~~----~~-------~~~~l~~~~----~~~ 58 (418)
++||+|||||++|+++|..|+++ ++|+++|+.+..+ +.... .. +...+..+. ...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 38999999999999999999999 9999999976431 11110 00 000000000 000
Q ss_pred ccCCCCCCCCC--CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 59 QFSDYPWPDSV--TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 59 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
.+.. +....+ .....++..+.+.+.+.+ ..++ .+.+++.+.+++..+ +.|.|
T Consensus 80 ~~~~-~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~----------------------~~~~v 133 (351)
T PRK11445 80 DLAN-SLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRED----------------------DGYHV 133 (351)
T ss_pred cccc-cchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcC----------------------CEEEE
Confidence 0100 000000 111245677777777643 4466 788999999998766 45777
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
..... +...++.||.||.|+|..|.
T Consensus 134 ~~~~~--g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 134 IFRAD--GWEQHITARYLVGADGANSM 158 (351)
T ss_pred EEecC--CcEEEEEeCEEEECCCCCcH
Confidence 75332 33347999999999999863
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=98.78 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=81.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC-----Cccccc-------c---CCcce--ecCCccccc------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAWIK-------T---VETTM--LQTPKQLYQ------ 59 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~-----gg~~~~-------~---~~~~~--l~~~~~~~~------ 59 (418)
.+||+|||||++|+++|..|+++|++|+|+|+++.. +..+.. . .+.+. -..+...++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 589999999999999999999999999999997532 111110 0 00000 000000111
Q ss_pred ------cCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 60 ------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 60 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
|...+.+. ....+.++..+.+.|.+.+.+. ++ .+.++++|+++...+ +.
T Consensus 86 ~~~~~~~~~~~~~~-~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---------------------~~ 141 (407)
T PRK06185 86 TVTLADFSRLPTPY-PYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---------------------GR 141 (407)
T ss_pred EEEecchhhcCCCC-CcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---------------------CE
Confidence 11111100 0112345667778887777665 66 788899999998765 12
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...|.+... +...++.+|.||.|+|..|
T Consensus 142 v~~v~~~~~--~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 142 VTGVRARTP--DGPGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEEEEEcC--CCcEEEEeCEEEECCCCch
Confidence 222444432 1225799999999999986
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=97.00 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=83.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---ccccccCCccee-----------c---CCcccccc-C--
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVETTML-----------Q---TPKQLYQF-S-- 61 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---g~~~~~~~~~~l-----------~---~~~~~~~~-~-- 61 (418)
.++||+|||||++|+++|..|+++|++++|+|+.+.+. +.-.-...+..+ . .+...+.+ .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 46899999999999999999999999999999988541 110000000000 0 00000000 0
Q ss_pred ----CCCCCCCCCCC---CCChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC-
Q 014821 62 ----DYPWPDSVTTD---FPDHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG- 132 (418)
Q Consensus 62 ----~~~~~~~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (418)
..++....... ..++..+.+.|.+.+.. .+. ++.+++++++++..+ ++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---------------------~~~ 140 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---------------------DGT 140 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---------------------CCc
Confidence 01111100011 13455666767666554 356 799999999998865 12
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
.+.|++.++ .++.+|.||.|+|..|...+
T Consensus 141 ~~~v~~~~g-----~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 141 VTSVTLSDG-----ERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred EEEEEeCCC-----CEEECCEEEECCCCChHHHH
Confidence 245666544 47999999999999864433
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=98.57 Aligned_cols=58 Identities=26% Similarity=0.449 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-EEEecCCCCceeEEEeCE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDAKNHSTEVHQVDF 153 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~i~~d~ 153 (418)
....+.+.+...+.+.|. .++.+++|++++... +.|+ |.+.++ .+.+|.
T Consensus 145 ~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~gv~~~~g------~i~ad~ 194 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVDG----------------------GRVTGVRTSDG------EIRADR 194 (358)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEESEEEEEEEEET----------------------TEEEEEEETTE------EEEECE
T ss_pred cccchhhhhHHHHHHhhh--hccccccccchhhcc----------------------ccccccccccc------ccccce
Confidence 467788888888888998 899999999999987 5577 887776 499999
Q ss_pred EEEeeccCC
Q 014821 154 VILCVGRFS 162 (418)
Q Consensus 154 vIlAtG~~~ 162 (418)
||+|+|.++
T Consensus 195 vV~a~G~~s 203 (358)
T PF01266_consen 195 VVLAAGAWS 203 (358)
T ss_dssp EEE--GGGH
T ss_pred eEecccccc
Confidence 999999873
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=97.58 Aligned_cols=132 Identities=18% Similarity=0.217 Sum_probs=81.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-------cC------------Ccce-ecCCccccccCC-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-------TV------------ETTM-LQTPKQLYQFSD- 62 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-------~~------------~~~~-l~~~~~~~~~~~- 62 (418)
.||+|||||++|+++|..|++.|++|+|+|+.+.....+.. .. +.+. ...+...+.+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 79999999999999999999999999999986321110000 00 0000 000111111100
Q ss_pred -------CCCCCCC-CCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 63 -------YPWPDSV-TTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 63 -------~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
++..... ......+..+.+.|.+.+.+.+ . .++++++++++...+ +.
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~----------------------~~ 137 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISHN----------------------DY 137 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEcC----------------------Ce
Confidence 0000000 1122357778888888877765 5 678889999998765 44
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCCCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSDVP 165 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p 165 (418)
+.|.+.++ ++.+|.||.|.|..|...
T Consensus 138 v~v~~~~~------~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 138 SIIKFDDK------QIKCNLLIICDGANSKVR 163 (374)
T ss_pred EEEEEcCC------EEeeCEEEEeCCCCchhH
Confidence 66666432 799999999999986443
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=96.74 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=34.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|+++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 6789999999999999999999999999999999753
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-09 Score=92.13 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=78.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-cccc--cCCcceecCCccccc-cCCCCCCCCCCCCC-CChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQLYQ-FSDYPWPDSVTTDF-PDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 77 (418)
.+||+||||||+||++|+.|++.|+++++||++..+|| .|.- .++...++.|...+- =...++.......| .+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 48999999999999999999999999999999988886 4655 666666666654321 00111111111122 2456
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++...|...+-+.|. +++-...|+++...+ +.++.+. --.|+.....+-.-...+++++.||-|
T Consensus 97 ~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~--~~rV~Gv------------ViNWt~V~~~glHvDPl~i~ak~ViDa 160 (230)
T PF01946_consen 97 EFTSTLASKAIDAGA--KIFNLTSVEDVIVRE--DDRVAGV------------VINWTPVEMAGLHVDPLTIRAKVVIDA 160 (230)
T ss_dssp HHHHHHHHHHHTTTE--EEEETEEEEEEEEEC--SCEEEEE------------EEEEHHHHTT--T-B-EEEEESEEEE-
T ss_pred HHHHHHHHHHhcCCC--EEEeeeeeeeeEEEc--CCeEEEE------------EEEehHHhHhhcCCCcceEEEeEEEeC
Confidence 666776666666787 777777888887655 1111000 001111111111122368999999999
Q ss_pred eccC
Q 014821 158 VGRF 161 (418)
Q Consensus 158 tG~~ 161 (418)
||.-
T Consensus 161 TGHd 164 (230)
T PF01946_consen 161 TGHD 164 (230)
T ss_dssp --SS
T ss_pred CCCc
Confidence 9965
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-08 Score=97.91 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=84.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---ccccccCCcce------e-------cCCccccccCC-----
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVETTM------L-------QTPKQLYQFSD----- 62 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---g~~~~~~~~~~------l-------~~~~~~~~~~~----- 62 (418)
+||+|||||++|+++|..|+++|++++|||+.+.+. ....-....+. + ..+...+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987542 11100000000 0 00111111110
Q ss_pred ---CCCCC--C--CCCCCCChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 63 ---YPWPD--S--VTTDFPDHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 63 ---~~~~~--~--~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
.+... . +......+..+.+.|.+.+.+ .+.. .++++++|++++.+. +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~-~i~~~~~v~~~~~~~----------------------~~~ 137 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPD-AVRTGHRVVGFEQDA----------------------DVT 137 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCc-EEEcCCEEEEEEecC----------------------Cce
Confidence 00000 0 001113566777777666544 4531 589999999998765 335
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
.+.+.++.++...++.+|.||.|.|..|..
T Consensus 138 ~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 138 VVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred EEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 566655544556789999999999998643
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=97.61 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=82.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Cccccc----c--C---------CcceecCCccc-cccCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGAWIK----T--V---------ETTMLQTPKQL-YQFSD 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~~~~----~--~---------~~~~l~~~~~~-~~~~~ 62 (418)
++||+||||||+|+++|..|+++|++|+|+|+.... |+.... . . .+.++..|... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 589999999999999999999999999999987531 221110 0 0 01111111110 00000
Q ss_pred CCCCCCCCCC--CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 63 YPWPDSVTTD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 63 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
. ... ... ..++..+.++|.+.+.+.|. ++.. ..+.+++.... .++.+.|++.+
T Consensus 119 ~-~~~--~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~-~~v~~i~~~~~-------------------~~~~~~v~~~~ 173 (450)
T PLN00093 119 T-LKP--HEYIGMVRREVLDSFLRERAQSNGA--TLIN-GLFTRIDVPKD-------------------PNGPYVIHYTS 173 (450)
T ss_pred c-CCC--CCeEEEecHHHHHHHHHHHHHHCCC--EEEe-ceEEEEEeccC-------------------CCCcEEEEEEe
Confidence 0 000 111 15788888899998888887 6654 46777764320 01346666643
Q ss_pred C----CCCceeEEEeCEEEEeeccCCC
Q 014821 141 A----KNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 141 ~----~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
. .+++..++++|.||.|+|..|.
T Consensus 174 ~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 174 YDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred ccccccCCCccEEEeCEEEEcCCcchH
Confidence 2 1133468999999999998863
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=98.22 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=81.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccc------cccCCc-c------ee-------cCCccccccCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAW------IKTVET-T------ML-------QTPKQLYQFSDY 63 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~------~~~~~~-~------~l-------~~~~~~~~~~~~ 63 (418)
||+|||||++|+++|..|+++| ++|+|+|+.+.+...- ....+. . .+ ..+...+.+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 9999999976432100 000000 0 00 001111111100
Q ss_pred ------CCC--C-CC--CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 64 ------PWP--D-SV--TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 64 ------~~~--~-~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
.+. . .. ......+..+.+.|.+.+... ++ +++++++|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~---------------------- 136 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQ---------------------- 136 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcC----------------------
Confidence 000 0 00 001134567778888877774 77 788899999998765
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.++|++.++ .++.||.||.|.|..|
T Consensus 137 ~~~~v~~~~g-----~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 137 DYVRVTLDNG-----QQLRAKLLIAADGANS 162 (382)
T ss_pred CeEEEEECCC-----CEEEeeEEEEecCCCh
Confidence 4577776554 4799999999999885
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=89.94 Aligned_cols=127 Identities=24% Similarity=0.378 Sum_probs=81.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCcc--------------------------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQ-------------------------- 56 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~-------------------------- 56 (418)
.+|+|||+|++|+++|..|+..|++|+||||...+||.... +.++....--+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 57999999999999999999999999999999999997766 333322211110
Q ss_pred --ccccCCCCCCCC-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 57 --LYQFSDYPWPDS-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 57 --~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
.+.|..-..++. ....|.-...+....+ ++. .++ ++.++++|+.+-..+ +.
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak-~LA-tdL--~V~~~~rVt~v~~~~----------------------~~ 135 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAK-FLA-TDL--TVVLETRVTEVARTD----------------------ND 135 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHH-HHh-ccc--hhhhhhhhhhheecC----------------------Ce
Confidence 111111100000 0011221122222222 221 255 788999999998876 78
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
|++++.++. ....+|.||||.-+
T Consensus 136 W~l~~~~g~----~~~~~d~vvla~PA 158 (331)
T COG3380 136 WTLHTDDGT----RHTQFDDVVLAIPA 158 (331)
T ss_pred eEEEecCCC----cccccceEEEecCC
Confidence 999997764 57889999999864
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=96.97 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=82.3
Q ss_pred EEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceec-----CCccc---------------cccC-----
Q 014821 7 AIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQ-----TPKQL---------------YQFS----- 61 (418)
Q Consensus 7 vIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~-----~~~~~---------------~~~~----- 61 (418)
+|||||++|+++|..|+++|.+|+|+|+++.+|+.+...-.+ +++ ..... ..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~g-rcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGG-RCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCc-eEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 699999999999999999999999999999887654321100 000 00000 0000
Q ss_pred ------CCCCCC-CCCCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 62 ------DYPWPD-SVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 62 ------~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
..++.. .....|| ....+.+.+...+++.++ .+.++++|++++...
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~---------------------- 135 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDD---------------------- 135 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecC----------------------
Confidence 000100 0012232 346778888888888888 899999999997655
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.|.+.+. + .++.+|.||+|+|..
T Consensus 136 ~~~~v~~~-~-----~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 136 NGFGVETS-G-----GEYEADKVILATGGL 159 (400)
T ss_pred CeEEEEEC-C-----cEEEcCEEEECCCCc
Confidence 45666652 2 368999999999987
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-08 Score=100.18 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=82.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC---CccccccCCcceecC------CccccccCCC-CCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---GGAWIKTVETTMLQT------PKQLYQFSDY-PWPDSVTTD 72 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~---gg~~~~~~~~~~l~~------~~~~~~~~~~-~~~~~~~~~ 72 (418)
.+||+|||||++|+++|..|++.|++|+++|+...+ .|.|......+.+.. +.....+.+. +........
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg 187 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYG 187 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCccc
Confidence 589999999999999999999999999999986433 234443211111100 0000011110 000000112
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE-EEecCCCCceeEEEe
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV-AVEDAKNHSTEVHQV 151 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~i~~ 151 (418)
...+..+.+.+.+.+.+.++ .+ ++++|+++...+ +.+.+ .+.++ .++.+
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~----------------------~~~~vv~~~dG-----~~i~A 237 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEAS----------------------DGLRLVACEDG-----RVIPC 237 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcC----------------------CcEEEEEEcCC-----cEEEC
Confidence 25677788888888777787 55 678999988765 33443 33444 57999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
+.||+|+|..|
T Consensus 238 ~lVI~AdG~~S 248 (529)
T PLN02697 238 RLATVASGAAS 248 (529)
T ss_pred CEEEECCCcCh
Confidence 99999999985
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-08 Score=99.52 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
+.+||+|||||..|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 368999999999999999999999999999999764
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-08 Score=71.71 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=60.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQ 84 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (418)
+|+|||||+.|+.+|..|++.+.+++++++.+.+.. ....++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 589999999999999999999999999999874420 11257788888
Q ss_pred HHHHhcCcccceEeeeEEEEEEEcC
Q 014821 85 SYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 85 ~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
+..++.++ ++.+++.+.+++.++
T Consensus 48 ~~l~~~gV--~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 48 EYLRKRGV--EVHTNTKVKEIEKDG 70 (80)
T ss_dssp HHHHHTTE--EEEESEEEEEEEEET
T ss_pred HHHHHCCC--EEEeCCEEEEEEEeC
Confidence 88888899 899999999999987
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-08 Score=95.34 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=82.5
Q ss_pred cEEEEcCCHHHHHHHHHH--HhCCCceEEEeeCCCCC--c--cccccCCcce-e-----cC-CccccccCCCCCCC-CCC
Q 014821 5 QIAIVGAGVSGLLACKYL--LLKGFHPIVFEARSDIG--G--AWIKTVETTM-L-----QT-PKQLYQFSDYPWPD-SVT 70 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L--~~~~~~v~iie~~~~~g--g--~~~~~~~~~~-l-----~~-~~~~~~~~~~~~~~-~~~ 70 (418)
||+|||||+||+++|..| ++.|.+|+|||+....+ . .|....+... + .. +.....+....... ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 66789999999977652 1 3333111111 0 00 00011111111000 001
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
.....+..+.+++...+...+ .+.++++|.+|+..+ ..+.|.+.++ .++.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~~----------------------~~~~v~~~~g-----~~i~ 130 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEETG----------------------DGVLVVLADG-----RTIR 130 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEecC----------------------ceEEEEECCC-----CEEE
Confidence 223467778888887777434 478889999999877 4567777777 5899
Q ss_pred eCEEEEeeccC
Q 014821 151 VDFVILCVGRF 161 (418)
Q Consensus 151 ~d~vIlAtG~~ 161 (418)
|+.||-|+|..
T Consensus 131 a~~VvDa~g~~ 141 (374)
T PF05834_consen 131 ARVVVDARGPS 141 (374)
T ss_pred eeEEEECCCcc
Confidence 99999999965
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=93.64 Aligned_cols=140 Identities=16% Similarity=0.300 Sum_probs=78.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCc-cccc--cCCcceecCCccc-cccCCCCCCCCCCCCCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQL-YQFSDYPWPDSVTTDFP--- 74 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~--- 74 (418)
.+||+|||||++|+.+|+.|++. +++|+|||++..+|| .|.. .+....++.+... +.-...++.. ...|+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~--~dgy~vv~ 169 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE--QENYVVIK 169 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc--CCCeeEec
Confidence 47999999999999999999975 899999999888765 4433 1111112222111 1111222221 11111
Q ss_pred ChhHHHHHHHHHH-HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC---ceeEEE
Q 014821 75 DHNQVLDYIQSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH---STEVHQ 150 (418)
Q Consensus 75 ~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~i~ 150 (418)
+..++...|...+ ++.++ +++.++.++++..++ + +..+ ..-.|.....++.++ ....+.
T Consensus 170 ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~--g-rVaG------------VVvnw~~v~~~~~~~s~~dp~~I~ 232 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG--D-RVGG------------VVTNWALVAQNHDTQSCMDPNVME 232 (357)
T ss_pred chHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecC--C-EEEE------------EEeecchhhhccCCCCccceeEEE
Confidence 2234444455444 34577 788888999988754 0 0000 000122222222221 234799
Q ss_pred eCEEEEeeccC
Q 014821 151 VDFVILCVGRF 161 (418)
Q Consensus 151 ~d~vIlAtG~~ 161 (418)
+++||+|||..
T Consensus 233 AkaVVlATGh~ 243 (357)
T PLN02661 233 AKVVVSSCGHD 243 (357)
T ss_pred CCEEEEcCCCC
Confidence 99999999965
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=99.11 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccc-cccCCcce----ec---CCccccc----cC--CCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAW-IKTVETTM----LQ---TPKQLYQ----FS--DYPW 65 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~-~~~~~~~~----l~---~~~~~~~----~~--~~~~ 65 (418)
|..+||+|||||+||++||..+++.|.+|+++|++. .+|+.- .....+.. +. .....+. -. .+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 457899999999999999999999999999999973 555311 11111100 00 0000000 00 0111
Q ss_pred CCC------C-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 66 PDS------V-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 66 ~~~------~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
... + ......+..+...+...+... ++ .+ +++.|.++..++ +....|.
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV--~I-~q~~V~~Li~e~---------------------grV~GV~ 137 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNL--DL-FQGEVEDLIVEN---------------------GRVVGVV 137 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEecC---------------------CEEEEEE
Confidence 000 0 011224455667777766655 55 44 567888887654 1223355
Q ss_pred EecCCCCceeEEEeCEEEEeeccC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.++ ..+.|+.||+|||++
T Consensus 138 t~dG-----~~I~Ak~VIlATGTF 156 (618)
T PRK05192 138 TQDG-----LEFRAKAVVLTTGTF 156 (618)
T ss_pred ECCC-----CEEECCEEEEeeCcc
Confidence 5554 589999999999976
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.8e-08 Score=94.14 Aligned_cols=138 Identities=19% Similarity=0.163 Sum_probs=78.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC------CccccccCCccee-------------cCCccccccCC-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GGAWIKTVETTML-------------QTPKQLYQFSD- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~------gg~~~~~~~~~~l-------------~~~~~~~~~~~- 62 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.. +.... ..+.+.+ ..+...+.+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l-~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVL-EQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeE-CHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 479999999999999999999999999999998741 11000 0000000 00111111100
Q ss_pred -----CCCCCCCC-CC--CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 63 -----YPWPDSVT-TD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 63 -----~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
.++..... .. ...+..+...|.+.+.+.+. .+.++.+++.+.... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~---------------------~~~~ 137 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLA---------------------GDRP 137 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecC---------------------CCcc
Confidence 11110000 00 01233455556666666676 688888877775433 1234
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
.|++... |...++.+|.||.|.|..|..-.
T Consensus 138 ~V~~~~~--g~~~~i~adlvIGADG~~S~VR~ 167 (390)
T TIGR02360 138 YVTFERD--GERHRLDCDFIAGCDGFHGVSRA 167 (390)
T ss_pred EEEEEEC--CeEEEEEeCEEEECCCCchhhHH
Confidence 5666421 33357999999999999974433
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=96.67 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
..+...+...+.+.|. .+..+++|+++..++ +.|.|.+.++. +.+.++.++.||+
T Consensus 155 ~rl~~~l~~~a~~~Ga--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~~-g~~~~i~a~~VVn 209 (502)
T PRK13369 155 ARLVVLNALDAAERGA--TILTRTRCVSARREG----------------------GLWRVETRDAD-GETRTVRARALVN 209 (502)
T ss_pred HHHHHHHHHHHHHCCC--EEecCcEEEEEEEcC----------------------CEEEEEEEeCC-CCEEEEEecEEEE
Confidence 3444455566777888 889999999998765 55778777765 6667899999999
Q ss_pred eeccCC
Q 014821 157 CVGRFS 162 (418)
Q Consensus 157 AtG~~~ 162 (418)
|+|.++
T Consensus 210 AaG~wa 215 (502)
T PRK13369 210 AAGPWV 215 (502)
T ss_pred CCCccH
Confidence 999874
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-08 Score=95.35 Aligned_cols=135 Identities=19% Similarity=0.295 Sum_probs=82.8
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccccc-----CCcceec-------CCccc---------------
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT-----VETTMLQ-------TPKQL--------------- 57 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~-----~~~~~l~-------~~~~~--------------- 57 (418)
||+|||+|.||++||+.++++|.+|+|+|+....||.-... ......+ ++...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999988766632221 1110000 00000
Q ss_pred ---------------cccCCCCCCC-------------CCCC-------------CCCChhHHHHHHHHHHHhcCcccce
Q 014821 58 ---------------YQFSDYPWPD-------------SVTT-------------DFPDHNQVLDYIQSYASHFDLRKHI 96 (418)
Q Consensus 58 ---------------~~~~~~~~~~-------------~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~v 96 (418)
+.-...++.. .... .......+...+.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence 0000011111 0000 011356677888888999998 89
Q ss_pred EeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 97 KFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 97 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++++++++..++ +...-+...+..++....+.++.||+|||.+.
T Consensus 159 ~~~~~~~~Li~e~---------------------g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 159 RFNTRVTDLITED---------------------GRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp EESEEEEEEEEET---------------------TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred eccceeeeEEEeC---------------------CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 9999999999876 22233555544557778999999999999873
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-08 Score=95.93 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=76.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCC-cce------e-----------cCCcc--cccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVE-TTM------L-----------QTPKQ--LYQF 60 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~-~~~------l-----------~~~~~--~~~~ 60 (418)
.+|+|||||++||++|..|+++| ++|+|||+.+.++..-.. ..| +++ + ..+.. .+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 36999999999999999999998 699999998765421000 000 000 0 00000 0000
Q ss_pred CCC--------CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 61 SDY--------PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 61 ~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
... ............+..+.+.|...+. .. .+.++++|++++..+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~--~v~~~~~v~~i~~~~----------------------~ 134 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EG--IASFGKRATQIEEQA----------------------E 134 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--Cc--eEEcCCEEEEEEecC----------------------C
Confidence 000 0000000111344555555554432 22 478899999998765 5
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.|.|+..++ .++.+|.||.|+|..|
T Consensus 135 ~~~v~~~~g-----~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 135 EVQVLFTDG-----TEYRCDLLIGADGIKS 159 (414)
T ss_pred cEEEEEcCC-----CEEEeeEEEECCCccH
Confidence 588887665 4799999999999986
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-08 Score=94.79 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=83.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---ccccccCCcce-------------ecCCccccccCCC----
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVETTM-------------LQTPKQLYQFSDY---- 63 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---g~~~~~~~~~~-------------l~~~~~~~~~~~~---- 63 (418)
.+|+|||||++|+++|..|+++|++|+|+|+.+.+. ....-...+.. ...+...+.+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 789999999999999999999999999999987542 11000000000 0000011111110
Q ss_pred -----CC---C-CCCCCC--CCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 64 -----PW---P-DSVTTD--FPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 64 -----~~---~-~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
.+ . ..+... ...+..+.+.|.+.+... ++ .++++++|++++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~---------------------- 138 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTG---------------------- 138 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCC----------------------
Confidence 00 0 000011 135667777777766554 56 789999999998755
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.+++.++. ...++.+|.||.|.|..|....
T Consensus 139 ~~v~v~~~~~~--~~~~~~adlvIgADG~~S~vR~ 171 (400)
T PRK06475 139 NSITATIIRTN--SVETVSAAYLIACDGVWSMLRA 171 (400)
T ss_pred CceEEEEEeCC--CCcEEecCEEEECCCccHhHHh
Confidence 44666664332 1247899999999999974433
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.1e-08 Score=97.09 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=83.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHh----CCCceEEEeeCCCCC----------ccccc-----c------------CCcce-e
Q 014821 4 KQIAIVGAGVSGLLACKYLLL----KGFHPIVFEARSDIG----------GAWIK-----T------------VETTM-L 51 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~----~~~~v~iie~~~~~g----------g~~~~-----~------------~~~~~-l 51 (418)
+||+|||||++|+++|..|++ +|++|+|||+++.+. +.+.. . .+.+. .
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 799999999953211 00000 0 00000 0
Q ss_pred -cCCccccccCC------CCCCCC--C--CCCCCChhHHHHHHHHHHHhcC---cccceEeeeEEEEEEEcCCCCccccc
Q 014821 52 -QTPKQLYQFSD------YPWPDS--V--TTDFPDHNQVLDYIQSYASHFD---LRKHIKFNRKVVGIEFEGLSGEDEKS 117 (418)
Q Consensus 52 -~~~~~~~~~~~------~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~~~~~~~~~~ 117 (418)
..+...+.+.+ ..+... . .....++..+.+.|.+.+.+.+ + .+.++++|++++....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~~---- 154 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYPN---- 154 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEecccccc----
Confidence 00101111100 000100 0 0112345667777777777664 5 7889999999986310000
Q ss_pred ccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 118 WSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
+.....+|++.++ +++.+|.||.|.|..|......
T Consensus 155 -----------~~~~~v~v~~~~g-----~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 155 -----------DNSNWVHITLSDG-----QVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred -----------CCCCceEEEEcCC-----CEEEeeEEEEecCCCChhHHHc
Confidence 0123466766655 5899999999999997544443
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.6e-09 Score=102.74 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=34.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccC----Cccee----cC--Ccc----ccccCCCCCC--CC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV----ETTML----QT--PKQ----LYQFSDYPWP--DS 68 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~----~~~~l----~~--~~~----~~~~~~~~~~--~~ 68 (418)
||||||||++|++||+.+++.|.+|+|+|+.+.+||...... ..... .. ... .......+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 899999999999999999999999999999999998765511 11110 00 000 0000001100 00
Q ss_pred C-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 69 V-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 69 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
+ .........+...+.+.+.+.++ .+.+++.|.++..++ +..+.|.+.+.. | ..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~---------------------~~i~~V~~~~~~-g-~~ 135 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG---------------------GRITGVIVETKS-G-RK 135 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccc---------------------cccccccccccc-c-cc
Confidence 0 01223445566677777777888 899999999998865 334556665532 2 57
Q ss_pred EEEeCEEEEeeccC
Q 014821 148 VHQVDFVILCVGRF 161 (418)
Q Consensus 148 ~i~~d~vIlAtG~~ 161 (418)
++.++.+|-|||..
T Consensus 136 ~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 136 EIRAKVFIDATGDG 149 (428)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 99999999999954
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=92.72 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||++|+++|..|+++|++++|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 69999999999999999999999999999998754
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=93.00 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=31.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
+||+|||||.+|+++|+.|+++|.+|+|||+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5899999999999999999999999999999653
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=94.07 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
..+||||||+|.+|+++|..|++.|.+|+|||+.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 568999999999999999999999999999999763
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=93.66 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
++||+|||||.+|+++|+.|+++ |.+|+|+|+...+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 38999999999999999999998 99999999976543
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=93.96 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=81.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC----CceEEEeeCCCCCcccc--c---c------CCcce----ecCCccccccC--
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG----FHPIVFEARSDIGGAWI--K---T------VETTM----LQTPKQLYQFS-- 61 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~----~~v~iie~~~~~gg~~~--~---~------~~~~~----l~~~~~~~~~~-- 61 (418)
.+||+|||||++|+++|..|+++| ++|+|+|+.+.....-. . . ...+. ...+...+.+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 479999999999999999999987 46999999753210000 0 0 00000 00011111111
Q ss_pred -----------CCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 62 -----------DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 62 -----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
++..+. .....++..+.+.|.+.+...+. .+.+++++++++...
T Consensus 91 ~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~--------------------- 145 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDA--------------------- 145 (398)
T ss_pred CCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecC---------------------
Confidence 111110 11124567788888888888887 788899999997665
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+++++.++. + .++++||.||.|+|.
T Consensus 146 -~~v~v~~~~~~-g-~~~i~a~lvIgADG~ 172 (398)
T PRK06996 146 -DGVTLALGTPQ-G-ARTLRARIAVQAEGG 172 (398)
T ss_pred -CeEEEEECCCC-c-ceEEeeeEEEECCCC
Confidence 45777765432 1 257999999999996
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-07 Score=96.11 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCcc------ccc---cCCccee-----c--CCcccccc----
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGA------WIK---TVETTML-----Q--TPKQLYQF---- 60 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~------~~~---~~~~~~l-----~--~~~~~~~~---- 60 (418)
+++||+|||||++||++|..|+++ |++++|||+.+..... +.. ....+-+ . .+...+.|
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 367999999999999999999995 9999999998643210 000 0000000 0 00000000
Q ss_pred -------------CCCCCCCC-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 61 -------------SDYPWPDS-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 61 -------------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
...+.... ......++..+.+.|.+.+.+.+..-.+.+++++++++.++ +
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~--~-------------- 174 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDE--E-------------- 174 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECC--C--------------
Confidence 00000000 00112345567778888777765311567889999998764 0
Q ss_pred CCCCCCceEEEEecCC---CCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAK---NHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~---~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
.....+|++++.+ +|..++++||+||-|.|+.|.+....
T Consensus 175 ---~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 175 ---GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred ---CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 0123667776532 34557899999999999997544433
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-07 Score=92.10 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=83.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCcccccc-----CCcceec-------CCc----------------
Q 014821 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIKT-----VETTMLQ-------TPK---------------- 55 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~~-----~~~~~l~-------~~~---------------- 55 (418)
||||||+|.+|+++|..++++| .+|+|+|+.+..||.-... ......+ .+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999988765431110 0000000 000
Q ss_pred --------------cccccCCCCCCC-------C--C-C-----CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEE
Q 014821 56 --------------QLYQFSDYPWPD-------S--V-T-----TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106 (418)
Q Consensus 56 --------------~~~~~~~~~~~~-------~--~-~-----~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~ 106 (418)
.++. ...++.. . . . ........+...+...+++.++ +++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 0111 0111100 0 0 0 0112345678888888888898 899999999998
Q ss_pred EcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 107 FEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++ .+...-|.+.+. ++....+.++.||+|+|.++
T Consensus 158 ~~~--------------------~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 158 QDD--------------------QGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred ECC--------------------CCcEEEEEEEeC-CCeEEEEecceEEEecCCCC
Confidence 754 012233444432 23445688999999999874
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=91.40 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGG 40 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg 40 (418)
|+++||+|||||..|+++|..|.++. .+|+|+||.+.+|.
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 78899999999999999999999988 89999999988764
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=96.18 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+||+|||||..|+++|+.|+++|++|+|||+++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 5899999999999999999999999999999965
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=90.17 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=32.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||..|+++|++|++.|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999998643
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-08 Score=70.71 Aligned_cols=48 Identities=33% Similarity=0.536 Sum_probs=40.7
Q ss_pred EEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCc
Q 014821 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPK 55 (418)
Q Consensus 8 IIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~ 55 (418)
|||||++||++|..|++.+++|+|+|+++.+||.+.. .+++..+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999998887 55665555443
|
... |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=91.11 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=75.0
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEE-eeCCCCCccccccCCcceecCC----------ccc---------cccCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVF-EARSDIGGAWIKTVETTMLQTP----------KQL---------YQFSDYP 64 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~ii-e~~~~~gg~~~~~~~~~~l~~~----------~~~---------~~~~~~~ 64 (418)
||+|||||+||+.||..+++.|.+|.++ .+.+.+|..- +.|...-.-. ... .+|.-..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~--Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS--CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S--SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc--chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 7999999999999999999999999999 4444444311 1122111100 000 0110000
Q ss_pred C---CCCC-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEe
Q 014821 65 W---PDSV-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (418)
Q Consensus 65 ~---~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (418)
. +..+ .....++..+.+++++.+... ++ .+ ++.+|+++..+. +...-|.+.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~e~---------------------~~v~GV~~~ 134 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIVEN---------------------GKVKGVVTK 134 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEECT---------------------TEEEEEEET
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEecC---------------------CeEEEEEeC
Confidence 0 1111 112346788899999888875 45 44 568999998866 344557776
Q ss_pred cCCCCceeEEEeCEEEEeeccC
Q 014821 140 DAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 140 ~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++ ..+.+|.||+|||++
T Consensus 135 ~g-----~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 135 DG-----EEIEADAVVLATGTF 151 (392)
T ss_dssp TS-----EEEEECEEEE-TTTG
T ss_pred CC-----CEEecCEEEEecccc
Confidence 66 689999999999964
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-07 Score=90.56 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=47.0
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
....+.+.|. .+...++|+++.++. +.|-|.+.+..+|+..+++++.||.|+|.++
T Consensus 170 ~a~~A~~~Ga--~il~~~~v~~~~re~----------------------~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 170 NARDAAEHGA--EILTYTRVESLRREG----------------------GVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHHhccc--chhhcceeeeeeecC----------------------CEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 3444556677 788889999999988 4788999998889999999999999999874
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=90.06 Aligned_cols=36 Identities=39% Similarity=0.500 Sum_probs=33.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc
Q 014821 5 QIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg 40 (418)
||+|||||+||+++|..|++. |++|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999886665
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.4e-07 Score=90.41 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=35.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|+.+++.|.+|+|||+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 57999999999999999999999999999999887765
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.7e-07 Score=93.07 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
|..+||+|||||.||++||..+++. +.+|+|+||....+
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 7789999999999999999999986 47999999976544
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-06 Score=86.81 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=75.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+. ..+ ..++...+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--~~~~~~~l 227 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PTE--DAELSKEV 227 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999975331 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEc-CCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFE-GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.+..++.++ .+..+++|.+++.. . ++...+...+ +...++.||.||+|+|..
T Consensus 228 ~~~l~~~gI--~i~~~~~v~~i~~~~~---------------------~~~~~~~~~~---g~~~~i~~D~vi~a~G~~- 280 (472)
T PRK05976 228 ARLLKKLGV--RVVTGAKVLGLTLKKD---------------------GGVLIVAEHN---GEEKTLEADKVLVSVGRR- 280 (472)
T ss_pred HHHHHhcCC--EEEeCcEEEEEEEecC---------------------CCEEEEEEeC---CceEEEEeCEEEEeeCCc-
Confidence 777788898 89999999999852 2 1212222222 334579999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 281 --p~~~ 284 (472)
T PRK05976 281 --PNTE 284 (472)
T ss_pred --cCCC
Confidence 6554
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.9e-07 Score=91.35 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=34.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 47999999999999999999999999999999764443
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.7e-07 Score=92.51 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||+|.|||+||..+++.|.+|+|+|+...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999866554
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=91.23 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
|++.||+|||+|.|||+||..+++.|.+|+|+|+.+..+
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 889999999999999999999999999999999976543
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=87.58 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=77.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+. .. ...++...+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~~ 217 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKVV 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999976331 00 113566677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ ++.++++|.+++..+ +...+...++ ...++.||.||+|+|..
T Consensus 218 ~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g---~~~~i~~D~vi~a~G~~-- 268 (461)
T TIGR01350 218 AKALKKKGV--KILTNTKVTAVEKND----------------------DQVVYENKGG---ETETLTGEKVLVAVGRK-- 268 (461)
T ss_pred HHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEeCC---cEEEEEeCEEEEecCCc--
Confidence 777888888 899999999998655 3344444332 23579999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 269 -p~~~ 272 (461)
T TIGR01350 269 -PNTE 272 (461)
T ss_pred -ccCC
Confidence 6554
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=85.95 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=78.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 219 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKLA 219 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999976331 00 114666777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
++..++.++ .+.++++|++++..+ +.+.+.+.++ +...++.||.||+|+|..
T Consensus 220 ~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g--g~~~~i~~D~vi~a~G~~-- 271 (462)
T PRK06416 220 ERALKKRGI--KIKTGAKAKKVEQTD----------------------DGVTVTLEDG--GKEETLEADYVLVAVGRR-- 271 (462)
T ss_pred HHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEEeC--CeeEEEEeCEEEEeeCCc--
Confidence 777888888 899999999998765 3355555443 344679999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 272 -p~~~ 275 (462)
T PRK06416 272 -PNTE 275 (462)
T ss_pred -cCCC
Confidence 5543
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.1e-07 Score=92.29 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||+|.||++||..+++.|.+|+|+|+....
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 479999999999999999999999999999998644
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=86.50 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=83.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+..|..+++.|.+|+|+|+.+.+- +. ...++.+.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p~--~D~ei~~~ 219 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------PG--EDPEISKE 219 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 3679999999999999999999999999999987441 11 12588889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+....++.++ .++.++++..++..+ +...+.+.++.++ ++.+|.|++|+|.
T Consensus 220 ~~~~l~~~gv--~i~~~~~v~~~~~~~----------------------~~v~v~~~~g~~~---~~~ad~vLvAiGR-- 270 (454)
T COG1249 220 LTKQLEKGGV--KILLNTKVTAVEKKD----------------------DGVLVTLEDGEGG---TIEADAVLVAIGR-- 270 (454)
T ss_pred HHHHHHhCCe--EEEccceEEEEEecC----------------------CeEEEEEecCCCC---EEEeeEEEEccCC--
Confidence 9988888677 799999999998876 3356676666322 7899999999994
Q ss_pred CCCCCCCC
Q 014821 163 DVPNIPEF 170 (418)
Q Consensus 163 ~~p~~p~~ 170 (418)
.|+...+
T Consensus 271 -~Pn~~~L 277 (454)
T COG1249 271 -KPNTDGL 277 (454)
T ss_pred -ccCCCCC
Confidence 5777754
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=88.98 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=81.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC-CccccccCCcc--e----ecCCcccc---------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI-GGAWIKTVETT--M----LQTPKQLY--------------- 58 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~-gg~~~~~~~~~--~----l~~~~~~~--------------- 58 (418)
.+||+|||+|.||+.||..+++. |.+|+|+||.+.. ++.......+. . ..++...+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 37999999999999999999986 6899999998753 22211100000 0 01111000
Q ss_pred ---------------ccCCCCCCCCCCC---------------CCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEc
Q 014821 59 ---------------QFSDYPWPDSVTT---------------DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFE 108 (418)
Q Consensus 59 ---------------~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 108 (418)
.-...++...... .......+.+.|...+++.++ .+.+++.|+++...
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~~ 166 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARV--LITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCC--EEEcceEEEEEEEc
Confidence 0001111100000 011345677888888888888 89999999999875
Q ss_pred CCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 109 GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+ + +...-+...+..++....+.++.||+|||...
T Consensus 167 ~--~------------------g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 A--D------------------GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred C--C------------------CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3 0 11112222222234456789999999999873
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7e-07 Score=90.06 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-C-CceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-G-FHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~-~~v~iie~~~~ 37 (418)
.+||||||||..|+++|+.|++. + .+|+|||+.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 58999999999999999999996 4 59999999754
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-07 Score=86.65 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=76.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+.. ..+ ......++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------------------~~~--~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------------------SLM--PPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------------------hhC--CHHHHHHH
Confidence 6899999999999999999999999999999753310 000 13456677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++.+++++.+++... +.+.+.+.++ .++.||.||+|+|..
T Consensus 190 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 190 QHRLTEMGV--HLLLKSQLQGLEKTD----------------------SGIRATLDSG-----RSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHhCCC--EEEECCeEEEEEccC----------------------CEEEEEEcCC-----cEEECCEEEECcCCC
Confidence 777788888 888999999998654 4466766655 589999999999965
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-07 Score=94.55 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||.+|+++|+.|+++|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 59999999999999999999999999999997543
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-06 Score=87.71 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+||+|||||++|+++|..|+++|.+|+|+|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 5799999999999999999999999999999975
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=81.06 Aligned_cols=139 Identities=23% Similarity=0.326 Sum_probs=91.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC--c---------------------------cccc--cCCccee
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G---------------------------AWIK--TVETTML 51 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g--g---------------------------~~~~--~~~~~~l 51 (418)
..+++|||||.-|+++|..|+++|.++.++|+-+-+- | .|+. ...+..+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~ 86 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKL 86 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceee
Confidence 4799999999999999999999999999999865221 1 2222 1111111
Q ss_pred cCCccc----------------------------------cccC-CCCCCCCC------CCCCCChhHHHHHHHHHHHhc
Q 014821 52 QTPKQL----------------------------------YQFS-DYPWPDSV------TTDFPDHNQVLDYIQSYASHF 90 (418)
Q Consensus 52 ~~~~~~----------------------------------~~~~-~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~ 90 (418)
..+... -.|+ ..+++.+| ...+......+..++..+++.
T Consensus 87 ~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~ 166 (399)
T KOG2820|consen 87 HCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAREL 166 (399)
T ss_pred cccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHc
Confidence 111000 0233 34455544 344456777888999999999
Q ss_pred CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 91 DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 91 ~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
|. .++.+.+|+.+...+ + .+....|.+.++ ..+.++.+|+|+|++ ..-.+|
T Consensus 167 G~--i~~dg~~v~~~~~~~----e---------------~~~~v~V~Tt~g-----s~Y~akkiI~t~GaW-i~klL~ 217 (399)
T KOG2820|consen 167 GV--IFRDGEKVKFIKFVD----E---------------EGNHVSVQTTDG-----SIYHAKKIIFTVGAW-INKLLP 217 (399)
T ss_pred Ce--EEecCcceeeEeecc----C---------------CCceeEEEeccC-----CeeecceEEEEecHH-HHhhcC
Confidence 98 788888898888644 0 023345555565 469999999999998 344444
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-07 Score=90.38 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
.+||+|||||++|+++|++|++. |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 47999999999999999999997 89999999964
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.5e-07 Score=86.68 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=31.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+||+|||||.+|+++|+.|++.|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999965
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=89.52 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.2
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
||+|||+|.||++||..+++.|.+|+|+|+....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999976543
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=88.61 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=34.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++.|.+|+|+|+....+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 58999999999999999999999999999999875543
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.9e-07 Score=90.91 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=35.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|..+++.|.+|+|+|+.+..||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999887665
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=90.03 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||||..|+++|+.|+++|++|+|||+++.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 48999999999999999999999999999999753
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-06 Score=84.07 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=77.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ..++...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--d~~~~~~l 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------RE--EPEISAAV 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------cc--CHHHHHHH
Confidence 6899999999999999999999999999999753310 00 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..+..++ ++.++++|..++.++ +...+.+... +...++.+|.||+|+|..
T Consensus 214 ~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~--~~~~~i~~D~ViiA~G~~-- 265 (463)
T TIGR02053 214 EEALAEEGI--EVVTSAQVKAVSVRG----------------------GGKIITVEKP--GGQGEVEADELLVATGRR-- 265 (463)
T ss_pred HHHHHHcCC--EEEcCcEEEEEEEcC----------------------CEEEEEEEeC--CCceEEEeCEEEEeECCC--
Confidence 777778888 899999999998754 3344554432 223679999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 266 -p~~~ 269 (463)
T TIGR02053 266 -PNTD 269 (463)
T ss_pred -cCCC
Confidence 5554
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=86.23 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=32.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||+|.|||++|..+++.|.+|+|+|+.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 89999999999999999999999999999997643
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-06 Score=88.32 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||+|.||++||..+ +.|.+|+|+|+...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 47999999999999999999 88999999999753
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=84.94 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||+||..+. .|.+|+|+||.+..++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 589999999999999999985 6999999999876554
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-06 Score=79.69 Aligned_cols=149 Identities=23% Similarity=0.332 Sum_probs=110.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.||.++.-..+.|.+|+++|-.+.+|+.. ..++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m---------------------------------D~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM---------------------------------DGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc---------------------------------CHHHHHH
Confidence 3689999999999999999999999999999988776431 1478888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++......++ .+.++++|..++.+. ++...|.+.+.++++.++++||.+.+|+|.
T Consensus 258 ~qr~L~kQgi--kF~l~tkv~~a~~~~---------------------dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-- 312 (506)
T KOG1335|consen 258 FQRVLQKQGI--KFKLGTKVTSATRNG---------------------DGPVEIEVENAKTGKKETLECDVLLVSIGR-- 312 (506)
T ss_pred HHHHHHhcCc--eeEeccEEEEeeccC---------------------CCceEEEEEecCCCceeEEEeeEEEEEccC--
Confidence 8888888888 899999999999987 346788899988899999999999999995
Q ss_pred CCCCCCCCCCCCCCCC------CCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 163 DVPNIPEFPPKKGPEA------FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
+|..-.+ |++. ..+++....++.. +-.+|-.||--.-|--+|...-+
T Consensus 313 -rP~t~GL----gle~iGi~~D~r~rv~v~~~f~t----------~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 313 -RPFTEGL----GLEKIGIELDKRGRVIVNTRFQT----------KVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred -cccccCC----Chhhcccccccccceeccccccc----------cCCceEEecccCCcchhhhhhhh
Confidence 4666543 3332 3344444333332 22357777755555444444433
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-06 Score=83.06 Aligned_cols=104 Identities=25% Similarity=0.273 Sum_probs=78.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. +.+ ..++...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~l 219 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PNE--DAEVSKEI 219 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Ccc--CHHHHHHH
Confidence 689999999999999999999999999999865331 111 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++.++++|.+++... ....+.+.. .++...++.+|.||+|+|.
T Consensus 220 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~-~~g~~~~i~~D~vi~a~G~--- 271 (466)
T PRK07818 220 AKQYKKLGV--KILTGTKVESIDDNG----------------------SKVTVTVSK-KDGKAQELEADKVLQAIGF--- 271 (466)
T ss_pred HHHHHHCCC--EEEECCEEEEEEEeC----------------------CeEEEEEEe-cCCCeEEEEeCEEEECcCc---
Confidence 777788899 899999999998654 334454442 1234457999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 272 ~pn~~ 276 (466)
T PRK07818 272 APRVE 276 (466)
T ss_pred ccCCC
Confidence 46554
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-06 Score=83.39 Aligned_cols=103 Identities=18% Similarity=0.311 Sum_probs=77.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~l 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------------------R--EDEDVAAAV 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------------------c--cCHHHHHHH
Confidence 6899999999999999999999999999999763310 0 113566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
...+++.++ ++.++++|.+++..+ +...+.+... +...++.+|.||+|+|.
T Consensus 219 ~~~l~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~--~~~~~i~~D~Vi~A~G~--- 269 (463)
T PRK06370 219 REILEREGI--DVRLNAECIRVERDG----------------------DGIAVGLDCN--GGAPEITGSHILVAVGR--- 269 (463)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEEeC--CCceEEEeCEEEECcCC---
Confidence 777888898 899999999998754 2334444321 12357999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 270 ~pn~~ 274 (463)
T PRK06370 270 VPNTD 274 (463)
T ss_pred CcCCC
Confidence 46554
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-06 Score=87.44 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=34.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||+.||..+++.|.+|+|+||....++
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 47999999999999999999999999999999775444
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-06 Score=83.63 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=75.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~l 217 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHIL 217 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHHH
Confidence 689999999999999999999999999999975331 00 114567777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++++++++.+++... ....+ ... +...++.||.||+|+|.
T Consensus 218 ~~~L~~~GI--~i~~~~~V~~i~~~~----------------------~~v~~--~~~--g~~~~i~~D~vivA~G~--- 266 (458)
T PRK06912 218 REKLENDGV--KIFTGAALKGLNSYK----------------------KQALF--EYE--GSIQEVNAEFVLVSVGR--- 266 (458)
T ss_pred HHHHHHCCC--EEEECCEEEEEEEcC----------------------CEEEE--EEC--CceEEEEeCEEEEecCC---
Confidence 777888898 899999999997654 22323 222 33357999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 267 ~p~~~ 271 (458)
T PRK06912 267 KPRVQ 271 (458)
T ss_pred ccCCC
Confidence 46654
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-06 Score=85.57 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=78.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. ..+ ..++...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~~--d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PGT--DTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CCC--CHHHHHH
Confidence 3689999999999999999999999999999975331 111 1356667
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++++++.|.+++..+ +...+.+....++....+.+|.|++|+|..
T Consensus 221 l~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~- 275 (466)
T PRK06115 221 LQKALTKQGM--KFKLGSKVTGATAGA----------------------DGVSLTLEPAAGGAAETLQADYVLVAIGRR- 275 (466)
T ss_pred HHHHHHhcCC--EEEECcEEEEEEEcC----------------------CeEEEEEEEcCCCceeEEEeCEEEEccCCc-
Confidence 7777778898 899999999998654 334455443222344679999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 276 --pn~~ 279 (466)
T PRK06115 276 --PYTQ 279 (466)
T ss_pred --cccc
Confidence 5543
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=88.15 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--ccccCC----cce---ecCCcccc---------ccCCCC-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--WIKTVE----TTM---LQTPKQLY---------QFSDYP- 64 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--~~~~~~----~~~---l~~~~~~~---------~~~~~~- 64 (418)
+||+|||||++|+.+|..+++.|.+++++|++....|. +..... +.. +......+ +|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999987433221 111110 000 00000000 011000
Q ss_pred --CCCCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 65 --WPDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 65 --~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
-+.-+ .....++..+...+++.+++++. ...+...|+++.... .+....|.+.++
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pg--V~Ile~~Vv~li~e~--------------------~g~V~GV~t~~G 138 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPN--LSLFQGEVEDLILED--------------------NDEIKGVVTQDG 138 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCC--cEEEEeEEEEEEEec--------------------CCcEEEEEECCC
Confidence 00000 11233566777888888887732 234556788876542 013345666555
Q ss_pred CCCceeEEEeCEEEEeeccC
Q 014821 142 KNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~ 161 (418)
..+.|+.||+|||++
T Consensus 139 -----~~I~Ad~VILATGtf 153 (617)
T TIGR00136 139 -----LKFRAKAVIITTGTF 153 (617)
T ss_pred -----CEEECCEEEEccCcc
Confidence 479999999999977
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-06 Score=86.41 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++.|. |+|+|+.+..+|
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g 38 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG 38 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC
Confidence 4799999999999999999999997 999999865443
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.7e-06 Score=82.83 Aligned_cols=104 Identities=29% Similarity=0.341 Sum_probs=78.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. ..+ ..++...+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~~ 230 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AAA--DEQVAKEA 230 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999975321 000 14566677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ .+..+++|.+++... +...+...++ ++...++.||.|++|+|.
T Consensus 231 ~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~~-~g~~~~i~~D~vl~a~G~--- 282 (475)
T PRK06327 231 AKAFTKQGL--DIHLGVKIGEIKTGG----------------------KGVSVAYTDA-DGEAQTLEVDKLIVSIGR--- 282 (475)
T ss_pred HHHHHHcCc--EEEeCcEEEEEEEcC----------------------CEEEEEEEeC-CCceeEEEcCEEEEccCC---
Confidence 777777788 899999999998765 3344544432 244467999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 283 ~p~~~ 287 (475)
T PRK06327 283 VPNTD 287 (475)
T ss_pred ccCCC
Confidence 46655
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-06 Score=84.15 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=93.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC-------------CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK-------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~-------------~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
..|+|||||++|+.+|..|+.. .++|+++|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3699999999999999999763 13899999987441
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
+.++ ..+..|.+...++.|+ ++..++.|++++++. |++.+++ .+|.
T Consensus 205 p~~~--~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~~~--------------------------v~~~~g~----~~I~ 250 (405)
T COG1252 205 PMFP--PKLSKYAERALEKLGV--EVLLGTPVTEVTPDG--------------------------VTLKDGE----EEIP 250 (405)
T ss_pred cCCC--HHHHHHHHHHHHHCCC--EEEcCCceEEECCCc--------------------------EEEccCC----eeEe
Confidence 2222 5778899999999999 899999999999877 7777763 2699
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCCCC-CCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKGPE-AFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQ 212 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G 212 (418)
|+.+|.|+|.. ..|..-.+. +.+ +-.+.++-...+.. .....|-++|-.
T Consensus 251 ~~tvvWaaGv~-a~~~~~~l~---~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~ 300 (405)
T COG1252 251 ADTVVWAAGVR-ASPLLKDLS---GLETDRRGRLVVNPTLQV---------PGHPDIFAAGDC 300 (405)
T ss_pred cCEEEEcCCCc-CChhhhhcC---hhhhccCCCEEeCCCccc---------CCCCCeEEEecc
Confidence 99999999987 344443322 333 22355555444433 234557777743
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=87.82 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC---CceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG---FHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~---~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||+||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 479999999999999999999998 89999999875443
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-06 Score=86.43 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=33.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 3799999999999999999999999999999976433
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-06 Score=86.23 Aligned_cols=36 Identities=33% Similarity=0.343 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||+|.|||.||..+++.|.+|+|||+....
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~ 47 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT 47 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 479999999999999999999999999999997543
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=85.70 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
...+...+.+.+.+.|. .++++++|++++..+ ++.|.+.+.+..++...++.+|+||
T Consensus 177 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~i~~~~---------------------~~~v~v~~~~~~~g~~~~i~A~~VV 233 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGT--TIRFGHEVRNLKRQS---------------------DGSWTVTVKNTRTGGKRTLNTRFVF 233 (483)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcC---------------------CCeEEEEEeeccCCceEEEECCEEE
Confidence 44556667677777788 899999999998754 2457776654333444579999999
Q ss_pred EeeccCC
Q 014821 156 LCVGRFS 162 (418)
Q Consensus 156 lAtG~~~ 162 (418)
+|+|.++
T Consensus 234 ~AAG~~s 240 (483)
T TIGR01320 234 VGAGGGA 240 (483)
T ss_pred ECCCcch
Confidence 9999874
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-06 Score=84.80 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=75.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999999975331 00 11356667
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++.++++|++++..+ +...+.. ++ .++.||.||+|+|..
T Consensus 204 ~~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~v~v~~-~g-----~~i~~D~viva~G~~- 252 (438)
T PRK07251 204 AKQYMEEDGI--TFLLNAHTTEVKNDG----------------------DQVLVVT-ED-----ETYRFDALLYATGRK- 252 (438)
T ss_pred HHHHHHHcCC--EEEcCCEEEEEEecC----------------------CEEEEEE-CC-----eEEEcCEEEEeeCCC-
Confidence 7777888898 899999999998644 2233332 22 479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 253 --p~~~ 256 (438)
T PRK07251 253 --PNTE 256 (438)
T ss_pred --CCcc
Confidence 6544
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-06 Score=87.27 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||++|..+++.| +|+|+|+....+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 8999999876554
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=85.10 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... . ....+..++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~--~~~~~~~~l 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------N--APPPVQRYL 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------h--cCHHHHHHH
Confidence 68999999999999999999999999999997633210 0 113566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++++++++++++. + +...+.+.++ .++.||.||+|+|..
T Consensus 193 ~~~l~~~GV--~i~~~~~V~~i~~-~----------------------~~~~v~l~~g-----~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 193 LQRHQQAGV--RILLNNAIEHVVD-G----------------------EKVELTLQSG-----ETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHCCC--EEEeCCeeEEEEc-C----------------------CEEEEEECCC-----CEEECCEEEECCCCC
Confidence 777778898 8999999999875 2 2244555555 479999999999965
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-06 Score=87.56 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~ 37 (418)
.+||+|||+|.|||.||..+++. |.+|+|+|+...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999998 999999999764
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-06 Score=85.45 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=77.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------------------------------F--LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999763310 0 11456677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ .+..++++++++..+ +.+.+.+.++ .++.||.||+|+|..
T Consensus 222 l~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vi~a~G~~- 271 (461)
T PRK05249 222 LSYHLRDSGV--TIRHNEEVEKVEGGD----------------------DGVIVHLKSG-----KKIKADCLLYANGRT- 271 (461)
T ss_pred HHHHHHHcCC--EEEECCEEEEEEEeC----------------------CeEEEEECCC-----CEEEeCEEEEeecCC-
Confidence 7777778888 899999999998655 3355655444 479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 272 --p~~~ 275 (461)
T PRK05249 272 --GNTD 275 (461)
T ss_pred --cccc
Confidence 5543
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-06 Score=83.58 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=32.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~ 38 (418)
.+||||||||.+|+++|..|++. +.+|+|+|+.+.+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 47999999999999999999997 7899999994443
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-06 Score=85.36 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||+||..+++.|.+|+|+||....++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 47999999999999999999999999999999865443
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.2e-07 Score=68.81 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
+|+|||+|.+|+|+|..|...+.. |+++.|++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh
Confidence 689999999999999999998765 99999999744
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.1e-06 Score=86.02 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=34.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||+.||..+++.|.+|+|+||....++
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 37999999999999999999999999999999765443
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-06 Score=84.20 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=78.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~~--~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RGF--DPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------ccc--CHHHHHH
Confidence 3689999999999999999999999999999965321 001 1356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ ++.++++|.+++..+ ++.+.+.+.++ .++.||.||+|+|.
T Consensus 214 l~~~L~~~GV--~i~~~~~V~~i~~~~---------------------~g~~~v~~~~g-----~~i~~D~Vv~a~G~-- 263 (450)
T PRK06116 214 LVEEMEKKGI--RLHTNAVPKAVEKNA---------------------DGSLTLTLEDG-----ETLTVDCLIWAIGR-- 263 (450)
T ss_pred HHHHHHHCCc--EEECCCEEEEEEEcC---------------------CceEEEEEcCC-----cEEEeCEEEEeeCC--
Confidence 7777888898 899999999998765 22255655544 47999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 264 -~p~~~ 268 (450)
T PRK06116 264 -EPNTD 268 (450)
T ss_pred -CcCCC
Confidence 46554
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-06 Score=86.11 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=34.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
|..+||+|||+|.||+.+|..+++ +.+|+|+|+.+..++
T Consensus 1 ~~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 1 MPSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred CCccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 567899999999999999999976 899999999875444
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.2e-07 Score=90.54 Aligned_cols=44 Identities=39% Similarity=0.567 Sum_probs=41.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|+++||+|||||++||++|..|.++|++++|+|+++.+||.+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 67899999999999999999999999999999999999997665
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-07 Score=92.14 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQT 53 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~ 53 (418)
|+.+||||||||+.||++|..|+++|++|+|+|++..+||.... .+.+.+..+
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~ 54 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDT 54 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEecc
Confidence 78899999999999999999999999999999999999996655 444555544
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-06 Score=86.21 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||+|.|||.||..+++.|.+|+|+|+.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 489999999999999999999999999999997654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.3e-06 Score=82.02 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=31.6
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
||+|||||.+|+++|..|+++|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 8999999999999999999999999999997543
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.7e-06 Score=83.13 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=76.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++...+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~l 213 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RGF--DDDMRALL 213 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------ccc--CHHHHHHH
Confidence 579999999999999999999999999999965321 001 14566677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ ++..+++|.+++..+ +...+.+.++ .++.+|.||+|+|..
T Consensus 214 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~viva~G~~-- 262 (446)
T TIGR01424 214 ARNMEGRGI--RIHPQTSLTSITKTD----------------------DGLKVTLSHG-----EEIVADVVLFATGRS-- 262 (446)
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCC-----cEeecCEEEEeeCCC--
Confidence 777888898 899999999998654 2345555444 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 263 -pn~~ 266 (446)
T TIGR01424 263 -PNTK 266 (446)
T ss_pred -cCCC
Confidence 5543
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.4e-06 Score=84.68 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.1
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
|+|||+|.|||+||..+++.|.+|+|+|+.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999987443
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=83.66 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=35.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|..++++|.+|+|+|+.+..||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 57999999999999999999999999999999887765
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.4e-06 Score=81.95 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=77.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RSF--DSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------ccc--CHHHHHH
Confidence 3689999999999999999999999999999976331 111 1356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++..++.+.+++... ++...+.+.++ ...+.||.||+|+|..
T Consensus 213 ~~~~l~~~gI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g----~~~i~~D~vi~a~G~~- 264 (450)
T TIGR01421 213 ITEEYEKEGI--NVHKLSKPVKVEKTV---------------------EGKLVIHFEDG----KSIDDVDELIWAIGRK- 264 (450)
T ss_pred HHHHHHHcCC--EEEcCCEEEEEEEeC---------------------CceEEEEECCC----cEEEEcCEEEEeeCCC-
Confidence 7777778888 899999999998654 12234544433 1479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 265 --pn~~ 268 (450)
T TIGR01421 265 --PNTK 268 (450)
T ss_pred --cCcc
Confidence 6554
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.7e-07 Score=90.44 Aligned_cols=44 Identities=39% Similarity=0.642 Sum_probs=40.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|++++|+|||||.|||+||+.|...|++|+|+|.++++||.-+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 45789999999999999999999999999999999999996555
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=83.61 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++. +.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999986 579999999875544
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.9e-06 Score=83.13 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI 38 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~ 38 (418)
..+||+|||||..|+++|+.|++. +.+|+|+|+...+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 468999999999999999999984 7799999997644
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.5e-06 Score=84.05 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++. +.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999986 479999999865443
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-06 Score=85.36 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+|+|||||++||++|..|+++|++++|||+..
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4799999999999999999999999999999975
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=82.58 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=35.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+||++|..+++.|.+|+|+|+.+..||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 57999999999999999999999999999999887666
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-06 Score=78.95 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=65.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC------CCceEEEeeCCCCCccccc-----------cCCcc-----eecCC--cccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK-----------TVETT-----MLQTP--KQLY 58 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~------~~~v~iie~~~~~gg~~~~-----------~~~~~-----~l~~~--~~~~ 58 (418)
.+||||||||||||++|++|.+. .++|+++|+.+.+||.-.. ..|.. -+++| ++.+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 47999999999999999999873 4589999999999873222 11211 12222 2222
Q ss_pred ccC----CC----CCCCCCCCCC-CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcC
Q 014821 59 QFS----DY----PWPDSVTTDF-PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 59 ~~~----~~----~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
.|. .+ +++..-...| .+-.++.+||-+.++++|+ ++.-..-+.++-+++
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly~e 213 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLYDE 213 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeEcC
Confidence 222 11 1222112333 3556888999999999998 666555555555544
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=78.97 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=30.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~-~v~iie~~~ 36 (418)
.+||+|||||..|+++|++|+++ |. +|+|||+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 57999999999999999999995 85 899999964
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.3e-06 Score=82.03 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=77.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++..++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PGE--DADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CCC--CHHHHHHH
Confidence 579999999999999999999999999999865331 111 13566778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++..++++.+++..+ +...+.+.++ .++.+|.|++|+|..
T Consensus 225 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g-----~~l~~D~vl~a~G~~-- 273 (466)
T PRK07845 225 EEVFARRGM--TVLKRSRAESVERTG----------------------DGVVVTLTDG-----RTVEGSHALMAVGSV-- 273 (466)
T ss_pred HHHHHHCCc--EEEcCCEEEEEEEeC----------------------CEEEEEECCC-----cEEEecEEEEeecCC--
Confidence 888888898 899999999998654 3345555444 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 274 -pn~~ 277 (466)
T PRK07845 274 -PNTA 277 (466)
T ss_pred -cCCC
Confidence 5554
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.9e-06 Score=82.42 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=76.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+- .. ...++...+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 250 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAVV 250 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999965221 01 114667777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++..+++|.+++..+ +...+...++ .++.+|.|++|+|..
T Consensus 251 ~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vl~a~G~~-- 299 (499)
T PLN02507 251 ARNLEGRGI--NLHPRTNLTQLTKTE----------------------GGIKVITDHG-----EEFVADVVLFATGRA-- 299 (499)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEeC----------------------CeEEEEECCC-----cEEEcCEEEEeecCC--
Confidence 777888898 899999999998654 3344554433 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 300 -pn~~ 303 (499)
T PLN02507 300 -PNTK 303 (499)
T ss_pred -CCCC
Confidence 5554
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.4e-06 Score=79.63 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=49.0
Q ss_pred HHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 81 DYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 81 ~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+.+-.++.+. +. .+.++++|++|++.. ++.|.|.+.+..++...++.+++|++..|
T Consensus 185 r~l~~~l~~~~~~--~~~~~~eV~~i~r~~---------------------dg~W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 185 RQLVEYLQKQKGF--ELHLNHEVTDIKRNG---------------------DGRWEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred HHHHHHHHhCCCc--EEEecCEeCeeEECC---------------------CCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence 3333344443 77 899999999999987 57799999988888889999999999999
Q ss_pred cCCCCC
Q 014821 160 RFSDVP 165 (418)
Q Consensus 160 ~~~~~p 165 (418)
.. +.|
T Consensus 242 G~-aL~ 246 (488)
T PF06039_consen 242 GG-ALP 246 (488)
T ss_pred hH-hHH
Confidence 88 344
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=9e-06 Score=81.73 Aligned_cols=100 Identities=19% Similarity=0.330 Sum_probs=72.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999975331 00 01345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.. +.++ .+++++++.+++..+ +...+.+.++ .++.||.|++|+|..
T Consensus 213 l~~l~-~~~v--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vl~a~G~~- 261 (451)
T PRK07846 213 FTELA-SKRW--DVRLGRNVVGVSQDG----------------------SGVTLRLDDG-----STVEADVLLVATGRV- 261 (451)
T ss_pred HHHHH-hcCe--EEEeCCEEEEEEEcC----------------------CEEEEEECCC-----cEeecCEEEEEECCc-
Confidence 55544 3466 788899999998654 3344555444 479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 262 --pn~~ 265 (451)
T PRK07846 262 --PNGD 265 (451)
T ss_pred --cCcc
Confidence 5554
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.8e-06 Score=75.11 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=51.2
Q ss_pred cCcchhhhhccCcEEEeccC--ceeEecCc-EEEc---C-Cc-eeeeccEEEEccCCCCCcchhccccchhhhhhhcCCC
Q 014821 326 VPEKFYDKVEEGSIILKKSQ--DFSFCEDG-IVVD---G-QT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (418)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~--v~~~~~~~-v~~~---~-g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~ 397 (418)
+.+.+.+.+++.+|++.... |+..+.+. .+|+ + |. ++++++.+-..--.++. +++...-+-+.
T Consensus 238 Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p---------e~l~~s~~adk 308 (446)
T KOG3851|consen 238 YADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP---------EVLANSDLADK 308 (446)
T ss_pred HHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh---------hhhhcCcccCc
Confidence 34555666677777776554 33333332 2332 2 43 33788888766555554 45555556588
Q ss_pred CCCccceeee--eeccCcccc
Q 014821 398 TEKLPLYRSA--HIYIDTLTY 416 (418)
Q Consensus 398 ~~~~~~~~~~--~~~~~~~~~ 416 (418)
.|.+.++..+ +..+||||-
T Consensus 309 tGfvdVD~~TlQs~kypNVFg 329 (446)
T KOG3851|consen 309 TGFVDVDQSTLQSKKYPNVFG 329 (446)
T ss_pred ccceecChhhhccccCCCcee
Confidence 8889998777 888999984
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=82.05 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||+|.||+++|..+++. .+|+|+||....+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~ 40 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR 40 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 47999999999999999999976 8999999976433
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.1e-06 Score=82.53 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=37.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCcccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~ 43 (418)
++++++|||||.|||++|.+|++. |.+|+|+|+.+.+||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 357999999999999999999985 679999999999998543
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=80.73 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=74.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|.+.|.+|+|+++.+.+. ..+ ..++...+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PAA--DKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999976331 111 13556666
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++. + .+..++.|..++..+ +...+.+.++ ++...++.+|.||+|+|.
T Consensus 222 ~~~l~~~-v--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~-~~~~~~i~~D~vi~a~G~--- 272 (471)
T PRK06467 222 TKRIKKQ-F--NIMLETKVTAVEAKE----------------------DGIYVTMEGK-KAPAEPQRYDAVLVAVGR--- 272 (471)
T ss_pred HHHHhhc-e--EEEcCCEEEEEEEcC----------------------CEEEEEEEeC-CCcceEEEeCEEEEeecc---
Confidence 6666655 6 788899999998654 3344544332 122357999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 273 ~pn~~ 277 (471)
T PRK06467 273 VPNGK 277 (471)
T ss_pred cccCC
Confidence 46654
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-05 Score=81.55 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=35.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|.+|+++|..++++|.+|+|||+++..||.
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 589999999999999999999999999999998776663
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-06 Score=75.85 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=85.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCC-----------ccee-cCCcc-------------
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE-----------TTML-QTPKQ------------- 56 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~-----------~~~l-~~~~~------------- 56 (418)
+.-.+||||+|.|||+++..+...+-.|+++|+...+||--..... ..++ .+|..
T Consensus 8 ~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~ 87 (477)
T KOG2404|consen 8 ELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKG 87 (477)
T ss_pred cCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCC
Confidence 3446999999999999999999987779999999999883332110 0000 00100
Q ss_pred ---cc-----------c-----c----------CC--CCCCCCCCCCCCChhHHHHHHHHHHHhc----CcccceEeeeE
Q 014821 57 ---LY-----------Q-----F----------SD--YPWPDSVTTDFPDHNQVLDYIQSYASHF----DLRKHIKFNRK 101 (418)
Q Consensus 57 ---~~-----------~-----~----------~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~v~~~~~ 101 (418)
+| . | .. .|.........|+..+++..|....+++ .-.-++..+++
T Consensus 88 ~~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nsk 167 (477)
T KOG2404|consen 88 VPELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSK 167 (477)
T ss_pred cHHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcce
Confidence 00 0 0 00 1111111344556666666555444433 22125788999
Q ss_pred EEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 102 VVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 102 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
|++|.++. ++..-|.+.+ .+|+...+.++.||+|||.+.
T Consensus 168 vv~il~n~---------------------gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 168 VVDILRNN---------------------GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eeeeecCC---------------------CeEEEEEEEc-CCCCccceecCceEEecCCcC
Confidence 99999766 3444455553 346667899999999999884
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=80.76 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+| +|+++|..+++.|.+|+|||+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5799999999 999999999999999999999876554
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=80.16 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=75.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. ..+ ..++...
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHH
Confidence 3689999999999999999999999999999965221 111 1456677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ ++.+++++.+++..+ +.+.+...++ ++.+|.|++|+|..
T Consensus 205 l~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~~v~v~~~~g------~i~~D~vl~a~G~~- 253 (441)
T PRK08010 205 IATILRDQGV--DIILNAHVERISHHE----------------------NQVQVHSEHA------QLAVDALLIASGRQ- 253 (441)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEcCC------eEEeCEEEEeecCC-
Confidence 7888888898 899999999998654 3344443222 58899999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 254 --pn~~ 257 (441)
T PRK08010 254 --PATA 257 (441)
T ss_pred --cCCC
Confidence 5543
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=81.35 Aligned_cols=98 Identities=8% Similarity=0.151 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|.+.|.+|+++++.. +- . ....++...+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l-------------------------------~--~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LL-------------------------------F--REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CC-------------------------------C--cchHHHHHHH
Confidence 689999999999999999999999999998732 10 0 0113566778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ ++.++++|..++..+ +.+.+...++ ++.+|.||+|+|..
T Consensus 235 ~~~L~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g------~i~aD~VlvA~G~~-- 282 (479)
T PRK14727 235 TACFEKEGI--EVLNNTQASLVEHDD----------------------NGFVLTTGHG------ELRAEKLLISTGRH-- 282 (479)
T ss_pred HHHHHhCCC--EEEcCcEEEEEEEeC----------------------CEEEEEEcCC------eEEeCEEEEccCCC--
Confidence 888888898 899999999998655 3344543332 58999999999955
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 283 -pn~~ 286 (479)
T PRK14727 283 -ANTH 286 (479)
T ss_pred -CCcc
Confidence 5544
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=77.50 Aligned_cols=41 Identities=37% Similarity=0.606 Sum_probs=38.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
|+..||+|||+|.+||.+|..|.+.|++|+|+|.++++||.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 45789999999999999999999999999999999999884
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=81.13 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=72.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|.+.|.+|+++++.+.+.. ..+ ..++.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------~~~--~~~~~~~l 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------DSF--DKEITDVM 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc------------------------------hhc--CHHHHHHH
Confidence 6899999999999999999999999999998652210 001 24677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.++ ++.+++++.+++... ....+...+ .++.||.||+|+|..
T Consensus 198 ~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 198 EEELRENGV--ELHLNEFVKSLIGED----------------------KVEGVVTDK------GEYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHCCC--EEEcCCEEEEEecCC----------------------cEEEEEeCC------CEEEcCEEEECcCCC
Confidence 888888898 899999999996433 223333322 269999999999954
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=80.75 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=72.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+.. ..+ ..++..++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~~--~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KLF--DEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------ccc--CHHHHHHH
Confidence 6899999999999999999999999999998753210 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.|+ ++.+++++.+++.+. . . +.+.++ .++.||.||+|+|..
T Consensus 186 ~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~-~-v~~~~g-----~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 186 EEELKKHEI--NLRLNEEVDSIEGEE----------------------R-V-KVFTSG-----GVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHcCC--EEEeCCEEEEEecCC----------------------C-E-EEEcCC-----CEEEeCEEEECCCcc
Confidence 888888898 899999999997644 1 2 334444 479999999999954
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.1e-06 Score=82.21 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=71.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...++...+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------------------~--~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-------------------------------L--MDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-------------------------------h--cCHHHHHHH
Confidence 5899999999999999999999999999999753311 0 013566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++.++++|.+++.. .+.+.++ .++.||.|++|+|..
T Consensus 196 ~~~l~~~gI--~i~~~~~v~~i~~~--------------------------~v~~~~g-----~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 196 LDELDKREI--PYRLNEEIDAINGN--------------------------EVTFKSG-----KVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHhcCC--EEEECCeEEEEeCC--------------------------EEEECCC-----CEEEeCEEEECcCCC
Confidence 777888898 89999999998632 2555444 478999999999954
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=82.81 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35799999999999999999999999999999965
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=78.98 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=33.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|.++||+|||||.+|+++|+.|++.|.+|+++|+..-
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 3578999999999999999999999999999998663
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-05 Score=80.19 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=36.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|.+|+++|..|++.|.+++|||+...+||.
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 579999999999999999999999999999998877764
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-05 Score=80.21 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=35.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.+||||||+| +|+++|..+++.|.+|+|+|+.+.+||..
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 5899999999 89999999999999999999998888743
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-05 Score=80.02 Aligned_cols=95 Identities=12% Similarity=0.235 Sum_probs=71.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|++.|.+|+++++.. +- .. ...++...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l-------------------------------~~--~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL-------------------------------SQ--EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999998732 10 00 11356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++..++.++ ++.+++++.+++.++ +.+.+...+ .++.+|.||+|+|..
T Consensus 224 l~~~l~~~GI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 224 IEAAFRREGI--EVLKQTQASEVDYNG----------------------REFILETNA------GTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEECC------CEEEeCEEEEccCCC
Confidence 7888888898 899999999998654 334443322 259999999999955
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-05 Score=79.64 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=35.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|.+|+++|..+++.|.+|+|||+....||.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 589999999999999999999999999999998766653
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=80.30 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||+++|..+++. .+|+|+||....+|
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 47999999999999999999886 89999999875554
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-06 Score=83.34 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||++||..++ .|.+|+|+||.+..|+
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 579999999999999999996 4899999999876554
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-05 Score=81.16 Aligned_cols=38 Identities=26% Similarity=0.568 Sum_probs=35.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|..++++|.+++|||+....||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 57999999999999999999999999999999877665
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-05 Score=79.78 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=36.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.+||+|||+|.+|+++|..++++|.+|+|||+....||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 4799999999999999999999999999999988777754
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=79.20 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=72.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ..++...+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~~--d~~~~~~l 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------HL--DEDISDRF 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------cc--CHHHHHHH
Confidence 6899999999999999999999999999999653210 00 13445555
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..+ .++ .++++++|.+++..+ +...+.+.++ .++.+|.|++|+|..
T Consensus 217 ~~~~~-~gI--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vl~a~G~~-- 264 (452)
T TIGR03452 217 TEIAK-KKW--DIRLGRNVTAVEQDG----------------------DGVTLTLDDG-----STVTADVLLVATGRV-- 264 (452)
T ss_pred HHHHh-cCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCC-----CEEEcCEEEEeeccC--
Confidence 55443 466 788899999998654 3345555443 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 265 -pn~~ 268 (452)
T TIGR03452 265 -PNGD 268 (452)
T ss_pred -cCCC
Confidence 5553
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.3e-06 Score=81.45 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++||+|||+|.+|+++|..|+++|.++++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999863
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=76.91 Aligned_cols=37 Identities=35% Similarity=0.570 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
+.+|+|||||.+|++.|..|.+.|++++|+|++..+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 5789999999999999999999999999999977553
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=81.43 Aligned_cols=99 Identities=11% Similarity=0.215 Sum_probs=74.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|++.|.+|+++++.. +- .. ...++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999842 10 00 11356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++.+++++.+++..+ +.+.+...++ ++.+|.||+|+|.
T Consensus 316 l~~~l~~~gI--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~------~i~~D~vi~a~G~-- 363 (561)
T PRK13748 316 VTAAFRAEGI--EVLEHTQASQVAHVD----------------------GEFVLTTGHG------ELRADKLLVATGR-- 363 (561)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CEEEEEecCC------eEEeCEEEEccCC--
Confidence 8888888898 899999999998654 3344443322 5999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 364 -~pn~~ 368 (561)
T PRK13748 364 -APNTR 368 (561)
T ss_pred -CcCCC
Confidence 46654
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=79.60 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=76.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|...|.+|+|+++.+.+. ..+ ..++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHH
Confidence 3689999999999999999999999999999975321 111 1356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++..++.+.+++... .+...+...++ ..++.+|.|++|+|.
T Consensus 284 l~~~L~~~GV--~i~~~~~V~~I~~~~---------------------~~~v~v~~~~~----~~~i~aD~VlvA~Gr-- 334 (561)
T PTZ00058 284 LENDMKKNNI--NIITHANVEEIEKVK---------------------EKNLTIYLSDG----RKYEHFDYVIYCVGR-- 334 (561)
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEecC---------------------CCcEEEEECCC----CEEEECCEEEECcCC--
Confidence 7777788898 899999999998654 12233333222 157999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 335 -~Pn~~ 339 (561)
T PTZ00058 335 -SPNTE 339 (561)
T ss_pred -CCCcc
Confidence 46544
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=78.35 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=75.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.+++|||||+.|+.+|..|++.|.+|+++++. .+. ..+ ..++.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------~~~--d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------------------RGF--DQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------------------ccc--CHHHHHHH
Confidence 57999999999999999999999999999873 210 111 14667778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ .+.+++.+..++..+ +...|...++. ...++.+|.|++|+|..
T Consensus 227 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~~~--~~~~i~~D~vl~a~G~~-- 278 (484)
T TIGR01438 227 GEHMEEHGV--KFKRQFVPIKVEQIE----------------------AKVKVTFTDST--NGIEEEYDTVLLAIGRD-- 278 (484)
T ss_pred HHHHHHcCC--EEEeCceEEEEEEcC----------------------CeEEEEEecCC--cceEEEeCEEEEEecCC--
Confidence 888888898 899999888887654 23345444331 12479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 279 -pn~~ 282 (484)
T TIGR01438 279 -ACTR 282 (484)
T ss_pred -cCCC
Confidence 6554
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-05 Score=78.88 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=75.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.++++|||||+.|+.+|..+.. .|.+|+|+++.+.+. ..+ ..++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RGF--DSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------ccc--CHHH
Confidence 3689999999999999976654 388999999976331 111 1466
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+.+.+.+++.++ ++.+++.+.+++..+ ++...+.+.++ .++.+|.|++|+|
T Consensus 234 ~~~l~~~L~~~GI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~i~~D~vl~a~G 285 (486)
T TIGR01423 234 RKELTKQLRANGI--NIMTNENPAKVTLNA---------------------DGSKHVTFESG-----KTLDVDVVMMAIG 285 (486)
T ss_pred HHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------------CceEEEEEcCC-----CEEEcCEEEEeeC
Confidence 7778888888898 899999999998654 12234555443 4799999999999
Q ss_pred cCCCCCCCC
Q 014821 160 RFSDVPNIP 168 (418)
Q Consensus 160 ~~~~~p~~p 168 (418)
.. |+..
T Consensus 286 ~~---Pn~~ 291 (486)
T TIGR01423 286 RV---PRTQ 291 (486)
T ss_pred CC---cCcc
Confidence 54 5543
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.4e-06 Score=81.78 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
.+..+.++|.+.+.+.|+ ++.. ..|+++...+ ++....|.+.++ .++.+|++
T Consensus 152 DR~~fd~~L~~~A~~~Gv--~~~~-g~V~~v~~~~--------------------~g~i~~v~~~~g-----~~i~ad~~ 203 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGV--EVIE-GTVVDVELDE--------------------DGRITAVRLDDG-----RTIEADFF 203 (454)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEE-T-EEEEEE-T--------------------TSEEEEEEETTS-----EEEEESEE
T ss_pred eHHHHHHHHHHHHhcCCC--EEEe-CEEEEEEEcC--------------------CCCEEEEEECCC-----CEEEEeEE
Confidence 588999999999999998 6655 5688888766 012234555555 68999999
Q ss_pred EEeeccCC
Q 014821 155 ILCVGRFS 162 (418)
Q Consensus 155 IlAtG~~~ 162 (418)
|-|+|..+
T Consensus 204 IDASG~~s 211 (454)
T PF04820_consen 204 IDASGRRS 211 (454)
T ss_dssp EE-SGGG-
T ss_pred EECCCccc
Confidence 99999864
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.1e-06 Score=81.80 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcce----------ecCCcccc---------ccC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTM----------LQTPKQLY---------QFS 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~----------l~~~~~~~---------~~~ 61 (418)
|+.+||+|||||.||+.||.+.++.|.++.++--+.+.=| +..+.|..- +......| +|-
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig-~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG-EMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee-ecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence 3469999999999999999999999999888776543211 122222110 01111111 110
Q ss_pred CCCCCCC---C-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 62 DYPWPDS---V-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 62 ~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
-..-..+ + ...-.++..+..+++...+...- -..+...|.++.-++ .....-|.
T Consensus 81 ~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~N--L~l~q~~v~dli~e~--------------------~~~v~GV~ 138 (621)
T COG0445 81 MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPN--LHLLQGEVEDLIVEE--------------------GQRVVGVV 138 (621)
T ss_pred hccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCC--ceehHhhhHHHhhcC--------------------CCeEEEEE
Confidence 0000000 0 12222455666667766666532 134456777777654 01235567
Q ss_pred EecCCCCceeEEEeCEEEEeeccC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.++ ..+.|+.||++||++
T Consensus 139 t~~G-----~~~~a~aVVlTTGTF 157 (621)
T COG0445 139 TADG-----PEFHAKAVVLTTGTF 157 (621)
T ss_pred eCCC-----CeeecCEEEEeeccc
Confidence 7777 689999999999987
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.8e-05 Score=84.86 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=36.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||||||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 589999999999999999999999999999999877763
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-05 Score=77.53 Aligned_cols=97 Identities=28% Similarity=0.423 Sum_probs=77.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
+++||||+|+.|+.+|..|+++|++++++|+.+++++... . ..+...+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~------------------------------~--~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL------------------------------D--PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh------------------------------h--HHHHHHH
Confidence 6899999999999999999999999999999886653211 0 4677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE---EEEecCCCCceeEEEeCEEEEeecc
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT---VAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+..+.+++ .++++..+.+++... +... +...+. ..+.+|.+++++|.
T Consensus 185 ~~~l~~~gi--~~~~~~~~~~i~~~~----------------------~~~~~~~~~~~~~-----~~~~~d~~~~~~g~ 235 (415)
T COG0446 185 AELLEKYGV--ELLLGTKVVGVEGKG----------------------NTLVVERVVGIDG-----EEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHCCc--EEEeCCceEEEEccc----------------------CcceeeEEEEeCC-----cEEEeeEEEEeecc
Confidence 888888888 788999999999865 2111 333444 58999999999994
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 236 ~ 236 (415)
T COG0446 236 R 236 (415)
T ss_pred c
Confidence 4
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=78.02 Aligned_cols=103 Identities=30% Similarity=0.364 Sum_probs=74.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-------------------------------L--EDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------c--hhHHHHHH
Confidence 36899999999999999999999999999999763321 0 11356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++. + .+.+++++.+++... .....+...+ +...++.+|.||+|+|.
T Consensus 216 ~~~~l~~~-I--~i~~~~~v~~i~~~~---------------------~~~v~~~~~~---~~~~~i~~D~vi~a~G~-- 266 (460)
T PRK06292 216 AQKILSKE-F--KIKLGAKVTSVEKSG---------------------DEKVEELEKG---GKTETIEADYVLVATGR-- 266 (460)
T ss_pred HHHHHhhc-c--EEEcCCEEEEEEEcC---------------------CceEEEEEcC---CceEEEEeCEEEEccCC--
Confidence 77777776 7 799999999998654 1122332212 33357999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 267 -~p~~~ 271 (460)
T PRK06292 267 -RPNTD 271 (460)
T ss_pred -ccCCC
Confidence 46655
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=76.38 Aligned_cols=134 Identities=21% Similarity=0.179 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCC-------CCC--CC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWP-------DSV--TT 71 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~--~~ 71 (418)
.++|+|||||.++..++..|.+.+- +|+++-|+..+-..-. ..-...+-.|...-.|...+-. ..+ ..
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~-s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny 268 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD-SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY 268 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB-----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc-ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence 5789999999999999999999764 7999999752211000 0000112222221112111100 000 01
Q ss_pred CCCChhHHHH-----HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 72 DFPDHNQVLD-----YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 72 ~~~~~~~~~~-----~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
.-.+...+.+ |-+.+..+..+ .+..+++|++++..+ ++.|.+++++..++..
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~--~l~~~~~v~~~~~~~---------------------~~~~~l~~~~~~~~~~ 325 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRL--RLLPNTEVTSAEQDG---------------------DGGVRLTLRHRQTGEE 325 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---S--EEETTEEEEEEEEES----------------------SSEEEEEEETTT--E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCe--EEeCCCEEEEEEECC---------------------CCEEEEEEEECCCCCe
Confidence 1112222211 11222222233 567789999999887 4589999999888888
Q ss_pred eEEEeCEEEEeecc
Q 014821 147 EVHQVDFVILCVGR 160 (418)
Q Consensus 147 ~~i~~d~vIlAtG~ 160 (418)
.++.+|.||+|||.
T Consensus 326 ~~~~~D~VilATGy 339 (341)
T PF13434_consen 326 ETLEVDAVILATGY 339 (341)
T ss_dssp EEEEESEEEE---E
T ss_pred EEEecCEEEEcCCc
Confidence 99999999999995
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.6e-05 Score=75.42 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=70.7
Q ss_pred cEEEEcCCHHHHHHHHHHHh--------------CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLL--------------KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~--------------~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
+|+|||||++|+.+|..|+. .+.+|+++++.+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------- 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------- 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------------
Confidence 79999999999999999875 367899999875331
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
..+ ...+.+++++..++.++ ++..+++|.+++.+. |.+.++ .++.
T Consensus 224 ~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~~~--------------------------v~~~~g-----~~i~ 268 (424)
T PTZ00318 224 GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLDKE--------------------------VVLKDG-----EVIP 268 (424)
T ss_pred ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeCCE--------------------------EEECCC-----CEEE
Confidence 111 13567788888888899 899999999886433 555555 4899
Q ss_pred eCEEEEeeccC
Q 014821 151 VDFVILCVGRF 161 (418)
Q Consensus 151 ~d~vIlAtG~~ 161 (418)
+|.||+|+|..
T Consensus 269 ~d~vi~~~G~~ 279 (424)
T PTZ00318 269 TGLVVWSTGVG 279 (424)
T ss_pred ccEEEEccCCC
Confidence 99999999965
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=84.29 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=73.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+++|+++.+.+.. ..+ .......+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~------------------------------~~l--d~~~~~~l 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA------------------------------KQL--DQTAGRLL 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh------------------------------hhc--CHHHHHHH
Confidence 6799999999999999999999999999998652210 000 13456667
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
....++.|+ .+.+++.++++.... ....|.+.++ .++.+|.||+|+|..
T Consensus 189 ~~~l~~~GV--~v~~~~~v~~i~~~~----------------------~~~~v~~~dG-----~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 189 QRELEQKGL--TFLLEKDTVEIVGAT----------------------KADRIRFKDG-----SSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHcCC--EEEeCCceEEEEcCC----------------------ceEEEEECCC-----CEEEcCEEEECCCCC
Confidence 777788899 899999998887543 2234555555 479999999999954
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-05 Score=78.08 Aligned_cols=99 Identities=24% Similarity=0.236 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+++++.. +. ..+ ..++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~~~--d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL-------------------------------RGF--DRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc-------------------------------ccC--CHHHHHHH
Confidence 589999999999999999999999999998731 10 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ .+..++.+..++... +...+.+.++ .++.+|.|++|+|..
T Consensus 229 ~~~l~~~GV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g-----~~i~~D~vl~a~G~~-- 277 (499)
T PTZ00052 229 VEYMKEQGT--LFLEGVVPINIEKMD----------------------DKIKVLFSDG-----TTELFDTVLYATGRK-- 277 (499)
T ss_pred HHHHHHcCC--EEEcCCeEEEEEEcC----------------------CeEEEEECCC-----CEEEcCEEEEeeCCC--
Confidence 788888898 899999988887654 2244554444 368999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 278 -pn~~ 281 (499)
T PTZ00052 278 -PDIK 281 (499)
T ss_pred -CCcc
Confidence 5544
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=79.68 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||+|.|||.||..++ +.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 479999999999999999997 569999999775
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=6e-06 Score=88.24 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=59.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC---Cccc---cccCCcceecCC------------ccccc--cC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI---GGAW---IKTVETTMLQTP------------KQLYQ--FS 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~---gg~~---~~~~~~~~l~~~------------~~~~~--~~ 61 (418)
++|+|||||++|+++|..|+++ |++|+|+|+++.. |... ......+....+ ...+. +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 4799999999999999999998 8999999998753 3211 000000000000 00000 00
Q ss_pred CCCCCCCCCC-CCCChhHHHHHHHHHHHhcCcccceEeeeEEEEE
Q 014821 62 DYPWPDSVTT-DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGI 105 (418)
Q Consensus 62 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i 105 (418)
.......... ....+..+.+.|.+.+.+.++ .++++++|+++
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i 123 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDD 123 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCch
Confidence 0000000001 124678899999999988888 78888776554
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.9e-05 Score=71.82 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+.+|..|++.+.+|+++++.+.+. ....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~~~---- 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AEKI---- 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cCHH----
Confidence 3689999999999999999999999999999964110 0012
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+.+. ++ .+.+++.+.+++... ....+.+.+..++..+++.+|.||+|+|..
T Consensus 182 ~~~~l~~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 182 LLDRLRKNPNI--EFLWNSTVKEIVGDN----------------------KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred HHHHHHhCCCe--EEEeccEEEEEEccC----------------------cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 22333444 77 788888999987543 222344444333555789999999999954
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=72.53 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=72.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 3689999999999999999999999999999964210 01234455
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC-CCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK-NHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .+..++.++++.... ...-.|.+.+.. .+...++.+|.||+|+|..
T Consensus 191 ~~~~l~~~gV--~i~~~~~v~~v~~~~---------------------~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 191 LMDKVENGNI--ILHTNRTLEEVTGDQ---------------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHhhccCCCe--EEEeCCEEEEEEcCC---------------------ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 5666666677 788889999987543 122235554432 2334689999999999954
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.6e-05 Score=82.71 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=74.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+.. .. -..+....+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------------------------------~~--ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------------------------------EQ--LDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------------------------------hh--cCHHHHHHH
Confidence 5799999999999999999999999999999652210 00 113566778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++..++.|+ .+++++.+.++.... ......+...++ ..+.+|.||+|+|..
T Consensus 194 ~~~L~~~GV--~v~~~~~v~~I~~~~--------------------~~~~~~v~~~dG-----~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 194 RRKIESMGV--RVHTSKNTLEIVQEG--------------------VEARKTMRFADG-----SELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHCCC--EEEcCCeEEEEEecC--------------------CCceEEEEECCC-----CEEEcCEEEECCCcc
Confidence 888888899 899999999997543 012234555555 479999999999954
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.6e-05 Score=77.97 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=71.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|+..+.+|+++++.+.+. . ...+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~l 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKVL 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHHH
Confidence 689999999999999999999999999999864220 0 1123
Q ss_pred HHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 84 QSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 84 ~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...+++ .++ .+++++.+.++...+ +....|.+.+..++..+++.||.|++|+|..
T Consensus 394 ~~~l~~~~gV--~i~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~- 449 (515)
T TIGR03140 394 QDKLKSLPNV--DILTSAQTTEIVGDG---------------------DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV- 449 (515)
T ss_pred HHHHhcCCCC--EEEECCeeEEEEcCC---------------------CEEEEEEEEECCCCcEEEEEcCEEEEEeCCc-
Confidence 333443 477 889999999987653 1222366655544556789999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 450 --Pn~~ 453 (515)
T TIGR03140 450 --PNTE 453 (515)
T ss_pred --CCch
Confidence 5543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-05 Score=78.54 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=74.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . -..++..++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-------------------------------~--~d~eis~~l 359 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-------------------------------L--LDADVAKYF 359 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------------------------------c--CCHHHHHHH
Confidence 5899999999999999999999999999999764321 0 113566666
Q ss_pred HHHH-HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC---C-C------ceeEEEeC
Q 014821 84 QSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK---N-H------STEVHQVD 152 (418)
Q Consensus 84 ~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~-~------~~~~i~~d 152 (418)
.... ++.++ .+..++.|.+++... ......+...+.. + + ..+++.+|
T Consensus 360 ~~~ll~~~GV--~I~~~~~V~~I~~~~--------------------~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 360 ERVFLKSKPV--RVHLNTLIEYVRAGK--------------------GNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred HHHHhhcCCc--EEEcCCEEEEEEecC--------------------CceEEEEEEeccccccccccccccccceEEEcC
Confidence 6654 55788 899999999998654 0111334332211 0 1 12479999
Q ss_pred EEEEeeccCCCCCCCCC
Q 014821 153 FVILCVGRFSDVPNIPE 169 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~ 169 (418)
.|++|+|. .|+...
T Consensus 418 ~VlvAtGr---~Pnt~~ 431 (659)
T PTZ00153 418 SCLVATGR---KPNTNN 431 (659)
T ss_pred EEEEEECc---ccCCcc
Confidence 99999995 466543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-05 Score=81.66 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=32.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||+|.|||.+|..+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999763
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=75.07 Aligned_cols=38 Identities=37% Similarity=0.671 Sum_probs=34.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
+.+|+|||+|++||++|+.|.++ .+|++||.+...||.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 57999999999999999999864 799999999998884
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.5e-06 Score=83.28 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=37.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~ 44 (418)
++|+|||||+|||+||+.|++.| .+|+|+|+++++||..+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999997665
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.6e-05 Score=70.89 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=31.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..||+|||||.+|.++|..|++.|.+|.||||.-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4799999999999999999999999999999953
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.03 E-value=6e-05 Score=78.12 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHH----hCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLL----LKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~----~~~~~v~iie~~~ 36 (418)
||+|||+|.|||.||..++ +.|.+|+|+||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 7999999999999999998 6799999999965
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.4e-06 Score=83.75 Aligned_cols=44 Identities=36% Similarity=0.543 Sum_probs=39.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-----CceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-----FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-----~~v~iie~~~~~gg~~~~ 44 (418)
|+.+||+|||||++||++|+.|.+.| ++|+|+|+++.+||.+..
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 35689999999999999999999887 899999999999997766
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.3e-05 Score=78.17 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.++||+|||||.|||.||..++..|.+|+|+|+....+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 36899999999999999999999999999999977544
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.01 E-value=8e-06 Score=81.84 Aligned_cols=41 Identities=27% Similarity=0.539 Sum_probs=37.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+|+|||||.|||++|+.|.+.|++|+|+|+++++||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999997554
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.6e-05 Score=76.68 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=74.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|...+.+|+|+++.+.+. .. ...++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RG--FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999865331 00 11466677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.|+ ++..++.+.++.... ++...+...++ ....+|.||+|+|..
T Consensus 299 l~~~L~~~GV--~i~~~~~v~~i~~~~---------------------~g~v~v~~~~g-----~~~~~D~Viva~G~~- 349 (558)
T PLN02546 299 VAEQMSLRGI--EFHTEESPQAIIKSA---------------------DGSLSLKTNKG-----TVEGFSHVMFATGRK- 349 (558)
T ss_pred HHHHHHHCCc--EEEeCCEEEEEEEcC---------------------CCEEEEEECCe-----EEEecCEEEEeeccc-
Confidence 7777888898 899999999997644 12233332221 344589999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 350 --Pnt~ 353 (558)
T PLN02546 350 --PNTK 353 (558)
T ss_pred --cCCC
Confidence 5543
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.9e-06 Score=82.13 Aligned_cols=42 Identities=36% Similarity=0.565 Sum_probs=38.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++||++|+.|.++ |.+|+|+|+++++||..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 47999999999999999999998 9999999999999997655
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=78.24 Aligned_cols=41 Identities=37% Similarity=0.573 Sum_probs=37.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~ 44 (418)
++|+|||||.+||++|+.|.+++ .+++|||+.+++||..++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 46999999999999999999998 899999999999987666
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=77.99 Aligned_cols=42 Identities=40% Similarity=0.701 Sum_probs=37.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~ 44 (418)
..+|||||||.|||+||.+|.+.|+ ++.|+|..+++||.-+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 3589999999999999999998775 89999999999997665
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=81.80 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=42.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQT 53 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~ 53 (418)
+||+|||||.+||++|..|++.|++|+|+|+++.+||.... ..++..+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~ 52 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDV 52 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEee
Confidence 68999999999999999999999999999999999986555 445544433
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=1e-05 Score=80.90 Aligned_cols=40 Identities=43% Similarity=0.646 Sum_probs=37.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|+|||||++||++|+.|++.|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6899999999999999999999999999999999997544
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=73.68 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=28.5
Q ss_pred EEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 8 IIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|||+|.+|+++|..+++.|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=75.22 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||.+|+.+|..|+..+.+|+++++.+.+. . . .+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~-~---~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A-D---QV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c-c---HH
Confidence 3689999999999999999999999999999864220 0 0 12
Q ss_pred HHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+...... .++ ++.+++.++++...+ +..-.+.+.+..++..+++.||.|++|+|..
T Consensus 392 l~~~l~~~~gI--~i~~~~~v~~i~~~~---------------------g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 392 LQDKLRSLPNV--TIITNAQTTEVTGDG---------------------DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHhcCCCc--EEEECcEEEEEEcCC---------------------CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 3333333 477 789999999998653 1222355665555666789999999999965
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.8e-05 Score=74.29 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=33.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+|+|||||.+|+.+|..|+++|++|+|||+++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 4799999999999999999999999999998776543
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=80.26 Aligned_cols=47 Identities=36% Similarity=0.527 Sum_probs=41.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc-cCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK-TVETT 49 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~-~~~~~ 49 (418)
.+||+|||||++||++|+.|+++|. +++|+|+++++||.+.. .+++.
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 4799999999999999999999998 69999999999997765 44443
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=80.55 Aligned_cols=42 Identities=48% Similarity=0.667 Sum_probs=38.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++||++|+.|.+. |++|+|+|+++++||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 47899999999999999999999 9999999999999986554
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=61.46 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=27.7
Q ss_pred EEEcCCCCHHHHHHHHhhhc--CCCCCeEEEEecCc
Q 014821 207 TVVGLQKSALDIAMECTTAN--GLENPCTVLYRTEH 240 (418)
Q Consensus 207 ~VvG~G~sa~e~a~~l~~~~--~~~~~V~~~~r~~~ 240 (418)
+|||+|.+|+-++..|.... ....+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999999884 33356999998653
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=77.00 Aligned_cols=41 Identities=34% Similarity=0.488 Sum_probs=37.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 79999999999999999999999999999999889885433
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=80.18 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=41.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCccee
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTML 51 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l 51 (418)
+||+|||||.+||++|..|+++|++|+|+|+++.+||.... ..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~f 49 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRF 49 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEE
Confidence 58999999999999999999999999999999999986555 3344443
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=78.05 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=37.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++|+|+|||.|||++|..|+++|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 57999999999999999999999999999999999985443
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=80.04 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=36.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC------CCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~------~~~v~iie~~~~~gg~~~~ 44 (418)
++|+|||||++||++|+.|.+. +.+|+|+|+++++||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 6799999999999999999985 3799999999999997555
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.84 E-value=2e-05 Score=80.47 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=36.6
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|||||||.+||++|..|++.|++|+|+|+++.+||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 699999999999999999999999999999999997555
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=69.14 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=65.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHh----CC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 4 KQIAIVGAGVSGLLACKYLLL----KG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~----~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
++|+|||+|++|+.+|..|++ .+ .+|+|+ ..+.+. .. ...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------~~--~~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------PG--FPA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc-------------------------------cc--CCH
Confidence 589999999999999999975 34 478888 322110 00 113
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
.+...+.+..++.++ ++..++++.+++.. .+.+.++ .++.+|.||+|
T Consensus 192 ~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~--------------------------~v~~~~g-----~~i~~D~vi~a 238 (364)
T TIGR03169 192 KVRRLVLRLLARRGI--EVHEGAPVTRGPDG--------------------------ALILADG-----RTLPADAILWA 238 (364)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCeeEEEcCC--------------------------eEEeCCC-----CEEecCEEEEc
Confidence 556677778888898 88998888887522 2555554 58999999999
Q ss_pred eccC
Q 014821 158 VGRF 161 (418)
Q Consensus 158 tG~~ 161 (418)
+|..
T Consensus 239 ~G~~ 242 (364)
T TIGR03169 239 TGAR 242 (364)
T ss_pred cCCC
Confidence 9965
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=78.32 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=41.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|+.+||+|||+|.+|+.+|..|++.|++|+++|+++..||.|..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 35799999999999999999999999999999999999998876
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.7e-05 Score=69.33 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=54.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCc-ceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVET-TMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|++|||||.+|+.+|..|+++|.+|.|+|+++.+||-....... ..+..=. .+...+..+...+.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk-----------YGpHIFHT~~~~Vwd 69 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK-----------YGPHIFHTDNKRVWD 69 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee-----------ccCceeecCchHHHH
Confidence 4799999999999999998899999999999999999987663321 2221100 000133345568888
Q ss_pred HHHHHHHh
Q 014821 82 YIQSYASH 89 (418)
Q Consensus 82 ~l~~~~~~ 89 (418)
|+.++.+-
T Consensus 70 yv~~F~e~ 77 (374)
T COG0562 70 YVNQFTEF 77 (374)
T ss_pred HHhhhhhh
Confidence 88887654
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=73.79 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCE
Q 014821 74 PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDF 153 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~ 153 (418)
.+...+.+.+...++++|. .++.++.|++|.-.. ++.+-|.+..+ .+++.+
T Consensus 184 ~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~---------------------~~~~gVeT~~G------~iet~~ 234 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGA--LVIENCPVTGLHVET---------------------DKFGGVETPHG------SIETEC 234 (856)
T ss_pred cCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeec---------------------CCccceeccCc------ceecce
Confidence 3556677888889999999 899999999998876 45667777776 699999
Q ss_pred EEEeeccCC
Q 014821 154 VILCVGRFS 162 (418)
Q Consensus 154 vIlAtG~~~ 162 (418)
+|.|+|.+.
T Consensus 235 ~VNaaGvWA 243 (856)
T KOG2844|consen 235 VVNAAGVWA 243 (856)
T ss_pred EEechhHHH
Confidence 999999763
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=69.84 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
||+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 999999999999999999988 99999999763
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=68.40 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=82.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
..||++|+|..|+.+|..|...+.++++|++.+.+- .. .-...+.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~------------------------------~~--lf~~~i~~~~ 261 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL------------------------------PR--LFGPSIGQFY 261 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccch------------------------------hh--hhhHHHHHHH
Confidence 569999999999999999999999999999975220 00 1124677777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
..+.++.++ ++..++.+.+++.+. .+..-.|.+.++ .++.||.||+.+|+
T Consensus 262 ~~y~e~kgV--k~~~~t~~s~l~~~~--------------------~Gev~~V~l~dg-----~~l~adlvv~GiG~--- 311 (478)
T KOG1336|consen 262 EDYYENKGV--KFYLGTVVSSLEGNS--------------------DGEVSEVKLKDG-----KTLEADLVVVGIGI--- 311 (478)
T ss_pred HHHHHhcCe--EEEEecceeecccCC--------------------CCcEEEEEeccC-----CEeccCeEEEeecc---
Confidence 888888898 899999999998877 123345667777 69999999999995
Q ss_pred CCCCCCCC
Q 014821 164 VPNIPEFP 171 (418)
Q Consensus 164 ~p~~p~~~ 171 (418)
.|+.+-+.
T Consensus 312 ~p~t~~~~ 319 (478)
T KOG1336|consen 312 KPNTSFLE 319 (478)
T ss_pred cccccccc
Confidence 57766544
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=67.58 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=29.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
++++|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999998987 99999854
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.4e-05 Score=76.95 Aligned_cols=40 Identities=48% Similarity=0.765 Sum_probs=37.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|+|||||++||++|..|.++|++|+|+|+++.+||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997554
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.6e-05 Score=80.09 Aligned_cols=43 Identities=40% Similarity=0.631 Sum_probs=39.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
..++|+|||||++||++|..|++.|++|+|+|+++++||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 3579999999999999999999999999999999988886554
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=64.90 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=65.88 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=30.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|+.+|..|.+.|. +|+++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999987 899999864
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00031 Score=64.71 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=33.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
+++|+||||||..|++.|+.|.-+ +.+|.|+|+..+++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 468999999999999999999876 78999999987664
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=60.85 Aligned_cols=41 Identities=27% Similarity=0.517 Sum_probs=35.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--CCCcc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--DIGGA 41 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--~~gg~ 41 (418)
|...|++|||+|.+||.+|..|+..|++|+|+|... .+||.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 457899999999999999999999999999999765 45554
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.6e-05 Score=74.25 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=34.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||||.+|..+|.-.+-+|.++.++|+++...|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 48999999999999999999999999999999876554
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0023 Score=64.58 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=30.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||||..|+-+|..|.+.|.+|+++.+.+
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00078 Score=69.62 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||||+.|+.+|..|.+.+.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3689999999999999999999999999999964
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00066 Score=61.91 Aligned_cols=37 Identities=32% Similarity=0.566 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC------CceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG------FHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~------~~v~iie~~~~~g 39 (418)
.++|+|+|||..|+..|++|.+++ .+++|||...-.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 579999999999999999999986 6899999865433
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=71.52 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
++||+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 479999999999999999999999999999987644
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=77.41 Aligned_cols=42 Identities=38% Similarity=0.672 Sum_probs=38.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++|+++|+.|.+.|++|+|+|++.++||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 578999999999999999999999999999999999886444
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=74.11 Aligned_cols=40 Identities=40% Similarity=0.550 Sum_probs=36.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999986444
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00038 Score=66.63 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC--CCC-CcchhhhhhHHHHHhhcCCC-chhHHHHH
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYF--PWG-FPLAYLYLNRFAELLVHKPG-EGFLLSLL 278 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~--~~g-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (418)
...|+|||+|++|+-+|..+..+|.. |.++.+.+.. ..... ..| =.+.+... ..+++.+-|. ..+++
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~-GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~--- 73 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKL-GRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLK--- 73 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccc-cceeEecCCCCcccccccc--HHHHHHhCCCcchHHH---
Confidence 35799999999999999999888765 9999886531 11100 000 11111111 2233333331 12222
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc-ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc---
Q 014821 279 ATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH-SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG--- 353 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~--- 353 (418)
..++.+-...+.......+..+.-+. +.....+.. -..+-+.++..+++.+|+++..+ |..+..+.
T Consensus 74 --------sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f 144 (408)
T COG2081 74 --------SALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF 144 (408)
T ss_pred --------HHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE
Confidence 23333333333222222222211111 000000000 01122356678889999999987 87877652
Q ss_pred -EEEcCCceeeeccEEEEccCCCCCc
Q 014821 354 -IVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 354 -v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+|++ +.+|.+|+|||=.+-+
T Consensus 145 ~l~t~~g~~-i~~d~lilAtGG~S~P 169 (408)
T COG2081 145 RLDTSSGET-VKCDSLILATGGKSWP 169 (408)
T ss_pred EEEcCCCCE-EEccEEEEecCCcCCC
Confidence 66678887 9999999999955443
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00018 Score=68.99 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=72.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--------------CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSV 69 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--------------~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (418)
-.+|||||||+|+..|..|+.. .++|+++|+.+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 3689999999999999999752 34799999875221
Q ss_pred CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEE
Q 014821 70 TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH 149 (418)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 149 (418)
.. -...+.+|.+....+.++ .+..++.|..+.... ++...+ +|+..+|
T Consensus 269 -~m--Fdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~~~--------------------------I~~~~~-~g~~~~i 316 (491)
T KOG2495|consen 269 -NM--FDKRLVEYAENQFVRDGI--DLDTGTMVKKVTEKT--------------------------IHAKTK-DGEIEEI 316 (491)
T ss_pred -HH--HHHHHHHHHHHHhhhccc--eeecccEEEeecCcE--------------------------EEEEcC-CCceeee
Confidence 00 013455666666666677 788888888887655 444443 4667899
Q ss_pred EeCEEEEeeccCCCCCCCCC
Q 014821 150 QVDFVILCVGRFSDVPNIPE 169 (418)
Q Consensus 150 ~~d~vIlAtG~~~~~p~~p~ 169 (418)
.|-.+|.|||.. .+|.+-.
T Consensus 317 PYG~lVWatG~~-~rp~~k~ 335 (491)
T KOG2495|consen 317 PYGLLVWATGNG-PRPVIKD 335 (491)
T ss_pred cceEEEecCCCC-Cchhhhh
Confidence 999999999987 4665433
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=62.15 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=74.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccccccCCccee--cCCccccccCCCCC-------CCCC-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIKTVETTML--QTPKQLYQFSDYPW-------PDSV- 69 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~~~~~~~~l--~~~~~~~~~~~~~~-------~~~~- 69 (418)
..|+|||+|.++..+...|... ..++.++-|+..+- ...|..+.+ -+|...-.|...+- ....
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~---p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~ 264 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL---PMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRL 264 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC---ccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCc
Confidence 3499999999999999999874 23566777765221 111111111 11222111211110 0000
Q ss_pred CCCCCChhHHHHHHHHHH-HhcCc-cc--ceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 70 TTDFPDHNQVLDYIQSYA-SHFDL-RK--HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~-~~~~~-~~--~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
...-.+.+.+.+.....- ++.+- .. .+.-+++|.+++... ++.+.++++..++++
T Consensus 265 ~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G---------------------~g~~~l~~~~~~~~~ 323 (436)
T COG3486 265 LYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAG---------------------DGRYRLTLRHHETGE 323 (436)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCC---------------------CceEEEEEeeccCCC
Confidence 111112223332221111 12211 11 455678888888776 355899999988899
Q ss_pred eeEEEeCEEEEeeccC
Q 014821 146 TEVHQVDFVILCVGRF 161 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~ 161 (418)
.+++.+|.||+|||..
T Consensus 324 ~~t~~~D~vIlATGY~ 339 (436)
T COG3486 324 LETVETDAVILATGYR 339 (436)
T ss_pred ceEEEeeEEEEecccc
Confidence 9999999999999965
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00036 Score=67.70 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+||||||||.||..+|.+.++.|.+.+++-.+-
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 5799999999999999999999999988887653
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00016 Score=70.15 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=33.6
Q ss_pred chhhhhcc-CcEEEeccCceeEec-C----cEEEcCCceeeeccEEEEccCC
Q 014821 329 KFYDKVEE-GSIILKKSQDFSFCE-D----GIVVDGQTTPLKTDLVILATGF 374 (418)
Q Consensus 329 ~~~~~~~~-~~v~~~~~~v~~~~~-~----~v~~~~g~~~~~~D~Vi~atG~ 374 (418)
.+.+.+++ .+|+++.+.|..+.- + +|.+.+|+. +.+|.||+|||.
T Consensus 100 ~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~-~~a~~vVlaTGt 150 (392)
T PF01134_consen 100 AMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEE-IEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEE-EEECEEEE-TTT
T ss_pred HHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCE-EecCEEEEeccc
Confidence 34455554 899999888777642 2 488899998 999999999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00015 Score=74.47 Aligned_cols=42 Identities=36% Similarity=0.539 Sum_probs=38.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 359999999999999999999999999999999999986544
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0047 Score=66.28 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
++|||||||..|+-+|..|.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999987 99999864
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0027 Score=61.71 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.++...++++.+.+|. ++.|+++|.+++..+ +....|.+.++ .++.+|+||+
T Consensus 173 ~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~---------------------~~~~~v~~~~g-----~~i~~~~vvl 224 (486)
T COG2509 173 PKVVKNIREYLESLGG--EIRFNTEVEDIEIED---------------------NEVLGVKLTKG-----EEIEADYVVL 224 (486)
T ss_pred HHHHHHHHHHHHhcCc--EEEeeeEEEEEEecC---------------------CceEEEEccCC-----cEEecCEEEE
Confidence 4556778888889998 899999999999877 23456777776 6999999999
Q ss_pred eeccCC
Q 014821 157 CVGRFS 162 (418)
Q Consensus 157 AtG~~~ 162 (418)
|.|..+
T Consensus 225 A~Grsg 230 (486)
T COG2509 225 APGRSG 230 (486)
T ss_pred ccCcch
Confidence 999874
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=65.07 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.++|+|||+|.+|+-+|..|...|.. |+++.+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 56899999999999999999888765 999998764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00034 Score=71.05 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999853
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00026 Score=73.23 Aligned_cols=41 Identities=41% Similarity=0.704 Sum_probs=37.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
.++|+|||||++||++|+.|.++|++++|+|+++.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 47899999999999999999999999999999998888643
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00028 Score=74.93 Aligned_cols=42 Identities=43% Similarity=0.642 Sum_probs=39.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++|+.+|..|.+.|++++|+|+++++||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 479999999999999999999999999999999999997665
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00026 Score=73.10 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=35.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--CCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--DIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--~~gg 40 (418)
.+||+|||+|.+||++|..+++.|.+|+|||+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 5899999999999999999999999999999988 5555
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=58.48 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=31.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~ 37 (418)
.+||+|||||-.|.+.|.-|.++ |++|+++|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 57999999999999999998763 789999999874
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=66.74 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=29.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
||++|||+|++|..+|.+|++.+ .+|+|+|+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 69999999999999999999987 6999999975
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00025 Score=69.90 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=32.3
Q ss_pred cCcchhhhhccCcEEEeccC-ceeEe--cCc---EEEcCCceeeeccEEEEccCCCCC
Q 014821 326 VPEKFYDKVEEGSIILKKSQ-DFSFC--EDG---IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~---v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+-+.+...+++.+++++.+. |..+. +++ |.++++.+ +.+|.||+|||-..-
T Consensus 111 Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~-~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 111 VVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGE-YEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEE-EEESEEEE----SSS
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCccc-ccCCEEEEecCCCCc
Confidence 34566677888899999987 77774 344 55656666 999999999997754
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0004 Score=76.53 Aligned_cols=42 Identities=48% Similarity=0.705 Sum_probs=39.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++|+++|..|.+.|++++|||+++.+||.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 478999999999999999999999999999999999997666
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0041 Score=61.57 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=34.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~ 42 (418)
.++.=|||+|.|+|++|.+|.+- |.+|+|+|+.+..||..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 46778999999999999999984 55999999999888743
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00044 Score=70.41 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=36.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
+||+|||+|++|+.+|+.|++.|++|++||+....|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999888766
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00088 Score=65.54 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.1
Q ss_pred CceeEecCcEEEcCCceeeeccEEEEccCCCCC
Q 014821 345 QDFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 345 ~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+..++.++|++++|++ +.+|.||.|.|..+.
T Consensus 108 ~V~~v~~~~v~l~dg~~-~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 108 KAVGLDADGVDLAPGTR-INARSVIDCRGFKPS 139 (370)
T ss_pred EEEEEeCCEEEECCCCE-EEeeEEEECCCCCCC
Confidence 47788888899999998 999999999998864
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.016 Score=61.18 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=29.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|+.+|..|.+.|. +|+|+.+.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999886 699999864
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=65.26 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=35.2
Q ss_pred chhhhhccCcEEEeccCceeEecC----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 329 KFYDKVEEGSIILKKSQDFSFCED----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 329 ~~~~~~~~~~v~~~~~~v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.+.+++++...+..++.+ .|++++|.+ +++|.||.|+|..+.
T Consensus 119 ~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~-i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 119 KMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVK-IQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCE-EEcCEEEECcCCCcC
Confidence 444555566788876666666532 377889988 999999999999865
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0058 Score=64.51 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=29.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|. +|+++.+++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 589999999999999999999886 699988864
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0053 Score=67.07 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=30.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999999999999998864
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.012 Score=59.53 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=27.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
++|+|||+|..|+.+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 689999999999999999888876 68866654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.018 Score=58.24 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++++|||+|..|+.+|..+.+.|. +|+|+++++
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 689999999999999999999885 799999865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00097 Score=61.11 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-------CceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-------~~v~iie~~~ 36 (418)
|...+|+|||+|..|++.|.++.+.. .++.|++.+.
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 56789999999999999999988842 4788887655
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0063 Score=62.16 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
++|+|||+|.+|+-+|..|+..+.. -+|+++.++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~-l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTP-LSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCC-CcEEEEecCCC
Confidence 5899999999999999999875432 46999998653
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0018 Score=63.54 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=36.1
Q ss_pred chhhhhccCcEEEeccCceeEecCc----EEEcCCceeeeccEEEEccCCCCC
Q 014821 329 KFYDKVEEGSIILKKSQDFSFCEDG----IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 329 ~~~~~~~~~~v~~~~~~v~~~~~~~----v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.++++..+...|..++.++ |++++|++ +.++.||-|+|..+.
T Consensus 92 ~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~-i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 92 FLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRT-IRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCE-EEeeEEEECCCcccc
Confidence 3344555567777777788887654 57889998 999999999997655
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0009 Score=64.34 Aligned_cols=42 Identities=38% Similarity=0.535 Sum_probs=35.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~ 44 (418)
.++|+|+|||.+||++|++|++..- .++++|+.+++||-.+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 3789999999999999999999865 46779999998864333
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00089 Score=67.51 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhh--hcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTT--ANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~--~~~~~~~V~~~~r~~~ 240 (418)
..+++|+|||+|.+|+.+|..|+. .+. +|+++.+.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecCCC
Confidence 457899999999999999999986 444 5999998763
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0098 Score=58.55 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=30.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+.+|..|++.-.....|.++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 5899999999999999999986554344899888764
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00062 Score=59.22 Aligned_cols=55 Identities=27% Similarity=0.568 Sum_probs=42.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC-ccccc--cCCcceecCCcccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG-GAWIK--TVETTMLQTPKQLY 58 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g-g~~~~--~~~~~~l~~~~~~~ 58 (418)
.||+|||+|.+||++|+...++ ..++.|||..-.+| |.|.- .+....+..|+.++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLF 136 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLF 136 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHH
Confidence 5999999999999999999865 56899999977665 46776 55555556666543
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=61.32 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++||+|||||.+|++++..|.++|++++|+...-
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999999853
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.003 Score=61.89 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=30.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
++|+|||+|..|.-+|..|+..|.. |+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCC
Confidence 5799999999999999999988765 999999864
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.008 Score=66.36 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=65.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++|+|||+|+.|+.+|..|++.|. .++|+|..+.+ ...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~~ 356 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SPE 356 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hHH
Confidence 689999999999999999999996 57888875311 112
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+...+++.++ .++.++.++.+..+. ..-.|.+... ++...++.||.|+++.|..
T Consensus 357 l~~~L~~~GV--~i~~~~~v~~i~g~~----------------------~v~~V~l~~~-~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 357 ARAEARELGI--EVLTGHVVAATEGGK----------------------RVSGVAVARN-GGAGQRLEADALAVSGGWT 410 (985)
T ss_pred HHHHHHHcCC--EEEcCCeEEEEecCC----------------------cEEEEEEEec-CCceEEEECCEEEEcCCcC
Confidence 3344566788 888888898887543 2122444321 1334689999999999954
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=69.67 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+++|+|||+|.+|+.+|..|+..|.. |+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccc
Confidence 3578999999999999999999998865 999997653
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0047 Score=57.56 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=34.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
|....|-|||||.||..+|+.++++|+.|.++|-++.-
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 56678999999999999999999999999999987643
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0014 Score=67.94 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~ 36 (418)
.+|+||||+|.+|+.+|..|++ .+.+|+|||+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5799999999999999999999 799999999985
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=56.62 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~ 35 (418)
.+||+|+|||+.|+++|..|... ..++.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 68999999999999999999864 3589999987
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0048 Score=62.14 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+-+|..|...+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4789999999999999999999999999999854
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.048 Score=56.62 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
.++|+|||+|..|+.++..+.+.+ .+++|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999888887 5788888854
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0086 Score=58.98 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...+|+|||||.+|.-+|..|...|.. |+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 457899999999999999999998765 999999864
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=58.13 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|.-+|..|...|.. |+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcc
Confidence 46899999999999999999988765 999999864
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0038 Score=55.27 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=23.4
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 207 TVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 207 ~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|||+|.+|+-+|..|.+.+.. +|+++.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCC
Confidence 6999999999999999998653 489999874
|
... |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.007 Score=59.56 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.-+|..|...|.. |.++.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCC
Confidence 389999999999999999877654 999998764
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=60.73 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||||..|+++|..++..|.. |.++.++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCc---EEEEeccc
Confidence 5799999999999999999988765 99999864
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0023 Score=56.48 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|..|+.+|..|...+.. |+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccc
Confidence 589999999999999999976654 88886544
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0096 Score=60.55 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 5799999999999999999998865 999998764
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0071 Score=60.24 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|..|+|+|.+.+..|.. +.+++-+..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~d 38 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLD 38 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe---EEEEEcCCC
Confidence 5799999999999999999888865 788777643
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.027 Score=53.38 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=69.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||-+++..|..|.+.+.+|+++=|++.+ .....
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-----------------------------------ra~~~---- 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-----------------------------------RAEEI---- 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-----------------------------------CcCHH----
Confidence 359999999999999999999999999999997522 11122
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+... ++ .+.+++.+..+..++ .-.|.+++.+ +....+.+|.|+++.|.
T Consensus 184 ~~~~l~~~~~i--~~~~~~~i~ei~G~~-----------------------v~~v~l~~~~-~~~~~~~~~gvf~~iG~- 236 (305)
T COG0492 184 LVERLKKNVKI--EVLTNTVVKEILGDD-----------------------VEGVVLKNVK-GEEKELPVDGVFIAIGH- 236 (305)
T ss_pred HHHHHHhcCCe--EEEeCCceeEEecCc-----------------------cceEEEEecC-CceEEEEeceEEEecCC-
Confidence 23333333 55 788899999988643 1135555544 55678999999999995
Q ss_pred CCCCCC
Q 014821 162 SDVPNI 167 (418)
Q Consensus 162 ~~~p~~ 167 (418)
.|+.
T Consensus 237 --~p~~ 240 (305)
T COG0492 237 --LPNT 240 (305)
T ss_pred --CCch
Confidence 4554
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.12 Score=54.50 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=29.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999888885 799998864
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=50.67 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||||..|+.+|..+.+.+. +|++++..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 689999999999999888888775 799998865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=57.82 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=29.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|.+|.-+|..|+..|.. |+++.+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCC
Confidence 799999999999999999988765 999998764
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.028 Score=62.06 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|.+ |+++.++.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 6899999999999999999999874 77777653
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=57.75 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|.+|.-+|..|...|.. |+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 699999999999999999998765 999999875
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.005 Score=62.83 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|.+|.-+|..|+..|.. |.++.+..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~ 141 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL 141 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcc
Confidence 35799999999999999999888765 99987643
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.038 Score=55.89 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..+.+.|.. |.++.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~---V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFD---VTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4799999999999999999887765 99998764
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=56.63 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=67.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC----CCc-eEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCCh
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK----GFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~----~~~-v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (418)
++..|.|||.|+-|..+|+.|.++ |.+ +.+|+.....+ ... .
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~-------------------------------kiL--P 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME-------------------------------KIL--P 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh-------------------------------hhh--H
Confidence 357899999999999999999874 222 34555532111 000 1
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.-+.++-.+.+++-|+ .++-|..|.++.... +...+.+.++ .++..|.||+
T Consensus 393 eyls~wt~ekir~~GV--~V~pna~v~sv~~~~----------------------~nl~lkL~dG-----~~l~tD~vVv 443 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGV--DVRPNAKVESVRKCC----------------------KNLVLKLSDG-----SELRTDLVVV 443 (659)
T ss_pred HHHHHHHHHHHHhcCc--eeccchhhhhhhhhc----------------------cceEEEecCC-----CeeeeeeEEE
Confidence 2233444455666688 788888888887755 5567788888 6999999999
Q ss_pred eeccC
Q 014821 157 CVGRF 161 (418)
Q Consensus 157 AtG~~ 161 (418)
|+|..
T Consensus 444 avG~e 448 (659)
T KOG1346|consen 444 AVGEE 448 (659)
T ss_pred EecCC
Confidence 99965
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0063 Score=61.22 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=34.0
Q ss_pred CcchhhhhccCcEEEeccCceeE--ecC----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEEGSIILKKSQDFSF--CED----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~v~~~--~~~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..-+.+...+.+|+++.+.|..+ .++ .|++++|++ +++|.+|-|||++..
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~-i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRT-IEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEE-EEESEEEE-SGGG-C
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCE-EEEeEEEECCCccch
Confidence 34455666667899999886544 333 367889988 999999999999866
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.005 Score=60.53 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=31.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+||+|||+|.+|+++|..|.++|.+++|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.056 Score=59.07 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC-CC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~-~~-~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 6899999999999999998875 75 799999864
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0093 Score=55.79 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=78.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQ 84 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (418)
+-+|||||+.+|.+|-.|.-.|+++++.=|+--. ..|. +++...+.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--------------------------------rGFD--qdmae~v~ 245 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--------------------------------RGFD--QDMAELVA 245 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--------------------------------cccc--HHHHHHHH
Confidence 5689999999999999999999999988884211 1111 57788888
Q ss_pred HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 85 SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 85 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+++.|+ .+...+..+.++..+ ++...|..++..++....-.||.|++|.|.-
T Consensus 246 ~~m~~~Gi--kf~~~~vp~~Veq~~---------------------~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 246 EHMEERGI--KFLRKTVPERVEQID---------------------DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHhCC--ceeecccceeeeecc---------------------CCcEEEEeecccccccccchhhhhhhhhccc
Confidence 88888898 777767777888766 4557777777766666778999999999965
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.034 Score=55.13 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=36.7
Q ss_pred cchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+++.+++++.+. +..++. ++ |++++|++ +.+|.||.|.|..+.
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQ-LRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 345566666778888875 666643 33 66788888 999999999998765
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0045 Score=63.73 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
|+||||+|.+|+.+|..|++.+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999988 6999999986
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.005 Score=63.29 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+||||+|.+|..+|..|+..+.+|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5899999999999999999998899999999984
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.026 Score=53.10 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=74.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.++..|--++..|-++.+|=|.+.+= ..|. ..+.+.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------------------R~FD--~~i~~~ 235 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------------------RGFD--EMISDL 235 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------------------cchh--HHHHHH
Confidence 5799999999999999999999999999988865331 1111 345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..+.-++ +++.++.++.+.... ++...+....+ ..-..|.|+.|+|.
T Consensus 236 v~~~~~~~gi--nvh~~s~~~~v~K~~---------------------~g~~~~i~~~~-----~i~~vd~llwAiGR-- 285 (478)
T KOG0405|consen 236 VTEHLEGRGI--NVHKNSSVTKVIKTD---------------------DGLELVITSHG-----TIEDVDTLLWAIGR-- 285 (478)
T ss_pred HHHHhhhcce--eecccccceeeeecC---------------------CCceEEEEecc-----ccccccEEEEEecC--
Confidence 6666666687 788889999988876 23344544444 23459999999995
Q ss_pred CCCCCCCC
Q 014821 163 DVPNIPEF 170 (418)
Q Consensus 163 ~~p~~p~~ 170 (418)
.|+..++
T Consensus 286 -~Pntk~L 292 (478)
T KOG0405|consen 286 -KPNTKGL 292 (478)
T ss_pred -CCCcccc
Confidence 4766554
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=56.27 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=37.7
Q ss_pred cCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 326 VPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+...+.+.+.+.+++++.+. +..++. +. +++++|++ +.+|.||.|+|..+.
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSV-LEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCE-EEeCEEEEcCCCChH
Confidence 34455666667788888776 666643 33 66778888 999999999998865
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=57.66 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 35799999999999999999998865 999999764
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.029 Score=55.25 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|...|.. |+++.|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCc
Confidence 4699999999999999999998765 999999874
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.021 Score=56.07 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=36.1
Q ss_pred Ccchhhhhcc-CcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEE-GSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~-~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
...+.+.+.+ .+++++.+. +..+.. ++ +++++|++ +.+|.||.|.|....
T Consensus 108 ~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~-~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 108 GQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQ-LRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCE-EEeeEEEEecCCChH
Confidence 3445555665 489998775 766643 33 66778887 999999999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.014 Score=57.53 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=38.9
Q ss_pred cCcchhhhhc-cCcEEEeccC-ceeEecCc----EEEc-CCceeeeccEEEEccCCCCC
Q 014821 326 VPEKFYDKVE-EGSIILKKSQ-DFSFCEDG----IVVD-GQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 326 ~~~~~~~~~~-~~~v~~~~~~-v~~~~~~~----v~~~-~g~~~~~~D~Vi~atG~~~~ 377 (418)
+...+.+.+. .++|+++.+. +..++.+. ++++ ||++ +++|+||-|=|..+.
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~-~~a~llVgADG~~S~ 163 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET-LDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE-EecCEEEECCCCchH
Confidence 3445666765 4669999987 77776443 7778 9997 999999999998755
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0084 Score=59.97 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhh-hcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTT-ANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~-~~~~~~~V~~~~r~~~ 240 (418)
..+++|+|||+|++|+.+|..|+. .+. +|+++.+.+.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCC
Confidence 357899999999999999998765 444 4999999874
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.035 Score=54.65 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=29.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+|+|||+|..|.-+|..|...|.. |+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCC
Confidence 4799999999999999999988765 99999765
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.008 Score=62.36 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+|++|||||.+|+.+|..|++ +.+|+|||+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5899999999999999999999 689999999863
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.029 Score=50.75 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=27.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+.+|||||..|+-.|..|+..... ..|-+++-++
T Consensus 1 kfivvgggiagvscaeqla~~~ps-a~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPS-AEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCC-CcEEEEeccH
Confidence 368999999999999999886554 4577777665
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.031 Score=55.06 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=37.2
Q ss_pred CcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.+++.+++++.+. +..+.. ++ +++++|++ +.+|.||.|+|..+.
T Consensus 116 ~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 116 VDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRR-LEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 3455566777788888876 666643 22 56678888 999999999999875
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.065 Score=50.51 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+-+||+|||||-+|+.+|+-|+-.-..|+++|=.+.. ..-.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL---------------------------------------kAD~ 393 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL---------------------------------------KADA 393 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh---------------------------------------hhHH
Confidence 3589999999999999999999655578888864311 1122
Q ss_pred HHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 YIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 ~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
-|++....+ ++ .+..|..-+.|..+. ++---+.+.+..++....+.-+-|.+-.|
T Consensus 394 VLq~kl~sl~Nv--~ii~na~Ttei~Gdg---------------------~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG- 449 (520)
T COG3634 394 VLQDKLRSLPNV--TIITNAQTTEVKGDG---------------------DKVTGLEYRDRVSGEEHHLELEGVFVQIG- 449 (520)
T ss_pred HHHHHHhcCCCc--EEEecceeeEEecCC---------------------ceecceEEEeccCCceeEEEeeeeEEEEe-
Confidence 344444443 55 678888878887664 12223566666667778889999999999
Q ss_pred CCCCCCCCCCC
Q 014821 161 FSDVPNIPEFP 171 (418)
Q Consensus 161 ~~~~p~~p~~~ 171 (418)
-.|+..-++
T Consensus 450 --L~PNT~WLk 458 (520)
T COG3634 450 --LLPNTEWLK 458 (520)
T ss_pred --cccChhHhh
Confidence 457765554
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.041 Score=54.15 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|..|.-+|..|...|.. |+++.+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 34799999999999999999888754 999998764
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.023 Score=55.71 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.-+|..|+..|.. |+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCc
Confidence 389999999999999999988765 999999874
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.044 Score=56.42 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||+|.+|+++|..++..+.. |.++.++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 589999999999999999988765 99999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.031 Score=56.94 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|.-+|..|...|.. |+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK---TCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 4699999999999999999998865 999999864
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.022 Score=53.40 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=29.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|+-+|..|.+.|.. |+++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence 589999999999999999887765 999998763
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.097 Score=54.82 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=24.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC------ceEEEe
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF------HPIVFE 33 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~------~v~iie 33 (418)
++|+|||||..|+-+|..|.+.+. +++++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 689999999999999999988643 556653
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.019 Score=56.78 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=27.1
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 207 TVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 207 ~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|||+|.+|+-+|..+++.+.. |+++.+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~---V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS---VLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc---EEEEecCcc
Confidence 5999999999999999987755 999998764
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.009 Score=58.00 Aligned_cols=41 Identities=37% Similarity=0.541 Sum_probs=37.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
.+|++|||+|.-||.+|.+|++.+.+|+++|++...||.-.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaav 54 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAV 54 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCccee
Confidence 58999999999999999999999999999999977777433
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.07 Score=52.98 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=65.2
Q ss_pred EEEcCCHHHHHHH-HHHH----hCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 7 AIVGAGVSGLLAC-KYLL----LKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 7 vIIG~G~aGl~~a-~~L~----~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+|++.|..|+..+ ..+. +.|.+|++++..+ ... +..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~p----------------------------------psl-pG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLP----------------------------------PSV-PGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCC----------------------------------CCC-chHHHHH
Confidence 5678888898887 4443 3588999998753 111 2236777
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+..++.+. .+..+++|.+++..+ +...+.... ++....+.+|.||+|+|.+
T Consensus 264 aL~~~l~~~Gv--~I~~g~~V~~v~~~~----------------------~~V~~v~~~--~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 264 ALRRAFERLGG--RIMPGDEVLGAEFEG----------------------GRVTAVWTR--NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEeC----------------------CEEEEEEee--CCceEEEECCEEEEeCCCc
Confidence 78888888888 899999999998765 222222221 2334679999999999976
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.037 Score=55.51 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...+|+|||+|.+|+-+|..|...+.. .+.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccC
Confidence 456899999999999999999998865 288888874
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.012 Score=56.56 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.=+|..|++.|.. |+++.|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 699999999999999999999865 999999875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.021 Score=56.26 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|..|.-+|..|...|.. |+++.+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCC
Confidence 35799999999999999999887754 99999875
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.056 Score=53.73 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=29.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|..|+-+|..|...+.. +|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~--~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHL--NVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--CEEEEecCCc
Confidence 799999999999999999887641 3999999764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.12 Score=50.26 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=28.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.-+|..|+.. .. |+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCc
Confidence 699999999999999998776 54 999999874
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.025 Score=50.35 Aligned_cols=35 Identities=29% Similarity=0.238 Sum_probs=30.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||+|.+|.--+..|...|.. |+++.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 4578999999999999999999998876 9998754
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.05 Score=53.55 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhh---cCCCCCeEEEEec
Q 014821 204 KRVTVVGLQKSALDIAMECTTA---NGLENPCTVLYRT 238 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~---~~~~~~V~~~~r~ 238 (418)
.+|+|||+|.+|.-+|..|... |.. |+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~---v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLP---VALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCE---EEEEeCC
Confidence 5799999999999999999887 654 9999995
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.027 Score=60.70 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+++|+|||+|..|+.+|..|+..|.. |+++.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEcccc
Confidence 4689999999999999999999998876 99999754
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.036 Score=54.53 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=30.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS---VTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCc
Confidence 4799999999999999999998765 999999875
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.018 Score=58.48 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=30.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+++|+|||+|.+|+++|..|...|.. |+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 3467999999999999999999888765 99887654
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.068 Score=53.44 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|.-+|..|+..|.. |.++.|..
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCC
Confidence 5799999999999999999988765 99999875
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.13 Score=50.68 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||||..|+|+|.+.+.-|.. .++++.+-
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 34799999999999999999888875 77777653
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.064 Score=53.95 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
....|+|||+|..|.-+|..|+..|.. |.++.+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 346899999999999999999988865 999998753
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.071 Score=52.37 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|.-+|..|...|.. |+++.+...
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR---VALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 4799999999999999999988765 999998764
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.021 Score=53.14 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=30.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+..+|+|||||..|+-+|..+.+.-+. .+|-++....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~-g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGS-GSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCC-CceEEecchh
Confidence 4466899999999999999999886554 5688887654
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.068 Score=48.77 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=29.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|..|+-.|..|...|.. |+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGRE---VTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcE---EEEEEcCC
Confidence 699999999999999999999876 99999875
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.1 Score=51.69 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=35.3
Q ss_pred cchhhhhcc-CcEEEeccC-ceeEec--C--cEEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEE-GSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~-~~v~~~~~~-v~~~~~--~--~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..+++.+.+ .+++++.+. +..+.. + .|++++|++ +.+|+||-|.|..+.
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~-~~a~lvIgADG~~S~ 169 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQA-LTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCE-EEeCEEEEeCCCCCh
Confidence 344555544 568988876 666642 2 367788988 999999999998754
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.027 Score=55.98 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|..|.-+|..|...|.. |+++.+++.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 45799999999999999999988765 999999874
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.12 Score=45.76 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=70.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+-.+|||||-+.+.=|.+|.+++.+|.|+-|++.+ .....
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f---------------------------------------RAs~~ 197 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---------------------------------------RASKI 197 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------hHHHH
Confidence 467899999999999999999999999999997622 11122
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++.+.+. ++ .+.+|+.++++..+. +..-.+.+++-++|....+..+-|..|.|..
T Consensus 198 Mq~ra~~npnI--~v~~nt~~~ea~gd~---------------------~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~ 254 (322)
T KOG0404|consen 198 MQQRAEKNPNI--EVLYNTVAVEALGDG---------------------KLLNGLRIKNVKTGEETDLPVSGLFFAIGHS 254 (322)
T ss_pred HHHHHhcCCCe--EEEechhhhhhccCc---------------------ccccceEEEecccCcccccccceeEEEecCC
Confidence 33333333 45 678888777765543 1223466777777888899999999999954
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.02 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=27.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||.|+.|+.+|..|++.|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999975
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.11 Score=51.42 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|..|.-+|..|+..|.. |+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCC
Confidence 5799999999999999999888765 999999874
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.046 Score=56.37 Aligned_cols=35 Identities=23% Similarity=0.109 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|.-+|..|...|.. |+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 46799999999999999999988765 999999864
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.066 Score=54.91 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=29.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+-+|..|++...++.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 5799999999999999999999888888877754
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.024 Score=48.27 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|||||..|.++|..|+.+|.+|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999964
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.12 Score=51.11 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
++|+|||||..|+-+|..|...|.. |+++.+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 7899999999999999999888765 999998764
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.053 Score=56.08 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=68.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
..-+|||||.-|+.+|..|...|.++.|+.-.+..-. ..-. ..-...|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe-----------------------------rQLD---~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME-----------------------------RQLD---RTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH-----------------------------Hhhh---hHHHHHH
Confidence 3468999999999999999999999999887542110 0001 1223456
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+....+.|+ ++.++.....+.... ..-.+...++ ..+.+|.||.|+| .
T Consensus 194 ~~~le~~Gi--~~~l~~~t~ei~g~~----------------------~~~~vr~~DG-----~~i~ad~VV~a~G---I 241 (793)
T COG1251 194 RRKLEDLGI--KVLLEKNTEEIVGED----------------------KVEGVRFADG-----TEIPADLVVMAVG---I 241 (793)
T ss_pred HHHHHhhcc--eeecccchhhhhcCc----------------------ceeeEeecCC-----CcccceeEEEecc---c
Confidence 777777788 677766555554432 2234566666 5899999999999 4
Q ss_pred CCCC
Q 014821 164 VPNI 167 (418)
Q Consensus 164 ~p~~ 167 (418)
+|+.
T Consensus 242 rPn~ 245 (793)
T COG1251 242 RPND 245 (793)
T ss_pred cccc
Confidence 5664
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.066 Score=54.44 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|.-+|..|...|.. |.++.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCc
Confidence 5799999999999999999887765 999998764
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.19 Score=50.33 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=28.6
Q ss_pred EEEEEcCCCCHHHHHHHHhhhc-CCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTAN-GLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~-~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|+-+|..+++.| .. |.++.+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 3899999999999999999887 54 999998763
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.062 Score=52.35 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=33.5
Q ss_pred hhhhhcc-CcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCC
Q 014821 330 FYDKVEE-GSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 330 ~~~~~~~-~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+ .+++++.+. |..++.+.|.+++|+ +.+|.||+|||.-..
T Consensus 151 l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~--i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 151 LAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD--VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc--EEeCEEEECCCCChh
Confidence 3455444 378888875 777776677777775 679999999997543
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.076 Score=52.30 Aligned_cols=31 Identities=26% Similarity=0.147 Sum_probs=28.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|+|||+|.+|.-+|..|+..|.. |.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 599999999999999999988765 9999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.035 Score=55.04 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=34.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.+||+|+|.|..-..+|..|++.|++|+-+|+++.-||.|..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 3689999999999999999999999999999999999998876
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.07 Score=52.80 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=29.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|+.|.-+|..|+..|.. |.++.+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ---TFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 699999999999999999988865 99999875
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.038 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|..|.++|..|+++|.+|+++|++.
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 666789999999999999999999999999999864
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.03 Score=55.61 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|.+++|+|||.|..|+.+|..|+++|++|+.+|++..
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 7888999999999999999999999999999998764
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.028 Score=44.06 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||..|..-+..|.+.|.+++|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5689999999999999999999999999999996
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.043 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|.-|..+|..|+.+|++|+++|++.
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 556889999999999999999999999999999864
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.15 Score=50.23 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhh--cCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTA--NGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~--~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|+++ +. +|+++.+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~---~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA---RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC---eEEEEeCCC
Confidence 3699999999999999999987 54 499999864
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.31 Score=49.84 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..+++.|.. |.++.+.+.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~~ 95 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMPV 95 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 45799999999999999999888765 999998763
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=50.13 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=50.4
Q ss_pred CCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 71 TDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 71 ~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
..|| ....+.+-|...+++.++ .++++++|.+|+ . +.|.+.+..+. .
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~--~----------------------~~~~v~~~~~~----~ 126 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ--G----------------------GTLRFETPDGQ----S 126 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe--C----------------------CcEEEEECCCc----e
Confidence 4455 577899999999999999 899999999992 2 33777764331 3
Q ss_pred EEEeCEEEEeeccCCCCCCC
Q 014821 148 VHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~ 167 (418)
.+.||+||+|||.. +.|..
T Consensus 127 ~~~a~~vIlAtGG~-s~p~~ 145 (376)
T TIGR03862 127 TIEADAVVLALGGA-SWSQL 145 (376)
T ss_pred EEecCEEEEcCCCc-ccccc
Confidence 69999999999987 34443
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.082 Score=47.47 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||||..|..=+..|...+.. |+++++.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~---VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY---VYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcCC
Confidence 4578999999999999988999898876 9998854
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.049 Score=51.14 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=33.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|...+|+|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 666789999999999999999999999999999864
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.055 Score=45.98 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEee
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA 34 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~ 34 (418)
+.++|+|||||..|..-+..|.+.|.+|+|+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 457899999999999999999999999999965
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.044 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++++|||+|..|.++|..|.+.|.+++++|++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999975
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.047 Score=47.57 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=28.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999964
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.051 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 666789999999999999999999999999999965
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.18 Score=52.11 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|+-+|..|...|.. |+++.|.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 46799999999999999999998865 999998763
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.039 Score=56.25 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~ 38 (418)
.+|.+|||||.||..+|..|.+. ..+|.++|+....
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 58999999999999999999995 5799999998765
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.058 Score=53.77 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..++|+|||+|.+|+-+|..|...|.. ++++-|++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecC
Confidence 368999999999999999999999876 99999975
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.061 Score=47.90 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||..|...+..|.+.|.+|+|+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999985
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.053 Score=54.55 Aligned_cols=36 Identities=36% Similarity=0.595 Sum_probs=33.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.++|+|||+|..|+++|..|++.|++|+++|+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346899999999999999999999999999999964
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.17 Score=52.35 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
....|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 456899999999999999999988765 999998863
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.052 Score=54.27 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||||.+|+-+|..+++.|.. |.++.+.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCcc
Confidence 489999999999999999998865 999998763
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.2 Score=49.79 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=29.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|..|.-+|..|...|.. |+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 699999999999999999988765 999999864
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.067 Score=51.09 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|++++|+|||+|..|...|..|++.|.+|+++.++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 456789999999999999999999999999999853
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.047 Score=53.51 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=28.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|.+|.-+|..|...|.. |+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 699999999999999999888765 99999864
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.19 Score=50.31 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=36.2
Q ss_pred cchhhhhcc-C--cEEEeccC-ceeEe---------cC--cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 328 EKFYDKVEE-G--SIILKKSQ-DFSFC---------ED--GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 328 ~~~~~~~~~-~--~v~~~~~~-v~~~~---------~~--~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
..+.+.+++ + +++++.+. +..++ ++ .|++.+|++ +.+|+||-|-|..+..
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~-i~a~llVgADG~~S~v 185 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQV-LYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCE-EEeeEEEEecCCCChh
Confidence 344555554 3 59998886 66663 12 367788988 9999999999998663
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.14 Score=45.49 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=30.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
.++++|+|||+|..|...+..|...+.. |+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~---V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAH---IVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEcC
Confidence 4689999999999999999999998865 999875
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.074 Score=57.25 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=33.6
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...+++|+|||+|++|.-+|..|...|.. |+++.|+.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCC
Confidence 34589999999999999999999888876 999999874
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.068 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..++|+|||+|..|...|..++..|++|+++|+.+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34689999999999999999999999999999964
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.23 Score=45.89 Aligned_cols=37 Identities=24% Similarity=0.131 Sum_probs=31.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.....|+|||+|.+|+-+|..|+..|.. |.++.+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 3456799999999999999999887765 999998753
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.086 Score=46.83 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||-.|...+..|.+.|.+++|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4679999999999999999999999999999874
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.13 Score=49.17 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+|+|||+|+.|+=+|..|+.+-.. .+|+++.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~-~~Vdi~Ek~P 55 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPN-AHVDIFEKLP 55 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCC-CeeEeeecCC
Confidence 34999999999999999999985221 4599988766
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.23 Score=49.30 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 206 VTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 206 v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
|+|||+|.+|+-+|..+++.|.. |.++.+.+.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~---V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAK---VLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCe---EEEEEeecc
Confidence 89999999999999999998875 999998764
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.12 Score=51.08 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|..|.-+|..|...|.. |+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 5799999999999999999998876 999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.14 Score=50.55 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcC-CCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANG-LENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~-~~~~V~~~~r~~ 239 (418)
...|+|||+|..|.-+|..|+..|. ...+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 4679999999999999999988763 113599999875
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.38 Score=50.54 Aligned_cols=36 Identities=22% Similarity=0.103 Sum_probs=32.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+..+|+|||||..|.-+|..|...|.. |+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 4567899999999999999999998865 99999875
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.081 Score=49.77 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|.|||+|.-|...|..|+..|++|+++|+++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3589999999999999999999999999999975
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.14 Score=42.36 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
+.++++|||+|-+|-+++..|...|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 357899999999999999999999986 99999953
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.47 Score=48.31 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||+|.+|+-+|..+.+.+ . |.++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G-~---V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG-R---VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC-C---EEEEEccC
Confidence 6999999999999999998765 2 89998875
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.098 Score=49.81 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+|.-|.+.|..|+++|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999964
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.22 Score=49.25 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|++|.-+|..|++.|.. |.++.+...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCC
Confidence 4799999999999999999998865 999998764
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.12 Score=43.42 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=28.8
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
|+|+|+|..|...|..|.+.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 799999999999999999999999999996
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.17 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|..|.-+|..|...|.. |+++.+++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 5799999999999999999988765 999999874
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.45 Score=49.10 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..+.+.|.. |.++.+...
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 5799999999999999999887754 999988663
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.097 Score=43.17 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
..+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 79999984
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.093 Score=52.97 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=31.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+|.|||.|.+|+++|+.|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987643
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.099 Score=50.40 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=30.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||.|+.||..+.+|++.|.+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 418 | ||||
| 2xvi_A | 464 | Crystal Structure Of The Mutant Bacterial Flavin Co | 8e-17 | ||
| 2xvf_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 1e-16 | ||
| 2xve_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 1e-16 | ||
| 2xls_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 4e-16 | ||
| 2xlr_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 4e-16 | ||
| 2xlp_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 4e-16 | ||
| 2vq7_A | 461 | Bacterial Flavin-Containing Monooxygenase In Comple | 4e-16 | ||
| 2ylx_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 4e-10 | ||
| 2ylw_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 8e-10 | ||
| 1w4x_A | 542 | Phenylacetone Monooxygenase, A Baeyer-villiger Mono | 8e-10 | ||
| 2ylz_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 8e-10 | ||
| 3ucl_A | 573 | Cyclohexanone-Bound Crystal Structure Of Cyclohexan | 8e-10 | ||
| 3gwd_A | 540 | Closed Crystal Structure Of Cyclohexanone Monooxyge | 1e-09 | ||
| 4aos_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 3e-09 | ||
| 4ap3_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 3e-09 | ||
| 4ap1_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 3e-09 | ||
| 3uov_A | 545 | Crystal Structure Of Otemo (Fad Bound Form 1) Lengt | 9e-09 | ||
| 4a9w_A | 357 | Flavin-Containing Monooxygenase From Stenotrophomon | 4e-06 | ||
| 1vqw_A | 457 | Crystal Structure Of A Protein With Similarity To F | 1e-04 | ||
| 2gv8_A | 447 | Crystal Structure Of Flavin-Containing Monooxygenas | 1e-04 | ||
| 2yg6_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 1e-04 | ||
| 3rha_A | 482 | The Crystal Structure Of Oxidoreductase From Arthro | 4e-04 | ||
| 2yg3_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 5e-04 | ||
| 2yg7_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 5e-04 | ||
| 2yg5_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 5e-04 |
| >pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464 | Back alignment and structure |
|
| >pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461 | Back alignment and structure |
|
| >pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542 | Back alignment and structure |
|
| >pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542 | Back alignment and structure |
|
| >pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542 | Back alignment and structure |
|
| >pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542 | Back alignment and structure |
|
| >pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573 | Back alignment and structure |
|
| >pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540 | Back alignment and structure |
|
| >pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545 | Back alignment and structure |
|
| >pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357 | Back alignment and structure |
|
| >pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457 | Back alignment and structure |
|
| >pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447 | Back alignment and structure |
|
| >pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: P15i-A394c Double Mutant Length = 453 | Back alignment and structure |
|
| >pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter Aurescens Length = 482 | Back alignment and structure |
|
| >pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: Wild Type Enzyme Length = 453 | Back alignment and structure |
|
| >pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant Length = 453 | Back alignment and structure |
|
| >pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c Mutant Length = 453 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 1e-50
Identities = 70/381 (18%), Positives = 112/381 (29%), Gaps = 97/381 (25%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
M+ + ++G G SGL A +L G ++ +A + GGAW + L +P
Sbjct: 1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSI 60
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
+P P S +P +VL Y+ Y + L + +V + G
Sbjct: 61 PGWPMPAS-QGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHFG----------- 106
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
+ V D VI G + + PE+ G E+F
Sbjct: 107 -----------ERLRVVARD-----GRQWLARAVISATGTWGE-AYTPEYQ---GLESFA 146
Query: 181 GKVIHSMDY-SDMDYEAAANLVKGKRVTVVGLQKSALDIAME-CTTANGLENPCTVLYRT 238
G +HS Y + + G RV ++G S I E T A +
Sbjct: 147 GIQLHSAHYSTPAPF-------AGMRVAIIGGGNSGAQILAEVSTVA----ETTWITQHE 195
Query: 239 EHWNIPDYFPWGFPLAYLYLNRF-AELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297
+ D G L R+ A+ +P M+ P+ D
Sbjct: 196 PAFLADDVD--GRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVL---------DA 244
Query: 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVD 357
+ + LA + + DG
Sbjct: 245 RARGVLAAVPPP----------------------ARFSPTGMQW---------ADG---- 269
Query: 358 GQTTPLKTDLVILATGFKGDV 378
T D VI TGF+ +
Sbjct: 270 ---TERAFDAVIWCTGFRPAL 287
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 4e-45
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 56/248 (22%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLL------LKGFHPIVFEARSDIGGAWI----------- 43
M + IAI+GAG SG+ + + + FE ++D GG W
Sbjct: 1 MATR-IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 59
Query: 44 KTVETTM-----LQTPKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKH 95
+ V ++M PK+ +F+DY + + +P + DYI+ +RK+
Sbjct: 60 EPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 119
Query: 96 IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155
I+FN V +E +N + +TV V+D + + D+V+
Sbjct: 120 IRFNTAVRHVE--------------FNEDS------QTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSA 215
C G FS P +PEF G E F G+++H+ D+ D A K K V +VG SA
Sbjct: 160 CCTGHFS-TPYVPEFE---GFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSA 209
Query: 216 LDIAMECT 223
DI +C
Sbjct: 210 EDIGSQCY 217
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 63/284 (22%), Positives = 92/284 (32%), Gaps = 72/284 (25%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVET------------- 48
++IAI+GAG SGL+ K LL + +FE R GG W T
Sbjct: 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 49 ---------------------TMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYA 87
TP +L + D + T FP + + +Y + YA
Sbjct: 67 TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYA 125
Query: 88 SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147
L IK V+ IE + G W V + K S
Sbjct: 126 Q--PLLPFIKLATDVLDIEKKD----------------------GSWVVTYKGTKAGSPI 161
Query: 148 VHQV-DFVILCVGRFSDVPNIPEFPP-KKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKR 205
+ D V +C G + VP IP + +A G V+HS + + L G+
Sbjct: 162 SKDIFDAVSICNGHYE-VPYIPNIKGLDEYAKAVPGSVLHSSLFRE------PELFVGES 214
Query: 206 VTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPW 249
V VVG SA D+ ++P +
Sbjct: 215 VLVVGGASSANDLVRHL--TPVAKHPIYQSLLGGGDIQNESLQQ 256
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-29
Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 58/222 (26%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----------IKTVETTMLQTP 54
++GAGV+G+ + G + EA D+GG W
Sbjct: 12 AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDT----------E 61
Query: 55 KQLYQFS----DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
Y + P + + +F ++L Y+ A D+RKH +FN +V +
Sbjct: 62 SYAYGYFALKGIIPEWE-WSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARY--- 117
Query: 111 SGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEF 170
E + W V +++ EV F+I G S +P+
Sbjct: 118 ---VE--------------NDRLWEVTLDNE-----EVVTCRFLISATGPLS-ASRMPDI 154
Query: 171 PPKKGPEAFHGKVIHSMDYSDMDYEAAANLV--KGKRVTVVG 210
G ++F G+ HS + D E A V GKRV V+G
Sbjct: 155 K---GIDSFKGESFHSSRW-PTDAEGAPKGVDFTGKRVGVIG 192
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-28
Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 62/221 (28%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----------IKTVETTMLQTP 54
+ +VGAG++GL A +G FEA S +GG W +
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDV----------E 73
Query: 55 KQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLS 111
Y +S P + + + ++L Y++ A FDLR+ I+F+ +V
Sbjct: 74 SIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVL---- 129
Query: 112 GEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFP 171
DE+ +WTV + + F+++ G S N P F
Sbjct: 130 --DEEG--------------LRWTVRTDRG-----DEVSARFLVVAAGPLS-NANTPAFD 167
Query: 172 PKKGPEAFHGKVIHSM--DYSDMDYEAAANLVKGKRVTVVG 210
G + F G ++H+ + +D+ GKRV V+G
Sbjct: 168 ---GLDRFTGDIVHTARWPHDGVDF-------TGKRVGVIG 198
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 3e-28
Identities = 56/225 (24%), Positives = 82/225 (36%), Gaps = 70/225 (31%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----------IKTVETTMLQTP 54
+ +VGAG SGL A L G V E D+GG W I
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDI----------E 68
Query: 55 KQLYQFS-------DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107
Y +S ++ W T + ++L YI A FDLR I F+ V F
Sbjct: 69 SIEYCYSFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF 124
Query: 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167
DE + WTV + + ++I+ G+ S VP +
Sbjct: 125 ------DE--------------ATNTWTVDTNHG-----DRIRARYLIMASGQLS-VPQL 158
Query: 168 PEFPPKKGPEAFHGKVIHSM--DYSDMDYEAAANLVKGKRVTVVG 210
P FP G + F G + H+ + +D+ G+RV V+G
Sbjct: 159 PNFP---GLKDFAGNLYHTGNWPHEPVDF-------SGQRVGVIG 193
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 5e-28
Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 68/224 (30%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGGAW-----------IKTVETTMLQT 53
++GAG G+ A L + F+ GG W
Sbjct: 11 AVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDT---------- 60
Query: 54 PKQLYQFS-------DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106
LY+FS + W T + ++L+Y++ FDLR+H KF +V
Sbjct: 61 ESHLYRFSFDRDLLQESTW----KTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSAL 116
Query: 107 FEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166
+ + W V + EV++ +V+ VG S N
Sbjct: 117 Y------LD--------------DENLWEVTTDHG-----EVYRAKYVVNAVGLLS-AIN 150
Query: 167 IPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG 210
P P G + F G+ IH+ + + G+RV V+G
Sbjct: 151 FPNLP---GLDTFEGETIHTAAW-PEGKS-----LAGRRVGVIG 185
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 7e-28
Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 64/276 (23%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
M+ ++AI+GAG +G+ L G ++ + +G ++ ++T TP
Sbjct: 2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNG 61
Query: 61 SDYPWPDSVTTD----------FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGL 110
P ++++ D +Y+Q A+H++L +I N V I +
Sbjct: 62 FGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADD- 118
Query: 111 SGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEF 170
+T+A +TE + D++ + G + + P P
Sbjct: 119 ---------------------AYYTIAT------TTETYHADYIFVATGDY-NFPKKPFK 150
Query: 171 PPKKGPEAFHGKVIHSMDYSD-MDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLE 229
IH + D ++ + V+G +S D A +
Sbjct: 151 Y-----------GIHYSEIEDFDNFN-------KGQYVVIGGNESGFDAAYQLAKNGS-- 190
Query: 230 NPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELL 265
+ T N PD L+ R ++
Sbjct: 191 -DIALYTSTTGLNDPDA-DPSVRLSPYTRQRLGNVI 224
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-27
Identities = 62/394 (15%), Positives = 122/394 (30%), Gaps = 74/394 (18%)
Query: 6 IAIVGAGVSGL-----LACKYLLLKGFHPIVFEARSDIG--------GAWIKTVETTMLQ 52
+ VG G S + L + + + + D + ++ L
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLV 92
Query: 53 T---PKQLYQFSDY--------PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRK 101
+ P Y F +Y + + T +P + DY++ ASHF ++ +
Sbjct: 93 SLRNPTSPYSFVNYLHKHDRLVDFINL-GTFYPCRMEFNDYLRWVASHFQE--QSRYGEE 149
Query: 102 VVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161
V+ IE +G+ E V +A + V +++ G
Sbjct: 150 VLRIEPMLSAGQVEA-----------------LRVISRNA-DGEELVRTTRALVVSPGG- 190
Query: 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221
P IP+ G+V H Y + + + K ++ ++G +SA + ++
Sbjct: 191 --TPRIPQVF---RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFID 245
Query: 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATM 281
+ ++ R D P F + +F +L+ + LL
Sbjct: 246 LNDSYP-SVQADMILRASALKPADDSP--FVNEV-FAPKFTDLIYSRE-HAERERLLREY 300
Query: 282 LSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIIL 341
+ + + I K +P+H+F + I L
Sbjct: 301 HNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFR---------CMTTVERATATAQGIEL 351
Query: 342 KKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFK 375
G+ + D VILATG++
Sbjct: 352 ALRD---------AGSGELSVETYDAVILATGYE 376
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 2e-11
Identities = 58/462 (12%), Positives = 144/462 (31%), Gaps = 128/462 (27%)
Query: 48 TTMLQTPKQLYQ-F------SDYPW-----------PDSVTTDFPD-HNQVLDYIQSYAS 88
T+L +++ Q F +Y + P +T + + +++ + Q +A
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 89 HF--------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140
+ LR+ + R + +G+ G GK VA++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS------------------GKTWVALDV 170
Query: 141 AKNHSTEVHQVDFVI--LCVGRFSDVPNIPE--------FPPKKGPEAFHGKVIHSMDYS 190
++ + ++DF I L + + + E P + H I +
Sbjct: 171 CLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIH 228
Query: 191 DMDYEAAANLVKGKRVTVVGLQKSAL---DIAMECTTANGLENPCTVLYRTEHWNIPDY- 246
+ L+K K + L ++ N C +L T + D+
Sbjct: 229 SIQ-AELRRLLKSKP-----YENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 247 ------------FPWGFPLAYLYLNRFAELLVHKPGE---------GFLLSLLATMLS-- 283
+ + + L +P + LS++A +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 284 PLRW---------AISKFVEADIKK------KHRLAKFGMVPKHS-----FLQELSSCLT 323
W ++ +E+ + + + + P + L + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 324 ITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPL-KTDL---VI----LATGFK 375
+ +K+ + S++ K+ ++ + I ++ + + L ++ + F
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 376 GDVKLKNIFLSQTFQDYLA-----GSPTEKLPLYRSAHIYID 412
D + +L Q F ++ E++ L+R +++D
Sbjct: 461 SDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLD 499
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG----AWIKTVETTMLQTPKQLY 58
+ ++G G +GL + L G+ V EAR+ GG A + ET + Q
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGET-QKC 69
Query: 59 QFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSW 118
FS+ + + T P + LDY + G+E +G ++ ++
Sbjct: 70 TFSEGHFYNVGATRIPQSHITLDYCREL-----------------GVEIQGFGNQNANTF 112
Query: 119 SFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150
+ + G + A D + +E+ +
Sbjct: 113 VNYQSDTSLSGQSVTYRAAKADTFGYMSELLK 144
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 1 MEKKQIAIVGAGVSGLLACKYL--LLKGFHPIVFEARSDIGGAWIKTVE 47
M K++ IVG G++GL A Y + + EA +GG + T
Sbjct: 2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYR 49
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 6e-09
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
K++A++GAGVSGL A L + G + VFEA GG +++V
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVS 56
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 54/239 (22%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
+ + + I+G G +G+ A + + E+ +GG + L K +Y
Sbjct: 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG------QLAALYPEKHIY-- 63
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
D V D + L + Q A ++ + N V +D
Sbjct: 64 -DVAGFPEVPA--IDLVESL-WAQ--AERYNP--DVVLNETVTKYTKL----DD------ 105
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
G + + + V++ G + P + P +
Sbjct: 106 -----------GTFETRTNTGNVYRSRA-----VLIAAGLGAFEPR--KLPQLGNIDHLT 147
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239
G ++ Y+ KGKRV +VG SALD + T+++R
Sbjct: 148 GSSVY---YAVKS----VEDFKGKRVVIVGGGDSALDWTVGLI---KNAASVTLVHRGH 196
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 3e-08
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
+A+VG G+SGL +L +G ++ E+ + +GG + T
Sbjct: 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHA 59
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHP--IVFEARSDIGGAWIKTVET 48
M + + ++G G+SGL A +L P ++ E+ +GG WI++V
Sbjct: 1 MGRT-VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRG 48
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGG 40
+ +IAI+GAG +GL A YL GFH + E +GG
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K + IVGAG++GL A L G V EA GG
Sbjct: 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 50.4 bits (119), Expect = 5e-07
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD-IGG 40
K+I IVGAG++GL+A L G + EA ++ +GG
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 5e-07
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 2 EKKQIAIVGAGVSGLLACKYL------LLKGFHPIVFEARSDIGGAWIKTVE 47
KK + I+G G++GL A Y+ + EA +GG I+TV+
Sbjct: 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVK 54
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38
+ K +AI+G G GL K L G V+E +D
Sbjct: 24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR 61
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ +AIVGAG SGL A L G V EAR +GG
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 1e-06
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
KK++ I+GAG++GL A L G +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+ ++G G GL A + L + GF ++ EAR IGG
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K + +VG G+SG+ A K L G + +V EAR +GG
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG 41
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGGAWIKT 45
+ +I I+GAG +GL A L G+ ++E GG ++
Sbjct: 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG-LSRS 51
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
++ +VGAG+SG+ A K L G ++ EA IGG
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+KK +A+VGAG +GL +G +F+A S+IGG
Sbjct: 372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+ ++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+VG G SGL A + L G ++ E +GG
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGG 38
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 8e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
M+ K+I IVGAG SG + + L KG + + R IGG
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 9e-06
Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 23/210 (10%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG----------------AWIK 44
+ ++ I+G+GVSGL A + L G + EAR +GG +
Sbjct: 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVT 335
Query: 45 TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVG 104
+ + + + V D +FNR +
Sbjct: 336 GLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAV-------PKEKDEMVEQEFNRLLEA 388
Query: 105 IEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDV 164
+ + + GQ + + V + +
Sbjct: 389 TSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKM 448
Query: 165 PNIPEFPPKKGPEAFHGKVIHSMDYSDMDY 194
N+ E + + + ++
Sbjct: 449 VNLKEKIKELHQQYKEASEVKPPRDITAEF 478
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K + IVGAG SG A + L+ G+ + + IGG
Sbjct: 388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG 426
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ +VGAG SGL A + L ++G+ ++ EA D+GG
Sbjct: 390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG 428
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 44/223 (19%), Positives = 73/223 (32%), Gaps = 53/223 (23%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
+ + IVGAG +GL A Y+ ++G + + GG + T L K +Y
Sbjct: 3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG------QLTALYPEKYIY-- 54
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSF 120
D V D + L Q + F+ + +E EG
Sbjct: 55 -DVAGFPKVYA--KDLVKGL-VEQ--VAPFNPV--YSLGERAETLEREG----------- 95
Query: 121 WNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH 180
+ V ++ + VI+ G + P G F
Sbjct: 96 -----------DLFKVTTSQGNAYTAKA-----VIIAAGVGAFEPRR---IGAPGEREFE 136
Query: 181 GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223
G+ ++ Y+ +GKRV +VG SA+D A+
Sbjct: 137 GRGVY---YAVKSKAE----FQGKRVLIVGGGDSAVDWALNLL 172
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 3e-05
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLL-LKGFHPIVFEARSDIGG 40
+ ++GAG +GL A K L + G ++ ++ GG
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGG 40
+IA++GAG + + +L G+ I +FE + +GG
Sbjct: 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+ IVGAG +G + + L G ++ + R IGG
Sbjct: 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
+VGAG+ GLLA +L G IV E + IGG
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
KK+I IVGAG +GL +L V+ R
Sbjct: 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
E K++ ++G SG A + L G V + +
Sbjct: 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 1 MEKK-QIAIVGAGVSGL---LACKYLLLKGFHPIVFEARSDIG--GAWI 43
+ + ++GAG+ GL +A L G V+EA +I GA I
Sbjct: 20 FQGHMKAIVIGAGIGGLSAAVA---LKQSGIDCDVYEAVKEIKPVGAAI 65
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
IVG+G+ G + L +V E R+ IGG
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 418 | |||
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 100.0 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 100.0 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 100.0 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.97 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.97 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.97 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.96 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.96 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.96 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.95 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.95 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.95 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.95 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.95 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.94 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.94 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.94 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.94 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.94 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.94 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.94 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.93 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.93 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.93 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.93 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.93 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.93 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.93 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.92 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.92 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.92 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.92 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.92 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.92 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.92 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.92 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.92 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.92 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.92 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.92 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.91 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.91 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.91 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.91 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.91 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.91 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.91 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.91 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.91 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.91 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.91 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.91 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.9 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.9 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.9 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.9 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.9 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.9 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.9 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.9 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.9 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.9 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.9 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.9 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.9 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.9 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.9 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.9 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.9 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.9 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.89 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.88 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.88 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.88 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.87 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.87 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.86 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.86 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.85 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.84 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.83 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.83 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.82 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.81 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.77 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.77 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.77 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.75 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.37 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.32 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.27 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.24 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.23 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.23 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.19 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.18 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 99.12 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.11 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 99.1 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.1 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 99.09 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 99.09 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 99.09 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.08 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 99.08 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 99.07 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 99.06 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.05 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 99.05 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 99.04 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.04 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 99.04 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 99.03 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 99.02 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 99.02 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.01 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.0 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.0 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.98 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.98 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.97 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.96 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.95 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.95 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.93 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.93 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.92 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.92 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.92 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.91 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.9 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.87 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.86 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.86 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.85 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.84 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.83 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.81 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.79 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.79 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.78 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.76 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.74 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.74 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.71 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.7 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.69 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.69 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.69 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.67 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.67 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.66 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.64 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.64 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.63 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.63 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.61 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.6 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.6 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.6 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.59 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.57 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.57 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.57 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.56 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.54 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.54 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.53 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.5 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.5 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.49 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.48 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.47 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.47 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.46 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.45 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.44 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.44 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.4 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.39 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.39 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.38 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.38 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.37 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.37 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.36 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.36 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.36 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.35 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.35 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.34 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.34 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.33 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 98.33 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.33 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.33 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.32 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.32 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.3 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.3 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.3 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.3 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.3 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.29 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.29 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.29 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.29 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.27 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.27 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.26 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.26 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.26 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.26 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.25 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.23 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.23 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.21 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.19 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.19 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.18 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.18 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 98.17 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 98.17 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.16 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.16 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.14 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.14 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.13 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 98.13 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.12 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.11 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 98.11 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.09 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.09 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.07 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.06 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.05 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.05 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.05 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.05 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.04 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.03 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 98.01 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.0 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.99 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.98 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 97.96 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 97.96 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.95 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.94 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.92 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.91 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.9 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.89 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 97.87 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.86 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.86 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 97.86 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.84 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.84 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.83 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.82 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.79 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.77 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 97.71 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.7 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.66 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.59 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.54 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.52 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.51 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.49 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.47 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.47 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.36 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.36 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.34 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.33 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 97.3 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.3 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.24 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.23 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.23 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.23 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.2 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.2 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.2 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.17 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.09 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.99 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 96.98 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 96.98 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.97 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 96.91 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.87 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 96.79 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.79 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.71 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.69 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 96.69 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 96.66 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 96.66 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 96.64 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.62 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 96.61 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.6 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.6 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.54 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.54 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 96.53 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 96.46 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.39 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 96.36 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.32 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 96.3 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 96.29 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 96.24 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 96.23 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.21 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.17 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 96.16 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.12 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.1 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 96.09 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 96.04 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 96.03 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 96.03 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 96.02 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 95.94 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.94 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 95.93 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.85 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 95.81 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 95.8 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.74 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.73 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 95.68 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 95.66 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 95.63 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.61 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 95.57 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 95.49 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.47 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.41 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 95.33 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.28 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.25 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 95.24 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.13 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 94.94 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 94.84 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.83 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 94.76 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 94.69 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 94.6 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 94.51 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 94.33 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 94.32 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 94.28 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.21 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.14 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.11 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 94.11 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 94.03 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.91 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.85 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.78 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 93.76 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.68 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.62 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.54 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.54 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 93.52 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 93.5 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 93.45 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 93.42 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 93.35 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 93.33 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 93.31 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 93.27 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 93.26 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.09 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.02 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 92.98 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 92.96 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 92.93 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 92.93 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 92.89 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 92.83 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 92.79 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 92.78 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 92.76 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 92.73 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 92.73 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 92.68 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 92.64 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 92.64 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 92.62 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 92.62 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 92.61 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 92.59 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 92.59 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 92.59 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 92.58 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 92.57 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 92.54 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.52 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 92.52 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 92.44 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 92.41 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 92.33 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 92.29 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.27 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.23 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 92.19 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 92.18 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 92.18 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 92.16 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 92.09 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.05 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 91.95 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 91.88 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 91.86 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 91.84 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 91.8 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 91.74 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 91.72 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 91.65 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 91.63 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 91.62 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 91.59 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 91.56 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 91.45 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 91.38 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 91.23 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 91.21 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 91.13 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 91.09 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 91.07 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 90.97 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 90.76 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 90.73 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 90.71 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 90.65 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.62 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 90.59 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.52 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 90.48 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.46 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 90.4 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 90.38 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 90.38 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 90.3 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 90.19 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 90.09 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 90.08 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 90.07 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 90.07 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 89.98 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.95 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 89.95 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 89.93 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 89.92 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 89.86 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 89.82 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 89.8 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 89.79 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 89.78 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 89.75 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 89.7 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 89.7 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 89.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 89.61 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 89.53 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 89.43 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 89.32 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 89.31 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 89.23 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 89.22 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 89.2 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 89.18 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 89.17 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 89.15 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 89.13 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 89.08 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 89.05 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 89.03 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.03 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 89.0 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 88.92 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 88.91 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.82 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 88.77 |
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=338.89 Aligned_cols=369 Identities=21% Similarity=0.352 Sum_probs=270.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCccccccCCCCCC---CCCCCCCCChh
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPWP---DSVTTDFPDHN 77 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~ 77 (418)
..+||+|||||++|+++|..|++.|++++|||+++.+||.|.. +||+..+.++...|.+...+.. ..+...++++.
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ 87 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP 87 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence 3579999999999999999999999999999999999999987 9999999999888877643321 22356788999
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++..|++..++++++.+.++++++|++++..+ ..+.|.|++.++ .++.||+||+|
T Consensus 88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~--------------------~~~~w~V~~~~G-----~~~~ad~lV~A 142 (545)
T 3uox_A 88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVE--------------------NDRLWEVTLDNE-----EVVTCRFLISA 142 (545)
T ss_dssp HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEG--------------------GGTEEEEEETTT-----EEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeC--------------------CCCEEEEEECCC-----CEEEeCEEEEC
Confidence 99999999999999877899999999999866 135799998876 58999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhh-hhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEE
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA-AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~ 236 (418)
||.. +.|.+|+++ |++.|.+..+|+..+..-.... ......+|+|+|||+|.+|+|+|.+|+..+.+ |+++.
T Consensus 143 tG~~-s~p~~p~ip---G~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~---Vtv~~ 215 (545)
T 3uox_A 143 TGPL-SASRMPDIK---GIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKE---LYVFQ 215 (545)
T ss_dssp CCSC-BC---CCCT---TGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSE---EEEEE
T ss_pred cCCC-CCCcCCCCC---CccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCE---EEEEE
Confidence 9987 588999998 9999999999998876520000 00235689999999999999999999988754 99999
Q ss_pred ecCcccccCCCCCCCcchhhhhhHHHH----Hh---hcC-----------CC--------chhHHHHHH-----------
Q 014821 237 RTEHWNIPDYFPWGFPLAYLYLNRFAE----LL---VHK-----------PG--------EGFLLSLLA----------- 279 (418)
Q Consensus 237 r~~~~~~~~~~~~g~~~~~~~~~~~~~----~~---~~~-----------~~--------~~~~~~~~~----------- 279 (418)
|++.|++|... .+++......+.. .. ... +. ...+...+.
T Consensus 216 r~~~~i~p~~~---~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~ 292 (545)
T 3uox_A 216 RTPNWCTPLGN---SPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGF 292 (545)
T ss_dssp SSCCCCEECCC---CBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSB
T ss_pred cCCCccccCCc---CCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhh
Confidence 99999998765 4444333222211 10 000 00 000111110
Q ss_pred -h--hhhHHHHHHHHHHHHHHHhhh--hhcccCCCC-CcccccccccccccccCcchhhhhccCcEEEe---ccCceeEe
Q 014821 280 -T--MLSPLRWAISKFVEADIKKKH--RLAKFGMVP-KHSFLQELSSCLTITVPEKFYDKVEEGSIILK---KSQDFSFC 350 (418)
Q Consensus 280 -~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~v~~~~ 350 (418)
. ........+.+.+...++.+. +.....+.| .++. +|+++++++++++.+++++|+++ ...|.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~-----g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it 367 (545)
T 3uox_A 293 RDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPF-----GAKRVPMETNYYETYNRDNVHLVDIREAPIQEVT 367 (545)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCT-----TSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEE
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCC-----CCCccCCCccHHHHhcCCCEEEEecCCCCceEEc
Confidence 0 012333444555555554443 233456888 4666 89999999999999999999999 56799999
Q ss_pred cCcEEEcCCceeeeccEEEEccCCCCCcchhccc---cch--hhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 351 EDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIF---LSQ--TFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 351 ~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l---~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
+++|+++|| + +++|+||+||||+.......-+ +.. -|.+.. ......|..+ ++++||+|+
T Consensus 368 ~~gv~~~dG-~-~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w----~~~~~~y~g~~~~gfPN~f~ 433 (545)
T 3uox_A 368 PEGIKTADA-A-YDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAW----AEGPSTYLGLQARGFPNFFT 433 (545)
T ss_dssp TTEEEESSC-E-EECSEEEECCCCBSSSCSCTTSEEECGGGCBHHHHT----TTSCCCBTTTBCTTCTTEEE
T ss_pred cCeEEeCCC-e-eecCEEEECCccccccccCCCceEECCCCccHHHhh----ccccceeeccccCCCCcEEE
Confidence 999999999 7 9999999999999753322111 111 112211 2356678888 999999996
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=336.35 Aligned_cols=362 Identities=19% Similarity=0.324 Sum_probs=272.8
Q ss_pred CccEEEEcCCHHHHHHHHHHH-hCCCceEEEeeCCCCCccccc-cCCcceecCCccccccCCCCC---CCCCCCCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLL-LKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPW---PDSVTTDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~-~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (418)
.+||+|||||++|+++|..|+ +.|++++|||+++.+||.|.. .||+..+..|+..+.+...+. ...+...++++.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP 87 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence 479999999999999999999 899999999999999999997 899999999988887763210 012245678889
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++.+|++..++++++...++++++|++++..+ ..+.|.|++.++ .++.||+||+|
T Consensus 88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~--------------------~~~~~~V~~~~G-----~~i~ad~lV~A 142 (540)
T 3gwf_A 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLD--------------------DENLWEVTTDHG-----EVYRAKYVVNA 142 (540)
T ss_dssp HHHHHHHHHHHHTTCGGGEEESCCEEEEEEET--------------------TTTEEEEEETTS-----CEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCcceeEeccEEEEEEEeC--------------------CCCEEEEEEcCC-----CEEEeCEEEEC
Confidence 99999999999999877799999999999876 135799998776 47999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
||.. +.|.+|+++ |++.|.+..+|+..+.. .....+|+|+|||+|.+|+|+|.+|+..+.+ |+++.|
T Consensus 143 tG~~-s~p~~p~ip---G~~~f~g~~~~~~~~~~------~~~~~~krV~VIG~G~sgve~a~~l~~~~~~---Vtv~~r 209 (540)
T 3gwf_A 143 VGLL-SAINFPNLP---GLDTFEGETIHTAAWPE------GKSLAGRRVGVIGTGSTGQQVITSLAPEVEH---LTVFVR 209 (540)
T ss_dssp CCSC-CSBCCCCCT---TGGGCCSEEEEGGGCCS------SCCCTTSEEEEECCSHHHHHHHHHHTTTCSE---EEEEES
T ss_pred Cccc-ccCCCCCCC---CccccCCCEEEeecCCC------ccccccceEEEECCCchHHHHHHHHHhhCCE---EEEEEC
Confidence 9988 589999998 99999999999998876 2346789999999999999999999988654 999999
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHH-------HhhcC-----------C-----C---chhHHHHHHh-----------
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAE-------LLVHK-----------P-----G---EGFLLSLLAT----------- 280 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~-----------~-----~---~~~~~~~~~~----------- 280 (418)
++.|++|... .++.......+.. ..... + . .......+..
T Consensus 210 ~~~~i~p~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~ 286 (540)
T 3gwf_A 210 TPQYSVPVGN---RPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTF 286 (540)
T ss_dssp SCCCEEECCC---CBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSC
T ss_pred CCCccccCcc---CCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhh
Confidence 9999999865 4444433222221 00000 0 0 0001111110
Q ss_pred ----hhhHHHHHHHHHHHHHHHhhh--hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEe---ccCceeEec
Q 014821 281 ----MLSPLRWAISKFVEADIKKKH--RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILK---KSQDFSFCE 351 (418)
Q Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~v~~~~~ 351 (418)
..........+++...++.+. +.....+.|. .. +|+++++++++++.+.+++|+++ ...|.++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~-~~-----g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~ 360 (540)
T 3gwf_A 287 GDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPK-GL-----FAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA 360 (540)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC-SC-----CCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC-CC-----CccccCCCccHHHHhcCCCEEEEeCCCCCccEEec
Confidence 012233444555555444432 2334567776 44 89999999999999999999999 677999999
Q ss_pred CcEEEcCCceeeeccEEEEccCCCCCcchhcccc---ch--hhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 352 DGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFL---SQ--TFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 352 ~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
++|+++||++ +++|+||+||||+++......+. .. -+++.. .+.+..|..+ ++++||+|+
T Consensus 361 ~gv~~~dG~~-~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w----~~~~~~y~g~~v~gfPN~f~ 426 (540)
T 3gwf_A 361 KGVVTEDGVL-HELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHW----DGQPTSYLGVSTANFPNWFM 426 (540)
T ss_dssp SEEEETTCCE-EECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHT----SSSCCCBTTTBCTTCTTEEE
T ss_pred CeEEcCCCCE-EECCEEEECCccCccccCcCcceEECCCCcCHHHhh----ccChhhccccccCCCCceEE
Confidence 9999999999 99999999999998853222111 11 111111 2456788888 999999996
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=336.03 Aligned_cols=363 Identities=21% Similarity=0.322 Sum_probs=271.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCccccccCCCCC---CCCCCCCCCChhH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPW---PDSVTTDFPDHNQ 78 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (418)
.+||+|||||++|+++|..|++.|++++|||+++.+||.|.. .||+..+.+|...|.+...+. ...+...++++.+
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e 100 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE 100 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence 479999999999999999999999999999999999999985 899999999998888764320 1123567889999
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.+|++..++++++.+.++++++|++++..+ ..+.|+|++.++ .++.||+||+||
T Consensus 101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~--------------------~~~~w~V~~~~G-----~~i~ad~lV~At 155 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDE--------------------EGLRWTVRTDRG-----DEVSARFLVVAA 155 (549)
T ss_dssp HHHHHHHHHHHTTCGGGEECSCCEEEEEEET--------------------TTTEEEEEETTC-----CEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCccEEECCEEEEEEEcC--------------------CCCEEEEEECCC-----CEEEeCEEEECc
Confidence 9999999999999877899999999999876 235799998776 479999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|.. +.|.+|+++ |++.|.+.++|+..|... .....+|+|+|||+|.+|+|+|.+|+..+.. |+++.|+
T Consensus 156 G~~-s~p~~p~ip---G~~~f~g~~~~~~~~~~~-----~~~~~~krV~VIG~G~sgve~a~~l~~~~~~---Vtv~~r~ 223 (549)
T 4ap3_A 156 GPL-SNANTPAFD---GLDRFTGDIVHTARWPHD-----GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQ---LFVFQRS 223 (549)
T ss_dssp CSE-EECCCCCCT---TGGGCCSEEEEGGGCCTT-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESS
T ss_pred CCC-CCCCCCCCC---CcccCCCceEEecccccc-----ccccCCCEEEEECCCchHHHHHHHHHhhCCE---EEEEECC
Confidence 977 578899888 999999999999988721 1235789999999999999999999998765 9999999
Q ss_pred CcccccCCCCCCCcchhhhhhHHH-------HHhhc----------------CCC---chhHHHHHH-----------hh
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFA-------ELLVH----------------KPG---EGFLLSLLA-----------TM 281 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~----------------~~~---~~~~~~~~~-----------~~ 281 (418)
+.|++|... .++.......+. ..... .+. .......+. ..
T Consensus 224 ~~~ilp~~~---~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~ 300 (549)
T 4ap3_A 224 ANYSIPAGN---VPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQ 300 (549)
T ss_dssp CCCEEECC-------CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTT
T ss_pred CCccccCcC---CCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhh
Confidence 999998765 344333222221 11000 000 000111110 00
Q ss_pred --hhHHHHHHHHHHHHHHHhhh--hhcccCCCCC-cccccccccccccccCcchhhhhccCcEEEe---ccCceeEecCc
Q 014821 282 --LSPLRWAISKFVEADIKKKH--RLAKFGMVPK-HSFLQELSSCLTITVPEKFYDKVEEGSIILK---KSQDFSFCEDG 353 (418)
Q Consensus 282 --~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~v~~~~~~~ 353 (418)
.....+...+++...++.+. +.....|.|. +.. +|++++++.++++.+.+++|+++ ...|.++++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~-----~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g 375 (549)
T 4ap3_A 301 LTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAI-----GAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG 375 (549)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCB-----TTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCC-----CccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc
Confidence 12334455555555555442 3444567887 666 89999999999999999999999 77899999999
Q ss_pred EEEcCCceeeeccEEEEccCCCCCcchhcccc---ch--hhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 354 IVVDGQTTPLKTDLVILATGFKGDVKLKNIFL---SQ--TFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 354 v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|+++|| + +++|+||+||||+++.....-+. .. -|++.. .+....|..+ ++++||+|+
T Consensus 376 v~~~dG-~-~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~l~~~w----~~~~~~y~g~~~~gfPN~f~ 438 (549)
T 4ap3_A 376 IVTTGA-H-YDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETW----AAGPRTYLGLGIDGFPNFFN 438 (549)
T ss_dssp EEESSC-E-EECSEEEECCCEEESSTTGGGSEEECGGGCBHHHHT----TTSCCCBTTTBCTTCTTEEE
T ss_pred EEeCCC-c-eecCEEEECCcccccccccCceeEECCCCcCHHHhh----ccchhhccccccCCCCcEEE
Confidence 999999 7 99999999999998752221111 11 111111 2356788888 999999996
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=311.62 Aligned_cols=363 Identities=21% Similarity=0.329 Sum_probs=262.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCccccccCCCCC---CCCCCCCCCChhH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPW---PDSVTTDFPDHNQ 78 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (418)
.+||+|||||++|+++|..|++.|++++|||+++.+||.|.. +||+..+..+...+.+...+. ...+...++++.+
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 95 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence 479999999999999999999999999999999999999987 899999988887776653220 0112356788999
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.+|++.+++++++...++++++|++++..+ ..+.|+|++.++ .++.||+||+|+
T Consensus 96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~--------------------~~~~w~V~~~~G-----~~~~ad~vV~At 150 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGITFHTTVTAAAFDE--------------------ATNTWTVDTNHG-----DRIRARYLIMAS 150 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEET--------------------TTTEEEEEETTC-----CEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCceEEcCcEEEEEEEcC--------------------CCCeEEEEECCC-----CEEEeCEEEECc
Confidence 9999999999998765799999999999865 135699988765 479999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|.. +.|.+|+++ |++.+.+.++|+..|..- .....+|+|+|||+|.+|+|+|..|+..+.. |+++.|+
T Consensus 151 G~~-s~p~~p~i~---G~~~f~G~~~hs~~~~~~-----~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~---vtv~~r~ 218 (542)
T 1w4x_A 151 GQL-SVPQLPNFP---GLKDFAGNLYHTGNWPHE-----PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRT 218 (542)
T ss_dssp CSC-CCCCCCCCT---TGGGCCSEEEEGGGCCSS-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESS
T ss_pred CCC-CCCCCCCCC---CcccCCCceEECCCCCCc-----hhccCCCEEEEECCCccHHHHHHHHhhcCce---EEEEEcC
Confidence 998 589999998 998899999999988621 1235789999999999999999999998765 9999999
Q ss_pred CcccccCCCCCCCcchhhhhhHH-------HHHhhcC-----------CC--------chhHHHHHH-----------hh
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRF-------AELLVHK-----------PG--------EGFLLSLLA-----------TM 281 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~-----------~~--------~~~~~~~~~-----------~~ 281 (418)
+.|+.|... .++.......+ ....... |. ..+....+. .+
T Consensus 219 ~~~~~p~~~---~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 295 (542)
T 1w4x_A 219 PHFAVPARN---APLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDI 295 (542)
T ss_dssp CCCEEECCC---CBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTT
T ss_pred CcccccCCC---CCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 998877654 22222211111 1110000 00 001111110 00
Q ss_pred --hhHHHHHHHHHHHHHHHhhh--hhcccCCCC-CcccccccccccccccCcchhhhhccCcEEEe---ccCceeEecCc
Q 014821 282 --LSPLRWAISKFVEADIKKKH--RLAKFGMVP-KHSFLQELSSCLTITVPEKFYDKVEEGSIILK---KSQDFSFCEDG 353 (418)
Q Consensus 282 --~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~v~~~~~~~ 353 (418)
.......+.+++...++.+. +.....|.| .+.. +|+++++++++++.+.+++|+++ ...|.++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~-----~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g 370 (542)
T 1w4x_A 296 LRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPF-----GTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG 370 (542)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCS-----SSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE
T ss_pred hcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCc-----cccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe
Confidence 01123344455555554432 233455777 4544 89999999999999999999998 56699999999
Q ss_pred EEEcCCceeeeccEEEEccCCCCCcchhcccc---ch--hhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 354 IVVDGQTTPLKTDLVILATGFKGDVKLKNIFL---SQ--TFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 354 v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|+++| ++ +++|+||+||||+++..+...+. .. .+.+.. ......|..+ ++++||+|+
T Consensus 371 v~~~d-~~-~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w----~~~~~~y~~~~v~~~Pn~f~ 433 (542)
T 1w4x_A 371 VRTSE-RE-YELDSLVLATGFDALTGALFKIDIRGVGNVALKEKW----AAGPRTYLGLSTAGFPNLFF 433 (542)
T ss_dssp EEESS-CE-EECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHT----TTSCCCBTTTBCTTSTTEEE
T ss_pred EEeCC-eE-EecCEEEEcCCccccccCcCceeeECCCCCCHHHhh----cCchheecccccCCCCceEE
Confidence 99999 77 99999999999998644333221 00 011111 1234567777 999999985
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=292.67 Aligned_cols=284 Identities=26% Similarity=0.407 Sum_probs=221.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHh---CCCc---eEEEeeCCCCCccccc----------------cCCcceecCCcccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLL---KGFH---PIVFEARSDIGGAWIK----------------TVETTMLQTPKQLY 58 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~---~~~~---v~iie~~~~~gg~~~~----------------~~~~~~l~~~~~~~ 58 (418)
|. +||+|||||++|+++|..|++ .|++ ++|||+++.+||.|.. .|+.+..+.+...+
T Consensus 1 M~-~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~ 79 (464)
T 2xve_A 1 MA-TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECL 79 (464)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGT
T ss_pred CC-CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhc
Confidence 44 799999999999999999999 9999 9999999999999986 24445566677777
Q ss_pred ccCCCCCCCC---CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 59 QFSDYPWPDS---VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 59 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
.|.+++++.. +...++++.++.+|++++++++++.+.++++++|++++... ..+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~--------------------~~~~~~ 139 (464)
T 2xve_A 80 EFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNE--------------------DSQTFT 139 (464)
T ss_dssp CBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEET--------------------TTTEEE
T ss_pred ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcC--------------------CCCcEE
Confidence 7777765421 13677889999999999999999844489999999999876 124799
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCH
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSA 215 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa 215 (418)
|++.+..++...++.||+||+|||.+ +.|.+|.++ |.+.|.+.++|+..++.. ....+++|+|||+|.+|
T Consensus 140 V~~~~~~~g~~~~~~~d~VVvAtG~~-s~p~~p~ip---G~~~~~g~~~hs~~~~~~------~~~~~k~VvVVG~G~sg 209 (464)
T 2xve_A 140 VTVQDHTTDTIYSEEFDYVVCCTGHF-STPYVPEFE---GFEKFGGRILHAHDFRDA------LEFKDKTVLLVGSSYSA 209 (464)
T ss_dssp EEEEETTTTEEEEEEESEEEECCCSS-SSBCCCCCB---TTTTCCSEEEEGGGCCCG------GGGTTSEEEEECCSTTH
T ss_pred EEEEEcCCCceEEEEcCEEEECCCCC-CCCccCCCC---CcccCCceEEehhhhCCH------hHcCCCEEEEEcCCCCH
Confidence 99887544555689999999999987 589999998 888888889999988763 34578999999999999
Q ss_pred HHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHH
Q 014821 216 LDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEA 295 (418)
Q Consensus 216 ~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (418)
+|+|..|...+.. |++++|++.. .+..
T Consensus 210 ~eiA~~l~~~g~~---V~li~~~~~~-~~~~------------------------------------------------- 236 (464)
T 2xve_A 210 EDIGSQCYKYGAK---KLISCYRTAP-MGYK------------------------------------------------- 236 (464)
T ss_dssp HHHHHHHHHTTCS---EEEEECSSCC-CCCC-------------------------------------------------
T ss_pred HHHHHHHHHhCCe---EEEEEECCCC-CCCC-------------------------------------------------
Confidence 9999999998765 9999987641 1100
Q ss_pred HHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCC
Q 014821 296 DIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
...+|+++ ..|.++++++|+++||++ +++|.||+|||++
T Consensus 237 ---------------------------------------~~~~V~~~-~~V~~i~~~~V~~~dG~~-i~~D~Vi~atG~~ 275 (464)
T 2xve_A 237 ---------------------------------------WPENWDER-PNLVRVDTENAYFADGSS-EKVDAIILCTGYI 275 (464)
T ss_dssp ---------------------------------------CCTTEEEC-SCEEEECSSEEEETTSCE-EECSEEEECCCBC
T ss_pred ---------------------------------------CCCceEEc-CCeEEEeCCEEEECCCCE-EeCCEEEECCCCC
Confidence 01245665 457788888999999998 9999999999999
Q ss_pred CCcchhccccchhhhhhhcCCCCC-Cc-cceeee-eeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAGSPTE-KL-PLYRSA-HIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~ 416 (418)
++.++++. ...+...++ .+ +++.++ .++.|+||+
T Consensus 276 p~~~~l~~-------~~gl~~~~~~~v~~~~~~~~~t~~p~i~a 312 (464)
T 2xve_A 276 HHFPFLND-------DLRLVTNNRLWPLNLYKGVVWEDNPKFFY 312 (464)
T ss_dssp CCCTTBCT-------TTCCCCCSSSCCSSEETTTEESSSTTEEE
T ss_pred CCCCCcCc-------ccccccCCCcccccccceEecCCCCCEEE
Confidence 99543331 012222222 44 567765 889999996
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=282.81 Aligned_cols=316 Identities=22% Similarity=0.314 Sum_probs=239.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
|+++||+|||||++|+++|..|+++|++++|||+++.+||.|...++...+..+...+.+..++.+.. ...++++.++.
T Consensus 1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (357)
T 4a9w_A 1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPAS-QGPYPARAEVL 79 (357)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCC-SSSSCBHHHHH
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCC-ccCCCCHHHHH
Confidence 78899999999999999999999999999999999999999999999999999998888888777643 56788889999
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-EEEecCCCCceeEEEeCEEEEeec
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+|+.++++++++ .++++++|++++..+ +.|. |.+.++ ++.||+||+|||
T Consensus 80 ~~l~~~~~~~~~--~~~~~~~v~~i~~~~----------------------~~~~~v~~~~g------~~~~d~vV~AtG 129 (357)
T 4a9w_A 80 AYLAQYEQKYAL--PVLRPIRVQRVSHFG----------------------ERLRVVARDGR------QWLARAVISATG 129 (357)
T ss_dssp HHHHHHHHHTTC--CEECSCCEEEEEEET----------------------TEEEEEETTSC------EEEEEEEEECCC
T ss_pred HHHHHHHHHcCC--EEEcCCEEEEEEECC----------------------CcEEEEEeCCC------EEEeCEEEECCC
Confidence 999999999999 799999999999876 5677 765443 799999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.. +.|.+|.++ |.+.+.+..+|+..+... ....+++|+|||+|.+|+|+|..|...+ +|++++|+.
T Consensus 130 ~~-~~~~~~~~~---g~~~~~~~~~~~~~~~~~------~~~~~~~v~VvG~G~~g~e~a~~l~~~~----~v~~v~~~~ 195 (357)
T 4a9w_A 130 TW-GEAYTPEYQ---GLESFAGIQLHSAHYSTP------APFAGMRVAIIGGGNSGAQILAEVSTVA----ETTWITQHE 195 (357)
T ss_dssp SG-GGBCCCCCT---TGGGCCSEEEEGGGCCCS------GGGTTSEEEEECCSHHHHHHHHHHTTTS----EEEEECSSC
T ss_pred CC-CCCCCCCCC---CccccCCcEEEeccCCCh------hhcCCCEEEEECCCcCHHHHHHHHHhhC----CEEEEECCC
Confidence 87 578888888 888888889998888763 3457899999999999999999998875 399999986
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
.++.|... .+..+......+ +... ....+.+... .
T Consensus 196 ~~~~~~~~-~~~~~~~~~~~~------------------------------------~~~~---~~~~~~~~~~-----~ 230 (357)
T 4a9w_A 196 PAFLADDV-DGRVLFERATER------------------------------------WKAQ---QEGREPDLPP-----G 230 (357)
T ss_dssp CCBCCTTC-CTHHHHTC---------------------------------------------------------------
T ss_pred Ceecchhh-cCccHHHHHHHH------------------------------------Hhcc---ccccCCCccc-----c
Confidence 55666432 000000000000 0000 0000000000 0
Q ss_pred cccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCC
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTE 399 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~ 399 (418)
....+.+.+.+.+.++.+.+... ..+.+++.+++.+++|++ +++|.||+|||++++.+ ++....+.+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~g~i~~~-~~v~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~--------~l~~~gl~~~~G 300 (357)
T 4a9w_A 231 GFGDIVMVPPVLDARARGVLAAV-PPPARFSPTGMQWADGTE-RAFDAVIWCTGFRPALS--------HLKGLDLVTPQG 300 (357)
T ss_dssp ---CBCCCHHHHHHHHTTCCCEE-CCCSEEETTEEECTTSCE-EECSEEEECCCBCCCCG--------GGTTTTCBCTTS
T ss_pred cccCcccChhHHHHHhcCceEEe-cCcceEeCCeeEECCCCE-ecCCEEEECCCcCCCCc--------ccCcccccCCCC
Confidence 11123344556667777765433 347788899999999999 99999999999999954 444444446678
Q ss_pred Cccceee--eeeccCcccc
Q 014821 400 KLPLYRS--AHIYIDTLTY 416 (418)
Q Consensus 400 ~~~~~~~--~~~~~~~~~~ 416 (418)
.+.++.. +.++.||||.
T Consensus 301 ~i~vd~~~l~~t~~~~vya 319 (357)
T 4a9w_A 301 QVEVDGSGLRALAVPSVWL 319 (357)
T ss_dssp CBCBCTTSCBBSSCTTEEE
T ss_pred CccccCCcccCCCCCCeEE
Confidence 8999888 6899999996
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=283.70 Aligned_cols=369 Identities=16% Similarity=0.169 Sum_probs=221.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--------------CceEEEeeCCCCCccccc--cCCcceecCC-----------c
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--------------FHPIVFEARSDIGGAWIK--TVETTMLQTP-----------K 55 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--------------~~v~iie~~~~~gg~~~~--~~~~~~l~~~-----------~ 55 (418)
.+||+|||+|++||++|++|.+.+ ...+.+|+.+.++ |+. .+|+..++++ .
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P~ 116 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDPR 116 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCCCCccccccchhhhccccCCC
Confidence 479999999999999999998743 3567889887776 776 6888888764 2
Q ss_pred cccccCCC--------CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCC
Q 014821 56 QLYQFSDY--------PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQP 127 (418)
Q Consensus 56 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (418)
..|+|..+ ++. .+...||++.++.+||++++++++. .++|+++|+++++.. +.. .
T Consensus 117 s~~sf~~yl~~~~rl~~f~-~~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~--~~~------------~ 179 (501)
T 4b63_A 117 SSFTFLNYLHQKGRLIHFT-NLSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGK--SDP------------S 179 (501)
T ss_dssp CTTSHHHHHHHHTCHHHHH-TTCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEEC--SST------------T
T ss_pred CccchHHHHHHhCCccCCc-cccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeecccc--ccc------------c
Confidence 22332211 111 1257899999999999999999886 899999999999866 100 0
Q ss_pred CCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEE
Q 014821 128 FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVT 207 (418)
Q Consensus 128 ~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (418)
....+.|+|++.++.++...++.|++||+||| ..|.+|+. ..+.+.++|++.|....+.......++|+|+
T Consensus 180 ~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG---~~P~iP~~------~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~ 250 (501)
T 4b63_A 180 SSVVDFFTVRSRNVETGEISARRTRKVVIAIG---GTAKMPSG------LPQDPRIIHSSKYCTTLPALLKDKSKPYNIA 250 (501)
T ss_dssp SSCBCEEEEEEEETTTCCEEEEEEEEEEECCC---CEECCCTT------SCCCTTEEEGGGHHHHHHHHSCCTTSCCEEE
T ss_pred ccccceEEEEEecCCCceEEEEEeCEEEECcC---CCCCCCCC------CCCCcceeeccccccchhhccccccCCcEEE
Confidence 00124699999998888889999999999999 45777743 3456789999998764433334567899999
Q ss_pred EEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhh-hHHHHHhhcCCCchhHHHHHH---hhhh
Q 014821 208 VVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYL-NRFAELLVHKPGEGFLLSLLA---TMLS 283 (418)
Q Consensus 208 VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~ 283 (418)
|||+|.||+|++.+|+..... .+|++++|++.+..... .|+...++ ....+.+...|.......... ....
T Consensus 251 VVG~G~SA~ei~~~L~~~~~~-~~v~~~~R~~~~~p~~~----s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~ 325 (501)
T 4b63_A 251 VLGSGQSAAEIFHDLQKRYPN-SRTTLIMRDSAMRPSDD----SPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYS 325 (501)
T ss_dssp EECCSHHHHHHHHHHHHHSTT-CEEEEECSSSSCCBCCC----CTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSS
T ss_pred EECCcHHHHHHHHHHHhcCCC-ceEEEEeCCCccccccc----cccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Confidence 999999999999999876433 46999999987654433 23333222 233344444443222111111 1111
Q ss_pred HH-HHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCcee
Q 014821 284 PL-RWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTP 362 (418)
Q Consensus 284 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~ 362 (418)
.+ ...+.......+++...... ...+..+.. ..+ ... ........+++++... +.+++.+++.+++|++
T Consensus 326 ~v~~~li~~i~~~~y~~~~~~~~-~~~~~~~l~---~~~--~v~--~~~~~~~~~~~~v~~~-~~~~~~~~v~~~dg~~- 395 (501)
T 4b63_A 326 VVRLELIEEIYNDMYLQRVKNPD-ETQWQHRIL---PER--KIT--RVEHHGPQSRMRIHLK-SSKPESEGAANDVKET- 395 (501)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSC-GGGCSSEEE---CSE--EEE--EEECCSSSSCEEEEEE-ESCC--------CCCE-
T ss_pred ccCHHHHHHHHHHHHhhccCCCc-ccccceeec---CCc--cee--eeeecCCCCeEEEEee-eeEEeCCeeEeCCCeE-
Confidence 11 11222222222222211100 000000000 000 000 0011223455555432 3466778899999999
Q ss_pred eeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeee-e-------eccCcccccC
Q 014821 363 LKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-H-------IYIDTLTYQE 418 (418)
Q Consensus 363 ~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~ 418 (418)
+++|+||+||||+++.. ++| .+.++ .+..+..+++.+.+.. + ..-++||+|.
T Consensus 396 ~~~D~VI~ATGy~~~~p--~~L-~~~~~-~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg 455 (501)
T 4b63_A 396 LEVDALMVATGYNRNAH--ERL-LSKVQ-HLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQG 455 (501)
T ss_dssp EEESEEEECCCEECCTH--HHH-TGGGG-GGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECS
T ss_pred EECCEEEECcCCCCCCc--chh-cchhh-hcCcCcCCCeeeCCCcEEeecCCccCCCceEEecC
Confidence 99999999999998842 111 11122 3444666777665543 2 2346788873
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=275.41 Aligned_cols=280 Identities=28% Similarity=0.402 Sum_probs=209.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccC-Cc------------------------------
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTV-ET------------------------------ 48 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~-~~------------------------------ 48 (418)
..+||+|||||++|+++|..|++.|. +|+|||+++.+||.|.... ..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 46899999999999999999999999 9999999999999998731 11
Q ss_pred ---ceecCCccccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCC
Q 014821 49 ---TMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125 (418)
Q Consensus 49 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 125 (418)
+..+.+...+.|.+++++.. ...|+++.++.+|+++++++++. .++++++|++++...
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~--~i~~~t~V~~v~~~~---------------- 145 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKKD---------------- 145 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEET----------------
T ss_pred hhhhccCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhhC--eEEeCCEEEEEEeCC----------------
Confidence 11222334455666666643 46788899999999999998866 789999999998766
Q ss_pred CCCCCCCceEEEEecCCCCc-eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCC----CceEEeccCCCCchhhhhhhh
Q 014821 126 QPFGSRGKWTVAVEDAKNHS-TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAF----HGKVIHSMDYSDMDYEAAANL 200 (418)
Q Consensus 126 ~~~~~~~~~~v~~~~~~~~~-~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~ 200 (418)
+.|.|++.+..+|. ..++.||+||+|||.+ +.|.+|.++ |.+.+ .+.++|+..++.. ..
T Consensus 146 ------~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~-s~p~~p~i~---G~~~~~~~~~g~v~~~~~~~~~------~~ 209 (447)
T 2gv8_A 146 ------GSWVVTYKGTKAGSPISKDIFDAVSICNGHY-EVPYIPNIK---GLDEYAKAVPGSVLHSSLFREP------EL 209 (447)
T ss_dssp ------TEEEEEEEESSTTCCEEEEEESEEEECCCSS-SSBCBCCCB---THHHHHHHSTTSEEEGGGCCCG------GG
T ss_pred ------CeEEEEEeecCCCCeeEEEEeCEEEECCCCC-CCCCCCCCC---ChhhhhccCCccEEEecccCCh------hh
Confidence 56999887632233 3479999999999998 588899888 87653 4678999888763 33
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHh
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLAT 280 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (418)
..+++|+|||+|.+|+|+|..|...+. ++|++++|++.+
T Consensus 210 ~~~k~VvVvG~G~sg~e~A~~l~~~~~--~~V~l~~r~~~~--------------------------------------- 248 (447)
T 2gv8_A 210 FVGESVLVVGGASSANDLVRHLTPVAK--HPIYQSLLGGGD--------------------------------------- 248 (447)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTSC--SSEEEECTTCCS---------------------------------------
T ss_pred cCCCEEEEEccCcCHHHHHHHHHHHhC--CcEEEEeCCCCc---------------------------------------
Confidence 578999999999999999999988764 139999987642
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEe--cCcEEEcC
Q 014821 281 MLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFC--EDGIVVDG 358 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~--~~~v~~~~ 358 (418)
++..+|.+. ..|.++. +.+|+++|
T Consensus 249 -----------------------------------------------------l~~~~i~~~-~~v~~~~~~~~~v~~~d 274 (447)
T 2gv8_A 249 -----------------------------------------------------IQNESLQQV-PEITKFDPTTREIYLKG 274 (447)
T ss_dssp -----------------------------------------------------CBCSSEEEE-CCEEEEETTTTEEEETT
T ss_pred -----------------------------------------------------CCCCCeEEe-cCeEEEecCCCEEEECC
Confidence 112234432 2366673 45799999
Q ss_pred CceeeeccEEEEccCCCCCcch-----hccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 359 QTTPLKTDLVILATGFKGDVKL-----KNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 359 g~~~~~~D~Vi~atG~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|++.+++|.||+|||++++.++ ++.+ ...+..+.....++|.++ .++.|+||+
T Consensus 275 G~~~~~~D~vi~atG~~~~~~~l~~~~l~~~-----~~~i~~~~~~~~~~~~~v~~~~~p~l~~ 333 (447)
T 2gv8_A 275 GKVLSNIDRVIYCTGYLYSVPFPSLAKLKSP-----ETKLIDDGSHVHNVYQHIFYIPDPTLAF 333 (447)
T ss_dssp TEEECCCSEEEECCCBCCCCCCHHHHSCCST-----TTCCCSSSSSCCSEETTTEETTCTTEEE
T ss_pred CCEeccCCEEEECCCCCcCCCCCcccccccc-----cCceecCCCcccccccccccCCCCcEEE
Confidence 9864799999999999999655 3322 112222223334567776 678899886
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=240.96 Aligned_cols=285 Identities=20% Similarity=0.272 Sum_probs=193.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccccCCcceecCCccc---cccCCCCCCCC-C------
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTVETTMLQTPKQL---YQFSDYPWPDS-V------ 69 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~~~~~~~l~~~~~~---~~~~~~~~~~~-~------ 69 (418)
|+++||+|||||++|+++|..|++.|. +|+|||+++ +|+.|.......++..+... +.+.++..... .
T Consensus 2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (369)
T 3d1c_A 2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF 80 (369)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence 778999999999999999999999999 999999987 99998774433333333221 11111111100 0
Q ss_pred CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEE
Q 014821 70 TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH 149 (418)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 149 (418)
...++.+.++..|+.++++++++ .++++++|++++..+ +.|.|.+.++ ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g------~~ 130 (369)
T 3d1c_A 81 NEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADD----------------------AYYTIATTTE------TY 130 (369)
T ss_dssp CCSSCBHHHHHHHHHHHHHHTTC--EEECSCCEEEEEECS----------------------SSEEEEESSC------CE
T ss_pred cccCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEECC----------------------CeEEEEeCCC------EE
Confidence 13456778899999999999998 788999999999865 4588876543 58
Q ss_pred EeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCC
Q 014821 150 QVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLE 229 (418)
Q Consensus 150 ~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~ 229 (418)
.||+||+|||.. ..|.+| + +.++|+..+... ...++++|+|||+|.+|+|+|..|...+..
T Consensus 131 ~~d~vVlAtG~~-~~p~ip------~-----~~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~- 191 (369)
T 3d1c_A 131 HADYIFVATGDY-NFPKKP------F-----KYGIHYSEIEDF------DNFNKGQYVVIGGNESGFDAAYQLAKNGSD- 191 (369)
T ss_dssp EEEEEEECCCST-TSBCCC------S-----SSCEEGGGCSCG------GGSCSSEEEEECCSHHHHHHHHHHHHTTCE-
T ss_pred EeCEEEECCCCC-CccCCC------C-----CceechhhcCCh------hhcCCCEEEEECCCcCHHHHHHHHHhcCCe-
Confidence 999999999987 344444 4 246777766552 234678999999999999999999988754
Q ss_pred CCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 014821 230 NPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMV 309 (418)
Q Consensus 230 ~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (418)
|+++.|++.+..+... ....+. .
T Consensus 192 --V~lv~~~~~~~~~~~d-~~~~~~----~-------------------------------------------------- 214 (369)
T 3d1c_A 192 --IALYTSTTGLNDPDAD-PSVRLS----P-------------------------------------------------- 214 (369)
T ss_dssp --EEEECC-----------CTTSCC----H--------------------------------------------------
T ss_pred --EEEEecCCCCCCCCCC-CCccCC----H--------------------------------------------------
Confidence 9999998865433211 000000 0
Q ss_pred CCcccccccccccccccCcchhhhhccCc-EEEeccC-ceeE--ecC--cEEEcCCceeee-ccEEEEccCCCCCcchhc
Q 014821 310 PKHSFLQELSSCLTITVPEKFYDKVEEGS-IILKKSQ-DFSF--CED--GIVVDGQTTPLK-TDLVILATGFKGDVKLKN 382 (418)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~-v~~~--~~~--~v~~~~g~~~~~-~D~Vi~atG~~~~~~~~~ 382 (418)
...+.+.+.+++.+ |+++.+. +..+ +++ .+.+.+|++ +. +|.||+|||++++.+
T Consensus 215 ---------------~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~-~~~~d~vi~a~G~~~~~~--- 275 (369)
T 3d1c_A 215 ---------------YTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQS-VHTPHEPILATGFDATKN--- 275 (369)
T ss_dssp ---------------HHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCC-EEESSCCEECCCBCGGGS---
T ss_pred ---------------HHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeE-eccCCceEEeeccCCccc---
Confidence 00112233445564 8888875 7777 344 367889987 64 699999999999842
Q ss_pred cccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 383 IFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
++.+.++.+.++.+.++... .++.||||.
T Consensus 276 -----~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a 305 (369)
T 3d1c_A 276 -----PIVQQLFVTTNQDIKLTTHDESTRYPNIFM 305 (369)
T ss_dssp -----HHHHHHSCCTTSCCCBCTTSBBSSSTTEEE
T ss_pred -----hhhhhhccCCCCCEEechhhcccCCCCeEE
Confidence 23333343456668887765 888999996
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=244.05 Aligned_cols=266 Identities=17% Similarity=0.258 Sum_probs=199.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++||+|||||++|+++|..|++.|++|+|||+++.+||.|...+|...+.. +.. .......++..+
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~------~~~--------~~~~~~~~~~~~ 72 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYD------VAG--------FPKIRAQELINN 72 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECC------STT--------CSSEEHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEec------cCC--------CCCCCHHHHHHH
Confidence 479999999999999999999999999999999999999987666554321 111 111246789999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++++. .++++++|++++... ++.|.|.+.++ ++.||+||+|||..+
T Consensus 73 ~~~~~~~~~~--~~~~~~~v~~i~~~~---------------------~~~~~v~~~~g------~~~~d~vVlAtG~~~ 123 (332)
T 3lzw_A 73 LKEQMAKFDQ--TICLEQAVESVEKQA---------------------DGVFKLVTNEE------THYSKTVIITAGNGA 123 (332)
T ss_dssp HHHHHTTSCC--EEECSCCEEEEEECT---------------------TSCEEEEESSE------EEEEEEEEECCTTSC
T ss_pred HHHHHHHhCC--cEEccCEEEEEEECC---------------------CCcEEEEECCC------EEEeCEEEECCCCCc
Confidence 9999999988 889999999999876 34688888765 499999999999753
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
..|..|+++ |.+.+.+..+|. .+... ...++++|+|||+|.+|+|+|..|...+.. |++++|.+.+
T Consensus 124 ~~p~~~~~~---g~~~~~g~~~~~-~~~~~------~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~---v~~~~~~~~~- 189 (332)
T 3lzw_A 124 FKPRKLELE---NAEQYEGKNLHY-FVDDL------QKFAGRRVAILGGGDSAVDWALMLEPIAKE---VSIIHRRDKF- 189 (332)
T ss_dssp CEECCCCCT---TGGGGBTTTEES-SCSCG------GGGBTCEEEEECSSHHHHHHHHHHTTTBSE---EEEECSSSSC-
T ss_pred CCCCCCCCC---ChhhccCceEEE-ecCCH------HHcCCCEEEEECCCHhHHHHHHHHHhhCCe---EEEEEecCcC-
Confidence 478888888 887766666776 44442 334689999999999999999999888754 9999988752
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
.+.
T Consensus 190 ~~~----------------------------------------------------------------------------- 192 (332)
T 3lzw_A 190 RAH----------------------------------------------------------------------------- 192 (332)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred ccccCcchhhhhccCcEEEeccC-ceeEecCc----EEEcC-----CceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVDG-----QTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~----v~~~~-----g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
+...+.+++.+|+++.+. +..+..+. |.+++ +++ +++|.||+|+|++++..+++.+...
T Consensus 193 -----~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G~~p~~~~~~~~~~~----- 261 (332)
T 3lzw_A 193 -----EHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEI-LEIDDLIVNYGFVSSLGPIKNWGLD----- 261 (332)
T ss_dssp -----HHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEE-EECSEEEECCCEECCCGGGGGSSCC-----
T ss_pred -----HHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEE-EECCEEEEeeccCCCchHHhhcCcc-----
Confidence 000123345567787765 77776543 77765 345 8999999999999986544433322
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..++.+.++..+.++.||||.
T Consensus 262 ---~~~g~i~vd~~~~t~~~~vya 282 (332)
T 3lzw_A 262 ---IEKNSIVVKSTMETNIEGFFA 282 (332)
T ss_dssp ---EETTEEECCTTSBCSSTTEEE
T ss_pred ---ccCCeEEeCCCCceecCCEEE
Confidence 335667777666778999985
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=243.71 Aligned_cols=271 Identities=18% Similarity=0.219 Sum_probs=194.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+++||+|||||++|+++|..|++.|++++|||+++.+||.|...+|...+.. +..+ ......++..
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~------~~~~--------~~~~~~~~~~ 69 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYD------VAGF--------PKVYAKDLVK 69 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECC------STTC--------SSEEHHHHHH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeec------cCCC--------CCCCHHHHHH
Confidence 4689999999999999999999999999999999999999877655432211 1100 1124567888
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++.+.+++++. .++++++|..++... +.|.|.+.++ .++.||+||+|||..
T Consensus 70 ~l~~~~~~~~~--~~~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 70 GLVEQVAPFNP--VYSLGERAETLEREG----------------------DLFKVTTSQG-----NAYTAKAVIIAAGVG 120 (335)
T ss_dssp HHHHHHGGGCC--EEEESCCEEEEEEET----------------------TEEEEEETTS-----CEEEEEEEEECCTTS
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEECC----------------------CEEEEEECCC-----CEEEeCEEEECCCCC
Confidence 99998888887 788899999998876 4577877655 479999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
+..|..|+++ |.+.+.+..++.. +.. .....+++|+|||+|.+|+|+|..|...+.. |+++.|++.+
T Consensus 121 ~~~p~~~~i~---g~~~~~~~~~~~~-~~~------~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~---V~~v~~~~~~ 187 (335)
T 2zbw_A 121 AFEPRRIGAP---GEREFEGRGVYYA-VKS------KAEFQGKRVLIVGGGDSAVDWALNLLDTARR---ITLIHRRPQF 187 (335)
T ss_dssp EEEECCCCCT---TTTTTBTTTEESS-CSC------GGGGTTCEEEEECSSHHHHHHHHHTTTTSSE---EEEECSSSSC
T ss_pred CCCCCCCCCC---ChhhccCcEEEEe-cCc------hhhcCCCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEcCCcc
Confidence 3367777777 7665544333322 222 1234689999999999999999999887654 9999998753
Q ss_pred cccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccc
Q 014821 242 NIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSC 321 (418)
Q Consensus 242 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (418)
. +.. ..
T Consensus 188 ~-~~~-------------~~------------------------------------------------------------ 193 (335)
T 2zbw_A 188 R-AHE-------------AS------------------------------------------------------------ 193 (335)
T ss_dssp C-SCH-------------HH------------------------------------------------------------
T ss_pred C-ccH-------------HH------------------------------------------------------------
Confidence 1 100 00
Q ss_pred cccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEc---CC--ceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 322 LTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVD---GQ--TTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~---~g--~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
.+.+.+.+++.+|+++.+. +.++..+ +|.++ +| ++ +++|.||+|||++++.++.+.+...
T Consensus 194 -----~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~~~~l~~~~~~---- 263 (335)
T 2zbw_A 194 -----VKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELA-LEVDAVLILAGYITKLGPLANWGLA---- 263 (335)
T ss_dssp -----HHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEE-EECSEEEECCCEEEECGGGGGSCCC----
T ss_pred -----HHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEE-EecCEEEEeecCCCCchHhhhccee----
Confidence 0112234566678888874 7777654 47776 77 45 8999999999999986544332222
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
...+.+.++..+.++.||||.
T Consensus 264 ----~~~g~i~vd~~~~t~~~~vya 284 (335)
T 2zbw_A 264 ----LEKNKIKVDTTMATSIPGVYA 284 (335)
T ss_dssp ----EETTEEECCTTCBCSSTTEEE
T ss_pred ----ccCCeeeeCCCCCCCCCCEEE
Confidence 224567777666778999986
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=240.92 Aligned_cols=273 Identities=16% Similarity=0.181 Sum_probs=195.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
|+++||+|||||++|+++|..|++.|++++|||+.+.+||.|...+|...+. .+.. .......++.
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~------~~~~--------~~~~~~~~~~ 77 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIY------DVAG--------FPEVPAIDLV 77 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEEC------CSTT--------CSSEEHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccc------cCCC--------CCCCCHHHHH
Confidence 3468999999999999999999999999999999999999987655543221 1110 0112456888
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+++.+.++++++ .+.++++|+.++... ++.|.|.+.++ .++.||+||+|+|.
T Consensus 78 ~~l~~~~~~~~~--~~~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~~~~~~li~AtG~ 129 (360)
T 3ab1_A 78 ESLWAQAERYNP--DVVLNETVTKYTKLD---------------------DGTFETRTNTG-----NVYRSRAVLIAAGL 129 (360)
T ss_dssp HHHHHHHHTTCC--EEECSCCEEEEEECT---------------------TSCEEEEETTS-----CEEEEEEEEECCTT
T ss_pred HHHHHHHHHhCC--EEEcCCEEEEEEECC---------------------CceEEEEECCC-----cEEEeeEEEEccCC
Confidence 899999888887 788899999999865 23688887665 57999999999998
Q ss_pred CCCCCCCCCCCCCCC-CCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 161 FSDVPNIPEFPPKKG-PEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+..|..|+++ | .+.+.+..++.. +.. .....+++|+|||+|.+|+|+|..|...+. +|++++|++
T Consensus 130 ~~~~~~~~~i~---g~~~~~~~~~v~~~-~~~------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~---~V~lv~~~~ 196 (360)
T 3ab1_A 130 GAFEPRKLPQL---GNIDHLTGSSVYYA-VKS------VEDFKGKRVVIVGGGDSALDWTVGLIKNAA---SVTLVHRGH 196 (360)
T ss_dssp CSCCBCCCGGG---CCCTTTBTTTEESS-CSC------GGGGTTCEEEEECSSHHHHHHHHHTTTTSS---EEEEECSSS
T ss_pred CcCCCCCCCCC---CchhhCcCceEEEe-cCC------HHHcCCCcEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCC
Confidence 75578888777 7 655544334332 222 123468999999999999999999988765 499999887
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
.+. +...
T Consensus 197 ~~~-~~~~------------------------------------------------------------------------ 203 (360)
T 3ab1_A 197 EFQ-GHGK------------------------------------------------------------------------ 203 (360)
T ss_dssp SCS-SCSH------------------------------------------------------------------------
T ss_pred CCC-CCHH------------------------------------------------------------------------
Confidence 421 1100
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEc--CC--ceeeeccEEEEccCCCCCcchhccccchhh
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVD--GQ--TTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~--~g--~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~ 389 (418)
..+.+.+.+++.+|+++.+. +..+..+ +|.+. +| ++ +++|.||+|||++++.++++.+...
T Consensus 204 ------~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~-i~~D~vi~a~G~~p~~~~l~~~~~~-- 274 (360)
T 3ab1_A 204 ------TAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWT-VEADRLLILIGFKSNLGPLARWDLE-- 274 (360)
T ss_dssp ------HHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEE-EECSEEEECCCBCCSCGGGGGSSCC--
T ss_pred ------HHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEE-EeCCEEEECCCCCCCHHHHHhhccc--
Confidence 00112234556678888884 7777643 46664 77 45 8999999999999996544433222
Q ss_pred hhhhcCCCCCCccceeeeeeccCcccc
Q 014821 390 QDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..++.+.++..+.++.||||.
T Consensus 275 ------~~~g~i~vd~~~~t~~~~vya 295 (360)
T 3ab1_A 275 ------LYENALVVDSHMKTSVDGLYA 295 (360)
T ss_dssp ------EETTEEECCTTSBCSSTTEEE
T ss_pred ------cccCeeeecCCCcCCCCCEEE
Confidence 224567777666678999986
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=229.09 Aligned_cols=259 Identities=10% Similarity=0.096 Sum_probs=185.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++||+|||||++|+++|..|++.|++++|||++...+. +..... . ++ .....+..++..+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~-~~~~~~-----------~-----~~---~~~~~~~~~~~~~ 61 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR-FASHSH-----------G-----FL---GQDGKAPGEIIAE 61 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG-GCSCCC-----------S-----ST---TCTTCCHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc-cchhhc-----------C-----Cc---CCCCCCHHHHHHH
Confidence 38999999999999999999999999999999653322 111000 0 11 1223456788999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+.+++. ...++++|++++... +.|.|.+.++ .++.||+||+|||..
T Consensus 62 ~~~~~~~~~~--v~~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~~~~d~vviAtG~~- 111 (297)
T 3fbs_A 62 ARRQIERYPT--IHWVEGRVTDAKGSF----------------------GEFIVEIDGG-----RRETAGRLILAMGVT- 111 (297)
T ss_dssp HHHHHTTCTT--EEEEESCEEEEEEET----------------------TEEEEEETTS-----CEEEEEEEEECCCCE-
T ss_pred HHHHHHhcCC--eEEEEeEEEEEEEcC----------------------CeEEEEECCC-----CEEEcCEEEECCCCC-
Confidence 9999888742 233467999999876 5688888776 589999999999964
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|..|.++ |.+.+.+..++...+.. .....+++|+|||+|.+|+|+|..|...+ . |+++.+++.
T Consensus 112 --~~~~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~---v~~v~~~~~-- 174 (297)
T 3fbs_A 112 --DELPEIA---GLRERWGSAVFHCPYCH------GYELDQGKIGVIAASPMAIHHALMLPDWG-E---TTFFTNGIV-- 174 (297)
T ss_dssp --EECCCCB---TTGGGBTTTEESCHHHH------TGGGTTCEEEEECCSTTHHHHHHHGGGTS-E---EEEECTTTC--
T ss_pred --CCCCCCC---CchhhcCCeeEEcccCc------chhhcCCEEEEEecCccHHHHHHHhhhcC-c---EEEEECCCC--
Confidence 6667777 77766554555444322 23356899999999999999999999875 4 999987663
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
.
T Consensus 175 --~----------------------------------------------------------------------------- 175 (297)
T 3fbs_A 175 --E----------------------------------------------------------------------------- 175 (297)
T ss_dssp --C-----------------------------------------------------------------------------
T ss_pred --C-----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccCcchhhhhccCcEEEeccCceeEecC-cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCC-C
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQDFSFCED-GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTE-K 400 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~-~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~-~ 400 (418)
+.+.+.+.+++.+|+++...+..+..+ .|.+++|++ +++|.||+|||++++..+++.+....-. ...+ .
T Consensus 176 ---~~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~~g~~~~~-----~~~G~~ 246 (297)
T 3fbs_A 176 ---PDADQHALLAARGVRVETTRIREIAGHADVVLADGRS-IALAGLFTQPKLRITVDWIEKLGCAVEE-----GPMGST 246 (297)
T ss_dssp ---CCHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCE-EEESEEEECCEEECCCSCHHHHTCCEEE-----ETTEEE
T ss_pred ---CCHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCE-EEEEEEEEccCcccCchhHHhcCCcccc-----CCCCce
Confidence 111223455666788887558888876 799999998 9999999999999986544433222100 0123 5
Q ss_pred ccceeeeeeccCcccc
Q 014821 401 LPLYRSAHIYIDTLTY 416 (418)
Q Consensus 401 ~~~~~~~~~~~~~~~~ 416 (418)
+.++..+.++.||||.
T Consensus 247 i~vd~~~~t~~~~vya 262 (297)
T 3fbs_A 247 IVTDPMKQTTARGIFA 262 (297)
T ss_dssp ECCCTTCBCSSTTEEE
T ss_pred EEeCCCCccCCCCEEE
Confidence 6676667788999985
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=229.03 Aligned_cols=259 Identities=17% Similarity=0.188 Sum_probs=188.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++||+|||||++|+++|..|++.|++|+|||++ +||.|..... .+.+.. .......++.++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~---------~~~~~~--------~~~~~~~~~~~~ 75 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGI---------VDDYLG--------LIEIQASDMIKV 75 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCE---------ECCSTT--------STTEEHHHHHHH
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeeccccc---------ccccCC--------CCCCCHHHHHHH
Confidence 479999999999999999999999999999997 8888876110 000000 111345789999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.++++++ .+.+ ++|++++... +.|.+.+.++ .++.||+||+|||..
T Consensus 76 ~~~~~~~~~v--~~~~-~~v~~i~~~~----------------------~~~~v~~~~g-----~~~~~d~lvlAtG~~- 124 (323)
T 3f8d_A 76 FNKHIEKYEV--PVLL-DIVEKIENRG----------------------DEFVVKTKRK-----GEFKADSVILGIGVK- 124 (323)
T ss_dssp HHHHHHTTTC--CEEE-SCEEEEEEC------------------------CEEEEESSS-----CEEEEEEEEECCCCE-
T ss_pred HHHHHHHcCC--EEEE-EEEEEEEecC----------------------CEEEEEECCC-----CEEEcCEEEECcCCC-
Confidence 9999999988 7777 8999998876 5688887765 489999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|..|.++ |.+.+.+..++...+.. .....+++|+|||+|.+|+|+|..|...+.. |++++|++.+.
T Consensus 125 --~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~---v~~~~~~~~~~ 190 (323)
T 3f8d_A 125 --RRKLGVP---GEQEFAGRGISYCSVAD------APLFKNRVVAVIGGGDSALEGAEILSSYSTK---VYLIHRRDTFK 190 (323)
T ss_dssp --ECCCCCT---TTTTTBTTTEESCHHHH------GGGGTTCEEEEECCSHHHHHHHHHHHHHSSE---EEEECSSSSCC
T ss_pred --CccCCCC---chhhhcCCceEEeccCC------HhHcCCCEEEEECCCHHHHHHHHHHHHhCCe---EEEEEeCCCCC
Confidence 6777777 77766555555432221 2446789999999999999999999998754 99999887422
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .
T Consensus 191 ~---~--------------------------------------------------------------------------- 192 (323)
T 3f8d_A 191 A---Q--------------------------------------------------------------------------- 192 (323)
T ss_dssp S---C---------------------------------------------------------------------------
T ss_pred c---C---------------------------------------------------------------------------
Confidence 1 0
Q ss_pred ccccCcchhh-hhccCcEEEeccC-ceeEecC----cEEEcC---Cc--eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYD-KVEEGSIILKKSQ-DFSFCED----GIVVDG---QT--TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~-~~~~~~v~~~~~~-v~~~~~~----~v~~~~---g~--~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+ ..++.+|+++.+. +..+..+ +|.+++ |+ + +++|.||+|+|++++.++++.++..
T Consensus 193 -----~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G~~p~~~~~~~~g~~---- 262 (323)
T 3f8d_A 193 -----PIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKE-LNVNGVFIEIGFDPPTDFAKSNGIE---- 262 (323)
T ss_dssp -----HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEE-EECSEEEECCCEECCHHHHHHTTCC----
T ss_pred -----HHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEE-EEcCEEEEEECCCCChhHHhhcCee----
Confidence 01111 2234578888886 7777655 377765 76 5 8999999999999995443332222
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
-+.++.+.++..+.++.||||.
T Consensus 263 ---~~~~g~i~vd~~~~t~~~~vya 284 (323)
T 3f8d_A 263 ---TDTNGYIKVDEWMRTSVPGVFA 284 (323)
T ss_dssp ---BCTTSSBCCCTTCBCSSTTEEE
T ss_pred ---ecCCCcEecCCCceecCCCEEE
Confidence 1446778888777788999996
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=227.15 Aligned_cols=262 Identities=18% Similarity=0.193 Sum_probs=185.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++||+|||||++|+++|..|++.|++++|||+. .+||.|...... ..+..+ ....+..++.++
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~---------~~~~~~-------~~~~~~~~~~~~ 70 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEV---------ENFPGF-------PEPIAGMELAQR 70 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCB---------CCSTTC-------SSCBCHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccccc---------ccCCCC-------CCCCCHHHHHHH
Confidence 579999999999999999999999999999997 788887652110 001111 112356788899
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEc--CCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFE--GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+.++++++ .+.+ ++|.+++.. . +..|.|.+.++ .++.||+||+|||.
T Consensus 71 l~~~~~~~gv--~~~~-~~v~~i~~~~~~---------------------~~~~~v~~~~g-----~~~~~~~vv~AtG~ 121 (325)
T 2q7v_A 71 MHQQAEKFGA--KVEM-DEVQGVQHDATS---------------------HPYPFTVRGYN-----GEYRAKAVILATGA 121 (325)
T ss_dssp HHHHHHHTTC--EEEE-CCEEEEEECTTS---------------------SSCCEEEEESS-----CEEEEEEEEECCCE
T ss_pred HHHHHHHcCC--EEEe-eeEEEEEeccCC---------------------CceEEEEECCC-----CEEEeCEEEECcCC
Confidence 9999999988 6666 789999876 3 12377777665 48999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
. |..|+++ |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|...+.. |++++|++.
T Consensus 122 ~---~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~ 186 (325)
T 2q7v_A 122 D---PRKLGIP---GEDNFWGKGVSTCATCD------GFFYKGKKVVVIGGGDAAVEEGMFLTKFADE---VTVIHRRDT 186 (325)
T ss_dssp E---ECCCCCT---TTTTTBTTTEESCHHHH------GGGGTTCEEEEECCSHHHHHHHHHHTTTCSE---EEEECSSSS
T ss_pred C---cCCCCCC---ChhhccCceEEEeccCC------HHHcCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEeCCCc
Confidence 4 6667777 76665544455433211 2345679999999999999999999887654 999998774
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccc
Q 014821 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (418)
Q Consensus 241 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (418)
+. + .
T Consensus 187 ~~-~--~------------------------------------------------------------------------- 190 (325)
T 2q7v_A 187 LR-A--N------------------------------------------------------------------------- 190 (325)
T ss_dssp CC-S--C-------------------------------------------------------------------------
T ss_pred CC-c--c-------------------------------------------------------------------------
Confidence 21 1 0
Q ss_pred ccccccCcchhh-hhccCcEEEeccC-ceeEecC----cEEEc---CCc-eeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 321 CLTITVPEKFYD-KVEEGSIILKKSQ-DFSFCED----GIVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 321 ~~~~~~~~~~~~-~~~~~~v~~~~~~-v~~~~~~----~v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
+.+.+ .+++.+|+++.+. +..+..+ +|.++ +|+ ..+++|.||+|||++++.++++.+
T Consensus 191 -------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~------ 257 (325)
T 2q7v_A 191 -------KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT------ 257 (325)
T ss_dssp -------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT------
T ss_pred -------hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh------
Confidence 00111 2233578888775 6677654 46765 675 238999999999999996544322
Q ss_pred hhhcCCCCCCccceeeeeeccCcccc
Q 014821 391 DYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+..+.++.+.++..+.++.||||.
T Consensus 258 --~~~~~~g~i~vd~~~~t~~~~vya 281 (325)
T 2q7v_A 258 --VSLRDDGYVDVRDEIYTNIPMLFA 281 (325)
T ss_dssp --SCBCTTSCBCCBTTTBCSSTTEEE
T ss_pred --cccCCCccEecCCCCccCCCCEEE
Confidence 111346678887777778999986
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=224.17 Aligned_cols=265 Identities=16% Similarity=0.185 Sum_probs=184.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
+||+|||||++|+++|..|++.|+ +++|||++ .+||.|...... ..+..+ .....+.++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~---------~~~~~~-------~~~~~~~~~~~~ 64 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEI---------ENYPGV-------KEVVSGLDFMQP 64 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCB---------CCSTTC-------CSCBCHHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccccccc---------ccCCCC-------cccCCHHHHHHH
Confidence 799999999999999999999999 99999994 688877652110 001100 123456788999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+.++++ .+.+ ++|.+++... +.|.|.+.++ .++.||+||+|||+.
T Consensus 65 l~~~~~~~~v--~~~~-~~v~~i~~~~----------------------~~~~v~~~~g-----~~~~~~~vv~AtG~~- 113 (311)
T 2q0l_A 65 WQEQCFRFGL--KHEM-TAVQRVSKKD----------------------SHFVILAEDG-----KTFEAKSVIIATGGS- 113 (311)
T ss_dssp HHHHHHTTSC--EEEC-SCEEEEEEET----------------------TEEEEEETTS-----CEEEEEEEEECCCEE-
T ss_pred HHHHHHHcCC--EEEE-EEEEEEEEcC----------------------CEEEEEEcCC-----CEEECCEEEECCCCC-
Confidence 9999988887 6776 7899998866 4577776555 479999999999964
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|..|+++ |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|...+.. |++++|++.+.
T Consensus 114 --~~~~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~~ 179 (311)
T 2q0l_A 114 --PKRTGIK---GESEYWGKGVSTCATCD------GFFYKNKEVAVLGGGDTAVEEAIYLANICKK---VYLIHRRDGFR 179 (311)
T ss_dssp --ECCCCCB---THHHHBTTTEESCHHHH------GGGGTTSEEEEECCSHHHHHHHHHHHTTSSE---EEEECSSSSCC
T ss_pred --CCCCCCC---ChhhccCCcEEEeecCC------hhhcCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEeeCCccC
Confidence 6667676 76554444445432211 2345679999999999999999999988654 99999877421
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
..
T Consensus 180 ---~~--------------------------------------------------------------------------- 181 (311)
T 2q0l_A 180 ---CA--------------------------------------------------------------------------- 181 (311)
T ss_dssp ---SC---------------------------------------------------------------------------
T ss_pred ---CC---------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCcchhhhh-ccCcEEEeccC-ceeEecC-----cEEEc---CCc-eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKV-EEGSIILKKSQ-DFSFCED-----GIVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~-~~~~v~~~~~~-v~~~~~~-----~v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.+ ++.+|+++.+. +..+..+ ++.++ +|+ ..+++|.||+|+|++|+.++++.+... .
T Consensus 182 -----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~---~ 253 (311)
T 2q0l_A 182 -----PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNS---M 253 (311)
T ss_dssp -----HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSC---B
T ss_pred -----HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhccccc---c
Confidence 0011122 23568888775 6666543 46665 675 238999999999999996554433100 0
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+..+.++.+.++..+.++.||||.
T Consensus 254 ~l~~~~~g~i~vd~~~~t~~~~vya 278 (311)
T 2q0l_A 254 LCKCDEYGSIVVDFSMKTNVQGLFA 278 (311)
T ss_dssp SSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred eeEeccCCCEEeCCccccCCCCeEE
Confidence 0111345778887777778999985
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=222.43 Aligned_cols=268 Identities=21% Similarity=0.252 Sum_probs=189.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEE-EeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIV-FEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~i-ie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
+++||+|||||++|+++|..|++.|++++| +|+ +.+||.|...... ..+|. .....+..++.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~------------~~~~~----~~~~~~~~~~~ 65 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEI------------ENYPG----VAQVMDGISFM 65 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCB------------CCSTT----CCSCBCHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeecee------------ccCCC----CCCCCCHHHHH
Confidence 568999999999999999999999999999 999 7789988763211 00110 12234668999
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++.+.++++++ .+.++ +|+++ .+. ..+.|.+.+... + ++.||+||+|||.
T Consensus 66 ~~~~~~~~~~~v--~~~~~-~v~~i-~~~--------------------~~~~~~v~~~~~--~---~~~~d~lvlAtG~ 116 (315)
T 3r9u_A 66 APWSEQCMRFGL--KHEMV-GVEQI-LKN--------------------SDGSFTIKLEGG--K---TELAKAVIVCTGS 116 (315)
T ss_dssp HHHHHHHTTTCC--EEECC-CEEEE-EEC--------------------TTSCEEEEETTS--C---EEEEEEEEECCCE
T ss_pred HHHHHHHHHcCc--EEEEE-EEEEE-ecC--------------------CCCcEEEEEecC--C---EEEeCEEEEeeCC
Confidence 999999999998 77776 88888 433 014577544443 1 8999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|..|.++ |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|...+.. |++++|.+.
T Consensus 117 ---~~~~~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~---v~~~~~~~~ 181 (315)
T 3r9u_A 117 ---APKKAGFK---GEDEFFGKGVSTCATCD------GFFYKNKEVAVLGGGDTALEEALYLANICSK---IYLIHRRDE 181 (315)
T ss_dssp ---EECCCCCB---TTTTTBTTTEESCHHHH------GGGGTTSEEEEECCBHHHHHHHHHHHTTSSE---EEEECSSSS
T ss_pred ---CCCCCCCC---ChhhcCCCeEEeeeccc------ccccCcCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEeCCC
Confidence 46777777 77766555666544332 2345689999999999999999999988754 999998875
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccc
Q 014821 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (418)
Q Consensus 241 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (418)
+. . . . .
T Consensus 182 ~~-~--~-------~----~------------------------------------------------------------ 187 (315)
T 3r9u_A 182 FR-A--A-------P----S------------------------------------------------------------ 187 (315)
T ss_dssp CB-S--C-------H----H------------------------------------------------------------
T ss_pred CC-C--C-------H----H------------------------------------------------------------
Confidence 31 1 0 0 0
Q ss_pred ccccccCcchhhhhccCcEEEeccC-ceeEecCc-----EEEc--CCc--eeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 321 CLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG-----IVVD--GQT--TPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~-----v~~~--~g~--~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
-+.+.+++.+|+++.+. +..+..+. ++++ +|+ + +++|.||+|+|++|+..+.+.....-
T Consensus 188 --------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~-~~~D~vv~a~G~~p~~~~~~~~~~~g-- 256 (315)
T 3r9u_A 188 --------TVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRD-LNVPGIFTFVGLNVRNEILKQDDSKF-- 256 (315)
T ss_dssp --------HHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEE-ECCSCEEECSCEEECCGGGBCTTSCB--
T ss_pred --------HHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEE-eecCeEEEEEcCCCCchhhhcccccc--
Confidence 00123345678888776 77775443 6666 776 5 89999999999999965544310000
Q ss_pred hhhcCCCCCCccceeeeeeccCcccc
Q 014821 391 DYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+..+.++.+.++..+.++.||||.
T Consensus 257 -~l~~~~~g~i~vd~~~~t~~~~v~a 281 (315)
T 3r9u_A 257 -LCNMEEGGQVSVDLKMQTSVAGLFA 281 (315)
T ss_dssp -SSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred -eeeecCCCcEEeCCCcccCCCCEEE
Confidence 0111445778888777779999985
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=227.18 Aligned_cols=266 Identities=19% Similarity=0.254 Sum_probs=186.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC----CCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR----SDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~----~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
++||+|||||++|+++|..|++.|++|+|||+. ..+||.|..... +..+|- ...+....+
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~------------~~~~~~----~~~~~~~~~ 85 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTE------------IENFPG----FPDGLTGSE 85 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSE------------ECCSTT----CTTCEEHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchh------------hcccCC----CcccCCHHH
Confidence 589999999999999999999999999999994 478887776321 000100 122345678
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+..++.+.++++++ .+.+++ |++++... +.|.+.+... +...++.+|+||+|+
T Consensus 86 ~~~~~~~~~~~~gv--~i~~~~-v~~i~~~~----------------------~~~~v~~~~~--~~~~~~~~d~vvlAt 138 (338)
T 3itj_A 86 LMDRMREQSTKFGT--EIITET-VSKVDLSS----------------------KPFKLWTEFN--EDAEPVTTDAIILAT 138 (338)
T ss_dssp HHHHHHHHHHHTTC--EEECSC-EEEEECSS----------------------SSEEEEETTC--SSSCCEEEEEEEECC
T ss_pred HHHHHHHHHHHcCC--EEEEeE-EEEEEEcC----------------------CEEEEEEEec--CCCcEEEeCEEEECc
Confidence 99999999999998 788877 99998765 5677766422 112578999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|.. |..|.++ |.+.+.+..++...+.... .....+++|+|||+|.+|+|+|..|...+.. |++++|+
T Consensus 139 G~~---~~~~~~~---g~~~~~~~~~~~~~~~~~~----~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~---v~~v~~~ 205 (338)
T 3itj_A 139 GAS---AKRMHLP---GEETYWQKGISACAVCDGA----VPIFRNKPLAVIGGGDSACEEAQFLTKYGSK---VFMLVRK 205 (338)
T ss_dssp CEE---ECCCCCT---THHHHBTTTEESCHHHHTT----SGGGTTSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSS
T ss_pred CCC---cCCCCCC---CchhccCccEEEchhcccc----hhhcCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcC
Confidence 964 6677777 7665544445543321100 1245689999999999999999999988754 9999988
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+.+...
T Consensus 206 ~~~~~~-------------------------------------------------------------------------- 211 (338)
T 3itj_A 206 DHLRAS-------------------------------------------------------------------------- 211 (338)
T ss_dssp SSCCSC--------------------------------------------------------------------------
T ss_pred CccCCC--------------------------------------------------------------------------
Confidence 752110
Q ss_pred ccccccccCcchhhhhc-cCcEEEeccC-ceeEecCc-----EEEcC-----CceeeeccEEEEccCCCCCcchhccccc
Q 014821 319 SSCLTITVPEKFYDKVE-EGSIILKKSQ-DFSFCEDG-----IVVDG-----QTTPLKTDLVILATGFKGDVKLKNIFLS 386 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~~~-----v~~~~-----g~~~~~~D~Vi~atG~~~~~~~~~~l~~ 386 (418)
+.+.+.+. ..+|+++.+. +..+..++ |++++ +++ +++|.||+|||++++..+.+. .
T Consensus 212 ---------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~~~~~~~-~- 279 (338)
T 3itj_A 212 ---------TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETD-LPVSGLFYAIGHTPATKIVAG-Q- 279 (338)
T ss_dssp ---------HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEE-EECSEEEECSCEEECCGGGBT-T-
T ss_pred ---------HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEE-EEeCEEEEEeCCCCChhHhhC-c-
Confidence 11122333 3478888875 77776543 77765 345 999999999999999654432 1
Q ss_pred hhhhhhhcCCCCCCccc-eeeeeeccCcccc
Q 014821 387 QTFQDYLAGSPTEKLPL-YRSAHIYIDTLTY 416 (418)
Q Consensus 387 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 416 (418)
+.-+.++.+.+ ...+.++.||||.
T Consensus 280 ------l~~~~~G~i~v~~~~~~t~~~~vya 304 (338)
T 3itj_A 280 ------VDTDEAGYIKTVPGSSLTSVPGFFA 304 (338)
T ss_dssp ------BCBCTTSCBCCCTTSSBCSSTTEEE
T ss_pred ------eEecCCCcEEEcCcccccCCCCEEE
Confidence 11144667764 4445788999985
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=234.53 Aligned_cols=209 Identities=21% Similarity=0.312 Sum_probs=142.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-----CceEEEeeCCCCCccccc--cCCcceecC-----------CccccccCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-----FHPIVFEARSDIGGAWIK--TVETTMLQT-----------PKQLYQFSDYP 64 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-----~~v~iie~~~~~gg~~~~--~~~~~~l~~-----------~~~~~~~~~~~ 64 (418)
.+||+|||||++|+++|..|++.| .+|+|||+++.+| |.. ..++..++. |...+.|..+.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l 107 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL 107 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence 469999999999999999999999 9999999998887 544 334444432 22222222110
Q ss_pred CCC-------CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce--E
Q 014821 65 WPD-------SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW--T 135 (418)
Q Consensus 65 ~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 135 (418)
... .+...++++.++.+|+++++++++. .+.++++|++++... + ..+.| .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~V~~i~~~~--~-----------------~~~~~~~~ 166 (463)
T 3s5w_A 108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE--QSRYGEEVLRIEPML--S-----------------AGQVEALR 166 (463)
T ss_dssp HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTT--TEEESEEEEEEEEEE--E-----------------TTEEEEEE
T ss_pred hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEec--C-----------------CCceEEEE
Confidence 000 1134567889999999999999987 899999999998862 0 01345 5
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCc--eEEeccCCCCchhhhhhhhcCCCEEEEEcCCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG--KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQK 213 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 213 (418)
|.+.++. +...++.||+||+|||. .|.+|+. .+.+.+ .++|+..+............++++|+|||+|.
T Consensus 167 V~~~~g~-g~~~~~~~d~lVlAtG~---~p~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 237 (463)
T 3s5w_A 167 VISRNAD-GEELVRTTRALVVSPGG---TPRIPQV-----FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQ 237 (463)
T ss_dssp EEEEETT-SCEEEEEESEEEECCCC---EECCCGG-----GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSH
T ss_pred EEEecCC-CceEEEEeCEEEECCCC---CCCCcch-----hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCH
Confidence 5555543 44458999999999995 4666652 233334 57887766431100000112588999999999
Q ss_pred CHHHHHHHHhhhcCCCCCeEEEEecCcccccC
Q 014821 214 SALDIAMECTTANGLENPCTVLYRTEHWNIPD 245 (418)
Q Consensus 214 sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~ 245 (418)
+|+|+|..|...... .+|++++|++.+ .|.
T Consensus 238 sg~e~a~~l~~~~~~-~~Vt~v~r~~~~-~p~ 267 (463)
T 3s5w_A 238 SAAEAFIDLNDSYPS-VQADMILRASAL-KPA 267 (463)
T ss_dssp HHHHHHHHHHHHCTT-EEEEEECSSSSC-CBC
T ss_pred hHHHHHHHHHhcCCC-CeEEEEEeCCCC-cCc
Confidence 999999999998222 459999999874 443
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-27 Score=224.60 Aligned_cols=265 Identities=17% Similarity=0.291 Sum_probs=182.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
|+.+||+|||||++|+++|..|++.|++++|||+ ..+||.|...... ..+..+ .......++.
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~---------~~~~~~-------~~~~~~~~~~ 65 (320)
T 1trb_A 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEV---------ENWPGD-------PNDLTGPLLM 65 (320)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBC---------CCSTTC-------CSSCBHHHHH
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchhh---------hhCCCC-------CCCCCHHHHH
Confidence 4568999999999999999999999999999997 4688876542100 001101 1123456888
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+++.+.+.++++ .+++++ |..++... +.|.+ +.++ .++.||+||+|||.
T Consensus 66 ~~~~~~~~~~~~--~~~~~~-v~~i~~~~----------------------~~~~v-~~~~-----~~~~~~~lv~AtG~ 114 (320)
T 1trb_A 66 ERMHEHATKFET--EIIFDH-INKVDLQN----------------------RPFRL-NGDN-----GEYTCDALIIATGA 114 (320)
T ss_dssp HHHHHHHHHTTC--EEECCC-EEEEECSS----------------------SSEEE-EESS-----CEEEEEEEEECCCE
T ss_pred HHHHHHHHHCCC--EEEEee-eeEEEecC----------------------CEEEE-EeCC-----CEEEcCEEEECCCC
Confidence 899999988888 777764 88888655 55777 4444 47999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
. |..|+++ |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|...+.. |++++|++.
T Consensus 115 ~---~~~~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~ 179 (320)
T 1trb_A 115 S---ARYLGLP---SEEAFKGRGVSACATSD------GFFYRNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDG 179 (320)
T ss_dssp E---ECCCCCH---HHHHTBTTTEESCHHHH------GGGGTTSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSSS
T ss_pred C---cCCCCCC---ChHHhCCceeEecccCC------ccccCCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeCCc
Confidence 5 6666666 65544443444332221 2335689999999999999999999888754 999998774
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccc
Q 014821 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (418)
Q Consensus 241 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (418)
+... . .
T Consensus 180 ~~~~----------~----~------------------------------------------------------------ 185 (320)
T 1trb_A 180 FRAE----------K----I------------------------------------------------------------ 185 (320)
T ss_dssp CCCC----------H----H------------------------------------------------------------
T ss_pred cccC----------H----H------------------------------------------------------------
Confidence 3110 0 0
Q ss_pred ccccccCcchhhhhccCcEEEeccC-ceeEecCc-----EEEcC----Cc-eeeeccEEEEccCCCCCcchhccccchhh
Q 014821 321 CLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG-----IVVDG----QT-TPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (418)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~-----v~~~~----g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~ 389 (418)
+.+.+.+.+++.+|+++.+. +..+..+. |.+++ |+ +.+++|.||+|+|++++..+.+
T Consensus 186 -----~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~------- 253 (320)
T 1trb_A 186 -----LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE------- 253 (320)
T ss_dssp -----HHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-------
T ss_pred -----HHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-------
Confidence 00112234566778888886 77776543 77765 42 2389999999999999965443
Q ss_pred hhhhcCCCCCCccceeee-----eeccCcccc
Q 014821 390 QDYLAGSPTEKLPLYRSA-----HIYIDTLTY 416 (418)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 416 (418)
..+..+ ++.+.++..+ .++.||||.
T Consensus 254 -~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya 283 (320)
T 1trb_A 254 -GQLELE-NGYIKVQSGIHGNATQTSIPGVFA 283 (320)
T ss_dssp -TTSCEE-TTEECCCCSSSSCTTBCSSTTEEE
T ss_pred -cccccc-CceEEECCCcccccccCCCCCEEE
Confidence 111112 5667776663 788999985
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=219.62 Aligned_cols=263 Identities=14% Similarity=0.191 Sum_probs=183.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++||+|||||++|+++|..|++.|++++|||+ ..||.|...... ..+. ...+....++..+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~~---------~~~~--------~~~~~~~~~~~~~ 61 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVDI---------ENYI--------SVPKTEGQKLAGA 61 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCEE---------CCBT--------TBSSEEHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccccc---------cccc--------CcCCCCHHHHHHH
Confidence 37999999999999999999999999999986 478887652210 0000 1123355688899
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.++++++ .+.++++|+.++... + ..+.|.|.+.++ .++.||+||+|||+.
T Consensus 62 ~~~~~~~~~v--~~~~~~~v~~i~~~~--~-----------------~~~~~~v~~~~g-----~~~~~~~lv~AtG~~- 114 (310)
T 1fl2_A 62 LKVHVDEYDV--DVIDSQSASKLIPAA--V-----------------EGGLHQIETASG-----AVLKARSIIVATGAK- 114 (310)
T ss_dssp HHHHHHTSCE--EEECSCCEEEEECCS--S-----------------TTCCEEEEETTS-----CEEEEEEEEECCCEE-
T ss_pred HHHHHHHcCC--eEEccCEEEEEEecc--c-----------------CCceEEEEECCC-----CEEEeCEEEECcCCC-
Confidence 9999998888 788888999998653 0 013588887665 479999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|..|+++ |.+.+.+..++..... ......+++|+|||+|.+|+|+|..|...+.. |+++.|.+.+.
T Consensus 115 --~~~~~~~---g~~~~~~~~~~~~~~~------~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~~ 180 (310)
T 1fl2_A 115 --WRNMNVP---GEDQYRTKGVTYCPHC------DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEMK 180 (310)
T ss_dssp --ECCCCCT---TTTTTBTTTEESCHHH------HGGGGBTCEEEEECCSHHHHHHHHHHHTTBSE---EEEECSSSSCC
T ss_pred --cCCCCCC---ChhhcccceeEEeccC------cHhhcCCCEEEEECCCHHHHHHHHHHHHhCCE---EEEEEeCcccC
Confidence 5566666 7665544444433221 12345689999999999999999999887754 99999887531
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
..
T Consensus 181 ---~~--------------------------------------------------------------------------- 182 (310)
T 1fl2_A 181 ---AD--------------------------------------------------------------------------- 182 (310)
T ss_dssp ---SC---------------------------------------------------------------------------
T ss_pred ---cc---------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCcchhhhhcc-CcEEEeccC-ceeEecC-----cEEEcC---Cc-eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVEE-GSIILKKSQ-DFSFCED-----GIVVDG---QT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~~-~~v~~~~~~-v~~~~~~-----~v~~~~---g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.+++ .+|+++.+. +.++..+ +|.+++ |+ ..+++|.||+|+|++|+.++++ .
T Consensus 183 -----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--------~ 249 (310)
T 1fl2_A 183 -----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLE--------G 249 (310)
T ss_dssp -----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT--------T
T ss_pred -----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHh--------c
Confidence 001122333 468888775 6666643 466653 54 2389999999999999854332 2
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+..+..+.+.++..+.++.||||.
T Consensus 250 ~l~~~~~g~i~vd~~~~t~~~~vya 274 (310)
T 1fl2_A 250 AVERNRMGEIIIDAKCETNVKGVFA 274 (310)
T ss_dssp TSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred cccccCCCcEEcCCCCccCCCCEEE
Confidence 1111345678887777788999986
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=220.11 Aligned_cols=260 Identities=12% Similarity=0.108 Sum_probs=170.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
|+.+||+||||||||++||.+|++.|++++|||+. .+||.+...+++. +. ....+..++.
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~~~~~--------------~~-----~~~~~~~~~~ 63 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQNSHGF--------------IT-----RDGIKPEEFK 63 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSCBCCS--------------TT-----CTTBCHHHHH
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeeecCCc--------------cC-----CCCCCHHHHH
Confidence 88999999999999999999999999999999995 4666554433321 11 1112345666
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.......+++. ...+...+..+.... .+.+.+.+.++ .++.||+||||||+
T Consensus 64 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~v~~~~g-----~~~~a~~liiATGs 115 (304)
T 4fk1_A 64 EIGLNEVMKYPS--VHYYEKTVVMITKQS---------------------TGLFEIVTKDH-----TKYLAERVLLATGM 115 (304)
T ss_dssp HHHHHHHTTSTT--EEEEECCEEEEEECT---------------------TSCEEEEETTC-----CEEEEEEEEECCCC
T ss_pred HHHHHHHHhcCC--EEEEeeEEEEeeecC---------------------CCcEEEEECCC-----CEEEeCEEEEccCC
Confidence 666666666665 445556777776655 35678887776 58999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCC-HHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKS-ALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~s-a~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|+++ |.+.+.+..++...... ....++++++|||+|.. ++|+|..+...+.. |+++.+..
T Consensus 116 ---~p~~p~i~---G~~~~~~~~v~~~~~~~------~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~---v~i~~~~~ 180 (304)
T 4fk1_A 116 ---QEEFPSIP---NVREYYGKSLFSCPYCD------GWELKDQPLIIISENEDHTLHMTKLVYNWSTD---LVIATNGN 180 (304)
T ss_dssp ---EEECCSCT---THHHHBTTTEESCHHHH------SGGGTTSCEEEECCSHHHHHHHHHHHTTTCSC---EEEECSSC
T ss_pred ---cccccccc---Cccccccceeeeccccc------hhHhcCCceeeecCCCchhhhHHHHHHhCCce---EEEEeccc
Confidence 57888888 77655443333222211 23356788889998865 56787777666554 88877654
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
.+ .
T Consensus 181 ~~-~---------------------------------------------------------------------------- 183 (304)
T 4fk1_A 181 EL-S---------------------------------------------------------------------------- 183 (304)
T ss_dssp CC-C----------------------------------------------------------------------------
T ss_pred cc-h----------------------------------------------------------------------------
Confidence 21 0
Q ss_pred cccccccCcchhhhhccCcEEEeccCceeEecC-----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQDFSFCED-----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~-----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~ 394 (418)
+.+.+.+++.++.++.+.+..+..+ .|.+++|++ +++|.+|+++|..++..++..++..
T Consensus 184 --------~~~~~~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~-i~~~~~vi~~g~~~~~~~~~~~g~~------- 247 (304)
T 4fk1_A 184 --------QTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLR-IERAGGFIVPTFFRPNQFIEQLGCE------- 247 (304)
T ss_dssp --------HHHHHHHHTTTCCEECSCEEEEESGGGCCCEEEETTSCE-ECCCEEEECCEEECSSCHHHHTTCC-------
T ss_pred --------hhhhhhhhccceeEeeeeEEEeecCCCeeeeeeccccce-eeecceeeeeccccCChhhhhcCeE-------
Confidence 0111223333444454444444432 378899999 9999988888877775443332222
Q ss_pred CCCCCCccceeeeeeccCcccc
Q 014821 395 GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
-+.++.+.++..+.+++||||.
T Consensus 248 ~~~~G~I~vd~~~~Ts~p~IyA 269 (304)
T 4fk1_A 248 LQSNGTFVIDDFGRTSEKNIYL 269 (304)
T ss_dssp CCTTSSSCSSTTCBCSSTTEEE
T ss_pred ECCCCCEEECcCCccCCCCEEE
Confidence 1446778888888999999995
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=223.53 Aligned_cols=261 Identities=18% Similarity=0.292 Sum_probs=182.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
..+||+|||||++|+++|..|++.|++++|||+. .+||.|...... ..+..+ .......++..
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~---------~~~~~~-------~~~~~~~~~~~ 75 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDV---------ENYPGF-------RNGITGPELMD 75 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCB---------CCSTTC-------TTCBCHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchh---------hhcCCC-------CCCCCHHHHHH
Confidence 3589999999999999999999999999999984 688877552110 001111 11134568889
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE-EEecCCCCceeEEEeCEEEEeecc
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV-AVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
++.+.+.++++ .+++++ |.+++. . +.|.| .+.++ .++.||+||+|||.
T Consensus 76 ~l~~~~~~~~v--~~~~~~-v~~i~~-~----------------------~~~~v~~~~~g-----~~~~~d~lviAtG~ 124 (335)
T 2a87_A 76 EMREQALRFGA--DLRMED-VESVSL-H----------------------GPLKSVVTADG-----QTHRARAVILAMGA 124 (335)
T ss_dssp HHHHHHHHTTC--EEECCC-EEEEEC-S----------------------SSSEEEEETTS-----CEEEEEEEEECCCE
T ss_pred HHHHHHHHcCC--EEEEee-EEEEEe-C----------------------CcEEEEEeCCC-----CEEEeCEEEECCCC
Confidence 99999988888 777765 888876 4 34777 66554 57999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
. |..|+++ |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|...+. +|+++.|++.
T Consensus 125 ~---~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~---~V~l~~~~~~ 189 (335)
T 2a87_A 125 A---ARYLQVP---GEQELLGRGVSSCATCD------GFFFRDQDIAVIGGGDSAMEEATFLTRFAR---SVTLVHRRDE 189 (335)
T ss_dssp E---ECCCCCT---HHHHTBTTTEESCHHHH------GGGGTTCEEEEECSSHHHHHHHHHHTTTCS---EEEEECSSSS
T ss_pred C---ccCCCCC---chHhccCCceEEeeccc------hhhcCCCEEEEECCCHHHHHHHHHHHHhCC---eEEEEEcCCc
Confidence 5 6666666 66555444455432211 233568999999999999999999988765 4999998774
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccc
Q 014821 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (418)
Q Consensus 241 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (418)
+...
T Consensus 190 ~~~~---------------------------------------------------------------------------- 193 (335)
T 2a87_A 190 FRAS---------------------------------------------------------------------------- 193 (335)
T ss_dssp CSSC----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3110
Q ss_pred ccccccCcchh-hhhccCcEEEeccC-ceeEecCc----EEEc---CCc-eeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 321 CLTITVPEKFY-DKVEEGSIILKKSQ-DFSFCEDG----IVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~v~~~~~~-v~~~~~~~----v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
+.+. +.+++.+|+++.+. +..+..++ +.++ +|+ +.+++|.||+|+|++++..+.+
T Consensus 194 -------~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-------- 258 (335)
T 2a87_A 194 -------KIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-------- 258 (335)
T ss_dssp -------TTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB--------
T ss_pred -------HHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh--------
Confidence 0011 23345678888775 77776543 7765 453 2389999999999999965443
Q ss_pred hhhcCCCCCCccceeee-eeccCcccc
Q 014821 391 DYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
..+..+.++.+.++..+ .++.||||.
T Consensus 259 ~~l~~~~~G~i~vd~~~~~t~~~~iya 285 (335)
T 2a87_A 259 EAIDVDPDGYVLVQGRTTSTSLPGVFA 285 (335)
T ss_dssp TTBCBCTTSCBCCSTTSSBCSSTTEEE
T ss_pred cccccCCCccEEeCCCCCccCCCCEEE
Confidence 11111446778887765 888999995
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=220.91 Aligned_cols=263 Identities=18% Similarity=0.232 Sum_probs=179.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEee----CCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA----RSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~----~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
++||+|||||++|+++|..|++.|++++|||+ ....||.|..... ...+..+ .......+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~---------~~~~~~~-------~~~~~~~~ 71 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD---------VENFPGF-------PEGILGVE 71 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE---------ECCSTTC-------TTCEEHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc---------cccCCCC-------ccCCCHHH
Confidence 47999999999999999999999999999999 4556666544210 0011111 11124568
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+..++.+.++++++ .+.+++ |.+++... +.|+|.+ ++ .++.||+||+|+
T Consensus 72 ~~~~l~~~~~~~gv--~~~~~~-v~~i~~~~----------------------~~~~v~~-~~-----~~~~~~~vv~A~ 120 (333)
T 1vdc_A 72 LTDKFRKQSERFGT--TIFTET-VTKVDFSS----------------------KPFKLFT-DS-----KAILADAVILAI 120 (333)
T ss_dssp HHHHHHHHHHHTTC--EEECCC-CCEEECSS----------------------SSEEEEC-SS-----EEEEEEEEEECC
T ss_pred HHHHHHHHHHHCCC--EEEEeE-EEEEEEcC----------------------CEEEEEE-CC-----cEEEcCEEEECC
Confidence 88899988888888 777765 88888755 5678876 43 589999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCC----CCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 159 GRFSDVPNIPEFPPKKGPEA----FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
|.. |..|+++ |.+. |.+..+|+..+.... .....+++|+|||+|.+|+|+|..|...+.. |++
T Consensus 121 G~~---~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~---V~l 187 (333)
T 1vdc_A 121 GAV---AKRLSFV---GSGEVLGGFWNRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEANFLTKYGSK---VYI 187 (333)
T ss_dssp CEE---ECCCCCB---TCSSSSSCCBTTTEESCHHHHTT----SGGGTTSEEEEECCSHHHHHHHHHHTTTSSE---EEE
T ss_pred CCC---cCCCCCC---CccccccccccCcEEEeccCccc----hhhcCCCeEEEECCChHHHHHHHHHHhcCCe---EEE
Confidence 965 5566666 5544 433444433221100 0125689999999999999999999887654 999
Q ss_pred EEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccc
Q 014821 235 LYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSF 314 (418)
Q Consensus 235 ~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (418)
+.|++.+.. .
T Consensus 188 v~~~~~~~~---~------------------------------------------------------------------- 197 (333)
T 1vdc_A 188 IHRRDAFRA---S------------------------------------------------------------------- 197 (333)
T ss_dssp ECSSSSCCS---C-------------------------------------------------------------------
T ss_pred EecCCcCCc---c-------------------------------------------------------------------
Confidence 998874210 0
Q ss_pred ccccccccccccCcchh-hhhccCcEEEeccC-ceeEecCc-------EEEc---CCc-eeeeccEEEEccCCCCCcchh
Q 014821 315 LQELSSCLTITVPEKFY-DKVEEGSIILKKSQ-DFSFCEDG-------IVVD---GQT-TPLKTDLVILATGFKGDVKLK 381 (418)
Q Consensus 315 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~-v~~~~~~~-------v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~ 381 (418)
+.+. +.+++.+|+++.+. +..+..++ +.++ +|+ +.+++|.||+|+|++++..+.
T Consensus 198 -------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 264 (333)
T 1vdc_A 198 -------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFL 264 (333)
T ss_dssp -------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG
T ss_pred -------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHh
Confidence 0011 23345678888775 66775432 6765 453 238999999999999996544
Q ss_pred ccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 382 NIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
+ ..+..+.++.+.++..+ .++.||||.
T Consensus 265 ~--------~~l~~~~~G~i~vd~~~~~t~~~~vya 292 (333)
T 1vdc_A 265 D--------GGVELDSDGYVVTKPGTTQTSVPGVFA 292 (333)
T ss_dssp T--------TSSCBCTTSCBCCCTTSCBCSSTTEEE
T ss_pred h--------ccccccCCCCEEechhhcccCCCCEEE
Confidence 3 11111446778887765 788999995
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=218.34 Aligned_cols=260 Identities=15% Similarity=0.179 Sum_probs=177.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|++.|++++|||+ ..+||.|.....- ..+..+ ......++.++
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~---------~~~~~~--------~~~~~~~~~~~ 77 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLV---------ENYLGF--------KSIVGSELAKL 77 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCB---------CCBTTB--------SSBCHHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchh---------hhcCCC--------cccCHHHHHHH
Confidence 47999999999999999999999999999999 5688877642110 001100 12345678888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.++++++ .+.+ ++|.+++... +.|.|.+ ++ .++.||+||+|+|+.
T Consensus 78 ~~~~~~~~~v--~~~~-~~v~~i~~~~----------------------~~~~v~~-~~-----~~~~~~~li~AtG~~- 125 (319)
T 3cty_A 78 FADHAANYAK--IREG-VEVRSIKKTQ----------------------GGFDIET-ND-----DTYHAKYVIITTGTT- 125 (319)
T ss_dssp HHHHHHTTSE--EEET-CCEEEEEEET----------------------TEEEEEE-SS-----SEEEEEEEEECCCEE-
T ss_pred HHHHHHHcCC--EEEE-eeEEEEEEeC----------------------CEEEEEE-CC-----CEEEeCEEEECCCCC-
Confidence 8888888887 6766 7899998765 4577765 33 379999999999964
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|..|+++ +.+.+.+..++...... .....+++|+|||+|.+|+|+|..|...+.. |++++|.+.+.
T Consensus 126 --~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~---V~~i~~~~~~~ 191 (319)
T 3cty_A 126 --HKHLGVK---GESEYFGKGTSYCSTCD------GYLFKGKRVVTIGGGNSGAIAAISMSEYVKN---VTIIEYMPKYM 191 (319)
T ss_dssp --ECCCCCB---TTTTTBTTTEESCHHHH------GGGGBTSEEEEECCSHHHHHHHHHHTTTBSE---EEEECSSSSCC
T ss_pred --cccCCCC---ChHHhCCceEEEEEecc------hhhcCCCeEEEECCCHHHHHHHHHHHhhCCc---EEEEEcCCccC
Confidence 6667676 66555433344222111 2335679999999999999999999988754 99999876421
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .
T Consensus 192 ~---~--------------------------------------------------------------------------- 193 (319)
T 3cty_A 192 C---E--------------------------------------------------------------------------- 193 (319)
T ss_dssp S---C---------------------------------------------------------------------------
T ss_pred C---C---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred ccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEc---CCc-eeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
+.+.+.+++.+|+++.+. +..+..+ ++.+. +|+ ..+++|.||+|||+.++..+++.+...
T Consensus 194 -----~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~----- 263 (319)
T 3cty_A 194 -----NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVK----- 263 (319)
T ss_dssp -----HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCC-----
T ss_pred -----HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcccc-----
Confidence 001122233456666554 5555433 36665 665 238999999999999996544432211
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
-+..+.+.++..+.++.||||.
T Consensus 264 --~~~~g~i~vd~~~~t~~~~vya 285 (319)
T 3cty_A 264 --LDERGYIVVDSRQRTSVPGVYA 285 (319)
T ss_dssp --BCTTSCBCCCTTCBCSSTTEEE
T ss_pred --ccCCccEeCCCCCccCCCCEEE
Confidence 1345678887777788999986
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=230.36 Aligned_cols=278 Identities=16% Similarity=0.189 Sum_probs=165.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccc-cCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|.++||+|||||++|+++|..|++. +.+|+|||+++.++ |.. ..+. .+.. .+.. ....++...
T Consensus 1 M~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~gl~~----------~~~g-~~~~-~~~~~~~~~ 66 (472)
T 3iwa_A 1 MSLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGCGIPY----------YVSG-EVSN-IESLQATPY 66 (472)
T ss_dssp ---CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccccccch----------hhcC-CCCc-hHHhccccc
Confidence 7788999999999999999999998 89999999987653 111 0000 0000 0000 001111122
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++..+.+.+.+++++ .++++++|++++... + .+.+.+..++....+.||+||+|
T Consensus 67 ~~~~~~~~~~~~~gi--~~~~~~~V~~id~~~----------------------~--~v~~~~~~~g~~~~~~~d~lviA 120 (472)
T 3iwa_A 67 NVVRDPEFFRINKDV--EALVETRAHAIDRAA----------------------H--TVEIENLRTGERRTLKYDKLVLA 120 (472)
T ss_dssp --------------C--EEECSEEEEEEETTT----------------------T--EEEEEETTTCCEEEEECSEEEEC
T ss_pred hhccCHHHHhhhcCc--EEEECCEEEEEECCC----------------------C--EEEEeecCCCCEEEEECCEEEEe
Confidence 355666777767788 788899999998765 3 34444422344468999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhh--cCCCEEEEEcCCCCHHHHHHHHhhh-cCCCCCeEE
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANL--VKGKRVTVVGLQKSALDIAMECTTA-NGLENPCTV 234 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~VvG~G~sa~e~a~~l~~~-~~~~~~V~~ 234 (418)
||+ .|..|+++ |.+. ..+++...+.+.. ...... ..+++++|||+|.+|+|+|..|... +.. |++
T Consensus 121 tG~---~p~~p~i~---G~~~--~~v~~~~~~~~~~-~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~---Vtl 188 (472)
T 3iwa_A 121 LGS---KANRPPVE---GMDL--AGVTPVTNLDEAE-FVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGID---TTV 188 (472)
T ss_dssp CCE---EECCCSCT---TTTS--BTEEECCSHHHHH-HHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCE---EEE
T ss_pred CCC---CcCCCCCC---CCCC--CCEEEeCCHHHHH-HHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc---EEE
Confidence 995 47777777 6541 2243322221111 000111 3478999999999999999999988 765 999
Q ss_pred EEecCccccc-CCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcc
Q 014821 235 LYRTEHWNIP-DYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHS 313 (418)
Q Consensus 235 ~~r~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (418)
+.+.+.+ .+ ... . .
T Consensus 189 v~~~~~~-l~~~~~-------~----~----------------------------------------------------- 203 (472)
T 3iwa_A 189 VELADQI-MPGFTS-------K----S----------------------------------------------------- 203 (472)
T ss_dssp ECSSSSS-STTTSC-------H----H-----------------------------------------------------
T ss_pred EEccCcc-cccccC-------H----H-----------------------------------------------------
Confidence 9998753 33 221 0 0
Q ss_pred cccccccccccccCcchhhhhccCcEEEeccC-ceeEec-Cc---EEEcCCceeeeccEEEEccCCCCCcchhccccchh
Q 014821 314 FLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE-DG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQT 388 (418)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~-~~---v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~ 388 (418)
+.+.+.+.+++.+|+++.+. +.+++. ++ +.+++|++ +++|.||+|||++++..+.+
T Consensus 204 ------------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~-i~aD~Vv~a~G~~p~~~l~~------ 264 (472)
T 3iwa_A 204 ------------LSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRT-LDADLVILAAGVSPNTQLAR------ 264 (472)
T ss_dssp ------------HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCE-EECSEEEECSCEEECCHHHH------
T ss_pred ------------HHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCE-EEcCEEEECCCCCcCHHHHH------
Confidence 11112335566678888875 777764 32 67788988 99999999999999854333
Q ss_pred hhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 389 FQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
...+. +.++.+.++..+.++.||||.
T Consensus 265 --~~gl~~~~~g~i~vd~~~~t~~~~Iya 291 (472)
T 3iwa_A 265 --DAGLELDPRGAIIVDTRMRTSDPDIFA 291 (472)
T ss_dssp --HHTCCBCTTCCEECCTTCBCSSTTEEE
T ss_pred --hCCccCCCCCCEEECCCcccCCCCEEE
Confidence 22232 346778888777778999986
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=224.12 Aligned_cols=264 Identities=16% Similarity=0.219 Sum_probs=187.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
..+||+|||||++|+++|.+|++.|++++|+|+ .+||.|....... .+. ...+....++..
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~~---------~~~--------~~~~~~~~~l~~ 271 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDIE---------NYI--------SVPKTEGQKLAG 271 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCBC---------CBT--------TBSSBCHHHHHH
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccccccccc---------ccC--------CCCCCCHHHHHH
Confidence 468999999999999999999999999999987 4788876522100 010 111245678899
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++.+.++++++ .+..+++|.+++... + .++.|.|.+.++ .++.||+||+|||+.
T Consensus 272 ~l~~~~~~~gv--~v~~~~~v~~i~~~~--~-----------------~~~~~~V~~~~g-----~~~~~d~vVlAtG~~ 325 (521)
T 1hyu_A 272 ALKAHVSDYDV--DVIDSQSASKLVPAA--T-----------------EGGLHQIETASG-----AVLKARSIIIATGAK 325 (521)
T ss_dssp HHHHHHHTSCE--EEECSCCEEEEECCS--S-----------------TTSCEEEEETTS-----CEEEEEEEEECCCEE
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEecc--C-----------------CCceEEEEECCC-----CEEEcCEEEECCCCC
Confidence 99999999998 888888999998643 0 023588887765 479999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
|..|.++ |.+.+.+..++.+..+. .....+++|+|||+|.+|+|+|..|...+.. |+++.|.+.+
T Consensus 326 ---~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~---Vtlv~~~~~l 390 (521)
T 1hyu_A 326 ---WRNMNVP---GEDQYRTKGVTYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEM 390 (521)
T ss_dssp ---ECCCCCT---TTTTTTTTTEECCTTCC------GGGGBTSEEEEECCSHHHHHHHHHHHHHBSE---EEEECSSSSC
T ss_pred ---cCCCCCC---ChhhhcCceEEEeecCc------hhhcCCCeEEEECCCHHHHHHHHHHHhhCCE---EEEEEeCccc
Confidence 5666666 77666554455444332 2345689999999999999999999988765 9999987753
Q ss_pred cccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccc
Q 014821 242 NIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSC 321 (418)
Q Consensus 242 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (418)
. + .
T Consensus 391 ~-~--~-------------------------------------------------------------------------- 393 (521)
T 1hyu_A 391 K-A--D-------------------------------------------------------------------------- 393 (521)
T ss_dssp C-S--C--------------------------------------------------------------------------
T ss_pred C-c--C--------------------------------------------------------------------------
Confidence 1 1 0
Q ss_pred cccccCcchhhhhcc-CcEEEeccC-ceeEecC-----cEEEcC---Cc-eeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 322 LTITVPEKFYDKVEE-GSIILKKSQ-DFSFCED-----GIVVDG---QT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 322 ~~~~~~~~~~~~~~~-~~v~~~~~~-v~~~~~~-----~v~~~~---g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
..+.+.+++ .+|+++.+. +..+..+ ++.+.+ |+ ..+++|.||+|+|++|+..++ .
T Consensus 394 ------~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l--------~ 459 (521)
T 1hyu_A 394 ------QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL--------E 459 (521)
T ss_dssp ------HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGG--------T
T ss_pred ------HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHH--------h
Confidence 001123343 578888875 6677643 356653 54 238999999999999985433 2
Q ss_pred hhhcCCCCCCccceeeeeeccCcccc
Q 014821 391 DYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..+.-+..+.+.++..+.++.||||.
T Consensus 460 ~~l~~~~~G~I~Vd~~~~ts~p~VfA 485 (521)
T 1hyu_A 460 GALERNRMGEIIIDAKCETSVKGVFA 485 (521)
T ss_dssp TTSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred hhhccCCCCcEEeCCCCCCCCCCEEE
Confidence 22211446778888777788999986
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=213.05 Aligned_cols=176 Identities=20% Similarity=0.239 Sum_probs=119.3
Q ss_pred CC--CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 ME--KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~--~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|. .|||+|||||+||+++|..|++.|++|+|||+ ..+||.+.....- ..+.. .......+
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~~~i---------~~~p~--------~~~~~~~~ 63 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTEEV---------ENFPG--------FEMITGPD 63 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGCSCB---------CCSTT--------CSSBCHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeeccccc---------CCcCC--------ccccchHH
Confidence 54 48999999999999999999999999999998 5688876541110 00110 11223456
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.........++.. .+.....+....... ..+...++ .++.||+|||||
T Consensus 64 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------------~~~~~~~~-----~~~~~d~liiAt 112 (312)
T 4gcm_A 64 LSTKMFEHAKKFGA--VYQYGDIKSVEDKGE------------------------YKVINFGN-----KELTAKAVIIAT 112 (312)
T ss_dssp HHHHHHHHHHHTTC--EEEECCCCEEEECSS------------------------CEEEECSS-----CEEEEEEEEECC
T ss_pred HHHHHHHHHhhccc--cccceeeeeeeeeec------------------------ceeeccCC-----eEEEeceeEEcc
Confidence 66666666666655 444444443333222 22333333 589999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+ .|..|++| |.+.+.+..++....++ ....++++|+|||+|.+|+|+|..|...+.. |+++.|.
T Consensus 113 Gs---~~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~ 177 (312)
T 4gcm_A 113 GA---EYKKIGVP---GEQELGGRGVSYCAVCD------GAFFKNKRLFVIGGGDSAVEEGTFLTKFADK---VTIVHRR 177 (312)
T ss_dssp CE---EECCCCCT---TTTTTBTTTEESCHHHH------GGGGTTCEEEEECCSHHHHHHHHHHTTTCSE---EEEECSS
T ss_pred cC---ccCcCCCC---ChhhhCCccEEeeeccC------ccccCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEecc
Confidence 95 47778788 87766554454333221 3446689999999999999999999888765 9999998
Q ss_pred Cc
Q 014821 239 EH 240 (418)
Q Consensus 239 ~~ 240 (418)
+.
T Consensus 178 ~~ 179 (312)
T 4gcm_A 178 DE 179 (312)
T ss_dssp SS
T ss_pred cc
Confidence 75
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-26 Score=214.02 Aligned_cols=185 Identities=18% Similarity=0.307 Sum_probs=124.9
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|+ ++||+|||||+||++||..|++.|++++|||+.. .||.+.. + ++........+..+ .......++
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~~~~---G-~~~~~~~i~~~~g~-------~~~i~~~~l 68 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGVAAG---G-QLTTTTIIENFPGF-------PNGIDGNEL 68 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGCCTT---C-GGGGSSEECCSTTC-------TTCEEHHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcccC---C-CcCChHHhhhccCC-------cccCCHHHH
Confidence 65 4899999999999999999999999999999964 4443322 0 11111111111111 122345678
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
..++.+.+.+++. .+.. ..+....... ..+.+.+.+. .++.||+||+|||
T Consensus 69 ~~~~~~~~~~~~~--~~~~-~~v~~~~~~~----------------------~~~~~~~~~~-----~~~~~~~liiATG 118 (314)
T 4a5l_A 69 MMNMRTQSEKYGT--TIIT-ETIDHVDFST----------------------QPFKLFTEEG-----KEVLTKSVIIATG 118 (314)
T ss_dssp HHHHHHHHHHTTC--EEEC-CCEEEEECSS----------------------SSEEEEETTC-----CEEEEEEEEECCC
T ss_pred HHHHHHHHhhcCc--EEEE-eEEEEeecCC----------------------CceEEEECCC-----eEEEEeEEEEccc
Confidence 8888888888886 4443 4555555444 3455555554 5899999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+ .|+.|++| |.+.+....++...++... ....++++|+|||+|.+|+|+|..|...|.. |+++.|..
T Consensus 119 ~---~~~~~~ip---G~~~~~~~~~~~~~~~~~~----~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~---Vt~v~~~~ 185 (314)
T 4a5l_A 119 A---TAKRMHVP---GEDKYWQNGVSACAICDGA----VPIFRNKVLMVVGGGDAAMEEALHLTKYGSK---VIILHRRD 185 (314)
T ss_dssp E---EECCCCCT---THHHHBTTTEESCHHHHTT----SGGGTTSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSS
T ss_pred c---cccccCCC---ccccccccceeeehhhhhh----hhhcCCCeEEEECCChHHHHHHHHHHHhCCe---eeeecccc
Confidence 5 47777777 7665443344433322211 2345689999999999999999999998865 99999876
Q ss_pred c
Q 014821 240 H 240 (418)
Q Consensus 240 ~ 240 (418)
.
T Consensus 186 ~ 186 (314)
T 4a5l_A 186 A 186 (314)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=232.49 Aligned_cols=276 Identities=17% Similarity=0.187 Sum_probs=185.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|.++||+|||||++|+++|..|++. +.+|+|||+++.++. .. ..+ | +.+. ....+....
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~--~~----~~l--p---~~~~--------g~~~~~~~~ 94 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF--AN----CGL--P---YYIG--------GVITERQKL 94 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB--CG----GGH--H---HHHT--------TSSCCGGGG
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc--cC----CCC--c---hhhc--------CcCCChHHh
Confidence 5578999999999999999999998 889999999876541 11 000 0 0000 011122234
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+..+++++.+++++ .++++++|++++... + .+.+.+..++...++.||+||+||
T Consensus 95 ~~~~~~~~~~~~gi--~v~~~~~V~~id~~~----------------------~--~v~v~~~~~g~~~~~~~d~lviAt 148 (588)
T 3ics_A 95 LVQTVERMSKRFNL--DIRVLSEVVKINKEE----------------------K--TITIKNVTTNETYNEAYDVLILSP 148 (588)
T ss_dssp BSSCHHHHHHHTTC--EEECSEEEEEEETTT----------------------T--EEEEEETTTCCEEEEECSEEEECC
T ss_pred hccCHHHHHHhcCc--EEEECCEEEEEECCC----------------------C--EEEEeecCCCCEEEEeCCEEEECC
Confidence 55677888888898 788999999998765 3 344443223445689999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhh-hhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA-AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
|+ .|..|+++ |.+...+ +++...+....... .-....+++|+|||+|.+|+|+|..|...+.. |+++.+
T Consensus 149 G~---~p~~p~i~---G~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~ 218 (588)
T 3ics_A 149 GA---KPIVPSIP---GIEEAKA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIE---VTLVEM 218 (588)
T ss_dssp CE---EECCCCCT---TTTTCTT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECS
T ss_pred CC---CCCCCCCC---CcccCCC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCe---EEEEec
Confidence 95 47777777 6633322 44433222111000 00124689999999999999999999998765 999998
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+. +.+... . .
T Consensus 219 ~~~-~l~~~~-------~----~--------------------------------------------------------- 229 (588)
T 3ics_A 219 ANQ-VMPPID-------Y----E--------------------------------------------------------- 229 (588)
T ss_dssp SSS-SCTTSC-------H----H---------------------------------------------------------
T ss_pred CCc-ccccCC-------H----H---------------------------------------------------------
Confidence 875 333222 0 0
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEec--CcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~ 394 (418)
+.+.+.+.+++.+|+++.+. +..++. ++|.+++|++ +++|.||+|||++++..+++.++...
T Consensus 230 --------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~-i~~D~Vi~a~G~~p~~~~l~~~g~~~------ 294 (588)
T 3ics_A 230 --------MAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSV-IQTDMLILAIGVQPESSLAKGAGLAL------ 294 (588)
T ss_dssp --------HHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCE-EECSEEEECSCEEECCHHHHHTTCCB------
T ss_pred --------HHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCE-EEcCEEEEccCCCCChHHHHhcCceE------
Confidence 01112234566678888875 777765 5699999998 99999999999999965433322221
Q ss_pred CCCCCCccceeeeeeccCcccc
Q 014821 395 GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.++.+.++..+.++.||||.
T Consensus 295 -~~~g~i~vd~~~~t~~~~IyA 315 (588)
T 3ics_A 295 -GVRGTIKVNEKFQTSDPHIYA 315 (588)
T ss_dssp -CGGGCBCCCTTSBCSSTTEEE
T ss_pred -cCCCCEEECCccccCCCCEEE
Confidence 335677787777778999985
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=220.56 Aligned_cols=263 Identities=17% Similarity=0.148 Sum_probs=174.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCc--eEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFH--PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~--v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++||||||||++|+++|..|++.|.+ |+|||+.+..+..... + +. .+. ........+.
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~------l--~~---~~~---------~~~~~~~~~~ 68 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP------L--SK---EYL---------AREKTFERIC 68 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG------G--GT---TTT---------TTSSCSGGGB
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc------C--CH---HHH---------cCCCCHHHhc
Confidence 47999999999999999999999886 9999998644211000 0 00 000 0000111222
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+......+.++ .+..+++|..++... +.|.+.++ ..+.||+||+|||+
T Consensus 69 ~~~~~~~~~~~i--~~~~~~~v~~id~~~------------------------~~v~~~~g-----~~~~~d~lvlAtG~ 117 (415)
T 3lxd_A 69 IRPAQFWEDKAV--EMKLGAEVVSLDPAA------------------------HTVKLGDG-----SAIEYGKLIWATGG 117 (415)
T ss_dssp SSCHHHHHHTTE--EEEETCCEEEEETTT------------------------TEEEETTS-----CEEEEEEEEECCCE
T ss_pred cCCHHHHHHCCc--EEEeCCEEEEEECCC------------------------CEEEECCC-----CEEEeeEEEEccCC
Confidence 223344456787 788888999998765 56777666 58999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhh--hhhhhcC-CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--AAANLVK-GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
.|..|+++ |.+. ..+.. +....+. ....... +++|+|||+|.+|+|+|..|...+.. |+++.+
T Consensus 118 ---~~~~~~i~---g~~~--~~v~~---~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~ 183 (415)
T 3lxd_A 118 ---DPRRLSCV---GADL--AGVHA---VRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEA 183 (415)
T ss_dssp ---ECCCCBTT---SSCC--BTEEC---CCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEES
T ss_pred ---ccCCCCCC---Cccc--cCEEE---EcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEec
Confidence 47777777 6542 12222 1111111 1122334 89999999999999999999998765 999999
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+.++..... ..
T Consensus 184 ~~~~l~~~~~-----------~~--------------------------------------------------------- 195 (415)
T 3lxd_A 184 LPRVLARVAG-----------EA--------------------------------------------------------- 195 (415)
T ss_dssp SSSTTTTTSC-----------HH---------------------------------------------------------
T ss_pred CCchhhhhcC-----------HH---------------------------------------------------------
Confidence 8863322111 00
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.+.+++.+|+++.+. +..+..+ +|.+++|++ +++|.||+|+|++|+..+ +..
T Consensus 196 --------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~-i~aD~Vv~a~G~~p~~~l--------~~~ 258 (415)
T 3lxd_A 196 --------LSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSV-IPADIVIVGIGIVPCVGA--------LIS 258 (415)
T ss_dssp --------HHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCE-EECSEEEECSCCEESCHH--------HHH
T ss_pred --------HHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCE-EEcCEEEECCCCccChHH--------HHh
Confidence 11112345566778888775 7777643 478889998 999999999999999543 344
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..+... +++.++..+.++.||||.
T Consensus 259 ~gl~~~-~gi~vd~~~~t~~~~iyA 282 (415)
T 3lxd_A 259 AGASGG-NGVDVDEFCRTSLTDVYA 282 (415)
T ss_dssp TTCCCS-SSEECCTTCBCSSTTEEE
T ss_pred CCCCcC-CCEEECCCCCcCCCCEEE
Confidence 444333 347787777778999985
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=224.59 Aligned_cols=268 Identities=16% Similarity=0.135 Sum_probs=177.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
+|||||||++|+++|..|++.|. +|+|||+++..+... .. .|. .+....... ...... .
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~------~~--l~~---~~~~~~~~~--~~~~~~------~ 62 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN------CA--LPY---VIGEVVEDR--RYALAY------T 62 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCG------GG--HHH---HHTTSSCCG--GGTBCC------C
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCc------ch--hHH---HHcCCccch--hhhhhc------C
Confidence 69999999999999999999874 799999976443210 00 000 000000000 000000 1
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.+...+++++ .++.+++|+.++... ..+.+....++....+.||+||||||+
T Consensus 63 ~~~~~~~~~i--~~~~~~~V~~id~~~------------------------~~~~~~~~~~~~~~~~~yd~lVIATGs-- 114 (437)
T 4eqs_A 63 PEKFYDRKQI--TVKTYHEVIAINDER------------------------QTVSVLNRKTNEQFEESYDKLILSPGA-- 114 (437)
T ss_dssp HHHHHHHHCC--EEEETEEEEEEETTT------------------------TEEEEEETTTTEEEEEECSEEEECCCE--
T ss_pred HHHHHHhcCC--EEEeCCeEEEEEccC------------------------cEEEEEeccCCceEEEEcCEEEECCCC--
Confidence 1233455677 788889999998765 345555555566678999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
.|+.|+++ +...+.. ++....... .......++++++|||+|.+|+|+|..+...+.. |+++.+.++.
T Consensus 115 -~p~~p~i~---g~~~~~~---~~~~~~~~l-~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l- 182 (437)
T 4eqs_A 115 -SANSLGFE---SDITFTL---RNLEDTDAI-DQFIKANQVDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKI- 182 (437)
T ss_dssp -EECCCCCC---CTTEECC---SSHHHHHHH-HHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCC-
T ss_pred -cccccccc---CceEEee---ccHHHHHHH-HHhhhccCCcEEEEECCccchhhhHHHHHhcCCc---ceeeeeeccc-
Confidence 47788777 6433211 110000000 0011234578999999999999999999999875 9999998863
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
++...
T Consensus 183 l~~~d--------------------------------------------------------------------------- 187 (437)
T 4eqs_A 183 NKLMD--------------------------------------------------------------------------- 187 (437)
T ss_dssp STTSC---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 33322
Q ss_pred ccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-CCCCC
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEK 400 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 400 (418)
+...+.+.+.+++.+|+++.+. +..++.+.+.+++|++ +++|.||+|+|.+|+..+++ ...+. +.++.
T Consensus 188 -~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~-~~~D~vl~a~G~~Pn~~~~~--------~~gl~~~~~G~ 257 (437)
T 4eqs_A 188 -ADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKV-EHYDMIIEGVGTHPNSKFIE--------SSNIKLDRKGF 257 (437)
T ss_dssp -GGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCE-EECSEEEECCCEEESCGGGT--------TSSCCCCTTSC
T ss_pred -chhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeE-EeeeeEEEEeceecCcHHHH--------hhhhhhccCCc
Confidence 0011223345566678888886 8889999999999999 99999999999999854333 33332 44677
Q ss_pred ccceeeeeeccCcccc
Q 014821 401 LPLYRSAHIYIDTLTY 416 (418)
Q Consensus 401 ~~~~~~~~~~~~~~~~ 416 (418)
+.++..+.++.||||.
T Consensus 258 I~vd~~~~Ts~p~IyA 273 (437)
T 4eqs_A 258 IPVNDKFETNVPNIYA 273 (437)
T ss_dssp EECCTTCBCSSTTEEE
T ss_pred EecCCCccCCCCCEEE
Confidence 8888888889999995
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=222.02 Aligned_cols=268 Identities=18% Similarity=0.239 Sum_probs=168.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|+++||+|||||++|+++|..|++. +.+|+|||+.+.++.... ..|.. .........
T Consensus 1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~--------~~p~~-------------~~~~~~~~~ 59 (449)
T 3kd9_A 1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC--------GIPYV-------------VEGLSTPDK 59 (449)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---------------------------------------
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc--------CCccc-------------cCCCCCHHH
Confidence 8889999999999999999999997 789999999875542110 00000 000011122
Q ss_pred HHHH-HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 79 VLDY-IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 79 ~~~~-l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
+..+ .+.+.+++++ .+.++++|++++... +.|.+.++ ..++.||+||+|
T Consensus 60 ~~~~~~~~~~~~~gi--~v~~~~~v~~i~~~~------------------------~~v~~~~g----~~~~~~d~lviA 109 (449)
T 3kd9_A 60 LMYYPPEVFIKKRGI--DLHLNAEVIEVDTGY------------------------VRVRENGG----EKSYEWDYLVFA 109 (449)
T ss_dssp ------CTHHHHTTC--EEETTCEEEEECSSE------------------------EEEECSSS----EEEEECSEEEEC
T ss_pred hhhcCHHHHHHhcCc--EEEecCEEEEEecCC------------------------CEEEECCc----eEEEEcCEEEEC
Confidence 2222 2334467788 789988999987544 66654333 257999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhh--hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAAN--LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
||+ .|..|+++ |.+.. .++......... ..... ...+++++|||+|.+|+|+|..|...+.. |+++
T Consensus 110 tG~---~p~~p~i~---G~~~~--~v~~~~~~~~~~-~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv 177 (449)
T 3kd9_A 110 NGA---SPQVPAIE---GVNLK--GVFTADLPPDAL-AIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN---VTMI 177 (449)
T ss_dssp CCE---EECCCSCB---TTTST--TEECSCSTHHHH-HHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEE
T ss_pred CCC---CCCCCCCC---CCCCC--CEEEeCCHHHHH-HHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCe---EEEE
Confidence 995 47777777 65421 133222111110 00111 12678999999999999999999998765 9999
Q ss_pred EecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccc
Q 014821 236 YRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFL 315 (418)
Q Consensus 236 ~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (418)
.|.+.++..... ..
T Consensus 178 ~~~~~~l~~~~~-----------~~------------------------------------------------------- 191 (449)
T 3kd9_A 178 VRGERVLRRSFD-----------KE------------------------------------------------------- 191 (449)
T ss_dssp ESSSSTTTTTSC-----------HH-------------------------------------------------------
T ss_pred EcCCccchhhcC-----------HH-------------------------------------------------------
Confidence 998863322122 00
Q ss_pred cccccccccccCcchhhhhccCcEEEeccC-ceeEecCc---EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 316 QELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~---v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.+.+++. |+++.+. +..++.++ ..+.+|++ +++|.||+|||++|+..+++.++...
T Consensus 192 ----------~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~-i~~D~Vv~a~G~~p~~~l~~~~gl~~--- 256 (449)
T 3kd9_A 192 ----------VTDILEEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGE-YKAELVILATGIKPNIELAKQLGVRI--- 256 (449)
T ss_dssp ----------HHHHHHHHHTTT-SEEEESCCEEEEECSSSCCEEEETTEE-EECSEEEECSCEEECCHHHHHTTCCB---
T ss_pred ----------HHHHHHHHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCCE-EECCEEEEeeCCccCHHHHHhCCccC---
Confidence 001122344555 7777765 66666542 34567877 99999999999999965433322221
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.++.+.++..+.++.||||.
T Consensus 257 ----~~~G~i~vd~~~~t~~~~IyA 277 (449)
T 3kd9_A 257 ----GETGAIWTNEKMQTSVENVYA 277 (449)
T ss_dssp ----CTTSSBCCCTTCBCSSTTEEE
T ss_pred ----CCCCCEEECCCCccCCCCEEE
Confidence 345678888777789999985
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=218.82 Aligned_cols=269 Identities=13% Similarity=0.130 Sum_probs=173.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|. +||+|||||++|+++|..|++. +.+|+|||+++.+|..... .+ .+. ...+.....
T Consensus 1 M~-~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~-~~-----------~~~--------~~~~~~~~~ 59 (452)
T 3oc4_A 1 MS-LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGG-LS-----------AYF--------NHTINELHE 59 (452)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC-----------------------------------
T ss_pred CC-CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCcc-ch-----------hhh--------cCCCCCHHH
Confidence 54 6999999999999999999998 8899999998866521000 00 000 000000011
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+..+......++++ .++++++|++++... +.+.+... +...++.||+||+||
T Consensus 60 ~~~~~~~~~~~~gi--~~~~~~~V~~id~~~----------------------~~v~v~~~----~~~~~~~~d~lviAt 111 (452)
T 3oc4_A 60 ARYITEEELRRQKI--QLLLNREVVAMDVEN----------------------QLIAWTRK----EEQQWYSYDKLILAT 111 (452)
T ss_dssp -CCCCHHHHHHTTE--EEECSCEEEEEETTT----------------------TEEEEEET----TEEEEEECSEEEECC
T ss_pred hhcCCHHHHHHCCC--EEEECCEEEEEECCC----------------------CEEEEEec----CceEEEEcCEEEECC
Confidence 11112333456777 788899999998765 44544411 233689999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+ .|..|+++ |.+. ..+++...+..... .......+++++|||+|.+|+|+|..|...+.. |+++.|.
T Consensus 112 G~---~p~~p~i~---g~~~--~~v~~~~~~~~~~~-~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~ 179 (452)
T 3oc4_A 112 GA---SQFSTQIR---GSQT--EKLLKYKFLSGALA-AVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKT---VHVFESL 179 (452)
T ss_dssp CC---CBCCCCCB---TTTC--TTEEEGGGCC-----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred Cc---ccCCCCCC---CCCC--CCEEEeCCHHHHHH-HHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEEcc
Confidence 95 57777777 6543 23555443322110 012335689999999999999999999988765 9999998
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+.++..... . .
T Consensus 180 ~~~l~~~~d-------~----~---------------------------------------------------------- 190 (452)
T 3oc4_A 180 ENLLPKYFD-------K----E---------------------------------------------------------- 190 (452)
T ss_dssp SSSSTTTCC-------H----H----------------------------------------------------------
T ss_pred CccccccCC-------H----H----------------------------------------------------------
Confidence 863322121 0 0
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhh
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL 393 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~ 393 (418)
+.+.+.+.+++.+|+++.+. +..++ +++ |.+++| + +++|.||+|||++|+..+++ ..+
T Consensus 191 -------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~-i~aD~Vv~A~G~~p~~~~l~--------~~~ 253 (452)
T 3oc4_A 191 -------MVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-E-ISCDSGIFALNLHPQLAYLD--------KKI 253 (452)
T ss_dssp -------HHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-E-EEESEEEECSCCBCCCSSCC--------TTS
T ss_pred -------HHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-E-EEeCEEEECcCCCCChHHHH--------hhh
Confidence 11122345567788998876 77776 333 556666 6 99999999999999965432 111
Q ss_pred cCCCCCCccceeeeeeccCcccc
Q 014821 394 AGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.-+.++.+.++..+.++.||||.
T Consensus 254 ~~~~~g~i~vd~~~~t~~~~IyA 276 (452)
T 3oc4_A 254 QRNLDQTIAVDAYLQTSVPNVFA 276 (452)
T ss_dssp CBCTTSCBCCCTTCBCSSTTEEE
T ss_pred ccCCCCCEEECcCccCCCCCEEE
Confidence 11456778888877788999985
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=219.26 Aligned_cols=264 Identities=14% Similarity=0.163 Sum_probs=171.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
+++|+|||||++|+++|..|++.|. +|+|||+.+..... . + .+ +.. +....... ..+.
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~--~--~--~l--~~~---~l~~~~~~---------~~~~ 60 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQ--R--P--PL--SKA---YLKSGGDP---------NSLM 60 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBC--S--G--GG--GTG---GGGSCCCT---------TSSB
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCC--C--c--cC--CHH---HHCCCCCH---------HHcc
Confidence 4789999999999999999999998 89999998743211 0 0 00 000 00000000 0111
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+......++++ .+.. ++|+.++... ..|.+.++ .++.||+||+|||+
T Consensus 61 ~~~~~~~~~~~i--~~~~-~~v~~id~~~------------------------~~v~~~~g-----~~~~~d~lvlAtG~ 108 (404)
T 3fg2_P 61 FRPEKFFQDQAI--ELIS-DRMVSIDREG------------------------RKLLLASG-----TAIEYGHLVLATGA 108 (404)
T ss_dssp SSCHHHHHHTTE--EEEC-CCEEEEETTT------------------------TEEEESSS-----CEEECSEEEECCCE
T ss_pred CCCHHHHHhCCC--EEEE-EEEEEEECCC------------------------CEEEECCC-----CEEECCEEEEeeCC
Confidence 112233445677 6777 8999998665 45777666 58999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|..|+++ |.+. ..++......+. .........+++++|||+|.+|+|+|..|...+.. |+++.+.+.
T Consensus 109 ---~p~~~~i~---g~~~--~~v~~~~~~~d~-~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~ 176 (404)
T 3fg2_P 109 ---RNRMLDVP---NASL--PDVLYLRTLDES-EVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLE---VDVVELAPR 176 (404)
T ss_dssp ---EECCCCST---TTTS--TTEECCSSHHHH-HHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred ---CccCCCCC---CCCC--CcEEEECCHHHH-HHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCCc
Confidence 47777777 6432 123321111110 01112344689999999999999999999988765 999999875
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccc
Q 014821 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (418)
Q Consensus 241 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (418)
++..... ..
T Consensus 177 ~~~~~~~-----------~~------------------------------------------------------------ 185 (404)
T 3fg2_P 177 VMARVVT-----------PE------------------------------------------------------------ 185 (404)
T ss_dssp TTTTTSC-----------HH------------------------------------------------------------
T ss_pred chhhccC-----------HH------------------------------------------------------------
Confidence 4322111 00
Q ss_pred ccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc
Q 014821 321 CLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (418)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~ 394 (418)
+.+.+.+.+++.+|+++.+. +..++.+ +|.+++|++ +++|.||+|||++++..++ +...+
T Consensus 186 -----~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~-i~aD~Vv~a~G~~p~~~l~--------~~~gl 251 (404)
T 3fg2_P 186 -----ISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNT-LPCDLVVVGVGVIPNVEIA--------AAAGL 251 (404)
T ss_dssp -----HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCE-EECSEEEECCCEEECCHHH--------HHTTC
T ss_pred -----HHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCE-EEcCEEEECcCCccCHHHH--------HhCCC
Confidence 11122345566788888885 7777643 478899998 9999999999999995443 33333
Q ss_pred CCCCCCccceeeeeeccCcccc
Q 014821 395 GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
...++ +.++..+.++.||||.
T Consensus 252 ~~~~G-i~vd~~~~t~~~~iya 272 (404)
T 3fg2_P 252 PTAAG-IIVDQQLLTSDPHISA 272 (404)
T ss_dssp CBSSS-EEECTTSBCSSTTEEE
T ss_pred CCCCC-EEECCCcccCCCCEEE
Confidence 23333 7777777778999985
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=227.58 Aligned_cols=270 Identities=19% Similarity=0.203 Sum_probs=176.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+||+|||||++|+++|..|++. +.+|+|||+++.++.. . ..+ | +.+. ....+....+.+
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~--~----~~l--~---~~~~--------~~~~~~~~~~~~ 62 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA--N----CGL--P---YHIS--------GEIAQRSALVLQ 62 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC--G----GGH--H---HHHT--------SSSCCGGGGBCC
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc--c----cCc--h---HHhc--------CCcCChHHhhcc
Confidence 7899999999999999999997 7899999998765411 0 000 0 0000 011112234455
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++..+.+++++ .++++++|++++... + .+.+.+..++...++.||+||+|||+
T Consensus 63 ~~~~~~~~~~i--~~~~~~~V~~id~~~----------------------~--~v~~~~~~~g~~~~~~~d~lviAtG~- 115 (565)
T 3ntd_A 63 TPESFKARFNV--EVRVKHEVVAIDRAA----------------------K--LVTVRRLLDGSEYQESYDTLLLSPGA- 115 (565)
T ss_dssp CHHHHHHHHCC--EEETTEEEEEEETTT----------------------T--EEEEEETTTCCEEEEECSEEEECCCE-
T ss_pred CHHHHHHhcCc--EEEECCEEEEEECCC----------------------C--EEEEEecCCCCeEEEECCEEEECCCC-
Confidence 66777777888 788999999998765 3 34444433344568999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhh--hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAA--NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|+++ |.+.. .+++...+.... .... ....+++|+|||+|.+|+|+|..|...+.. |+++.|.+
T Consensus 116 --~p~~p~ip---G~~~~--~v~~~~~~~~~~-~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~ 184 (565)
T 3ntd_A 116 --APIVPPIP---GVDNP--LTHSLRNIPDMD-RILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIK---TTLLELAD 184 (565)
T ss_dssp --EECCCCCT---TCCST--TEECCSSHHHHH-HHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSS
T ss_pred --CCCCCCCC---CCCCC--CEEEeCCHHHHH-HHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCc---EEEEEcCC
Confidence 47777777 66432 233322211111 0000 224578999999999999999999988765 99999987
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
. +.+... ..+.
T Consensus 185 ~-~l~~~~-----------~~~~--------------------------------------------------------- 195 (565)
T 3ntd_A 185 Q-VMTPVD-----------REMA--------------------------------------------------------- 195 (565)
T ss_dssp S-SCTTSC-----------HHHH---------------------------------------------------------
T ss_pred c-cchhcC-----------HHHH---------------------------------------------------------
Confidence 5 333222 0000
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEec---------------------C--cEEEcCCceeeeccEEEEccCCC
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE---------------------D--GIVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~---------------------~--~v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
..+.+.+++.+|+++.+. +..++. + .+.+++|++ +++|.||+|||++
T Consensus 196 --------~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~ 266 (565)
T 3ntd_A 196 --------GFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGEL-LETDLLIMAIGVR 266 (565)
T ss_dssp --------HHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCE-EEESEEEECSCEE
T ss_pred --------HHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCE-EEcCEEEECcCCc
Confidence 011223445566666654 555543 2 256788888 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++..+.+ ...+. +.++.+.++..+.++.||||.
T Consensus 267 p~~~l~~--------~~g~~~~~~g~i~vd~~~~t~~~~IyA 300 (565)
T 3ntd_A 267 PETQLAR--------DAGLAIGELGGIKVNAMMQTSDPAIYA 300 (565)
T ss_dssp ECCHHHH--------HHTCCBCTTSSBCCCTTCBCSSTTEEE
T ss_pred cchHHHH--------hCCcccCCCCCEEECCCcccCCCCEEE
Confidence 9954433 22222 346778888777788999986
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=225.65 Aligned_cols=278 Identities=15% Similarity=0.166 Sum_probs=170.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCC---CC-C
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDS---VT-T 71 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~---~~-~ 71 (418)
.++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+......+ ....+.+... .. .
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH 88 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence 3589999999999999999999999999999996 78998875 22222111100000 0011111100 00 0
Q ss_pred CCCChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 72 DFPDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 72 ~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
...+...+..+ +....++.++ .+..+ .+..++ . +.+.|...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~--~----------------------~~~~v~~~~ 141 (479)
T 2hqm_A 89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKV--DVVFG-WARFNK--D----------------------GNVEVQKRD 141 (479)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTE--EEEEE-EEEECT--T----------------------SCEEEEESS
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEee--C----------------------CEEEEEeCC
Confidence 11122233222 2333344455 44443 344432 1 335565433
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCC-CCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIP-EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a 219 (418)
+ ...++.||+||+|||+ .|..| +++ |.+. ++++..+.. ....+++++|||+|.+|+|+|
T Consensus 142 g---~~~~~~~d~lviAtGs---~p~~p~~i~---g~~~----~~~~~~~~~-------l~~~~~~vvViGgG~ig~E~A 201 (479)
T 2hqm_A 142 N---TTEVYSANHILVATGG---KAIFPENIP---GFEL----GTDSDGFFR-------LEEQPKKVVVVGAGYIGIELA 201 (479)
T ss_dssp S---CCEEEEEEEEEECCCE---EECCCTTST---TGGG----SBCHHHHHH-------CSSCCSEEEEECSSHHHHHHH
T ss_pred C---cEEEEEeCEEEEcCCC---CCCCCCCCC---Cccc----ccchHHHhc-------ccccCCeEEEECCCHHHHHHH
Confidence 3 2247999999999995 47777 777 6531 222222211 123578999999999999999
Q ss_pred HHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014821 220 MECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKK 299 (418)
Q Consensus 220 ~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (418)
..|...+.. |+++.+.+.. ++... . .+
T Consensus 202 ~~l~~~g~~---Vtlv~~~~~~-l~~~d-------~----~~-------------------------------------- 228 (479)
T 2hqm_A 202 GVFHGLGSE---THLVIRGETV-LRKFD-------E----CI-------------------------------------- 228 (479)
T ss_dssp HHHHHTTCE---EEEECSSSSS-CTTSC-------H----HH--------------------------------------
T ss_pred HHHHHcCCc---eEEEEeCCcc-ccccC-------H----HH--------------------------------------
Confidence 999988765 9999998753 33322 0 00
Q ss_pred hhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC------cEEEcCC-ceeeeccEEEEc
Q 014821 300 KHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED------GIVVDGQ-TTPLKTDLVILA 371 (418)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~------~v~~~~g-~~~~~~D~Vi~a 371 (418)
.+.+.+.+++.+|+++.+. +..+..+ .|.+++| ++ +++|.||+|
T Consensus 229 ---------------------------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~-i~~D~vv~a 280 (479)
T 2hqm_A 229 ---------------------------QNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSI-DDVDELIWT 280 (479)
T ss_dssp ---------------------------HHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEE-EEESEEEEC
T ss_pred ---------------------------HHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEE-EEcCEEEEC
Confidence 0111234455568888875 7677532 3677888 67 999999999
Q ss_pred cCCCCCcch-hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKL-KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|++|+..+ ++. ..+. +.++.+.++..+.++.|+||.
T Consensus 281 ~G~~p~~~l~l~~--------~gl~~~~~G~i~vd~~~~t~~~~IyA 319 (479)
T 2hqm_A 281 IGRKSHLGMGSEN--------VGIKLNSHDQIIADEYQNTNVPNIYS 319 (479)
T ss_dssp SCEEECCCSSGGG--------GTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred CCCCCccccChhh--------cCceECCCCCEeECCCCccCCCCEEE
Confidence 999999533 222 2222 345778888777889999985
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-26 Score=222.63 Aligned_cols=265 Identities=13% Similarity=0.196 Sum_probs=172.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCc--eEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH--PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~--v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|. ++|+|||||++|+++|..|++.|.+ |+|||+.+..+.. . +. + +. .+........ .. ..
T Consensus 1 M~-~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~--~--~~--l--~~---~~~~g~~~~~-~~-~~---- 62 (410)
T 3ef6_A 1 MA-THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD--R--PS--L--SK---AVLDGSLERP-PI-LA---- 62 (410)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC--S--GG--G--GT---HHHHTSSSSC-CB-SS----
T ss_pred CC-CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC--C--cc--c--cH---HHhCCCCCHH-Hh-cC----
Confidence 53 5999999999999999999999987 9999998754311 0 00 0 00 0000000000 00 11
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
......++++ ++.++++|+.++... +.|.+.++ .++.||+||+||
T Consensus 63 ----~~~~~~~~~i--~~~~~~~v~~id~~~------------------------~~v~~~~g-----~~~~~d~lvlAt 107 (410)
T 3ef6_A 63 ----EADWYGEARI--DMLTGPEVTALDVQT------------------------RTISLDDG-----TTLSADAIVIAT 107 (410)
T ss_dssp ----CTTHHHHTTC--EEEESCCEEEEETTT------------------------TEEEETTS-----CEEECSEEEECC
T ss_pred ----CHHHHHHCCC--EEEeCCEEEEEECCC------------------------CEEEECCC-----CEEECCEEEEcc
Confidence 1122345677 788888999998765 56777666 589999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+. |..|+++ |.+. ..+++...+.+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+.
T Consensus 108 G~~---p~~~~ip---G~~~--~~v~~~~~~~d~~-~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtvv~~~ 175 (410)
T 3ef6_A 108 GSR---ARTMALP---GSQL--PGVVTLRTYGDVQ-VLRDSWTSATRLLIVGGGLIGCEVATTARKLGLS---VTILEAG 175 (410)
T ss_dssp CEE---ECCCCCT---TTTS--TTEECCCSHHHHH-HHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred CCc---ccCCCCC---Cccc--cceEEeccHHHHH-HHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 954 7777777 6541 2233322211110 0112344689999999999999999999998765 9999998
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+.++..... ..
T Consensus 176 ~~~l~~~~~-----------~~---------------------------------------------------------- 186 (410)
T 3ef6_A 176 DELLVRVLG-----------RR---------------------------------------------------------- 186 (410)
T ss_dssp SSSSHHHHC-----------HH----------------------------------------------------------
T ss_pred CccchhhcC-----------HH----------------------------------------------------------
Confidence 753211000 00
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhh
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL 393 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~ 393 (418)
+.+.+.+.+++.+|+++.+. +..++.+ +|.+++|++ +++|.||+|+|++++..+ +....
T Consensus 187 -------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~-i~aD~Vv~a~G~~p~~~l--------~~~~g 250 (410)
T 3ef6_A 187 -------IGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRS-FVADSALICVGAEPADQL--------ARQAG 250 (410)
T ss_dssp -------HHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCE-EECSEEEECSCEEECCHH--------HHHTT
T ss_pred -------HHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCE-EEcCEEEEeeCCeecHHH--------HHhCC
Confidence 01112234455678888775 7777654 488999998 999999999999999544 33333
Q ss_pred cCCCCCCccceeeeeeccCcccc
Q 014821 394 AGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+... +++.++..+.++.|+||.
T Consensus 251 l~~~-~gi~vd~~~~t~~~~IyA 272 (410)
T 3ef6_A 251 LACD-RGVIVDHCGATLAKGVFA 272 (410)
T ss_dssp CCBS-SSEECCTTSBCSSTTEEE
T ss_pred CccC-CeEEEccCeeECCCCEEE
Confidence 3233 447777777778999985
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-26 Score=227.20 Aligned_cols=277 Identities=13% Similarity=0.118 Sum_probs=167.4
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-cCCCCCCCCCCCCCCCh
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-FSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (418)
|. .+||+|||||++|+++|..|++.|.+|+|||+++.+||.|.. +.|...+......+. +...+.. ......
T Consensus 1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~----~~~~~~ 76 (466)
T 3l8k_A 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANV----KIPLDF 76 (466)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCS----CCCCCH
T ss_pred CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccC----CCCcCH
Confidence 54 589999999999999999999999999999988999999886 333322221111110 0000000 111122
Q ss_pred hHHH------------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 77 NQVL------------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 77 ~~~~------------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
..+. .++....++.++ .+.. .++..++.. .+.|...++
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~-g~v~~id~~------------------------~~~V~~~~g--- 126 (466)
T 3l8k_A 77 STVQDRKDYVQELRFKQHKRNMSQYETL--TFYK-GYVKIKDPT------------------------HVIVKTDEG--- 126 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTE--EEES-EEEEEEETT------------------------EEEEEETTS---
T ss_pred HHHHHHHHhheeccccchHHHHHHhCCC--EEEE-eEEEEecCC------------------------eEEEEcCCC---
Confidence 2222 222333333444 3444 466666533 366665544
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
...++.||+||+|||+ .|..|+++ |.+. ++++.++..... .....+++|+|||+|.+|+|+|..|..
T Consensus 127 ~~~~~~~d~lviAtG~---~p~~p~i~---G~~~----~~t~~~~~~~~~---~l~~~~~~vvViGgG~~g~e~A~~l~~ 193 (466)
T 3l8k_A 127 KEIEAETRYMIIASGA---ETAKLRLP---GVEY----CLTSDDIFGYKT---SFRKLPQDMVIIGAGYIGLEIASIFRL 193 (466)
T ss_dssp CEEEEEEEEEEECCCE---EECCCCCT---TGGG----SBCHHHHHSTTC---SCCSCCSEEEEECCSHHHHHHHHHHHH
T ss_pred cEEEEecCEEEECCCC---CccCCCCC---Cccc----eEeHHHHHHHHH---HHhhCCCeEEEECCCHHHHHHHHHHHH
Confidence 2233999999999995 57777777 6551 333322221000 012347899999999999999999999
Q ss_pred hcCCCCCeEEEEecCcccccCC-CCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 225 ANGLENPCTVLYRTEHWNIPDY-FPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 225 ~~~~~~~V~~~~r~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
.+.. |+++.|.+.. ++.. . . .+. +.
T Consensus 194 ~g~~---Vtlv~~~~~~-l~~~~d-------~----~~~----------------------------~~----------- 219 (466)
T 3l8k_A 194 MGVQ---THIIEMLDRA-LITLED-------Q----DIV----------------------------NT----------- 219 (466)
T ss_dssp TTCE---EEEECSSSSS-CTTSCC-------H----HHH----------------------------HH-----------
T ss_pred cCCE---EEEEEeCCcC-CCCCCC-------H----HHH----------------------------HH-----------
Confidence 8765 9999998753 3322 2 0 000 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec---Cc--EEEc--CCc--eeeeccEEEEccC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE---DG--IVVD--GQT--TPLKTDLVILATG 373 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~---~~--v~~~--~g~--~~~~~D~Vi~atG 373 (418)
+.+.++ |+++.+. +..++. ++ +.++ +|+ + +++|.||+|+|
T Consensus 220 --------------------------l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~-i~~D~vi~a~G 269 (466)
T 3l8k_A 220 --------------------------LLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKS-IFTNSVVLAAG 269 (466)
T ss_dssp --------------------------HHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEE-EEESCEEECCC
T ss_pred --------------------------HHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEE-EEcCEEEECcC
Confidence 011112 5555554 555554 33 5566 665 5 99999999999
Q ss_pred CCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 374 FKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++|+..+ .+....+. +.++ +.++..+.++.||||.
T Consensus 270 ~~p~~~l-------~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya 305 (466)
T 3l8k_A 270 RRPVIPE-------GAREIGLSISKTG-IVVDETMKTNIPNVFA 305 (466)
T ss_dssp EEECCCT-------TTGGGTCCBCSSS-BCCCTTCBCSSTTEEE
T ss_pred CCccccc-------chhhcCceeCCCC-EeECCCccCCCCCEEE
Confidence 9999542 02222222 3355 8888777779999995
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=214.81 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=169.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++||+|||||++|+++|..|++.|. +|+|||+.+.++.. . + ..+..... ... .. ..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~--~--~----~~~~~~~~-~~~--~~---~~-------- 64 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD--R--P----PLSKDFMA-HGD--AE---KI-------- 64 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC--S--G----GGGTHHHH-HCC--GG---GS--------
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCccc--C--C----CCCHHHhC-CCc--hh---hh--------
Confidence 4799999999999999999999887 59999997643210 0 0 00000000 000 00 00
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+++ ..+++++ .++++++|+.++... +.|.+.++ .++.||+||+|||+
T Consensus 65 -~~~-~~~~~~v--~~~~~~~v~~i~~~~------------------------~~v~~~~g-----~~~~~d~lviAtG~ 111 (408)
T 2gqw_A 65 -RLD-CKRAPEV--EWLLGVTAQSFDPQA------------------------HTVALSDG-----RTLPYGTLVLATGA 111 (408)
T ss_dssp -BCC-CTTSCSC--EEEETCCEEEEETTT------------------------TEEEETTS-----CEEECSEEEECCCE
T ss_pred -hHH-HHHHCCC--EEEcCCEEEEEECCC------------------------CEEEECCC-----CEEECCEEEECCCC
Confidence 001 2234566 778888899988655 56777665 47999999999995
Q ss_pred CCCCCCCCCC-CCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 161 FSDVPNIPEF-PPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 161 ~~~~p~~p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|++ + |.+ ..+++.....+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+.+
T Consensus 112 ---~~~~~~i~~---G~~---~~v~~~~~~~~~~-~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~ 178 (408)
T 2gqw_A 112 ---APRALPTLQ---GAT---MPVHTLRTLEDAR-RIQAGLRPQSRLLIVGGGVIGLELAATARTAGVH---VSLVETQP 178 (408)
T ss_dssp ---EECCCGGGT---TCS---SCEEECCSHHHHH-HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSS
T ss_pred ---CCCCCCccC---CCC---CcEEEECCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCC
Confidence 4777777 7 654 1244322211110 0111233589999999999999999999988765 99999987
Q ss_pred cccccC-CCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 240 HWNIPD-YFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 240 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
. ++++ .. . .
T Consensus 179 ~-~l~~~~~-------~----~---------------------------------------------------------- 188 (408)
T 2gqw_A 179 R-LMSRAAP-------A----T---------------------------------------------------------- 188 (408)
T ss_dssp S-SSTTTSC-------H----H----------------------------------------------------------
T ss_pred c-ccccccC-------H----H----------------------------------------------------------
Confidence 5 3332 11 0 0
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCC
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~ 397 (418)
+.+.+.+.+++.+|+++.+. +..++++.|++++|++ +++|.||+|+|++++..++ +...+...
T Consensus 189 -------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~l~--------~~~gl~~~ 252 (408)
T 2gqw_A 189 -------LADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTR-IAADMVVVGIGVLANDALA--------RAAGLACD 252 (408)
T ss_dssp -------HHHHHHHHHHHTTCEEEESCCEEEEETTEEEETTSCE-EECSEEEECSCEEECCHHH--------HHHTCCBS
T ss_pred -------HHHHHHHHHHHcCcEEEeCCEEEEEECCEEEECCCCE-EEcCEEEECcCCCccHHHH--------HhCCCCCC
Confidence 01112234566678888885 7777755788899988 9999999999999995443 33333233
Q ss_pred CCCccceeeeeeccCcccc
Q 014821 398 TEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (418)
+ ++.++..+.++.|+||.
T Consensus 253 ~-gi~Vd~~~~t~~~~IyA 270 (408)
T 2gqw_A 253 D-GIFVDAYGRTTCPDVYA 270 (408)
T ss_dssp S-SEECCTTCBCSSTTEEE
T ss_pred C-CEEECCCCccCCCCEEE
Confidence 3 37777777778999985
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=222.53 Aligned_cols=278 Identities=19% Similarity=0.234 Sum_probs=181.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCC-CCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYP-WPDSVTTDFP 74 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~-~~~~~~~~~~ 74 (418)
.++||+|||||++|+++|..|++.|.+|+|||++..+||.|.+ +.|...+......+ .+..+. |+.. ...++
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~-~~~~~ 120 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDM-TEKVV 120 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC-TTCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHH-Hhhhh
Confidence 3589999999999999999999999999999998779998875 22222211111100 011111 1111 12234
Q ss_pred ChhHHHHHHHH-------HH-----HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 75 DHNQVLDYIQS-------YA-----SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 75 ~~~~~~~~l~~-------~~-----~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
+..++..++.. .. ++.++ .+.+++++..++. +.|.+. +
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~--------------------------~~v~~~-g- 170 (523)
T 1mo9_A 121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNL--EYILNCPAKVIDN--------------------------HTVEAA-G- 170 (523)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTSCC--CEEESSCCEEEET--------------------------TEEEET-T-
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcccccCCc--EEEEeeEEEEeeC--------------------------CEEEEC-C-
Confidence 46677766653 33 55666 5665677777653 235553 3
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCC-CchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYS-DMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
..+.||+||+|||+ .|..|+++ |.+. ..++++.++. .. ....+++++|||+|.+|+|+|..
T Consensus 171 ----~~~~~d~lViATGs---~p~~p~i~---G~~~--~~v~~~~~~~~~l------~~~~g~~vvViGgG~~g~E~A~~ 232 (523)
T 1mo9_A 171 ----KVFKAKNLILAVGA---GPGTLDVP---GVNA--KGVFDHATLVEEL------DYEPGSTVVVVGGSKTAVEYGCF 232 (523)
T ss_dssp ----EEEEBSCEEECCCE---ECCCCCST---TTTS--BTEEEHHHHHHHC------CSCCCSEEEEECCSHHHHHHHHH
T ss_pred ----EEEEeCEEEECCCC---CCCCCCCC---Cccc--CcEeeHHHHHHHH------HhcCCCeEEEECCCHHHHHHHHH
Confidence 57999999999995 47777777 6643 1245443322 11 11224999999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
|...+.. |+++.+.+. +++... . .
T Consensus 233 l~~~G~~---Vtlv~~~~~-~l~~~~-------~----~----------------------------------------- 256 (523)
T 1mo9_A 233 FNATGRR---TVMLVRTEP-LKLIKD-------N----E----------------------------------------- 256 (523)
T ss_dssp HHHTTCE---EEEECSSCT-TTTCCS-------H----H-----------------------------------------
T ss_pred HHHcCCe---EEEEEecCc-cccccc-------H----H-----------------------------------------
Confidence 9988765 999999875 333221 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc------EEEcCCc-eeeeccEEEEc
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG------IVVDGQT-TPLKTDLVILA 371 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~------v~~~~g~-~~~~~D~Vi~a 371 (418)
+...+.+.+++.+|+++.+. +..+.. ++ |.+++|+ + +++|.||+|
T Consensus 257 ------------------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~-i~aD~Vv~A 311 (523)
T 1mo9_A 257 ------------------------TRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMR-IETDFVFLG 311 (523)
T ss_dssp ------------------------HHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEE-EECSCEEEC
T ss_pred ------------------------HHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEE-EEcCEEEEC
Confidence 00112234556678888775 666653 33 5667887 6 999999999
Q ss_pred cCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
||++|+... ++....+. +.++.+.++..+.++.|+||.
T Consensus 312 ~G~~p~~~~-------~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 350 (523)
T 1mo9_A 312 LGEQPRSAE-------LAKILGLDLGPKGEVLVNEYLQTSVPNVYA 350 (523)
T ss_dssp CCCEECCHH-------HHHHHTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred cCCccCCcc-------CHHHcCCccCCCCCEEECCCCccCCCCEEE
Confidence 999999541 23333332 346778888777778999985
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=223.28 Aligned_cols=281 Identities=12% Similarity=0.136 Sum_probs=174.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc------ccCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY------QFSDYPWPDSVTTDF 73 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~ 73 (418)
.++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.. +.|...+......+ .+..+.++.. ...
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~--~~~ 82 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS--EVR 82 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES--CEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC--CCc
Confidence 4589999999999999999999999999999998899999876 23322211111000 1111111100 001
Q ss_pred CChhHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+...+.. .+....+++++ .+..++ +..++ . +.+.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~-~~~~~--~----------------------~~~~v~~~~g- 134 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKV--VHVNGY-GKITG--K----------------------NQVTATKADG- 134 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEEEE--T----------------------TEEEEECTTS-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEec--C----------------------CEEEEEecCC-
Confidence 11222222 22444555676 566644 33443 2 3356654431
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
...++.||+||+|||+. |..|+++ |.+.. .++++.++.... ..+++|+|||+|.+|+|+|..|
T Consensus 135 --g~~~~~~d~lViAtGs~---p~~p~i~---g~~~~--~v~t~~~~~~~~-------~~~~~vvViGgG~~g~E~A~~l 197 (474)
T 1zmd_A 135 --GTQVIDTKNILIATGSE---VTPFPGI---TIDED--TIVSSTGALSLK-------KVPEKMVVIGAGVIGVELGSVW 197 (474)
T ss_dssp --CEEEEEEEEEEECCCEE---ECCCTTC---CCCSS--SEECHHHHTTCS-------SCCSEEEEECCSHHHHHHHHHH
T ss_pred --CcEEEEeCEEEECCCCC---CCCCCCC---CCCcC--cEEcHHHHhhcc-------ccCceEEEECCCHHHHHHHHHH
Confidence 22579999999999954 6777666 65421 355554443322 3468999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCccccc-CCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIP-DYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
...+.. |+++.+++. ++| ... . .+
T Consensus 198 ~~~g~~---Vtlv~~~~~-~l~~~~~-------~----~~---------------------------------------- 222 (474)
T 1zmd_A 198 QRLGAD---VTAVEFLGH-VGGVGID-------M----EI---------------------------------------- 222 (474)
T ss_dssp HHTTCE---EEEECSSSS-SSCSSCC-------H----HH----------------------------------------
T ss_pred HHcCCE---EEEEeccCc-cCCcccC-------H----HH----------------------------------------
Confidence 988765 999999875 333 221 0 00
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c-EEE-------cCCceeeeccEEEE
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G-IVV-------DGQTTPLKTDLVIL 370 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~-v~~-------~~g~~~~~~D~Vi~ 370 (418)
.+.+.+.+++.+|+++.+. +..+..+ + +.+ .++++ +++|.||+
T Consensus 223 -------------------------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~-i~~D~vv~ 276 (474)
T 1zmd_A 223 -------------------------SKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEV-ITCDVLLV 276 (474)
T ss_dssp -------------------------HHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEE-EEESEEEE
T ss_pred -------------------------HHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceE-EEcCEEEE
Confidence 0112234455678888775 6676543 2 433 34566 99999999
Q ss_pred ccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 371 ATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 371 atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+|++|+..++. ++...+. +.++.+.++..+.++.|+||.
T Consensus 277 a~G~~p~~~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 317 (474)
T 1zmd_A 277 CIGRRPFTKNLG------LEELGIELDPRGRIPVNTRFQTKIPNIYA 317 (474)
T ss_dssp CSCEEECCTTSS------HHHHTCCCCTTSCCCCCTTCBCSSTTEEE
T ss_pred CcCCCcCCCcCC------chhcCCccCCCCCEEECcCCccCCCCEEE
Confidence 999999954310 2222232 335678888777888999985
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=222.79 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=168.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-----cCCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-----FSDYPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~ 73 (418)
|.++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.. +.|...+..+...+. +..+.+... ...
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~--~~~ 100 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVA--NPK 100 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECC--CCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccC--CCc
Confidence 55689999999999999999999999999999998999999876 344433322222111 111111110 011
Q ss_pred CChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+...+..+ +....++.++ .+.. ..+..++ .+.+.|...+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~------------------------~~~~~v~~~~-- 151 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKI--DGFQ-GTGKVLG------------------------QGKVSVTNEK-- 151 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEE-SEEEECS------------------------SSEEEEECTT--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEec------------------------CCEEEEEeCC--
Confidence 111222222 2223334454 3333 2222221 1234454322
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCC-CCceEEecc-CCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEA-FHGKVIHSM-DYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
+...++.||+||+|||+. | +.++ |.+. +.+..++++ .... ....+++|+|||+|.+|+|+|.
T Consensus 152 -g~~~~~~~d~lViATGs~---p--~~ip---g~~~~~~~~~~~~~~~~~~-------~~~~~~~vvViGgG~~g~E~A~ 215 (491)
T 3urh_A 152 -GEEQVLEAKNVVIATGSD---V--AGIP---GVEVAFDEKTIVSSTGALA-------LEKVPASMIVVGGGVIGLELGS 215 (491)
T ss_dssp -SCEEEEECSEEEECCCEE---C--CCBT---TBCCCCCSSSEECHHHHTS-------CSSCCSEEEEECCSHHHHHHHH
T ss_pred -CceEEEEeCEEEEccCCC---C--CCCC---CcccccCCeeEEehhHhhh-------hhhcCCeEEEECCCHHHHHHHH
Confidence 344689999999999965 3 2333 4432 222223322 2222 2245789999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (418)
.|...+.. |+++.+.+.. ++... . .
T Consensus 216 ~l~~~g~~---Vtlv~~~~~~-l~~~d-------~----~---------------------------------------- 240 (491)
T 3urh_A 216 VWARLGAK---VTVVEFLDTI-LGGMD-------G----E---------------------------------------- 240 (491)
T ss_dssp HHHHHTCE---EEEECSSSSS-SSSSC-------H----H----------------------------------------
T ss_pred HHHHcCCE---EEEEeccccc-cccCC-------H----H----------------------------------------
Confidence 99998865 9999988753 33221 0 0
Q ss_pred hhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcC---C--ceeeeccEEEE
Q 014821 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDG---Q--TTPLKTDLVIL 370 (418)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~---g--~~~~~~D~Vi~ 370 (418)
+.+.+.+.+++.+|+++.+. +..+..+ + +.+++ | ++ +++|.||+
T Consensus 241 -------------------------~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~Vi~ 294 (491)
T 3urh_A 241 -------------------------VAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT-LDAEVVLI 294 (491)
T ss_dssp -------------------------HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEE-EEESEEEE
T ss_pred -------------------------HHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEE-EEcCEEEE
Confidence 01112234566678888775 6666532 2 55552 5 45 99999999
Q ss_pred ccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 371 ATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 371 atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|||++|+..++. +....+. +.++.+.++..+.++.||||.
T Consensus 295 a~G~~p~~~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 335 (491)
T 3urh_A 295 ATGRKPSTDGLG------LAKAGVVLDSRGRVEIDRHFQTSIAGVYA 335 (491)
T ss_dssp CCCCEECCTTSC------HHHHTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred eeCCccCCCccC------chhcCceECCCCCEeECCCCCCCCCCEEE
Confidence 999999954311 2222222 346778888878889999996
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-26 Score=220.05 Aligned_cols=253 Identities=13% Similarity=0.108 Sum_probs=167.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
+.+|+|||||+||+++|..|...+.+++|||+.+..+. ++... +. .+.. ..+..++..+
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y-~~~~l-------~~---~l~g----------~~~~~~l~~~ 67 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY-YRPRL-------NE---IIAK----------NKSIDDILIK 67 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB-CGGGH-------HH---HHHS----------CCCGGGTBSS
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc-ccChh-------hH---HHcC----------CCCHHHccCC
Confidence 57999999999999999999777899999999875431 00000 00 0000 0111222223
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+..+++++ .++++++|++++... .+|++.++ .++.||+||+|||+
T Consensus 68 ~~~~~~~~~i--~~~~~~~V~~id~~~------------------------~~v~~~~g-----~~~~yd~lvlAtG~-- 114 (385)
T 3klj_A 68 KNDWYEKNNI--KVITSEFATSIDPNN------------------------KLVTLKSG-----EKIKYEKLIIASGS-- 114 (385)
T ss_dssp CHHHHHHTTC--EEECSCCEEEEETTT------------------------TEEEETTS-----CEEECSEEEECCCE--
T ss_pred CHHHHHHCCC--EEEeCCEEEEEECCC------------------------CEEEECCC-----CEEECCEEEEecCC--
Confidence 3444556788 789999999998765 46777766 58999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
.|..|+++ |.+ .+++...+.+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+.+.++
T Consensus 115 -~p~~p~i~---G~~----~v~~~~~~~d~~-~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~---Vtvv~~~~~~l 182 (385)
T 3klj_A 115 -IANKIKVP---HAD----EIFSLYSYDDAL-KIKDECKNKGKAFIIGGGILGIELAQAIIDSGTP---ASIGIILEYPL 182 (385)
T ss_dssp -EECCCCCT---TCS----CEECCSSHHHHH-HHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSSC
T ss_pred -CcCCCCCC---CCC----CeEEeCCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCe---EEEEEcCCccc
Confidence 57788777 665 244422222111 0111223378999999999999999999998865 99999988533
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
..... ..
T Consensus 183 ~~~~~-----------~~-------------------------------------------------------------- 189 (385)
T 3klj_A 183 ERQLD-----------RD-------------------------------------------------------------- 189 (385)
T ss_dssp TTTSC-----------HH--------------------------------------------------------------
T ss_pred hhhcC-----------HH--------------------------------------------------------------
Confidence 22121 00
Q ss_pred ccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCc
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKL 401 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 401 (418)
+.+.+.+.+++.+|+++.+. +..+ |++ +++|.||+|||++|+..+++. ..+... +++
T Consensus 190 ---~~~~~~~~l~~~gV~~~~~~~v~~i---------g~~-~~~D~vv~a~G~~p~~~~~~~--------~gl~~~-~gi 247 (385)
T 3klj_A 190 ---GGLFLKDKLDRLGIKIYTNSNFEEM---------GDL-IRSSCVITAVGVKPNLDFIKD--------TEIASK-RGI 247 (385)
T ss_dssp ---HHHHHHHHHHTTTCEEECSCCGGGC---------HHH-HHHSEEEECCCEEECCGGGTT--------SCCCBS-SSE
T ss_pred ---HHHHHHHHHHhCCCEEEeCCEEEEc---------CeE-EecCeEEECcCcccChhhhhh--------cCCCcC-CCE
Confidence 01112234556678888775 5444 667 999999999999999654433 333233 347
Q ss_pred cceeeeeeccCcccc
Q 014821 402 PLYRSAHIYIDTLTY 416 (418)
Q Consensus 402 ~~~~~~~~~~~~~~~ 416 (418)
.++..+.++.|+||.
T Consensus 248 ~vd~~~~t~~~~IyA 262 (385)
T 3klj_A 248 LVNDHMETSIKDIYA 262 (385)
T ss_dssp EECTTCBCSSTTEEE
T ss_pred EECCCcccCCCCEEE
Confidence 788777778999985
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-25 Score=222.28 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=176.3
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHh-CCCceEEEe--------eCCCCCccccc--cCCcceecCCcccc----ccCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFE--------ARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYP 64 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie--------~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~ 64 (418)
|. ++||+|||||++|+++|..|++ .|.+|+||| +...+||.|.. +.|...+......+ .+..+.
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g 83 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFG 83 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcC
Confidence 54 5899999999999999999999 999999999 34678998876 33432222111110 111122
Q ss_pred CCCCCCCC--CCChhHHHHHHHHH-----------HHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 65 WPDSVTTD--FPDHNQVLDYIQSY-----------ASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 65 ~~~~~~~~--~~~~~~~~~~l~~~-----------~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
+... .. ..+...+..+.+.+ .++. ++ .++.+ .+..++ .
T Consensus 84 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g-~~~~i~--~--------------------- 135 (495)
T 2wpf_A 84 WEFD--GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL--DFFLG-WGSLES--K--------------------- 135 (495)
T ss_dssp EECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE--EEEES-EEEEEE--T---------------------
T ss_pred cccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEe-EEEEee--C---------------------
Confidence 2110 00 12233444443333 2344 55 44443 455543 2
Q ss_pred CCceEEEEecCCC---CceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEE
Q 014821 131 RGKWTVAVEDAKN---HSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVT 207 (418)
Q Consensus 131 ~~~~~v~~~~~~~---~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (418)
++|.+.+..+ +...++.||+||+|||+ .|..|+++ |.+ .++++.++.... ..+++++
T Consensus 136 ---~~v~v~~~~~~~~~~~~~~~~d~lViATGs---~p~~p~i~---G~~----~~~~~~~~~~~~-------~~~~~vv 195 (495)
T 2wpf_A 136 ---NVVVVRETADPKSAVKERLQADHILLATGS---WPQMPAIP---GIE----HCISSNEAFYLP-------EPPRRVL 195 (495)
T ss_dssp ---TEEEEESSSSTTSCEEEEEEEEEEEECCCE---EECCCCCT---TGG----GCEEHHHHTTCS-------SCCSEEE
T ss_pred ---CEEEEeecCCccCCCCeEEEcCEEEEeCCC---CcCCCCCC---Ccc----ccccHHHHHhhh-------hcCCeEE
Confidence 3466652111 00357999999999995 47777777 653 244444433321 3478999
Q ss_pred EEcCCCCHHHHHHHHhhh---cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhH
Q 014821 208 VVGLQKSALDIAMECTTA---NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSP 284 (418)
Q Consensus 208 VvG~G~sa~e~a~~l~~~---~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (418)
|||+|.+|+|+|..|... +.. |+++.|.+. +++... . .
T Consensus 196 ViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~-~l~~~d-------~----~------------------------ 236 (495)
T 2wpf_A 196 TVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNL-ILRGFD-------E----T------------------------ 236 (495)
T ss_dssp EECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSS-SCTTSC-------H----H------------------------
T ss_pred EECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCc-cccccC-------H----H------------------------
Confidence 999999999999999988 654 999999875 333322 0 0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcC
Q 014821 285 LRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDG 358 (418)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~ 358 (418)
+.+.+.+.+++.+|+++.+. +..+..+ .|.+++
T Consensus 237 -----------------------------------------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~ 275 (495)
T 2wpf_A 237 -----------------------------------------IREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFES 275 (495)
T ss_dssp -----------------------------------------HHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETT
T ss_pred -----------------------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECC
Confidence 00112234556678888885 7777542 367788
Q ss_pred CceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 359 QTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 359 g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|++ +++|.||+|+|++|+...+ .+....+. +.++.+.++..+.++.||||.
T Consensus 276 G~~-i~~D~vv~a~G~~p~~~~L------~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 327 (495)
T 2wpf_A 276 GKT-LDVDVVMMAIGRIPRTNDL------QLGNVGVKLTPKGGVQVDEFSRTNVPNIYA 327 (495)
T ss_dssp SCE-EEESEEEECSCEEECCGGG------TGGGTTCCBCTTSSBCCCTTCBCSSTTEEE
T ss_pred CcE-EEcCEEEECCCCccccccc------chhhcCccCCCCCCEEECCCCccCCCCEEE
Confidence 987 9999999999999995411 02222222 335678888777778999996
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=218.41 Aligned_cols=281 Identities=10% Similarity=0.102 Sum_probs=173.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.. +.|...+......+ .+..+.++.. ......
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~--~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYP--EPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCC--CCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccC--CCccCH
Confidence 589999999999999999999999999999998889988765 22221111000000 0111111100 111122
Q ss_pred hHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC----
Q 014821 77 NQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA---- 141 (418)
Q Consensus 77 ~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 141 (418)
..+.. .+...+++.++ .+..++.+. ++ . +.+.|...++
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~--~----------------------~~v~v~~~~g~~~~ 136 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKV--DVIQGDGQF-LD--P----------------------HHLEVSLTAGDAYE 136 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEEEE-EE--T----------------------TEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEeeEEEE-cc--C----------------------CEEEEEecCCcccc
Confidence 22222 23344555676 666655433 22 2 3355544332
Q ss_pred ---CCCceeEEEeCEEEEeeccCCCCCCCCC-CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 142 ---KNHSTEVHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 142 ---~~~~~~~i~~d~vIlAtG~~~~~p~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
.++...++.||+||+|||+. |..|+ ++ . + ..++++.+..... ..+++++|||+|.+|+|
T Consensus 137 ~~~~~g~~~~i~ad~lViAtGs~---p~~~~~i~---~-~---~~v~~~~~~~~~~-------~~~~~vvViGgG~ig~E 199 (482)
T 1ojt_A 137 QAAPTGEKKIVAFKNCIIAAGSR---VTKLPFIP---E-D---PRIIDSSGALALK-------EVPGKLLIIGGGIIGLE 199 (482)
T ss_dssp EEEEEEEEEEEEEEEEEECCCEE---ECCCSSCC---C-C---TTEECHHHHTTCC-------CCCSEEEEESCSHHHHH
T ss_pred cccccCcceEEEcCEEEECCCCC---CCCCCCCC---c-c---CcEEcHHHHhccc-------ccCCeEEEECCCHHHHH
Confidence 11233579999999999965 55554 32 1 1 1245444433321 34789999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..|...+.. |+++.+.+. ++|... . .
T Consensus 200 ~A~~l~~~G~~---Vtlv~~~~~-~l~~~~-------~----~------------------------------------- 227 (482)
T 1ojt_A 200 MGTVYSTLGSR---LDVVEMMDG-LMQGAD-------R----D------------------------------------- 227 (482)
T ss_dssp HHHHHHHHTCE---EEEECSSSS-SSTTSC-------H----H-------------------------------------
T ss_pred HHHHHHHcCCe---EEEEEECCc-cccccC-------H----H-------------------------------------
Confidence 99999998865 999999875 333222 0 0
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcC----CceeeeccEE
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDG----QTTPLKTDLV 368 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~----g~~~~~~D~V 368 (418)
+.+.+.+.+++.+|+++.+. +.+++.+ .+++++ |++ +++|.|
T Consensus 228 ----------------------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~-~~~D~v 278 (482)
T 1ojt_A 228 ----------------------------LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEP-QRYDAV 278 (482)
T ss_dssp ----------------------------HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSC-EEESCE
T ss_pred ----------------------------HHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceE-EEcCEE
Confidence 01112335566678888886 7777543 266776 777 899999
Q ss_pred EEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 369 ILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 369 i~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+|+|++|+..+.. +....+. +.++.+.++..+.++.|+||.
T Consensus 279 v~a~G~~p~~~~l~------~~~~gl~~~~~G~i~vd~~~~t~~~~IyA 321 (482)
T 1ojt_A 279 LVAAGRAPNGKLIS------AEKAGVAVTDRGFIEVDKQMRTNVPHIYA 321 (482)
T ss_dssp EECCCEEECGGGTT------GGGTTCCCCTTSCCCCCTTSBCSSTTEEE
T ss_pred EECcCCCcCCCCCC------hhhcCceeCCCCCEeeCCCcccCCCCEEE
Confidence 99999999954310 2222222 234678888877889999995
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-25 Score=221.65 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=171.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc-----ccCCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY-----QFSDYPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~ 73 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+. .+||.|.. +.|...+......+ .+..+.++ . .. .
T Consensus 1 M~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~-~~-~ 76 (464)
T 2a8x_A 1 MTHYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-G-EV-T 76 (464)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-E-CC-E
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-C-CC-c
Confidence 77799999999999999999999999999999997 78887754 22222111100000 01111111 0 00 0
Q ss_pred CChhH-----------HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQ-----------VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+... +...+...+++.++ .++.++.+. + +. +.+.|...++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~~~~g~~~~-i--d~----------------------~~v~V~~~~G- 128 (464)
T 2a8x_A 77 FDYGIAYDRSRKVAEGRVAGVHFLMKKNKI--TEIHGYGTF-A--DA----------------------NTLLVDLNDG- 128 (464)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECEEEEE-S--SS----------------------SEEEEEETTS-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-e--cC----------------------CeEEEEeCCC-
Confidence 11111 22334555666677 666655432 2 22 3455654332
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
...++.||+||+|||+. |..|+++ +.+. .++++.+.... ...+++|+|||+|.+|+|+|..|
T Consensus 129 --~~~~~~~d~lViAtG~~---~~~~~~~---g~~~---~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l 190 (464)
T 2a8x_A 129 --GTESVTFDNAIIATGSS---TRLVPGT---SLSA---NVVTYEEQILS-------RELPKSIIIAGAGAIGMEFGYVL 190 (464)
T ss_dssp --CCEEEEEEEEEECCCEE---ECCCTTC---CCBT---TEECHHHHHTC-------SSCCSEEEEECCSHHHHHHHHHH
T ss_pred --ceEEEEcCEEEECCCCC---CCCCCCC---CCCc---eEEecHHHhhc-------cccCCeEEEECCcHHHHHHHHHH
Confidence 22579999999999965 5666666 5432 24443332221 13478999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...+.. |+++.|.+. ++|... ..+
T Consensus 191 ~~~g~~---Vtlv~~~~~-~l~~~~-----------~~~----------------------------------------- 214 (464)
T 2a8x_A 191 KNYGVD---VTIVEFLPR-ALPNED-----------ADV----------------------------------------- 214 (464)
T ss_dssp HHTTCE---EEEECSSSS-SSTTSC-----------HHH-----------------------------------------
T ss_pred HHcCCe---EEEEEcCCc-cccccC-----------HHH-----------------------------------------
Confidence 988765 999999875 333322 000
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEc-CC--ceeeeccEEEEccCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVD-GQ--TTPLKTDLVILATGF 374 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~-~g--~~~~~~D~Vi~atG~ 374 (418)
.+.+.+.+++.+|+++.+. +..++.+ + +.++ +| ++ +++|.||+|+|+
T Consensus 215 ------------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~-~~~D~vv~a~G~ 269 (464)
T 2a8x_A 215 ------------------------SKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQE-LKAEKVLQAIGF 269 (464)
T ss_dssp ------------------------HHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEE-EEESEEEECSCE
T ss_pred ------------------------HHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEE-EEcCEEEECCCC
Confidence 0111233445567788775 6677643 2 3444 66 45 999999999999
Q ss_pred CCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+..++. ++...+. +.++.+.++..+.++.||||.
T Consensus 270 ~p~~~~l~------~~~~gl~~~~~G~i~vd~~~~t~~~~IyA 306 (464)
T 2a8x_A 270 APNVEGYG------LDKAGVALTDRKAIGVDDYMRTNVGHIYA 306 (464)
T ss_dssp EECCSSSC------HHHHTCCBCTTSSBCCCTTSBCSSTTEEE
T ss_pred CccCCCCC------chhcCCccCCCCCEeECcCCccCCCCEEE
Confidence 99954311 2222232 335778888878889999985
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-25 Score=215.16 Aligned_cols=256 Identities=15% Similarity=0.168 Sum_probs=168.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.||+|||||++|+++|..|++.| +|+|||+.+..+ |.. +. + +. .+... ....++..+.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~--~~--l--~~---~~~g~----------~~~~~~~~~~ 66 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSK--PM--L--SH---YIAGF----------IPRNRLFPYS 66 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCS--TT--H--HH---HHTTS----------SCGGGGCSSC
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--ccc--ch--h--HH---HHhCC----------CCHHHhccCC
Confidence 58999999999999999999999 999999976432 100 00 0 00 00000 0111121122
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..+++++ +++.+++|..++... +.|. .++ .++.||+||+|||+
T Consensus 67 ~~~~~~~~v--~~~~g~~v~~id~~~------------------------~~V~-~~g-----~~~~~d~lViATGs--- 111 (367)
T 1xhc_A 67 LDWYRKRGI--EIRLAEEAKLIDRGR------------------------KVVI-TEK-----GEVPYDTLVLATGA--- 111 (367)
T ss_dssp HHHHHHHTE--EEECSCCEEEEETTT------------------------TEEE-ESS-----CEEECSEEEECCCE---
T ss_pred HHHHHhCCc--EEEECCEEEEEECCC------------------------CEEE-ECC-----cEEECCEEEECCCC---
Confidence 334456687 788888899988655 5666 444 47999999999995
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.|..|+++ |.+ .+++...+.+.. .......++++++|||+|.+|+|+|..|...+.. |+++.|.+. ++
T Consensus 112 ~p~~p~i~---G~~----~v~~~~~~~~~~-~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~-~l 179 (367)
T 1xhc_A 112 RAREPQIK---GKE----YLLTLRTIFDAD-RIKESIENSGEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAM-FL 179 (367)
T ss_dssp EECCCCSB---TGG----GEECCCSHHHHH-HHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSC-CT
T ss_pred CCCCCCCC---CcC----CEEEEcCHHHHH-HHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCCe-ec
Confidence 57777777 622 344432222111 0001112458999999999999999999998765 999998875 33
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
+ .. ..+
T Consensus 180 ~-~~-----------~~~-------------------------------------------------------------- 185 (367)
T 1xhc_A 180 G-LD-----------EEL-------------------------------------------------------------- 185 (367)
T ss_dssp T-CC-----------HHH--------------------------------------------------------------
T ss_pred c-CC-----------HHH--------------------------------------------------------------
Confidence 3 21 000
Q ss_pred cccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCcc
Q 014821 324 ITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLP 402 (418)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 402 (418)
.+.+.+.+++.+|+++.+. +..++.+++.+++|+ +++|.||+|+|++|+..++ +...+... +.+.
T Consensus 186 ---~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~--i~~D~vi~a~G~~p~~~ll--------~~~gl~~~-~gi~ 251 (367)
T 1xhc_A 186 ---SNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGF--IEGKVKICAIGIVPNVDLA--------RRSGIHTG-RGIL 251 (367)
T ss_dssp ---HHHHHHHHHHTTEEEECSCCEEEECSSEEEETTEE--EECSCEEEECCEEECCHHH--------HHTTCCBS-SSEE
T ss_pred ---HHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCCE--EEcCEEEECcCCCcCHHHH--------HhCCCCCC-CCEE
Confidence 0112235566689999886 888887789998885 9999999999999995433 33333232 3477
Q ss_pred ceeeeeeccCcccc
Q 014821 403 LYRSAHIYIDTLTY 416 (418)
Q Consensus 403 ~~~~~~~~~~~~~~ 416 (418)
++..+.++.||||.
T Consensus 252 Vd~~~~t~~~~IyA 265 (367)
T 1xhc_A 252 IDDNFRTSAKDVYA 265 (367)
T ss_dssp CCTTSBCSSTTEEE
T ss_pred ECCCcccCCCCEEE
Confidence 77766778899985
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=219.09 Aligned_cols=275 Identities=14% Similarity=0.185 Sum_probs=170.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~ 75 (418)
.++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+......+ .+..+.++.. ....+
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC--EGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC--CCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC--CCccC
Confidence 3589999999999999999999999999999975 79998866 33332222111111 1112222211 12233
Q ss_pred hhHHHHHHHHH-----------HHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVLDYIQSY-----------ASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~~~l~~~-----------~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+..+.+.+ .++.++ .+.. ..+..++. ..+.|.. ++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~~~~------------------------~~~~v~~-~g--- 144 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHI--EIIR-GHAAFTSD------------------------PKPTIEV-SG--- 144 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEE-SCEEECSC------------------------SSCEEEE-TT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEeeC------------------------CeEEEEE-CC---
Confidence 34444443333 233344 3333 23332221 2255653 33
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCC---CCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIP---EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
.++.||+||+|||+ .|..| +++ |.+ ..+++..+... ...+++|+|||+|.+|+|+|..
T Consensus 145 --~~~~~d~lviAtG~---~p~~p~~~~i~---G~~----~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~ 205 (478)
T 3dk9_A 145 --KKYTAPHILIATGG---MPSTPHESQIP---GAS----LGITSDGFFQL-------EELPGRSVIVGAGYIAVEMAGI 205 (478)
T ss_dssp --EEEECSCEEECCCE---EECCCCTTTST---TGG----GSBCHHHHTTC-------CSCCSEEEEECCSHHHHHHHHH
T ss_pred --EEEEeeEEEEccCC---CCCCCCcCCCC---CCc----eeEchHHhhch-------hhcCccEEEECCCHHHHHHHHH
Confidence 47999999999995 46777 677 654 12333333221 2347899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
|...+.. |+++.|.+..+ +... ..
T Consensus 206 l~~~g~~---Vtlv~~~~~~l-~~~d-----------~~----------------------------------------- 229 (478)
T 3dk9_A 206 LSALGSK---TSLMIRHDKVL-RSFD-----------SM----------------------------------------- 229 (478)
T ss_dssp HHHTTCE---EEEECSSSSSC-TTSC-----------HH-----------------------------------------
T ss_pred HHHcCCe---EEEEEeCCccc-cccC-----------HH-----------------------------------------
Confidence 9998765 99999987633 3322 00
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc----EEEcC---C----ceeeeccE
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG----IVVDG---Q----TTPLKTDL 367 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~----v~~~~---g----~~~~~~D~ 367 (418)
+.+.+.+.+++.+|+++.+. +..++. ++ +.+++ | ++ +++|.
T Consensus 230 ------------------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~-~~~D~ 284 (478)
T 3dk9_A 230 ------------------------ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI-PDVDC 284 (478)
T ss_dssp ------------------------HHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEE-EEESE
T ss_pred ------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceE-EEcCE
Confidence 01112234556678888875 666653 23 45554 2 45 89999
Q ss_pred EEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 368 VILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 368 Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
||+|+|++|+...+. +....+. +.++.+.++..+.++.||||.
T Consensus 285 vi~a~G~~p~~~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 328 (478)
T 3dk9_A 285 LLWAIGRVPNTKDLS------LNKLGIQTDDKGHIIVDEFQNTNVKGIYA 328 (478)
T ss_dssp EEECSCEEESCTTSC------GGGGTCCBCTTCCBCCCTTCBCSSTTEEE
T ss_pred EEEeeccccCCCCCC------chhcCCeeCCCCCEeeCCCcccCCCCEEE
Confidence 999999999854110 2222222 346778888877889999996
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=218.30 Aligned_cols=274 Identities=15% Similarity=0.184 Sum_probs=169.9
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccc----cccCCCCCCCCCCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQL----YQFSDYPWPDSVTTDF 73 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~ 73 (418)
|. ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+...... .....+.+... ...
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~--~~~ 77 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS--GGT 77 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC-----
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC--CCC
Confidence 54 689999999999999999999999999999997 78998875 2232211111000 01111111110 111
Q ss_pred CChhHHHHHHH-----------HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQVLDYIQ-----------SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+...+..+.+ ...++.++ .+..+ ++..++ . +.|.+ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~--~------------------------~~v~~-~g- 126 (463)
T 2r9z_A 78 LDWPRLVAGRDRYIGAINSFWDGYVERLGI--TRVDG-HARFVD--A------------------------HTIEV-EG- 126 (463)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEE--T------------------------TEEEE-TT-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEe-EEEEcc--C------------------------CEEEE-CC-
Confidence 22233333322 22344455 44443 444443 2 34555 33
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
.++.||+||+|||+ .|..|+++ |.+. ++++..+.. ....+++|+|||+|.+|+|+|..|
T Consensus 127 ----~~~~~d~lviAtGs---~p~~p~i~---G~~~----~~~~~~~~~-------~~~~~~~vvVvGgG~~g~e~A~~l 185 (463)
T 2r9z_A 127 ----QRLSADHIVIATGG---RPIVPRLP---GAEL----GITSDGFFA-------LQQQPKRVAIIGAGYIGIELAGLL 185 (463)
T ss_dssp ----EEEEEEEEEECCCE---EECCCSCT---TGGG----SBCHHHHHH-------CSSCCSEEEEECCSHHHHHHHHHH
T ss_pred ----EEEEcCEEEECCCC---CCCCCCCC---Cccc----eecHHHHhh-------hhccCCEEEEECCCHHHHHHHHHH
Confidence 57999999999995 47777777 6531 223222211 123478999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...+.. |+++.+++.. ++... . .+
T Consensus 186 ~~~G~~---Vtlv~~~~~~-l~~~~-------~----~~----------------------------------------- 209 (463)
T 2r9z_A 186 RSFGSE---VTVVALEDRL-LFQFD-------P----LL----------------------------------------- 209 (463)
T ss_dssp HHTTCE---EEEECSSSSS-STTSC-------H----HH-----------------------------------------
T ss_pred HhcCCE---EEEEEcCCcc-ccccC-------H----HH-----------------------------------------
Confidence 988765 9999998753 23221 0 00
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCc-eeeeccEEEEccCCCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQT-TPLKTDLVILATGFKG 376 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~-~~~~~D~Vi~atG~~~ 376 (418)
.+.+.+.+++.+|+++.+. +..++.+ .|.+++|+ + +++|.||+|||++|
T Consensus 210 ------------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~-i~~D~vv~a~G~~p 264 (463)
T 2r9z_A 210 ------------------------SATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRL-EGFDSVIWAVGRAP 264 (463)
T ss_dssp ------------------------HHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEE-EEESEEEECSCEEE
T ss_pred ------------------------HHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEE-EEcCEEEECCCCCc
Confidence 0111234556678888886 7777542 47778898 7 99999999999999
Q ss_pred CcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 377 DVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.+.+ .+....+. +.++.+.++..+.++.||||.
T Consensus 265 ~~~~l------~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya 299 (463)
T 2r9z_A 265 NTRDL------GLEAAGIEVQSNGMVPTDAYQNTNVPGVYA 299 (463)
T ss_dssp SCTTS------CHHHHTCCCCTTSCCCCCTTSBCSSTTEEE
T ss_pred CCCCC------CchhcCCccCCCCCEeECCCCccCCCCEEE
Confidence 85311 02222232 336778888777888999986
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=218.92 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=175.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDF 73 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~ 73 (418)
++||+|||||++|+++|..|++. |.+|+|||+.. +||.|.. +.|...+......+ .+..+.++.......
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 48999999999999999999998 99999999987 9998765 22222111111100 111111110000111
Q ss_pred CChhHHH-----------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+...+. .++....+++++ .++.++ +..++... +. ..+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~~~~--~~----------------~~~~~~V~~~~g- 138 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGV--QVIAGR-GELIDSTP--GL----------------ARHRIKATAADG- 138 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEECCSSS--CC----------------SSEEEEEECTTS-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEecCcc--cC----------------CCCEEEEEeCCC-
Confidence 1222322 234555666777 666653 55554410 00 002244443332
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
....+.||+||+|||+ .|..|+++ |.+.. .++++.+.... ...+++++|||+|.+|+|+|..|
T Consensus 139 --~~~~~~~d~lviATGs---~p~~p~i~---g~~~~--~v~~~~~~~~~-------~~~~~~vvViGgG~ig~E~A~~l 201 (499)
T 1xdi_A 139 --STSEHEADVVLVATGA---SPRILPSA---QPDGE--RILTWRQLYDL-------DALPDHLIVVGSGVTGAEFVDAY 201 (499)
T ss_dssp --CEEEEEESEEEECCCE---EECCCGGG---CCCSS--SEEEGGGGGGC-------SSCCSSEEEESCSHHHHHHHHHH
T ss_pred --cEEEEEeCEEEEcCCC---CCCCCCCC---CCCcC--cEEehhHhhhh-------hccCCeEEEECCCHHHHHHHHHH
Confidence 2247999999999995 47777776 65432 24554443321 23468999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...+.. |+++.+.+. ++|... . .
T Consensus 202 ~~~g~~---Vtlv~~~~~-~l~~~d-------~----~------------------------------------------ 224 (499)
T 1xdi_A 202 TELGVP---VTVVASQDH-VLPYED-------A----D------------------------------------------ 224 (499)
T ss_dssp HHTTCC---EEEECSSSS-SSCCSS-------H----H------------------------------------------
T ss_pred HHcCCe---EEEEEcCCc-cccccC-------H----H------------------------------------------
Confidence 988765 999999875 333322 0 0
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc----EEEcCCceeeeccEEEEccCCCCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~----v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+...+.+.+++.+|+++.+. +..++.++ +.+.+|++ +++|.||+|+|++|+
T Consensus 225 -----------------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~aD~Vv~a~G~~p~ 280 (499)
T 1xdi_A 225 -----------------------AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRT-VEGSHALMTIGSVPN 280 (499)
T ss_dssp -----------------------HHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCE-EEESEEEECCCEEEC
T ss_pred -----------------------HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcE-EEcCEEEECCCCCcC
Confidence 01112234556678888875 77776432 45567888 999999999999999
Q ss_pred cchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..++. ++...+. +..+.+.++..+.++.|+||.
T Consensus 281 ~~~l~------l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 314 (499)
T 1xdi_A 281 TSGLG------LERVGIQLGRGNYLTVDRVSRTLATGIYA 314 (499)
T ss_dssp CSSSC------TTTTTCCCBTTTBCCCCSSSBCSSTTEEE
T ss_pred CCcCC------chhcCceECCCCCEEECCCcccCCCCEEE
Confidence 64411 1222222 234668888777778999985
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=215.49 Aligned_cols=265 Identities=14% Similarity=0.141 Sum_probs=167.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
..+||+|||||++|+++|..|++.|. +|+|||+.+.+.. .. + ..+.. +.. ... ....+
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~--~~--~----~l~~~---~~~--------~~~-~~~~~ 62 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH--HL--P----PLSKA---YLA--------GKA-TAESL 62 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB--CS--G----GGGTT---TTT--------TCS-CSGGG
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCC--cC--C----CCcHH---HhC--------CCC-ChHHh
Confidence 35899999999999999999999998 7999999754321 00 0 00000 000 000 00111
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.....+..+++++ .++++++|..++... ..|.+.++ .++.||+||+|||
T Consensus 63 ~~~~~~~~~~~gv--~~~~~~~v~~i~~~~------------------------~~v~~~~g-----~~~~~d~lviAtG 111 (431)
T 1q1r_A 63 YLRTPDAYAAQNI--QLLGGTQVTAINRDR------------------------QQVILSDG-----RALDYDRLVLATG 111 (431)
T ss_dssp BSSCHHHHHHTTE--EEECSCCEEEEETTT------------------------TEEEETTS-----CEEECSEEEECCC
T ss_pred cccCHHHHHhCCC--EEEeCCEEEEEECCC------------------------CEEEECCC-----CEEECCEEEEcCC
Confidence 1111233456687 788888999998655 45776655 4799999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCc--eEEeccCCCCchhh--hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHG--KVIHSMDYSDMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
+ .|..|+++ |.+. .+ .+.+ +....+. .......+++|+|||+|.+|+|+|..|...+.. |+++
T Consensus 112 ~---~p~~~~i~---G~~~-~~~~~v~~---~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv 178 (431)
T 1q1r_A 112 G---RPRPLPVA---SGAV-GKANNFRY---LRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMH---VTLL 178 (431)
T ss_dssp E---EECCCGGG---TTHH-HHSTTEEE---SSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEE
T ss_pred C---CccCCCCC---Cccc-CCCceEEE---ECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCE---EEEE
Confidence 6 47777777 6541 11 0332 1111111 112234589999999999999999999988765 9999
Q ss_pred EecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccc
Q 014821 236 YRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFL 315 (418)
Q Consensus 236 ~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (418)
.+.+.. ++... +. .+
T Consensus 179 ~~~~~~-l~~~~------~~----~~------------------------------------------------------ 193 (431)
T 1q1r_A 179 DTAARV-LERVT------AP----PV------------------------------------------------------ 193 (431)
T ss_dssp CSSSST-TTTTS------CH----HH------------------------------------------------------
T ss_pred EeCCcc-ccchh------hH----HH------------------------------------------------------
Confidence 988752 22211 00 00
Q ss_pred cccccccccccCcchhhhhccCcEEEeccC-ceeEec----C---cEEEcCCceeeeccEEEEccCCCCCcchhccccch
Q 014821 316 QELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE----D---GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQ 387 (418)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~----~---~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~ 387 (418)
.+.+.+.+++.+|+++.+. +..+.. + .|.+++|++ +++|.||+|+|++++..+++.
T Consensus 194 -----------~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~-i~~D~Vv~a~G~~p~~~l~~~---- 257 (431)
T 1q1r_A 194 -----------SAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTR-LPADLVIAGIGLIPNCELASA---- 257 (431)
T ss_dssp -----------HHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCE-EECSEEEECCCEEECCHHHHH----
T ss_pred -----------HHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCE-EEcCEEEECCCCCcCcchhhc----
Confidence 0111223444567777775 666654 2 367889988 999999999999998554333
Q ss_pred hhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 388 TFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..+... +++.++..+.++.|+||.
T Consensus 258 ----~gl~~~-~gi~Vd~~~~ts~~~IyA 281 (431)
T 1q1r_A 258 ----AGLQVD-NGIVINEHMQTSDPLIMA 281 (431)
T ss_dssp ----TTCCBS-SSEECCTTSBCSSTTEEE
T ss_pred ----cCCCCC-CCEEECCCcccCCCCEEE
Confidence 333232 347777777778899985
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-24 Score=212.72 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=172.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+||+|||||++|+++|..|++. |.+|+|||+++.++..... + + .+...... ......+..
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~------~--~----~~~~g~~~------~~~~~~~~~ 62 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCG------I--A----LYLGKEIK------NNDPRGLFY 62 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGG------H--H----HHHTTCBG------GGCGGGGBS
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccccc------c--h----hhhcCCcc------cCCHHHhhh
Confidence 5899999999999999999998 8999999998755321110 0 0 00000000 000011111
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++....+++++ .++++++|..++... + .|.+.+..++...++.||+||+|||+
T Consensus 63 ~~~~~~~~~gv--~~~~~~~v~~i~~~~----------------------~--~v~v~~~~~g~~~~~~~d~lviAtGs- 115 (452)
T 2cdu_A 63 SSPEELSNLGA--NVQMRHQVTNVDPET----------------------K--TIKVKDLITNEEKTEAYDKLIMTTGS- 115 (452)
T ss_dssp CCHHHHHHTTC--EEEESEEEEEEEGGG----------------------T--EEEEEETTTCCEEEEECSEEEECCCE-
T ss_pred cCHHHHHHcCC--EEEeCCEEEEEEcCC----------------------C--EEEEEecCCCceEEEECCEEEEccCC-
Confidence 22333456687 788888999998655 2 34444422233468999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
.|..|+++ |.+. ..+++...+.+.. ........+++++|||+|.+|+|+|..|...+.. |+++.+.+..
T Consensus 116 --~p~~p~i~---g~~~--~~v~~~~~~~~~~-~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~ 184 (452)
T 2cdu_A 116 --KPTVPPIP---GIDS--SRVYLCKNYNDAK-KLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERV 184 (452)
T ss_dssp --EECCCCCT---TTTS--TTEEECSSHHHHH-HHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSST
T ss_pred --CcCCCCCC---CCCC--CCEEEeCcHHHHH-HHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCch
Confidence 47777777 6542 2355533332211 1112334689999999999999999999888765 9999998753
Q ss_pred cccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccc
Q 014821 242 NIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSC 321 (418)
Q Consensus 242 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (418)
+..... . .
T Consensus 185 l~~~~~-------~----~------------------------------------------------------------- 192 (452)
T 2cdu_A 185 LYKYFD-------K----E------------------------------------------------------------- 192 (452)
T ss_dssp TTTTSC-------H----H-------------------------------------------------------------
T ss_pred hhhhhh-------h----h-------------------------------------------------------------
Confidence 221211 0 0
Q ss_pred cccccCcchhhhhccCcEEEeccC-ceeEec--CcE--EEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-
Q 014821 322 LTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGI--VVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG- 395 (418)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~v--~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~- 395 (418)
+.+.+.+.+++.+|+++.+. +.+++. +.+ ...+|++ +++|.||+|||++|+..+++ .. +.
T Consensus 193 ----~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~-i~~D~vv~a~G~~p~~~ll~--------~~-l~~ 258 (452)
T 2cdu_A 193 ----FTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKE-IKSDIAILCIGFRPNTELLK--------GK-VAM 258 (452)
T ss_dssp ----HHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCE-EEESEEEECCCEEECCGGGT--------TT-SCB
T ss_pred ----HHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCE-EECCEEEECcCCCCCHHHHH--------Hh-hhc
Confidence 01112235566678888886 777764 333 2347877 99999999999999965332 22 22
Q ss_pred CCCCCccceeeeeeccCcccc
Q 014821 396 SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.++.+.++..+.++.||||.
T Consensus 259 ~~~G~i~Vd~~~~t~~~~IyA 279 (452)
T 2cdu_A 259 LDNGAIITDEYMHSSNRDIFA 279 (452)
T ss_dssp CTTSCBCCCTTSBCSSTTEEE
T ss_pred CCCCCEEECCCcCcCCCCEEE
Confidence 346778888878778999985
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=210.71 Aligned_cols=264 Identities=16% Similarity=0.161 Sum_probs=172.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.++||+|||||++|+++|..|++.|. +|+++|++. |..|... .+. ..+ .......++
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~----~l~-----~~~----------~~~~~~~~~ 61 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP----MLS-----TGF----------SKNKDADGL 61 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG----GGG-----GTT----------TTTCCHHHH
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc----ccc-----HHH----------hCCCCHHHh
Confidence 36899999999999999999999884 689999864 3222220 000 000 001122233
Q ss_pred H-HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 80 L-DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 80 ~-~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
. .++...++++++ .++.+++|..++... ++|.+.+ .++.||+||+||
T Consensus 62 ~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~------------------------~~v~~~~------~~~~~d~lviAt 109 (384)
T 2v3a_A 62 AMAEPGAMAEQLNA--RILTHTRVTGIDPGH------------------------QRIWIGE------EEVRYRDLVLAW 109 (384)
T ss_dssp EEECHHHHHHHTTC--EEECSCCCCEEEGGG------------------------TEEEETT------EEEECSEEEECC
T ss_pred hccCHHHHHHhCCc--EEEeCCEEEEEECCC------------------------CEEEECC------cEEECCEEEEeC
Confidence 2 245666677788 777788888887655 4566543 369999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+ .|..|+++ |.+. ..++++..+.+.. ........+++++|||+|.+|+|+|..|...+.. |+++.+.
T Consensus 110 G~---~p~~p~i~---g~~~--~~v~~~~~~~~~~-~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~ 177 (384)
T 2v3a_A 110 GA---EPIRVPVE---GDAQ--DALYPINDLEDYA-RFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPC 177 (384)
T ss_dssp CE---EECCCCCB---STTT--TCEEECSSHHHHH-HHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred CC---CcCCCCCC---CcCc--CCEEEECCHHHHH-HHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 95 46777777 6532 2355544432211 0112344589999999999999999999998765 9999987
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+. +.+... +. .
T Consensus 178 ~~-~~~~~~------~~----~---------------------------------------------------------- 188 (384)
T 2v3a_A 178 EQ-VMPGLL------HP----A---------------------------------------------------------- 188 (384)
T ss_dssp SS-SSTTTS------CH----H----------------------------------------------------------
T ss_pred cc-hhhccc------CH----H----------------------------------------------------------
Confidence 75 333211 00 0
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEec--C--cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhh
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL 393 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~--~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~ 393 (418)
+.+.+.+.+++.+++++.+. +..++. + .+.+++|++ +++|.||+|+|++++..++ +...
T Consensus 189 -------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~d~vv~a~G~~p~~~l~--------~~~g 252 (384)
T 2v3a_A 189 -------AAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEV-IPCDLVVSAVGLRPRTELA--------FAAG 252 (384)
T ss_dssp -------HHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCE-EEESEEEECSCEEECCHHH--------HHTT
T ss_pred -------HHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCE-EECCEEEECcCCCcCHHHH--------HHCC
Confidence 01112334556678888775 666653 2 367788988 9999999999999995433 3333
Q ss_pred cCCCCCCccceeeeeeccCcccc
Q 014821 394 AGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+...++ +.++..+.++.||||.
T Consensus 253 ~~~~~g-i~vd~~~~t~~~~IyA 274 (384)
T 2v3a_A 253 LAVNRG-IVVDRSLRTSHANIYA 274 (384)
T ss_dssp CCBSSS-EEECTTCBCSSTTEEE
T ss_pred CCCCCC-EEECCCCCCCCCCEEE
Confidence 323344 7787777788999985
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=214.06 Aligned_cols=280 Identities=16% Similarity=0.192 Sum_probs=169.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccc-cccCCCCCCCCC--CCCCCCh
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQL-YQFSDYPWPDSV--TTDFPDH 76 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~ 76 (418)
+++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+...... +.+...++..+. .......
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 81 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence 4789999999999999999999999999999997 79999876 2332221111110 001111111000 0111112
Q ss_pred hHHH-------HHHH-----HHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 77 NQVL-------DYIQ-----SYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 77 ~~~~-------~~l~-----~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
..+. .+++ ...+++ ++ .+.. .++..++. ..+.|...+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~-g~~~~~~~------------------------~~~~v~~~~--- 131 (467)
T 1zk7_A 82 SKLLAQQQARVDELRHAKYEGILGGNPAI--TVVH-GEARFKDD------------------------QSLTVRLNE--- 131 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCTTE--EEEE-EEEEEEET------------------------TEEEEEETT---
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhccCCe--EEEE-EEEEEccC------------------------CEEEEEeCC---
Confidence 2222 2222 222333 44 4444 34555542 235555533
Q ss_pred CceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 144 HSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
+...++.||+||+|||+ .|..|+++ |.+.. .++++.+.. .....+++|+|||+|.+|+|+|..|.
T Consensus 132 g~~~~~~~d~lviAtGs---~p~~p~i~---G~~~~--~~~~~~~~~-------~~~~~~~~vvViGgG~~g~E~A~~l~ 196 (467)
T 1zk7_A 132 GGERVVMFDRCLVATGA---SPAVPPIP---GLKES--PYWTSTEAL-------ASDTIPERLAVIGSSVVALELAQAFA 196 (467)
T ss_dssp SSEEEEECSEEEECCCE---EECCCCCT---TTTTS--CCBCHHHHH-------HCSSCCSEEEEECCSHHHHHHHHHHH
T ss_pred CceEEEEeCEEEEeCCC---CCCCCCCC---CCCcC--ceecHHHHh-------cccccCCEEEEECCCHHHHHHHHHHH
Confidence 23357999999999995 47777777 65432 123322211 12234789999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+.+. ++| .. ..
T Consensus 197 ~~g~~---Vtlv~~~~~-~l~-~~-----------~~------------------------------------------- 217 (467)
T 1zk7_A 197 RLGSK---VTVLARNTL-FFR-ED-----------PA------------------------------------------- 217 (467)
T ss_dssp HTTCE---EEEECSSCT-TTT-SC-----------HH-------------------------------------------
T ss_pred HcCCE---EEEEEECCc-cCC-CC-----------HH-------------------------------------------
Confidence 88765 999999875 333 22 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcCCceeeeccEEEEccCCCCCc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+.+.+++.+|+++.+. +..++.+ . +.++ +.+ +++|.||+|+|+.++.
T Consensus 218 ----------------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~-i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 218 ----------------------IGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGE-LRADKLLVATGRTPNT 273 (467)
T ss_dssp ----------------------HHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEE-EEESEEEECSCEEESC
T ss_pred ----------------------HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcE-EEcCEEEECCCCCcCC
Confidence 01112234555678888775 6666532 2 4444 556 9999999999999885
Q ss_pred chhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 379 KLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
... .+....+. +.++.+.++..+.++.|+||.
T Consensus 274 ~~l------~l~~~gl~~~~~G~i~vd~~~~t~~~~iya 306 (467)
T 1zk7_A 274 RSL------ALDAAGVTVNAQGAIVIDQGMRTSNPNIYA 306 (467)
T ss_dssp TTS------CGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred CcC------CchhcCCcCCCCCCEEECCCcccCCCCEEE
Confidence 421 12222222 335668888777778999986
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=216.82 Aligned_cols=281 Identities=13% Similarity=0.117 Sum_probs=171.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-----cCCCCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-----FSDYPWPDSVTTDFPD 75 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (418)
++||+|||||++|+++|..|++.|.+|+|||+.+.+||.|.. +.|...+......+. +..+.++.. .....+
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGG-EGVTMD 80 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECG-GGCEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccC-CCCccC
Confidence 489999999999999999999999999999998899998875 222211111000000 000001000 000011
Q ss_pred hhHHH-----------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+. ..+....++.++ .++.++. ..++. +.+.|...+ |
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~-~~i~~------------------------~~~~v~~~~---G 130 (468)
T 2qae_A 81 SAKMQQQKERAVKGLTGGVEYLFKKNKV--TYYKGEG-SFETA------------------------HSIRVNGLD---G 130 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEE-EEEET------------------------TEEEEEETT---S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEE-EEeeC------------------------CEEEEEecC---C
Confidence 12222 223445555676 6666543 33432 235555433 2
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
...++.||+||+|||+ .|..|+++ |.+. ..++++.++... ...+++++|||+|.+|+|+|..|..
T Consensus 131 ~~~~~~~d~lviAtG~---~p~~p~~~---g~~~--~~v~t~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~ 195 (468)
T 2qae_A 131 KQEMLETKKTIIATGS---EPTELPFL---PFDE--KVVLSSTGALAL-------PRVPKTMVVIGGGVIGLELGSVWAR 195 (468)
T ss_dssp CEEEEEEEEEEECCCE---EECCBTTB---CCCS--SSEECHHHHHTC-------SSCCSEEEEECCSHHHHHHHHHHHH
T ss_pred ceEEEEcCEEEECCCC---CcCCCCCC---CCCc--CceechHHHhhc-------ccCCceEEEECCCHHHHHHHHHHHH
Confidence 2357999999999995 46777666 5432 124444333221 1357899999999999999999998
Q ss_pred hcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhc
Q 014821 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (418)
Q Consensus 225 ~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
.+.. |+++.+.+. ++|... . .
T Consensus 196 ~g~~---Vtlv~~~~~-~l~~~d-------~----~-------------------------------------------- 216 (468)
T 2qae_A 196 LGAE---VTVVEFAPR-CAPTLD-------E----D-------------------------------------------- 216 (468)
T ss_dssp TTCE---EEEECSSSS-SSTTSC-------H----H--------------------------------------------
T ss_pred hCCE---EEEEecCCc-ccccCC-------H----H--------------------------------------------
Confidence 8765 999999875 333322 0 0
Q ss_pred ccCCCCCcccccccccccccccCcchhhhh-ccCcEEEeccC-ceeEecC--c--EEEc--CC--ceeeeccEEEEccCC
Q 014821 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKV-EEGSIILKKSQ-DFSFCED--G--IVVD--GQ--TTPLKTDLVILATGF 374 (418)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-v~~~~~~--~--v~~~--~g--~~~~~~D~Vi~atG~ 374 (418)
+.+.+.+.+ ++.+|+++.+. +..++.+ + +.++ +| ++ +++|.||+|+|+
T Consensus 217 ---------------------~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~-i~~D~vv~a~G~ 274 (468)
T 2qae_A 217 ---------------------VTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRET-VTCEALLVSVGR 274 (468)
T ss_dssp ---------------------HHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEE-EEESEEEECSCE
T ss_pred ---------------------HHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEE-EECCEEEECCCc
Confidence 011122345 55678888875 7777643 2 4554 66 45 999999999999
Q ss_pred CCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+..+.. ++...+. +..+.+.++..+.++.||||.
T Consensus 275 ~p~~~~l~------l~~~gl~~~~~G~i~vd~~~~t~~~~IyA 311 (468)
T 2qae_A 275 RPFTGGLG------LDKINVAKNERGFVKIGDHFETSIPDVYA 311 (468)
T ss_dssp EECCTTSC------HHHHTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred ccCCCCCC------chhcCCccCCCCCEeECCCcccCCCCEEE
Confidence 99954311 2222222 335678888777788999985
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=217.66 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=172.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-----cCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-----FSDYPWPDSVTTDFP 74 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~ 74 (418)
.++||+|||||++|+++|..|++.|.+|+|||+.+.+||.|.. +.|...+......+. +..+.++.. ... .
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~-~ 82 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS-NVE-I 82 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES-CEE-E
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccC-CCc-c
Confidence 4689999999999999999999999999999998889998865 222211111000000 000000000 000 0
Q ss_pred ChhH-----------HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 75 DHNQ-----------VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 75 ~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
+... +...+...+++.++ .+++++.+. ++ . +.+.|...+
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~--~----------------------~~~~v~~~~--- 132 (470)
T 1dxl_A 83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKV--TYVKGYGKF-VS--P----------------------SEISVDTIE--- 132 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-EE--T----------------------TEEEECCSS---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-ec--C----------------------CEEEEEeCC---
Confidence 1111 22234455556677 677765443 33 2 335554432
Q ss_pred CceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 144 HSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
|...++.||+||+|||+. |..|+++ |.+. ..++++.+..... ..+++|+|||+|.+|+|+|..|.
T Consensus 133 G~~~~i~~d~lIiAtGs~---p~~p~~~---g~~~--~~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~A~~l~ 197 (470)
T 1dxl_A 133 GENTVVKGKHIIIATGSD---VKSLPGV---TIDE--KKIVSSTGALALS-------EIPKKLVVIGAGYIGLEMGSVWG 197 (470)
T ss_dssp SCCEEEECSEEEECCCEE---ECCBTTB---CCCS--SSEECHHHHTTCS-------SCCSEEEESCCSHHHHHHHHHHH
T ss_pred CceEEEEcCEEEECCCCC---CCCCCCC---CCCc--ccEEeHHHhhhhh-------hcCCeEEEECCCHHHHHHHHHHH
Confidence 223579999999999964 6666666 5432 1355544433321 35789999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+++. ++|... ..+
T Consensus 198 ~~g~~---Vtli~~~~~-~l~~~~-----------~~~------------------------------------------ 220 (470)
T 1dxl_A 198 RIGSE---VTVVEFASE-IVPTMD-----------AEI------------------------------------------ 220 (470)
T ss_dssp HHTCE---EEEECSSSS-SSTTSC-----------HHH------------------------------------------
T ss_pred HcCCc---EEEEEcCCc-cccccc-----------HHH------------------------------------------
Confidence 88765 999999875 333222 000
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc----EEEc---CC--ceeeeccEEEEccC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVD---GQ--TTPLKTDLVILATG 373 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~----v~~~---~g--~~~~~~D~Vi~atG 373 (418)
.+.+.+.+++.+|+++.+. +..++.++ +.++ +| ++ +++|.||+|+|
T Consensus 221 -----------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-~~~D~vv~a~G 276 (470)
T 1dxl_A 221 -----------------------RKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTI-IEADVVLVSAG 276 (470)
T ss_dssp -----------------------HHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEE-EEESEEECCCC
T ss_pred -----------------------HHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceE-EECCEEEECCC
Confidence 0111234455567777775 66776432 3443 45 55 99999999999
Q ss_pred CCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 374 FKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++|+..+.. +....+. +.++.+.++..+.++.|+||.
T Consensus 277 ~~p~~~~l~------~~~~gl~~~~~G~i~vd~~~~t~~~~Iya 314 (470)
T 1dxl_A 277 RTPFTSGLN------LDKIGVETDKLGRILVNERFSTNVSGVYA 314 (470)
T ss_dssp EEECCTTSC------CTTTTCCBCSSSCBCCCTTCBCSSTTEEE
T ss_pred CCcCCCCCC------chhcCCccCCCCCEeECcCCccCCCCEEE
Confidence 999955411 1222222 335678888777788999985
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-25 Score=219.33 Aligned_cols=273 Identities=14% Similarity=0.185 Sum_probs=167.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc-----ccCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY-----QFSDYPWPDSVTTDFP 74 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~ 74 (418)
+++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+......+ ....+.+.. .....
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~--~~~~~ 79 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT--TINKF 79 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE--EEEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccC--CCCcc
Confidence 3689999999999999999999999999999996 78998865 22322111110000 000011100 00011
Q ss_pred ChhHHHHHH-----------HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 75 DHNQVLDYI-----------QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 75 ~~~~~~~~l-----------~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
+...+..+. ....++.++ .+..+ ++..++. +.|.+ ++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~i~~--------------------------~~v~~-~g-- 127 (450)
T 1ges_A 80 NWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKG-FARFVDA--------------------------KTLEV-NG-- 127 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CCEEEET--------------------------TEEEE-TT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEecC--------------------------CEEEE-CC--
Confidence 122333222 222344455 44443 3444431 23555 33
Q ss_pred CceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 144 HSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
.++.||+||+|||+ .|..|+++ |.+. ++++..+.. ....+++|+|||+|.+|+|+|..|.
T Consensus 128 ---~~~~~d~lviAtGs---~p~~p~i~---g~~~----~~~~~~~~~-------~~~~~~~vvViGgG~~g~e~A~~l~ 187 (450)
T 1ges_A 128 ---ETITADHILIATGG---RPSHPDIP---GVEY----GIDSDGFFA-------LPALPERVAVVGAGYIGVELGGVIN 187 (450)
T ss_dssp ---EEEEEEEEEECCCE---EECCCCST---TGGG----SBCHHHHHH-------CSSCCSEEEEECCSHHHHHHHHHHH
T ss_pred ---EEEEeCEEEECCCC---CCCCCCCC---Cccc----eecHHHhhh-------hhhcCCeEEEECCCHHHHHHHHHHH
Confidence 57999999999995 47777777 6531 222222211 1234789999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+++. +++... . .+
T Consensus 188 ~~g~~---Vtlv~~~~~-~l~~~~-------~----~~------------------------------------------ 210 (450)
T 1ges_A 188 GLGAK---THLFEMFDA-PLPSFD-------P----MI------------------------------------------ 210 (450)
T ss_dssp HTTCE---EEEECSSSS-SSTTSC-------H----HH------------------------------------------
T ss_pred hcCCE---EEEEEeCCc-hhhhhh-------H----HH------------------------------------------
Confidence 88765 999998875 333221 0 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.+++.+|+++.+. +..++.+ .+.+++|++ +++|.||+|+|++|+
T Consensus 211 -----------------------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~-i~~D~vv~a~G~~p~ 266 (450)
T 1ges_A 211 -----------------------SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRS-ETVDCLIWAIGREPA 266 (450)
T ss_dssp -----------------------HHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCE-EEESEEEECSCEEES
T ss_pred -----------------------HHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcE-EEcCEEEECCCCCcC
Confidence 0111233444567777775 6666532 367788988 999999999999998
Q ss_pred cchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.+ .++...+. +.++.+.++..+.++.||||.
T Consensus 267 ~~~l------~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA 300 (450)
T 1ges_A 267 NDNI------NLEAAGVKTNEKGYIVVDKYQNTNIEGIYA 300 (450)
T ss_dssp CTTS------CHHHHTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred CCCC------CchhcCceECCCCCEeECCCCccCCCCEEE
Confidence 5311 12222232 336778888877889999995
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=216.30 Aligned_cols=274 Identities=15% Similarity=0.136 Sum_probs=169.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFP 74 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~ 74 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+.. +||.|.. +.|...+......+ .+..+.++. ....
T Consensus 4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~---~~~~ 79 (464)
T 2eq6_A 4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKA---KPEL 79 (464)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEEC---CCEE
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCC---CCCc
Confidence 445899999999999999999999999999999976 8998865 22222111111000 011111110 0011
Q ss_pred ChhHHH-------HH----HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 75 DHNQVL-------DY----IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 75 ~~~~~~-------~~----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
+...+. ++ +....++.++ .+..++. ..++ . ++|.+. +
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~-~~~~--~------------------------~~v~v~-g-- 127 (464)
T 2eq6_A 80 DLKKLGGWRDQVVKKLTGGVGTLLKGNGV--ELLRGFA-RLVG--P------------------------KEVEVG-G-- 127 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCE-EEEE--T------------------------TEEEET-T--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEeeeE-EEcc--C------------------------CEEEEc-c--
Confidence 112222 22 2334455566 5665443 3332 2 235554 3
Q ss_pred CceeEEEeCEEEEeeccCCCCCCCCC-CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 144 HSTEVHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~~~p~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
.++.||+||+|||+. |..|+ ++ +.. .++++.++.... ...+++|+|||+|.+|+|+|..|
T Consensus 128 ---~~~~~d~lViATGs~---p~~p~gi~---~~~----~v~~~~~~~~l~------~~~~~~vvViGgG~~g~e~A~~l 188 (464)
T 2eq6_A 128 ---ERYGAKSLILATGSE---PLELKGFP---FGE----DVWDSTRALKVE------EGLPKRLLVIGGGAVGLELGQVY 188 (464)
T ss_dssp ---EEEEEEEEEECCCEE---ECCBTTBC---CSS----SEECHHHHTCGG------GCCCSEEEEECCSHHHHHHHHHH
T ss_pred ---EEEEeCEEEEcCCCC---CCCCCCCC---CCC----cEEcHHHHHhhh------hhcCCEEEEECCCHHHHHHHHHH
Confidence 479999999999954 66664 55 421 355554444322 12478999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...+.. |+++.+.+. ++|... ..
T Consensus 189 ~~~g~~---Vtlv~~~~~-~l~~~~-----------~~------------------------------------------ 211 (464)
T 2eq6_A 189 RRLGAE---VTLIEYMPE-ILPQGD-----------PE------------------------------------------ 211 (464)
T ss_dssp HHTTCE---EEEECSSSS-SSTTSC-----------HH------------------------------------------
T ss_pred HHCCCe---EEEEEcCCc-cccccC-----------HH------------------------------------------
Confidence 988765 999999875 333221 00
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEc-C--Cc--eeeeccEEEEcc
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVD-G--QT--TPLKTDLVILAT 372 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~-~--g~--~~~~~D~Vi~at 372 (418)
+.+.+.+.+++.+|+++.+. +..++.+ + +.++ + |+ + +++|.||+|+
T Consensus 212 -----------------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vv~a~ 267 (464)
T 2eq6_A 212 -----------------------TAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEE-VVVDKVLVAV 267 (464)
T ss_dssp -----------------------HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEE-EEESEEEECS
T ss_pred -----------------------HHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeE-EEcCEEEECC
Confidence 00112234455678888875 6666532 2 5555 6 76 6 9999999999
Q ss_pred CCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 373 GFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 373 G~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|++|+..+. .+....+. +.++.+.++..+.++.|+||.
T Consensus 268 G~~p~~~~l------~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya 306 (464)
T 2eq6_A 268 GRKPRTEGL------GLEKAGVKVDERGFIRVNARMETSVPGVYA 306 (464)
T ss_dssp CEEESCTTS------SHHHHTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred CcccCCCCC------ChhhcCceecCCCCEEECCCcccCCCCEEE
Confidence 999985432 02222222 345678888777788999985
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=209.50 Aligned_cols=268 Identities=16% Similarity=0.172 Sum_probs=170.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+||+|||||++|+++|..|++. +.+|+|||+.+.++.. .... + .+.. .......++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~-------~----~~~~--------~~~~~~~~~~~ 60 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAGM-------Q----LYLE--------GKVKDVNSVRY 60 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGGH-------H----HHHT--------TSSCCGGGSBS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-cccc-------h----hhhc--------CccCCHHHhhc
Confidence 4899999999999999999997 8999999998755411 0000 0 0000 00001111111
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++....+++++ .+++++.|..++... + .|.+.+..++...++.||+||+|||+
T Consensus 61 ~~~~~~~~~gv--~~~~~~~v~~i~~~~----------------------~--~v~~~~~~~g~~~~~~~d~lviAtG~- 113 (447)
T 1nhp_A 61 MTGEKMESRGV--NVFSNTEITAIQPKE----------------------H--QVTVKDLVSGEERVENYDKLIISPGA- 113 (447)
T ss_dssp CCHHHHHHTTC--EEEETEEEEEEETTT----------------------T--EEEEEETTTCCEEEEECSEEEECCCE-
T ss_pred CCHHHHHHCCC--EEEECCEEEEEeCCC----------------------C--EEEEEecCCCceEEEeCCEEEEcCCC-
Confidence 22333455677 788889999988655 2 35554422233346999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhc--CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLV--KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|+++ |.+. ..+++...+.+.. ....... .+++++|||+|.+|+|+|..|...+.. |+++.+.+
T Consensus 114 --~p~~p~i~---G~~~--~~v~~~~~~~~~~-~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~ 182 (447)
T 1nhp_A 114 --VPFELDIP---GKDL--DNIYLMRGRQWAI-KLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILD 182 (447)
T ss_dssp --EECCCCST---TTTS--BSEECCCHHHHHH-HHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSS
T ss_pred --CcCCCCCC---CCCC--CCeEEECCHHHHH-HHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCc
Confidence 47777777 6542 2355433322111 0011222 689999999999999999999988765 99999987
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
. +++... +. .
T Consensus 183 ~-~l~~~~------~~----~----------------------------------------------------------- 192 (447)
T 1nhp_A 183 R-PLGVYL------DK----E----------------------------------------------------------- 192 (447)
T ss_dssp S-TTTTTC------CH----H-----------------------------------------------------------
T ss_pred c-cccccC------CH----H-----------------------------------------------------------
Confidence 5 222111 00 0
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEecCc----EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~----v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~ 394 (418)
+.+.+.+.+++.+|+++.+. +..++.++ +.+ +|++ +++|.||+|||++|+..+.+ .. +
T Consensus 193 ------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~-i~~d~vi~a~G~~p~~~~~~--------~~-~ 255 (447)
T 1nhp_A 193 ------FTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNA-YDADLVVVAVGVRPNTAWLK--------GT-L 255 (447)
T ss_dssp ------HHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCE-EECSEEEECSCEEESCGGGT--------TT-S
T ss_pred ------HHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCE-EECCEEEECcCCCCChHHHH--------hh-h
Confidence 01112335566678888875 77776542 444 5667 99999999999999854332 22 2
Q ss_pred C-CCCCCccceeeeeeccCcccc
Q 014821 395 G-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 395 ~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
. +.++.+.++..+.++.|+||.
T Consensus 256 ~~~~~G~i~Vd~~~~t~~~~Iya 278 (447)
T 1nhp_A 256 ELHPNGLIKTDEYMRTSEPDVFA 278 (447)
T ss_dssp CBCTTSCBCCCTTCBCSSTTEEE
T ss_pred hhcCCCcEEECccccCCCCCEEE
Confidence 1 345668888777778899985
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-24 Score=212.79 Aligned_cols=277 Identities=11% Similarity=0.135 Sum_probs=169.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..|++.|.+|+|||+. .+||.|.. +.|...+......+ .+..+.++.. .. ..+.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~-~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAE-NV-TIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECC-SC-EECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccC-CC-ccCH
Confidence 589999999999999999999999999999997 78988764 22221111000000 0000011000 00 0111
Q ss_pred hH-----------HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQ-----------VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
.. +..++...++++++ .++.++.+ .++ . +.+.|...++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~-~id--~----------------------~~v~V~~~~G---- 128 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKV--EIVKGEAY-FVD--A----------------------NTVRVVNGDS---- 128 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEESEEE-EEE--T----------------------TEEEEEETTE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Ecc--C----------------------CeEEEEeCCC----
Confidence 11 23334555666677 66665543 343 2 3366655432
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
..++.||+||+|||+. |..|+++ |.+. .++++.+... ....+++|+|||+|.+|+|+|..|...
T Consensus 129 ~~~i~~d~lViATGs~---p~~~~~~---g~~~---~v~~~~~~~~-------~~~~~~~vvViGgG~~g~e~A~~l~~~ 192 (455)
T 1ebd_A 129 AQTYTFKNAIIATGSR---PIELPNF---KFSN---RILDSTGALN-------LGEVPKSLVVIGGGYIGIELGTAYANF 192 (455)
T ss_dssp EEEEECSEEEECCCEE---ECCBTTB---CCCS---SEECHHHHHT-------CSSCCSEEEEECCSHHHHHHHHHHHHT
T ss_pred cEEEEeCEEEEecCCC---CCCCCCC---Cccc---eEecHHHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 1579999999999954 6666666 5432 2444433222 113478999999999999999999988
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.+.+. ++|... . .+
T Consensus 193 g~~---Vtlv~~~~~-~l~~~~-------~----~~-------------------------------------------- 213 (455)
T 1ebd_A 193 GTK---VTILEGAGE-ILSGFE-------K----QM-------------------------------------------- 213 (455)
T ss_dssp TCE---EEEEESSSS-SSTTSC-------H----HH--------------------------------------------
T ss_pred CCc---EEEEEcCCc-cccccC-------H----HH--------------------------------------------
Confidence 765 999999875 333221 0 00
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cE--EEc---CCceeeeccEEEEccCCCCC
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GI--VVD---GQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v--~~~---~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.+++.+|+++.+. +..++.+ ++ .++ ++++ +++|.||+|+|++|+
T Consensus 214 ---------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~-~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 214 ---------------------AAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKT-IDADYVLVTVGRRPN 271 (455)
T ss_dssp ---------------------HHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEE-EEESEEEECSCEEES
T ss_pred ---------------------HHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeE-EEcCEEEECcCCCcc
Confidence 0111234455567787775 6666532 23 443 4456 999999999999998
Q ss_pred cchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..++. ++...+. +.++.+.++..+.++.|+||.
T Consensus 272 ~~~l~------~~~~g~~~~~~G~i~vd~~~~t~~~~Iya 305 (455)
T 1ebd_A 272 TDELG------LEQIGIKMTNRGLIEVDQQCRTSVPNIFA 305 (455)
T ss_dssp CSSSS------TTTTTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred cCcCC------hhhcCCccCCCCCEeeCCCcccCCCCEEE
Confidence 54311 1222222 335678888777788999985
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-24 Score=208.68 Aligned_cols=265 Identities=14% Similarity=0.072 Sum_probs=171.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++|+|||||++|+++|..|++ .+.+|+|||+++.++.. +. .++. ........++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~-----~~--------------~~~~---~~~~~~~~~~~ 59 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR-----PA--------------LPHV---AIGVRDVDELK 59 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC-----CS--------------SCCC---CSSCCCCCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec-----cc--------------hhhc---ccCCcCHHHHH
Confidence 689999999999999999999 89999999998733211 00 0000 01111223344
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++.+.++++++ .+..+ +|+.++... ..|++.++. +...++.||+||+|||.
T Consensus 60 ~~~~~~~~~~gv--~~~~~-~v~~i~~~~------------------------~~V~~~~g~-~~~~~~~~d~lViAtG~ 111 (409)
T 3h8l_A 60 VDLSEALPEKGI--QFQEG-TVEKIDAKS------------------------SMVYYTKPD-GSMAEEEYDYVIVGIGA 111 (409)
T ss_dssp EEHHHHTGGGTC--EEEEC-EEEEEETTT------------------------TEEEEECTT-SCEEEEECSEEEECCCC
T ss_pred HHHHHHHhhCCe--EEEEe-eEEEEeCCC------------------------CEEEEccCC-cccceeeCCEEEECCCC
Confidence 456666677787 66654 898888655 356666642 33457999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhh-cCCCEEEEEcCCC-------------------------C
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANL-VKGKRVTVVGLQK-------------------------S 214 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~VvG~G~-------------------------s 214 (418)
.|..|.++ |.+. ...+...+..... ..... ...++++|||+|. .
T Consensus 112 ---~~~~~~ip---G~~~---~~~~~~~~~~~~~-~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~ 181 (409)
T 3h8l_A 112 ---HLATELVK---GWDK---YGYSVCEPEFATK-LREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGP 181 (409)
T ss_dssp ---EECGGGSB---THHH---HCEESSSTTHHHH-HHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHH
T ss_pred ---CcCccCCC---Chhh---cCcCcCCHHHHHH-HHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCH
Confidence 46666666 6553 2333333322110 00111 1126677999992 3
Q ss_pred HHHHHHHHh----hhcCC-CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHH
Q 014821 215 ALDIAMECT----TANGL-ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAI 289 (418)
Q Consensus 215 a~e~a~~l~----~~~~~-~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (418)
++|+|..+. ..+.. ..+|+++++.+ +++... ..
T Consensus 182 ~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~--~l~~~~-----------~~----------------------------- 219 (409)
T 3h8l_A 182 VFEMSLMLHGYFKKKGMLDKVHVTVFSPGE--YLSDLS-----------PN----------------------------- 219 (409)
T ss_dssp HHHHHHHHHHHHHTTTCTTTEEEEEECSSS--SSTTBC-----------HH-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEeCCc--cccccC-----------HH-----------------------------
Confidence 778886654 33320 12589998876 333221 00
Q ss_pred HHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEE
Q 014821 290 SKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLV 368 (418)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~V 368 (418)
+.+.+.+.+++.+|+++.+. |.+++.++|++++|++ +++|.|
T Consensus 220 ------------------------------------~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~-~~~D~v 262 (409)
T 3h8l_A 220 ------------------------------------SRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNT-IPADIT 262 (409)
T ss_dssp ------------------------------------HHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCE-EECSEE
T ss_pred ------------------------------------HHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCE-EeeeEE
Confidence 01112334556678999876 8899999999999998 999999
Q ss_pred EEccCCCCCcchhccccchhhhhh--hcCCCCCCccceeee-eeccCcccc
Q 014821 369 ILATGFKGDVKLKNIFLSQTFQDY--LAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 369 i~atG~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|+|+|+.++ .++... .+.+.++.+.++..+ .+++||||.
T Consensus 263 i~a~G~~~~---------~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa 304 (409)
T 3h8l_A 263 ILLPPYTGN---------PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYA 304 (409)
T ss_dssp EEECCEECC---------HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEE
T ss_pred EECCCCCcc---------HHHHhccccCcCCCCCEEeCcccccCCCCCEEE
Confidence 999999988 334443 333567889998887 669999995
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-24 Score=215.93 Aligned_cols=281 Identities=15% Similarity=0.204 Sum_probs=173.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHh-CCCceEEEe--------eCCCCCccccc--cCCcceecCCcccc----ccCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLL-KGFHPIVFE--------ARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPW 65 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie--------~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~ 65 (418)
|.++||+|||||++|+++|..|++ .|.+|+||| +...+||.|.. +.|...+......+ ....+.+
T Consensus 1 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred CccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 467899999999999999999999 999999999 34678998765 33332221111110 0111111
Q ss_pred CCCCCCC--CCChhHHHHH-----------HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 66 PDSVTTD--FPDHNQVLDY-----------IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~-----------l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
... .. ..+...+.++ +....+++ ++ .+..+ .+..++..
T Consensus 81 ~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g-~~~~i~~~----------------------- 132 (490)
T 1fec_A 81 ELD--RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL--TFHQG-FGALQDNH----------------------- 132 (490)
T ss_dssp ECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTE--EEEES-EEEEEETT-----------------------
T ss_pred ccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEe-EEEEeeCC-----------------------
Confidence 100 00 1122233322 23334455 65 55553 45555421
Q ss_pred CceEEEEecC--CCCc-eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEE
Q 014821 132 GKWTVAVEDA--KNHS-TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTV 208 (418)
Q Consensus 132 ~~~~v~~~~~--~~~~-~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 208 (418)
++.+... .++. ..++.||+||+|||+ .|..|+++ |.+ .++++..+... ...+++++|
T Consensus 133 ---~v~v~~~~~~~g~~~~~~~~d~lviAtGs---~p~~p~i~---g~~----~~~~~~~~~~~-------~~~~~~vvV 192 (490)
T 1fec_A 133 ---TVLVRESADPNSAVLETLDTEYILLATGS---WPQHLGIE---GDD----LCITSNEAFYL-------DEAPKRALC 192 (490)
T ss_dssp ---EEEEESSSSTTSCEEEEEEEEEEEECCCE---EECCCCSB---TGG----GCBCHHHHTTC-------SSCCSEEEE
T ss_pred ---EEEEEeeccCCCCceEEEEcCEEEEeCCC---CCCCCCCC---Ccc----ceecHHHHhhh-------hhcCCeEEE
Confidence 2444320 1121 257999999999995 47777777 653 12333222221 234789999
Q ss_pred EcCCCCHHHHHHHHhhh---cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHH
Q 014821 209 VGLQKSALDIAMECTTA---NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPL 285 (418)
Q Consensus 209 vG~G~sa~e~a~~l~~~---~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (418)
||+|.+|+|+|..|... +.. |+++.+.+. ++|... . .
T Consensus 193 iGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~-~l~~~d-------~----~------------------------- 232 (490)
T 1fec_A 193 VGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDM-ILRGFD-------S----E------------------------- 232 (490)
T ss_dssp ECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSS-SSTTSC-------H----H-------------------------
T ss_pred ECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCC-cccccC-------H----H-------------------------
Confidence 99999999999999988 654 999999875 333221 0 0
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCC
Q 014821 286 RWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQ 359 (418)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g 359 (418)
+...+.+.+++.+|+++.+. +..+..+ .|.+++|
T Consensus 233 ----------------------------------------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G 272 (490)
T 1fec_A 233 ----------------------------------------LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG 272 (490)
T ss_dssp ----------------------------------------HHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS
T ss_pred ----------------------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCC
Confidence 01112335566678888885 7777543 3677889
Q ss_pred ceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 360 TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 360 ~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++ +++|.||+|+|++|+...+ .+....+. +.++.+.++..+.++.|+||.
T Consensus 273 ~~-i~~D~vv~a~G~~p~~~~L------~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA 323 (490)
T 1fec_A 273 AE-ADYDVVMLAIGRVPRSQTL------QLEKAGVEVAKNGAIKVDAYSKTNVDNIYA 323 (490)
T ss_dssp CE-EEESEEEECSCEEESCTTS------CGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred cE-EEcCEEEEccCCCcCcccc------CchhcCccCCCCCCEEECCCCccCCCCEEE
Confidence 87 9999999999999985411 02222222 336778888877778999985
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-25 Score=224.40 Aligned_cols=276 Identities=16% Similarity=0.129 Sum_probs=168.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (418)
.+||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+...+..+ .+..+.++. .....+.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQV--DRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEEC--SEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCC--CCCccCH
Confidence 379999999999999999999999999999996 59998765 44433322211111 111111111 0111234
Q ss_pred hHHHHHHHHHHHhcCcc---------cceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 77 NQVLDYIQSYASHFDLR---------KHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~---------~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
.++.++++...+++... ..-.+...+... +.++|.+.++ .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~--------------------------~~~~v~~~~~-----~ 133 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFL--------------------------DEHTLQVDDH-----S 133 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEE--------------------------ETTEEEETTT-----E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEe--------------------------cCCEEEEcCC-----c
Confidence 55555555544433210 000111121111 1245666544 6
Q ss_pred EEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 014821 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~ 227 (418)
++.||+||+|||+ .|..|+++ +.. ...++++..+... ...+++|+|||+|.+|+|+|..|...+.
T Consensus 134 ~~~~d~lViATGs---~p~~p~~~---~~~--~~~v~t~~~~~~~-------~~~~k~vvViGgG~ig~E~A~~l~~~g~ 198 (492)
T 3ic9_A 134 QVIAKRIVIATGS---RPNYPEFL---AAA--GSRLLTNDNLFEL-------NDLPKSVAVFGPGVIGLELGQALSRLGV 198 (492)
T ss_dssp EEEEEEEEECCCE---ECCCCHHH---HTT--GGGEECHHHHTTC-------SSCCSEEEEESSCHHHHHHHHHHHHTTC
T ss_pred EEEeCEEEEccCC---CCcCCCCC---Ccc--CCcEEcHHHHhhh-------hhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 8999999999995 47777654 322 1235554443332 2457999999999999999999999876
Q ss_pred CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccC
Q 014821 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (418)
Q Consensus 228 ~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (418)
. |+++.|.+.. ++... . .+
T Consensus 199 ~---Vtlv~~~~~~-l~~~d-------~----~~---------------------------------------------- 217 (492)
T 3ic9_A 199 I---VKVFGRSGSV-ANLQD-------E----EM---------------------------------------------- 217 (492)
T ss_dssp E---EEEECCTTCC-TTCCC-------H----HH----------------------------------------------
T ss_pred e---EEEEEECCcc-cccCC-------H----HH----------------------------------------------
Confidence 5 9999998863 33322 0 00
Q ss_pred CCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEc--CC--ceeeeccEEEEccCCCCCc
Q 014821 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVD--GQ--TTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~--~g--~~~~~~D~Vi~atG~~~~~ 378 (418)
.+.+.+.+++. |+++.+. +..++. ++ +.+. +| ++ +++|.||+|||++|+.
T Consensus 218 -------------------~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~-i~~D~Vi~a~G~~p~~ 276 (492)
T 3ic9_A 218 -------------------KRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTT-ESFQYVLAATGRKANV 276 (492)
T ss_dssp -------------------HHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEE-EEESEEEECSCCEESC
T ss_pred -------------------HHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEE-EECCEEEEeeCCccCC
Confidence 01112344555 7777775 666653 23 4443 67 45 9999999999999996
Q ss_pred ch--hccccchhhhhhhcCCCCCCccce-eeeeeccCcccc
Q 014821 379 KL--KNIFLSQTFQDYLAGSPTEKLPLY-RSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 416 (418)
.+ ++.++.. .+.++.+.++ ..+.++.||||.
T Consensus 277 ~~l~l~~~gl~-------~~~~G~i~vd~~~~~t~~~~IyA 310 (492)
T 3ic9_A 277 DKLGLENTSIE-------LDKKNSPLFDELTLQTSVDHIFV 310 (492)
T ss_dssp SSSCGGGSCCC-------BCTTCCBCCCTTTCBCSSTTEEE
T ss_pred CCCChhhcCCE-------ECCCCCEeECcccccCCCCCEEE
Confidence 54 2222222 1346677777 666788999985
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-24 Score=216.44 Aligned_cols=281 Identities=16% Similarity=0.152 Sum_probs=169.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc-----ccCCCCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY-----QFSDYPWPDSVTTDFPD 75 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (418)
++||+|||||++|+++|..|++.|++|+|||+++.+||.|.. +.|...+......+ .+..+.++.. .....+
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~-~~~~~~ 83 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVN-GDIKIN 83 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEEC-SCEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccC-CCCccC
Confidence 589999999999999999999999999999998889998765 22221111100000 0000000000 000111
Q ss_pred hhHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+.. .+...+++.++ .+++++.+.. +. +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~~---~~----------------------~~v~V~~~~G--- 133 (478)
T 1v59_A 84 VANFQKAKDDAVKQLTGGIELLFKKNKV--TYYKGNGSFE---DE----------------------TKIRVTPVDG--- 133 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEEES---SS----------------------SEEEEECCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEEc---cC----------------------CeEEEEecCC---
Confidence 222222 23344555676 6666655431 22 3456655433
Q ss_pred ceeE------EEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHH
Q 014821 145 STEV------HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDI 218 (418)
Q Consensus 145 ~~~~------i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~ 218 (418)
...+ +.||+||+|||+.+ +.+| |.+.....++++.+..... ..+++|+|||+|.+|+|+
T Consensus 134 ~~~~~~~~~~i~~d~lViAtGs~p--~~~~------g~~~~~~~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~ 198 (478)
T 1v59_A 134 LEGTVKEDHILDVKNIIVATGSEV--TPFP------GIEIDEEKIVSSTGALSLK-------EIPKRLTIIGGGIIGLEM 198 (478)
T ss_dssp CTTCCSSCEEEEEEEEEECCCEEE--CCCT------TCCCCSSSEECHHHHTTCS-------SCCSEEEEECCSHHHHHH
T ss_pred CcccccccceEEeCEEEECcCCCC--CCCC------CCCCCCceEEcHHHHHhhh-------ccCceEEEECCCHHHHHH
Confidence 1124 99999999999762 2333 3321111355544433321 247899999999999999
Q ss_pred HHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014821 219 AMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIK 298 (418)
Q Consensus 219 a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (418)
|..|...+.. |+++.|++. ++|... ..
T Consensus 199 A~~l~~~g~~---Vtlv~~~~~-~l~~~~-----------~~-------------------------------------- 225 (478)
T 1v59_A 199 GSVYSRLGSK---VTVVEFQPQ-IGASMD-----------GE-------------------------------------- 225 (478)
T ss_dssp HHHHHHTTCE---EEEECSSSS-SSSSSC-----------HH--------------------------------------
T ss_pred HHHHHHcCCE---EEEEEeCCc-cccccC-----------HH--------------------------------------
Confidence 9999998765 999999885 333221 00
Q ss_pred hhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C----cEEEc-----CCceeeecc
Q 014821 299 KKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D----GIVVD-----GQTTPLKTD 366 (418)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~----~v~~~-----~g~~~~~~D 366 (418)
+.+.+.+.+++.+|+++.+. +..+.. + .+.++ ++++ +++|
T Consensus 226 ---------------------------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~-~~~D 277 (478)
T 1v59_A 226 ---------------------------VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQEN-LEAE 277 (478)
T ss_dssp ---------------------------HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE-EEES
T ss_pred ---------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceE-EECC
Confidence 00112234455678888775 667654 2 24554 3456 9999
Q ss_pred EEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 367 LVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 367 ~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.||+|+|++|+... .++....+. +.++.+.++..+.++.||||.
T Consensus 278 ~vv~a~G~~p~~~~------l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 322 (478)
T 1v59_A 278 VLLVAVGRRPYIAG------LGAEKIGLEVDKRGRLVIDDQFNSKFPHIKV 322 (478)
T ss_dssp EEEECSCEEECCTT------SCTTTTTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred EEEECCCCCcCCCC------CCchhcCceeCCCCCEeECcCCccCCCCEEE
Confidence 99999999999540 022222222 335678888777788999986
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-24 Score=213.98 Aligned_cols=279 Identities=18% Similarity=0.223 Sum_probs=169.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-------C--CCCccccc--cCCcceecCCcccc----ccCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-------S--DIGGAWIK--TVETTMLQTPKQLY----QFSDYPWP 66 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-------~--~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~ 66 (418)
..+||+|||||++|+++|..|++.|.+|+|||+. . .+||.|.. +.|...+..+...+ ....+.+.
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 87 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN 87 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 3589999999999999999999999999999942 1 37888876 33433222211111 01111111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHh-----------cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 67 DSVTTDFPDHNQVLDYIQSYASH-----------FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
.. .....+...+..+.+.+.+. .++ .+. ...+..++. ..+.
T Consensus 88 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~a~~~~~------------------------~~v~ 139 (483)
T 3dgh_A 88 VD-DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKV--EYI-NGLGSFVDS------------------------HTLL 139 (483)
T ss_dssp CC-CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEE-CSEEEEEET------------------------TEEE
T ss_pred cC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EeEEEEccC------------------------CEEE
Confidence 11 11223444555544444332 233 222 234433332 2244
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCH
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSA 215 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa 215 (418)
|...++ . .++.||+||+|||+ .|..|+++ |.+.+ .+++..+.. ....+++++|||+|.+|
T Consensus 140 v~~~~g---~-~~~~~d~lviATGs---~p~~p~i~---G~~~~---~~~~~~~~~-------~~~~~~~vvViGgG~~g 199 (483)
T 3dgh_A 140 AKLKSG---E-RTITAQTFVIAVGG---RPRYPDIP---GAVEY---GITSDDLFS-------LDREPGKTLVVGAGYIG 199 (483)
T ss_dssp EECTTC---C-EEEEEEEEEECCCE---EECCCSST---THHHH---CBCHHHHTT-------CSSCCCEEEEECCSHHH
T ss_pred EEeCCC---e-EEEEcCEEEEeCCC---CcCCCCCC---Ccccc---cCcHHHHhh-------hhhcCCcEEEECCCHHH
Confidence 543332 2 57999999999995 57777777 76432 233333222 12357899999999999
Q ss_pred HHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHH
Q 014821 216 LDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEA 295 (418)
Q Consensus 216 ~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (418)
+|+|..|...+.. |+++.|+. +++... . .
T Consensus 200 ~E~A~~l~~~g~~---Vtlv~~~~--~l~~~d-------~----~----------------------------------- 228 (483)
T 3dgh_A 200 LECAGFLKGLGYE---PTVMVRSI--VLRGFD-------Q----Q----------------------------------- 228 (483)
T ss_dssp HHHHHHHHHTTCE---EEEEESSC--SSTTSC-------H----H-----------------------------------
T ss_pred HHHHHHHHHcCCE---EEEEeCCC--CCcccC-------H----H-----------------------------------
Confidence 9999999998765 99999843 333222 0 0
Q ss_pred HHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc---EEEcCCc-----eeee
Q 014821 296 DIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQT-----TPLK 364 (418)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~---v~~~~g~-----~~~~ 364 (418)
+.+.+.+.+++.+|+++.+. +..+.. ++ |.+.++. + ++
T Consensus 229 ------------------------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~-~~ 277 (483)
T 3dgh_A 229 ------------------------------MAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESE-DV 277 (483)
T ss_dssp ------------------------------HHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEE-EE
T ss_pred ------------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeE-EE
Confidence 00112234455667777775 666653 22 6666553 5 89
Q ss_pred ccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 365 TDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 365 ~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|.||+|+|++|+..++. +....+....+.+.++..+.++.||||.
T Consensus 278 ~D~vi~a~G~~p~~~~l~------l~~~gl~~~~G~i~vd~~~~t~~~~IyA 323 (483)
T 3dgh_A 278 YDTVLWAIGRKGLVDDLN------LPNAGVTVQKDKIPVDSQEATNVANIYA 323 (483)
T ss_dssp ESEEEECSCEEECCGGGT------GGGTTCCCBTTBBCCCTTCBCSSTTEEE
T ss_pred cCEEEECcccccCcCcCC------chhcCccccCCEEEECcCCccCCCCEEE
Confidence 999999999999854431 1222232333778888778889999996
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=214.04 Aligned_cols=277 Identities=12% Similarity=0.146 Sum_probs=163.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcc----ccccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQ----LYQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. +.|...+..... ...+..+.+... .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~---~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK---FSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC---CCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC---CccCH
Confidence 389999999999999999999999999999997 58998865 222211110000 001111112110 11122
Q ss_pred hHHH-----------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC----
Q 014821 77 NQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA---- 141 (418)
Q Consensus 77 ~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 141 (418)
..+. .++....++.++ .+..++ +..++. +.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~id~--------------------------~~v~v~~~~~~~ 128 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKV--DLYEGT-ASFLSE--------------------------NRILIKGTKDNN 128 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-CCCC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEeeC--------------------------CEEEEEeccccc
Confidence 2222 223333445565 444432 222221 12333220
Q ss_pred ----CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 142 ----KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 142 ----~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
.++...++.||+||+|||+ .|..|+++ |.+ .++++.++.... . +++|+|||+|.+|+|
T Consensus 129 ~~~~~~~~~~~~~~d~lViAtGs---~p~~p~i~---G~~----~~~~~~~~~~~~-------~-~~~vvViGgG~ig~E 190 (500)
T 1onf_A 129 NKDNGPLNEEILEGRNILIAVGN---KPVFPPVK---GIE----NTISSDEFFNIK-------E-SKKIGIVGSGYIAVE 190 (500)
T ss_dssp ------------CBSSEEECCCC---CBCCCSCT---TGG----GCEEHHHHTTCC-------C-CSEEEEECCSHHHHH
T ss_pred cccccCCCceEEEeCEEEECCCC---CCCCCCCC---CCC----cccCHHHHhccC-------C-CCeEEEECChHHHHH
Confidence 0011247899999999994 57777777 653 245544443321 2 789999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..|...+.. |+++.|.+.. ++... . .
T Consensus 191 ~A~~l~~~g~~---Vtlv~~~~~~-l~~~d-------~----~------------------------------------- 218 (500)
T 1onf_A 191 LINVIKRLGID---SYIFARGNRI-LRKFD-------E----S------------------------------------- 218 (500)
T ss_dssp HHHHHHTTTCE---EEEECSSSSS-CTTSC-------H----H-------------------------------------
T ss_pred HHHHHHHcCCe---EEEEecCCcc-Ccccc-------h----h-------------------------------------
Confidence 99999988765 9999998753 34322 0 0
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCCceeeeccEEEEc
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILA 371 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g~~~~~~D~Vi~a 371 (418)
+.+.+.+.+++.+|+++.+. +..+..+ .+.+++|++.+++|.||+|
T Consensus 219 ----------------------------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a 270 (500)
T 1onf_A 219 ----------------------------VINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC 270 (500)
T ss_dssp ----------------------------HHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred ----------------------------hHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEEC
Confidence 01112335566678888886 7777542 3667788644899999999
Q ss_pred cCCCCCcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|++|+.+.+ .+....+....+.+.++..+.++.|+||.
T Consensus 271 ~G~~p~~~~l------~~~~~g~~~~~G~i~vd~~~~t~~~~iya 309 (500)
T 1onf_A 271 VGRSPDTENL------KLEKLNVETNNNYIVVDENQRTSVNNIYA 309 (500)
T ss_dssp CCBCCTTTTS------SCTTTTCCBSSSCEEECTTCBCSSSSEEE
T ss_pred CCCCcCCCCC------CchhcCccccCCEEEECCCcccCCCCEEE
Confidence 9999995310 01222222345667787777788999985
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=210.79 Aligned_cols=271 Identities=16% Similarity=0.224 Sum_probs=167.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++||+|||||++|+++|..|++. +.+|+|||+.+..+..... . +. ... ........+.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-~-------~~---~~~---------~~~~~~~~l~ 95 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-L-------PY---VIS---------GAIASTEKLI 95 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-H-------HH---HHT---------TSSSCGGGGB
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-c-------ch---hhc---------CCcCCHHHhh
Confidence 47999999999999999999996 8899999998755421110 0 00 000 0001111111
Q ss_pred -HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 81 -DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 81 -~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+.+.+.+++++ .++++++|..++... + .|.+.+..++...++.||+||+|||
T Consensus 96 ~~~~~~~~~~~gv--~~~~~~~v~~i~~~~----------------------~--~v~v~~~~~g~~~~~~~d~lviAtG 149 (480)
T 3cgb_A 96 ARNVKTFRDKYGI--DAKVRHEVTKVDTEK----------------------K--IVYAEHTKTKDVFEFSYDRLLIATG 149 (480)
T ss_dssp SSCHHHHHHTTCC--EEESSEEEEEEETTT----------------------T--EEEEEETTTCCEEEEECSEEEECCC
T ss_pred hcCHHHHHhhcCC--EEEeCCEEEEEECCC----------------------C--EEEEEEcCCCceEEEEcCEEEECCC
Confidence 123334455677 788889999998655 3 3444431223334799999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhh--cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANL--VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
+ .|..|+++ |.+. ..+++...+.+.. ...... ..+++|+|||+|.+|+|+|..|...+.. |+++.+
T Consensus 150 ~---~p~~p~i~---G~~~--~~v~~~~~~~~~~-~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~ 217 (480)
T 3cgb_A 150 V---RPVMPEWE---GRDL--QGVHLLKTIPDAE-RILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKK---VRMIER 217 (480)
T ss_dssp E---EECCCCCB---TTTS--BTEECCSSHHHHH-HHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCE---EEEECC
T ss_pred C---cccCCCCC---CccC--CCEEEeCCHHHHH-HHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEe
Confidence 5 47777777 6542 1244432222111 000111 2689999999999999999999988765 999999
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+. +.+... . .
T Consensus 218 ~~~-~l~~~~-------~----~--------------------------------------------------------- 228 (480)
T 3cgb_A 218 NDH-IGTIYD-------G----D--------------------------------------------------------- 228 (480)
T ss_dssp GGG-TTSSSC-------H----H---------------------------------------------------------
T ss_pred CCc-hhhcCC-------H----H---------------------------------------------------------
Confidence 875 333211 0 0
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEecCc-E--EEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhh
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG-I--VVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL 393 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~-v--~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~ 393 (418)
+.+.+.+.+++.+|+++.+. +..++.++ + ...++.+ +++|.||+|+|++++..+++.++..
T Consensus 229 --------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~-i~~D~vi~a~G~~p~~~~l~~~g~~------ 293 (480)
T 3cgb_A 229 --------MAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIR------ 293 (480)
T ss_dssp --------HHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEE-EECSEEEECSCEEESCGGGTTSCCC------
T ss_pred --------HHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCE-EEcCEEEECcCCCcChHHHHhCCcc------
Confidence 00111234455567777765 66665433 2 2234556 9999999999999985544332222
Q ss_pred cCCCCCCccceeeeeeccCcccc
Q 014821 394 AGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.++.+.++..+.++.|+||.
T Consensus 294 -~~~~G~I~Vd~~~~ts~p~IyA 315 (480)
T 3cgb_A 294 -TNHKGAIEVNAYMQTNVQDVYA 315 (480)
T ss_dssp -BCTTSCBCCCTTSBCSSTTEEE
T ss_pred -cCCCCCEEECCCccCCCCCEEE
Confidence 1345678888777778999985
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-24 Score=215.36 Aligned_cols=277 Identities=14% Similarity=0.154 Sum_probs=167.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc---CCCCCCCCCCCCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF---SDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~ 77 (418)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.. +.|...+......+.. ..+.++.. ....+..
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 78 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVK--GVELDLP 78 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEEC--CEEECHH
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccC--CCccCHH
Confidence 379999999999999999999999999999998889998876 2332211111100000 01111000 0001122
Q ss_pred HHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 78 QVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 78 ~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
.+.. .+...+++.++ .+..++. ..+ + .+.+.|.. ++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~-~~i---~---------------------~~~~~v~~-~g----- 125 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGI--ARHQGTA-RFL---S---------------------ERKVLVEE-TG----- 125 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCE-EES---S---------------------SSEEEETT-TC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEE-EEe---c---------------------CCeEEEee-CC-----
Confidence 2222 22344445566 5555432 222 1 12344432 22
Q ss_pred eEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 147 EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 147 ~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
.++.||+||+|||+. |..|+++ +.+. ..++++.++.... ..+++|+|||+|.+|+|+|..|...+
T Consensus 126 ~~~~~d~lviAtG~~---p~~~~~~---g~~~--~~v~~~~~~~~~~-------~~~~~vvIiGgG~~g~e~A~~l~~~g 190 (455)
T 2yqu_A 126 EELEARYILIATGSA---PLIPPWA---QVDY--ERVVTSTEALSFP-------EVPKRLIVVGGGVIGLELGVVWHRLG 190 (455)
T ss_dssp CEEEEEEEEECCCEE---ECCCTTB---CCCS--SSEECHHHHTCCS-------SCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred EEEEecEEEECCCCC---CCCCCCC---CCCc--CcEechHHhhccc-------cCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 579999999999964 6666666 5432 1355544433321 34689999999999999999999887
Q ss_pred CCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhccc
Q 014821 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKF 306 (418)
Q Consensus 227 ~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (418)
.. |+++.+.+. ++|... ..+
T Consensus 191 ~~---V~lv~~~~~-~l~~~~-----------~~~--------------------------------------------- 210 (455)
T 2yqu_A 191 AE---VIVLEYMDR-ILPTMD-----------LEV--------------------------------------------- 210 (455)
T ss_dssp CE---EEEECSSSS-SCTTSC-----------HHH---------------------------------------------
T ss_pred CE---EEEEecCCc-cccccC-----------HHH---------------------------------------------
Confidence 65 999999875 333221 000
Q ss_pred CCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCCcchh
Q 014821 307 GMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGDVKLK 381 (418)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~~ 381 (418)
.+.+.+.+++.+|+++.+. +..++. ++ +.+++|++ +++|.||+|||++++..+.
T Consensus 211 --------------------~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~~D~vv~A~G~~p~~~~l 269 (455)
T 2yqu_A 211 --------------------SRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEV-LEADRVLVAVGRRPYTEGL 269 (455)
T ss_dssp --------------------HHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCE-EEESEEEECSCEEECCTTC
T ss_pred --------------------HHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeE-EEcCEEEECcCCCcCCCCC
Confidence 0111223344567777775 666653 23 45567888 9999999999999985431
Q ss_pred ccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 382 NIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 382 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
. ++...+. +.++.+.++..+.++.|+||.
T Consensus 270 ~------~~~~g~~~~~~g~i~vd~~~~t~~~~iya 299 (455)
T 2yqu_A 270 S------LENAGLSTDERGRIPVDEHLRTRVPHIYA 299 (455)
T ss_dssp C------GGGGTCCCCTTSCCCCCTTSBCSSTTEEE
T ss_pred C------hhhcCCccCCCCcEeECCCcccCCCCEEE
Confidence 0 1222222 234667777777778899985
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-24 Score=212.57 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=170.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccc----cccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQL----YQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (418)
.+||+|||||++|+++|..|++.|.+|+|||+ ..+||.|.. +.|...+...... ..+..+.+... ......
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYA--DPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCC--CCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccC--CCccCH
Confidence 57999999999999999999999999999999 789998776 3333222111110 01111212110 001111
Q ss_pred hH-----------HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEe-cCCCC
Q 014821 77 NQ-----------VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE-DAKNH 144 (418)
Q Consensus 77 ~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 144 (418)
.. +..++....++.++ .+.. ..+..++. ..+.+. ++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~i~~--------------------------~~v~v~~~~--- 150 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNV--HIYE-SRAVFVDE--------------------------HTLELSVTG--- 150 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEE-SCEEEEET--------------------------TEEEETTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-eEEEEeeC--------------------------CEEEEecCC---
Confidence 22 22333444444555 4444 35555442 235554 33
Q ss_pred ceeEEEeCEEEEeeccCCCCCC-CCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPN-IPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~-~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
..+.+|+||+|||+. |. .|.++ |.+. +.++..+.. ....+++++|||+|.+|+|+|..|.
T Consensus 151 --~~~~~d~lviAtG~~---p~~~p~i~---G~~~----~~~~~~~~~-------~~~~~~~v~ViGgG~~g~e~A~~l~ 211 (484)
T 3o0h_A 151 --ERISAEKILIATGAK---IVSNSAIK---GSDL----CLTSNEIFD-------LEKLPKSIVIVGGGYIGVEFANIFH 211 (484)
T ss_dssp --CEEEEEEEEECCCEE---ECCC--CB---TGGG----SBCTTTGGG-------CSSCCSEEEEECCSHHHHHHHHHHH
T ss_pred --eEEEeCEEEEccCCC---cccCCCCC---Cccc----cccHHHHHh-------HHhcCCcEEEECcCHHHHHHHHHHH
Confidence 589999999999954 66 67666 6542 222222222 2245789999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+.+.+ ++... ..
T Consensus 212 ~~g~~---Vtli~~~~~~-l~~~~-----------~~------------------------------------------- 233 (484)
T 3o0h_A 212 GLGVK---TTLLHRGDLI-LRNFD-----------YD------------------------------------------- 233 (484)
T ss_dssp HTTCE---EEEECSSSSS-STTSC-----------HH-------------------------------------------
T ss_pred HcCCe---EEEEECCCcc-ccccC-----------HH-------------------------------------------
Confidence 88765 9999988753 23221 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+.+.+++.+|+++.+. +..++.+ .|.+++|++ +++|.||+|+|++++.
T Consensus 234 ----------------------~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~aD~Vi~A~G~~p~~ 290 (484)
T 3o0h_A 234 ----------------------LRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQT-ICADRVMLATGRVPNT 290 (484)
T ss_dssp ----------------------HHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCE-EEESEEEECCCEEECC
T ss_pred ----------------------HHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcE-EEcCEEEEeeCCCcCC
Confidence 01112234455578888765 7777654 377889988 9999999999999985
Q ss_pred chhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 379 KLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.++. +....+. +.++.+.++..+.++.||||.
T Consensus 291 ~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~Iya 323 (484)
T 3o0h_A 291 TGLG------LERAGVKVNEFGAVVVDEKMTTNVSHIWA 323 (484)
T ss_dssp TTCC------HHHHTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred CCCC------hhhcCceECCCCCEeECCCCCCCCCCEEE
Confidence 4311 2222222 345678888777889999996
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=212.60 Aligned_cols=272 Identities=15% Similarity=0.214 Sum_probs=166.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCC---CCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSD---YPWPDSVTTD 72 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~---~~~~~~~~~~ 72 (418)
.++||+|||||++|+++|..|++.|.+|+|||+ +.+||.|.. +.|...+......+ .+.. +.++.. ..
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~--~~ 80 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA--SP 80 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC--CC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC--CC
Confidence 468999999999999999999999999999999 789999875 23322211111111 1111 222211 11
Q ss_pred CCChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 73 FPDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 73 ~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
..+...+..+ +....+++++ .+..++.+ .++ . ++|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~-~~~--~------------------------~~v~v~~- 130 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGV--KVVHGWAK-VLD--G------------------------KQVEVDG- 130 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECSCEE-EEE--T------------------------TEEEETT-
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEEEEE-Ecc--C------------------------CEEEEee-
Confidence 2233333333 2344555676 56654433 232 2 3455533
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCC-CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
.++.||+||+|||+. |..|+ ++ . + +.++++.++.... ..+++|+|||+|.+|+|+|.
T Consensus 131 -----~~~~~d~lviATGs~---p~~~~~~~---~-~---~~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~A~ 188 (458)
T 1lvl_A 131 -----QRIQCEHLLLATGSS---SVELPMLP---L-G---GPVISSTEALAPK-------ALPQHLVVVGGGYIGLELGI 188 (458)
T ss_dssp -----EEEECSEEEECCCEE---ECCBTTBC---C-B---TTEECHHHHTCCS-------SCCSEEEEECCSHHHHHHHH
T ss_pred -----EEEEeCEEEEeCCCC---CCCCCCCC---c-c---CcEecHHHHhhhh-------ccCCeEEEECcCHHHHHHHH
Confidence 479999999999964 55554 33 1 1 1355554443322 35789999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (418)
.|...+.. |+++.+++. ++|... ..+
T Consensus 189 ~l~~~g~~---Vtlv~~~~~-~l~~~~-----------~~~--------------------------------------- 214 (458)
T 1lvl_A 189 AYRKLGAQ---VSVVEARER-ILPTYD-----------SEL--------------------------------------- 214 (458)
T ss_dssp HHHHHTCE---EEEECSSSS-SSTTSC-----------HHH---------------------------------------
T ss_pred HHHHCCCe---EEEEEcCCc-cccccC-----------HHH---------------------------------------
Confidence 99998765 999999875 333221 000
Q ss_pred hhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEc--CC--ceeeeccEEEEccCCC
Q 014821 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVD--GQ--TTPLKTDLVILATGFK 375 (418)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~--~g--~~~~~~D~Vi~atG~~ 375 (418)
.+.+.+.+++.+|+++.+. +..++.+.+.+. +| ++ +++|.||+|||++
T Consensus 215 --------------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~-i~~D~vv~a~G~~ 267 (458)
T 1lvl_A 215 --------------------------TAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLR-LEADRVLVAVGRR 267 (458)
T ss_dssp --------------------------HHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCE-ECCSCEEECCCEE
T ss_pred --------------------------HHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEE-EECCEEEECcCCC
Confidence 0111223445567777775 677765335444 56 46 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+..+. .++...+. +.+ .+.++..+.++.|+||.
T Consensus 268 p~~~~l------~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya 302 (458)
T 1lvl_A 268 PRTKGF------NLECLDLKMNGA-AIAIDERCQTSMHNVWA 302 (458)
T ss_dssp ECCSSS------SGGGSCCCEETT-EECCCTTCBCSSTTEEE
T ss_pred cCCCCC------CcHhcCCcccCC-EEeECCCCcCCCCCEEE
Confidence 995431 01111111 122 56666666778899985
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-24 Score=214.01 Aligned_cols=280 Identities=15% Similarity=0.157 Sum_probs=170.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEee--------CCCCCccccc--cCCcceecCCcccc----ccCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA--------RSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDS 68 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~--------~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~ 68 (418)
.+||+|||||++|+++|..|++.|.+|+|||+ ...+||.|.. +.|...+......+ ....+.+...
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~ 85 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVA 85 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccC
Confidence 58999999999999999999999999999997 4578998876 34443332211111 1112222211
Q ss_pred CCCCCCChhHHHHHHHHHHH-----------hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 69 VTTDFPDHNQVLDYIQSYAS-----------HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.........+..+.+.+.+ ..++ .+ +...+..++. ..+.|.
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~-i~g~~~~~~~------------------------~~v~v~ 137 (488)
T 3dgz_A 86 -QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKV--KY-FNIKASFVDE------------------------HTVRGV 137 (488)
T ss_dssp -SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECCEEEESSS------------------------SEEEEE
T ss_pred -CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EEEEEEEccC------------------------CeEEEE
Confidence 1123344455554443332 2233 22 2233333221 223443
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCC-CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
.. ++...++.||+||||||+ .|..|+ ++ |.+.+ .+++..+... ...+++++|||+|.+|+
T Consensus 138 ~~---~g~~~~~~~d~lViATGs---~p~~p~~i~---G~~~~---~~~~~~~~~~-------~~~~~~vvViGgG~ig~ 198 (488)
T 3dgz_A 138 DK---GGKATLLSAEHIVIATGG---RPRYPTQVK---GALEY---GITSDDIFWL-------KESPGKTLVVGASYVAL 198 (488)
T ss_dssp CT---TSCEEEEEEEEEEECCCE---EECCCSSCB---THHHH---CBCHHHHTTC-------SSCCCSEEEECCSHHHH
T ss_pred eC---CCceEEEECCEEEEcCCC---CCCCCCCCC---Ccccc---cCcHHHHHhh-------hhcCCeEEEECCCHHHH
Confidence 32 234468999999999995 577776 77 65432 2333333221 23467899999999999
Q ss_pred HHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHH
Q 014821 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (418)
Q Consensus 217 e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (418)
|+|..|...+.. |+++.|.. +++... . .
T Consensus 199 E~A~~l~~~g~~---Vtlv~~~~--~l~~~d-------~----~------------------------------------ 226 (488)
T 3dgz_A 199 ECAGFLTGIGLD---TTVMMRSI--PLRGFD-------Q----Q------------------------------------ 226 (488)
T ss_dssp HHHHHHHHTTCC---EEEEESSC--SSTTSC-------H----H------------------------------------
T ss_pred HHHHHHHHcCCc---eEEEEcCc--ccccCC-------H----H------------------------------------
Confidence 999999998765 99999864 333222 0 0
Q ss_pred HHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec---Cc--EEEcC---Cce-eeecc
Q 014821 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE---DG--IVVDG---QTT-PLKTD 366 (418)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~---~~--v~~~~---g~~-~~~~D 366 (418)
+.+.+.+.+++.+|+++.+. +..+.. +. +.+.+ |+. .+++|
T Consensus 227 -----------------------------~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D 277 (488)
T 3dgz_A 227 -----------------------------MSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFD 277 (488)
T ss_dssp -----------------------------HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEES
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECC
Confidence 01112234556678887774 566643 22 45544 552 27899
Q ss_pred EEEEccCCCCCcchhccccchhhhhhhcC-C-CCCCccceeeeeeccCcccc
Q 014821 367 LVILATGFKGDVKLKNIFLSQTFQDYLAG-S-PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 367 ~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 416 (418)
.||+|||++|+..++. +....+. + .++.+.++..+.++.||||.
T Consensus 278 ~vi~a~G~~p~~~~l~------l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA 323 (488)
T 3dgz_A 278 TVLWAIGRVPETRTLN------LEKAGISTNPKNQKIIVDAQEATSVPHIYA 323 (488)
T ss_dssp EEEECSCEEESCGGGT------GGGGTCCBCSSSCCBCCCTTSBCSSTTEEE
T ss_pred EEEEcccCCcccCcCC------ccccCcEecCCCCeEeECCCCccCCCCEEE
Confidence 9999999999954321 1222222 3 46778888877889999995
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-24 Score=214.98 Aligned_cols=280 Identities=17% Similarity=0.193 Sum_probs=168.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--------CCCccccc--cCCcceecCCcccc----ccCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDS 68 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--------~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~ 68 (418)
.+||+|||||++|+++|..|++.|.+|+|||+++ .+||.|.. +.|...+..+...+ .+..+.+...
T Consensus 32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~ 111 (519)
T 3qfa_A 32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE 111 (519)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccC
Confidence 5899999999999999999999999999999954 68888776 34433332221111 1112222211
Q ss_pred CCCCCCChhHHHHHHHHHHH-----------hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 69 VTTDFPDHNQVLDYIQSYAS-----------HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+...+..+.+.+.+ ..++ .+. ...+..++... +.|.
T Consensus 112 -~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV--~~i-~g~a~~~d~~~------------------------v~v~ 163 (519)
T 3qfa_A 112 -ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV--VYE-NAYGQFIGPHR------------------------IKAT 163 (519)
T ss_dssp -SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEE-CSEEEEEETTE------------------------EEEE
T ss_pred -CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEeeCCE------------------------EEEE
Confidence 1122344455554443322 2343 232 34454444322 4443
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
..+ +...++.||+||||||+ .|..|+++ |...+ ++++..+..+ ...+++++|||+|.+|+|
T Consensus 164 ~~~---g~~~~i~~d~lViATGs---~p~~p~i~---G~~~~---~~t~~~~~~l-------~~~~~~vvVIGgG~ig~E 224 (519)
T 3qfa_A 164 NNK---GKEKIYSAERFLIATGE---RPRYLGIP---GDKEY---CISSDDLFSL-------PYCPGKTLVVGASYVALE 224 (519)
T ss_dssp CTT---CCCCEEEEEEEEECCCE---EECCCCCT---THHHH---CBCHHHHTTC-------SSCCCSEEEECCSHHHHH
T ss_pred cCC---CCEEEEECCEEEEECCC---CcCCCCCC---CccCc---eEcHHHHhhh-------hhcCCeEEEECCcHHHHH
Confidence 322 33458999999999995 57777777 65432 3333333221 234678999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..|...+.. |+++.|+. +++... . .
T Consensus 225 ~A~~l~~~G~~---Vtlv~~~~--~l~~~d-------~----~------------------------------------- 251 (519)
T 3qfa_A 225 CAGFLAGIGLD---VTVMVRSI--LLRGFD-------Q----D------------------------------------- 251 (519)
T ss_dssp HHHHHHHTTCC---EEEEESSC--SSTTSC-------H----H-------------------------------------
T ss_pred HHHHHHHcCCe---EEEEeccc--ccccCC-------H----H-------------------------------------
Confidence 99999998765 99999852 334322 0 0
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeE---ec---CcE--E--EcCCc--eeee
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSF---CE---DGI--V--VDGQT--TPLK 364 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~---~~---~~v--~--~~~g~--~~~~ 364 (418)
+.+.+.+.+++.+|+++.+. +..+ .. +.+ . ..+|. ..++
T Consensus 252 ----------------------------~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~ 303 (519)
T 3qfa_A 252 ----------------------------MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGE 303 (519)
T ss_dssp ----------------------------HHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEE
T ss_pred ----------------------------HHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEE
Confidence 00112234455667777763 3333 32 222 2 23553 2278
Q ss_pred ccEEEEccCCCCCcchhccccchhhhhhhcCC--CCCCccceeeeeeccCcccc
Q 014821 365 TDLVILATGFKGDVKLKNIFLSQTFQDYLAGS--PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 365 ~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|.||+|+|++|+...+. +....+.. .++.+.++..+.++.||||.
T Consensus 304 ~D~vi~a~G~~p~~~~l~------l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA 351 (519)
T 3qfa_A 304 YNTVMLAIGRDACTRKIG------LETVGVKINEKTGKIPVTDEEQTNVPYIYA 351 (519)
T ss_dssp ESEEEECSCEEESCSSSC------STTTTCCCCTTTCCBCCCTTSBCSSTTEEE
T ss_pred CCEEEEecCCcccCCCCC------hhhcCcEEcCCCCeEeeCCCCccCCCCEEE
Confidence 999999999999854321 22222222 35778888888889999995
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=211.67 Aligned_cols=281 Identities=14% Similarity=0.096 Sum_probs=168.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC------CCccccc--cCCcceecCCccccc-----cCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD------IGGAWIK--TVETTMLQTPKQLYQ-----FSDYPWPDS 68 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~------~gg~~~~--~~~~~~l~~~~~~~~-----~~~~~~~~~ 68 (418)
+++||+|||||++|+++|..|++.|++|+|||++.. +||.|.. +.|...+......+. +..+.+..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~- 80 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIST- 80 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEEC-
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCccc-
Confidence 578999999999999999999999999999999863 5665544 222222111111100 11111111
Q ss_pred CCCCCCChhHHHHHH-----------HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 69 VTTDFPDHNQVLDYI-----------QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+...+..+. ....++.++ .+.. ..+..++ ...+.|.
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~------------------------~~~~~v~ 132 (476)
T 3lad_A 81 -GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGV--TLFE-GHGKLLA------------------------GKKVEVT 132 (476)
T ss_dssp -SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEE-SEEEECS------------------------TTCEEEE
T ss_pred -CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-eEEEEec------------------------CCEEEEE
Confidence 01111222222222 233334455 3444 2333322 1335554
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
..+ +...++.||+||+|||+. |..|+.. +.+ ...++++..+... ...+++|+|||+|.+|+|
T Consensus 133 ~~~---g~~~~~~~d~lvlAtG~~---p~~~~~~---~~~--~~~v~~~~~~~~~-------~~~~~~v~ViGgG~~g~e 194 (476)
T 3lad_A 133 AAD---GSSQVLDTENVILASGSK---PVEIPPA---PVD--QDVIVDSTGALDF-------QNVPGKLGVIGAGVIGLE 194 (476)
T ss_dssp CTT---SCEEEECCSCEEECCCEE---ECCCTTS---CCC--SSSEEEHHHHTSC-------SSCCSEEEEECCSHHHHH
T ss_pred cCC---CceEEEEcCEEEEcCCCC---CCCCCCC---CCC--cccEEechhhhcc-------ccCCCeEEEECCCHHHHH
Confidence 332 334689999999999964 5555433 322 1235555444332 245789999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..|...+.. |+++.|.+.+ ++... ..
T Consensus 195 ~A~~l~~~g~~---Vtlv~~~~~~-l~~~~-----------~~------------------------------------- 222 (476)
T 3lad_A 195 LGSVWARLGAE---VTVLEAMDKF-LPAVD-----------EQ------------------------------------- 222 (476)
T ss_dssp HHHHHHHTTCE---EEEEESSSSS-STTSC-----------HH-------------------------------------
T ss_pred HHHHHHHcCCc---EEEEecCCCc-CcccC-----------HH-------------------------------------
Confidence 99999988765 9999998753 33222 00
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcCC---ceeeeccEEE
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQ---TTPLKTDLVI 369 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~g---~~~~~~D~Vi 369 (418)
+.+.+.+.+++.+|+++.+. +..++.+ + +.+.++ ++ +++|.||
T Consensus 223 ----------------------------~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~-~~~D~vi 273 (476)
T 3lad_A 223 ----------------------------VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKS-QAFDKLI 273 (476)
T ss_dssp ----------------------------HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEE-EEESEEE
T ss_pred ----------------------------HHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEE-EECCEEE
Confidence 11112345566788888886 7777632 2 566654 45 9999999
Q ss_pred EccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 370 LATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 370 ~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|||++|+.... .+....+. +.++.+.++..+.++.||||.
T Consensus 274 ~a~G~~p~~~~l------~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya 315 (476)
T 3lad_A 274 VAVGRRPVTTDL------LAADSGVTLDERGFIYVDDYCATSVPGVYA 315 (476)
T ss_dssp ECSCEEECCTTC------CSSCCSCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred EeeCCcccCCCC------CccccCccccCCCCEeeCCCcccCCCCEEE
Confidence 999999985421 01111121 335678888777889999996
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-24 Score=211.22 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=169.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccc----cccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQL----YQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..|++.|.+|+|||+ ..+||.|.. +.|...+..+... ..+..+.+... ....+.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 81 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVG--ESRFDW 81 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEEC--CCEECH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccC--CCCcCH
Confidence 48999999999999999999999999999999 789998865 3232221111100 01111111100 001122
Q ss_pred hHHH-----------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEe-cCCCC
Q 014821 77 NQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE-DAKNH 144 (418)
Q Consensus 77 ~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 144 (418)
..+. .++....++.++ .+..+ ++..++ . ..+.+. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~--~------------------------~~v~~~~~~--- 129 (463)
T 4dna_A 82 AKLVAAKEQEIARLEGLYRKGLANAGA--EILDT-RAELAG--P------------------------NTVKLLASG--- 129 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEES-CEEESS--S------------------------SEEEETTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEee--C------------------------CEEEEecCC---
Confidence 2222 233333444455 34432 333322 1 345552 22
Q ss_pred ceeEEEeCEEEEeeccCCCCCC-CCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPN-IPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~-~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
..+.+|+||+|||+ .|. .|+++ |.+. ++++..+.. ....+++++|||+|.+|+|+|..+.
T Consensus 130 --~~~~~d~lviAtG~---~p~~~p~i~---G~~~----~~~~~~~~~-------~~~~~~~v~ViGgG~~g~e~A~~l~ 190 (463)
T 4dna_A 130 --KTVTAERIVIAVGG---HPSPHDALP---GHEL----CITSNEAFD-------LPALPESILIAGGGYIAVEFANIFH 190 (463)
T ss_dssp --EEEEEEEEEECCCE---EECCCTTST---TGGG----CBCHHHHTT-------CSSCCSEEEEECCSHHHHHHHHHHH
T ss_pred --eEEEeCEEEEecCC---CcccCCCCC---Cccc----cccHHHHhh-------hhcCCCeEEEECCCHHHHHHHHHHH
Confidence 58999999999995 466 77777 6542 233222222 1234789999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+.+..+ +... ..
T Consensus 191 ~~g~~---Vt~v~~~~~~l-~~~~-----------~~------------------------------------------- 212 (463)
T 4dna_A 191 GLGVK---TTLIYRGKEIL-SRFD-----------QD------------------------------------------- 212 (463)
T ss_dssp HTTCE---EEEECSSSSSS-TTSC-----------HH-------------------------------------------
T ss_pred HcCCe---EEEEEcCCccc-cccC-----------HH-------------------------------------------
Confidence 88765 99999987533 3222 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEE-EcCCceeeeccEEEEccCCCC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIV-VDGQTTPLKTDLVILATGFKG 376 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~-~~~g~~~~~~D~Vi~atG~~~ 376 (418)
+.+.+.+.+++.+|+++.+. +..+..+ .|. +++|+ +++|.||+|+|++|
T Consensus 213 ----------------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~--i~aD~Vv~a~G~~p 268 (463)
T 4dna_A 213 ----------------------MRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE--IVADQVMLALGRMP 268 (463)
T ss_dssp ----------------------HHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE--EEESEEEECSCEEE
T ss_pred ----------------------HHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe--EEeCEEEEeeCccc
Confidence 01112345566778888875 7777643 356 66775 99999999999999
Q ss_pred CcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 377 DVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+..++. +....+. +.++.+.++..+.++.||||.
T Consensus 269 ~~~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~iya 303 (463)
T 4dna_A 269 NTNGLG------LEAAGVRTNELGAIIVDAFSRTSTPGIYA 303 (463)
T ss_dssp SCTTSS------TGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred CCCCCC------ccccCceECCCCCEeECcCCCCCCCCEEE
Confidence 854311 1222222 346778888777889999996
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-23 Score=211.99 Aligned_cols=188 Identities=21% Similarity=0.274 Sum_probs=114.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-C-------CCCccccc--cCCcceecCCccc----cccCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-S-------DIGGAWIK--TVETTMLQTPKQL----YQFSDYPWPD 67 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~-------~~gg~~~~--~~~~~~l~~~~~~----~~~~~~~~~~ 67 (418)
..+||+|||||++|+++|..|++.|.+++|||+. + .+||.|.. +.|...+...... ..+..+.+..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~ 185 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSL 185 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccc
Confidence 3589999999999999999999999999999973 2 36776654 2333222111100 0011111110
Q ss_pred CCCCCCCChhHHHHHHHHHHHhc-----------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 68 SVTTDFPDHNQVLDYIQSYASHF-----------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
.......+..++.++++.+++++ ++ .+. ...+..++. +.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~~-~~~~~~~~~--------------------------~~v 236 (598)
T 2x8g_A 186 DRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV--TYL-NAKGRLISP--------------------------HEV 236 (598)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEE-CSEEEEEET--------------------------TEE
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EEE-EEEEEEcCC--------------------------CEE
Confidence 00011234456666666554432 22 121 223333321 335
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
.+... +|...++.||+||+|||+ .|..|+++ |.+.+ .+++..+.. ....+++|+|||+|.+|+
T Consensus 237 ~v~~~-~g~~~~~~~d~lviAtGs---~p~~p~i~---G~~~~---~~~~~~~~~-------~~~~~~~vvViGgG~~g~ 299 (598)
T 2x8g_A 237 QITDK-NQKVSTITGNKIILATGE---RPKYPEIP---GAVEY---GITSDDLFS-------LPYFPGKTLVIGASYVAL 299 (598)
T ss_dssp EEECT-TCCEEEEEEEEEEECCCE---EECCCSST---THHHH---CEEHHHHTT-------CSSCCCSEEEECCSHHHH
T ss_pred EEEeC-CCCeEEEEeCEEEEeCCC---CCCCCCCC---Ccccc---eEcHHHHhh-------CccCCCEEEEECCCHHHH
Confidence 44432 233457999999999995 57788777 75432 333332222 123467899999999999
Q ss_pred HHHHHHhhhcCCCCCeEEEEec
Q 014821 217 DIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 217 e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+|..|...+.. |+++.|+
T Consensus 300 E~A~~l~~~g~~---Vtlv~~~ 318 (598)
T 2x8g_A 300 ECAGFLASLGGD---VTVMVRS 318 (598)
T ss_dssp HHHHHHHHTTCC---EEEEESS
T ss_pred HHHHHHHHcCCE---EEEEECC
Confidence 999999998765 9999987
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-23 Score=210.12 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=165.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++++|||||||++|+.+|..|++.+++|+|||+++.. .| .|. +++. .....+...+..
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~------~~------~Pl-L~~v---------a~G~l~~~~i~~ 98 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF------LF------TPL-LPSA---------PVGTVDEKSIIE 98 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE------EC------GGG-GGGT---------TTTSSCGGGGEE
T ss_pred CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc------cc------ccc-hhHH---------hhccccHHHhhh
Confidence 3578999999999999999999999999999997521 11 010 0000 001111112211
Q ss_pred HHHHHHHh--cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC---------------CCC
Q 014821 82 YIQSYASH--FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA---------------KNH 144 (418)
Q Consensus 82 ~l~~~~~~--~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~ 144 (418)
-++..... .+. .+...+|++|+.+. .+|++.+. ..+
T Consensus 99 p~~~~~~~~~~~v---~~~~~~v~~ID~~~------------------------k~V~l~~~~~~~~~~~~~~~~~~~~~ 151 (502)
T 4g6h_A 99 PIVNFALKKKGNV---TYYEAEATSINPDR------------------------NTVTIKSLSAVSQLYQPENHLGLHQA 151 (502)
T ss_dssp EHHHHHTTCSSCE---EEEEEEEEEEEGGG------------------------TEEEEEEEEEEEECSSSCCCCCCCTT
T ss_pred hHHHHHHhhcCCe---EEEEEEEEEEEhhh------------------------CEEEEeecccceeecccccccccccC
Confidence 12222222 122 23457899998766 23433221 113
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhh-------------------hhhhcCCCE
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA-------------------AANLVKGKR 205 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 205 (418)
...++.||+||||||+ .|+.+++| |.+++ .+. +....+.. .+......+
T Consensus 152 ~~~~i~YD~LViAtGs---~~~~~~ip---G~~e~---a~~---l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~ 219 (502)
T 4g6h_A 152 EPAEIKYDYLISAVGA---EPNTFGIP---GVTDY---GHF---LKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLS 219 (502)
T ss_dssp CCEEEECSEEEECCCC---EECCTTCT---THHHH---CEE---CSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTE
T ss_pred CceEEeCCEEEEcCCc---ccccCCcc---Ccccc---cCC---CCCHHHHHHHHHHHHHHHHHHhcccccchhhccccc
Confidence 3468999999999995 46777776 75432 111 11111100 011122458
Q ss_pred EEEEcCCCCHHHHHHHHhhhcCC-----------CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhH
Q 014821 206 VTVVGLQKSALDIAMECTTANGL-----------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFL 274 (418)
Q Consensus 206 v~VvG~G~sa~e~a~~l~~~~~~-----------~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (418)
++|||+|.+|+|+|.+|...+.. ..+|+++.+.++ ++|.+. ..+
T Consensus 220 vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~-il~~~~-----------~~~------------- 274 (502)
T 4g6h_A 220 IVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI-VLNMFE-----------KKL------------- 274 (502)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSS-SSTTSC-----------HHH-------------
T ss_pred eEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccc-cccCCC-----------HHH-------------
Confidence 99999999999999999764311 135899998875 445433 111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc
Q 014821 275 LSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG 353 (418)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~ 353 (418)
++...+.+++.+|+++.+. +..+++++
T Consensus 275 ----------------------------------------------------~~~~~~~L~~~GV~v~~~~~v~~v~~~~ 302 (502)
T 4g6h_A 275 ----------------------------------------------------SSYAQSHLENTSIKVHLRTAVAKVEEKQ 302 (502)
T ss_dssp ----------------------------------------------------HHHHHHHHHHTTCEEETTEEEEEECSSE
T ss_pred ----------------------------------------------------HHHHHHHHHhcceeeecCceEEEEeCCc
Confidence 1112345667789999987 88898887
Q ss_pred EEE----cCCc---eeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 354 IVV----DGQT---TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 354 v~~----~~g~---~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
+.+ +||+ +.+++|.||||+|.++++...+. .. ......+..+++.++..+ +++.||||.
T Consensus 303 ~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l-~~---~~~~~~~~~g~I~Vd~~lq~~~~~~IfA 369 (502)
T 4g6h_A 303 LLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDL-FK---KIPEQNSSKRGLAVNDFLQVKGSNNIFA 369 (502)
T ss_dssp EEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHH-HH---HSGGGTTCCSSEEBCTTSBBTTCSSEEE
T ss_pred eEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhH-HH---hccccccCCCceeECCccccCCCCCEEE
Confidence 654 3553 23899999999999998422221 10 001122456789999888 889999995
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-23 Score=204.24 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=116.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|++.|++|+|||+.+.+||.|.+..|.. ....++.++
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~------------------------~~~~~~~~~ 177 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGF------------------------KLEKSVVER 177 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTT------------------------TSCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCc------------------------cCCHHHHHH
Confidence 47999999999999999999999999999999999999876533321 111456677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++++ ++++++.|. . .+++.+. .+.||+||+|||+.
T Consensus 178 ~~~~l~~~gv--~~~~~~~v~-----~-------------------------~v~~~~~------~~~~d~vvlAtG~~- 218 (456)
T 2vdc_G 178 RVKLLADAGV--IYHPNFEVG-----R-------------------------DASLPEL------RRKHVAVLVATGVY- 218 (456)
T ss_dssp HHHHHHHTTC--EEETTCCBT-----T-------------------------TBCHHHH------HSSCSEEEECCCCC-
T ss_pred HHHHHHHCCc--EEEeCCEec-----c-------------------------EEEhhHh------HhhCCEEEEecCCC-
Confidence 7777788888 677765531 1 1222222 25699999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhh----h--h-----hhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCC
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE----A--A-----ANLVKGKRVTVVGLQKSALDIAMECTTANGLENP 231 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~----~--~-----~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~ 231 (418)
.|..+.++ |.+. . .+++..++...... . . .....+++|+|||+|.+|+|+|..+...+. ++
T Consensus 219 -~~~~~~ip---G~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga--~~ 290 (456)
T 2vdc_G 219 -KARDIKAP---GSGL-G-NIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGA--TS 290 (456)
T ss_dssp -EECCTTCS---CCTT-T-TEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTC--SE
T ss_pred -CCCCCCCC---CCcC-C-CcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCC--CE
Confidence 36666676 6541 1 24433222110000 0 0 012468999999999999999999888765 35
Q ss_pred eEEEEecCccccc
Q 014821 232 CTVLYRTEHWNIP 244 (418)
Q Consensus 232 V~~~~r~~~~~~~ 244 (418)
|++++|++...+|
T Consensus 291 Vtiv~r~~~~~~p 303 (456)
T 2vdc_G 291 VKCLYRRDRKNMP 303 (456)
T ss_dssp EEEECSSCSTTCS
T ss_pred EEEEEeCCccCCC
Confidence 9999998864333
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-23 Score=205.34 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=171.8
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCCh
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (418)
|. ++||||||||++|+++|..|++ .+.+|+|||+++... +. |... .+ .......
T Consensus 1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~------~~------~~~~-~~---------~~g~~~~ 58 (437)
T 3sx6_A 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ------FV------PSNP-WV---------GVGWKER 58 (437)
T ss_dssp CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE------CG------GGHH-HH---------HHTSSCH
T ss_pred CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc------cc------CCcc-cc---------ccCccCH
Confidence 54 5799999999999999999999 799999999976321 00 0000 00 0111233
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.++...+...+++.++ .+. .++|+.++... ..|.+.++ .++.||+||+
T Consensus 59 ~~~~~~l~~~~~~~gv--~~~-~~~v~~id~~~------------------------~~V~~~~g-----~~i~~d~lvi 106 (437)
T 3sx6_A 59 DDIAFPIRHYVERKGI--HFI-AQSAEQIDAEA------------------------QNITLADG-----NTVHYDYLMI 106 (437)
T ss_dssp HHHEEECHHHHHTTTC--EEE-CSCEEEEETTT------------------------TEEEETTS-----CEEECSEEEE
T ss_pred HHHHHHHHHHHHHCCC--EEE-EeEEEEEEcCC------------------------CEEEECCC-----CEEECCEEEE
Confidence 4555556677777787 555 57899998655 35777665 5799999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhh--hhhhcCCCEEEEEcCCCCH------HHHHHHHh----h
Q 014821 157 CVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA--AANLVKGKRVTVVGLQKSA------LDIAMECT----T 224 (418)
Q Consensus 157 AtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~VvG~G~sa------~e~a~~l~----~ 224 (418)
|||+ .|..|.++ |.+...+...+...+....... .....++++++|||+|.+| +|+|..+. .
T Consensus 107 AtG~---~~~~~~ip---G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~ 180 (437)
T 3sx6_A 107 ATGP---KLAFENVP---GSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK 180 (437)
T ss_dssp CCCC---EECGGGST---TCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCC---CcCcccCC---CCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHH
Confidence 9995 46677777 7664433333322222110000 0011224567899997654 88886554 3
Q ss_pred hcCC-CCC-eEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 225 ANGL-ENP-CTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 225 ~~~~-~~~-V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
.+.. ..+ |+++++.+. +.+... .+.+
T Consensus 181 ~g~~~~~~~Vtlv~~~~~-~~~~~l-~~~~-------------------------------------------------- 208 (437)
T 3sx6_A 181 RGMRDKIPSFTFITSEPY-IGHLGI-QGVG-------------------------------------------------- 208 (437)
T ss_dssp TTCGGGCSCEEEEESSSS-TTCTTT-TCCT--------------------------------------------------
T ss_pred cCCcccCcEEEEEcCCcc-cccccc-Ccch--------------------------------------------------
Confidence 3321 013 999998764 211100 0000
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcC---------CceeeeccEEEEcc
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDG---------QTTPLKTDLVILAT 372 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~---------g~~~~~~D~Vi~at 372 (418)
.....+.+.+++.+|+++.+. +.+++++++.+++ +++ +++|.|++|+
T Consensus 209 ----------------------~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~-i~~D~vv~~~ 265 (437)
T 3sx6_A 209 ----------------------DSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMV-LPVKFGMMIP 265 (437)
T ss_dssp ----------------------THHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEE-EECSEEEEEC
T ss_pred ----------------------HHHHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceE-EEEeEEEEcC
Confidence 011122345667789999886 8889888877764 556 9999999999
Q ss_pred CCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 373 GFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 373 G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|+.++..+.+. ..+.+.++.+.++..+ .++.||||.
T Consensus 266 g~~~~~~~~~~--------~gl~~~~G~i~Vd~~l~t~~~~~Ifa 302 (437)
T 3sx6_A 266 AFKGVPAVAGV--------EGLCNPGGFVLVDEHQRSKKYANIFA 302 (437)
T ss_dssp CEECCHHHHTS--------TTTBCTTSCBCBCTTSBBSSCTTEEE
T ss_pred CCcCchhhhcc--------ccccCCCCcEEeChhccCCCCCCEEE
Confidence 99988433321 2223667889999888 669999995
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=200.69 Aligned_cols=171 Identities=25% Similarity=0.279 Sum_probs=115.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHh-C------CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLL-K------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~-~------~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (418)
|..+||+|||||++|+.+|..|++ . +.+|+|||+.+.+||.|++.. .+.+
T Consensus 1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv-----------------------~p~~ 57 (456)
T 1lqt_A 1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV-----------------------APDH 57 (456)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTS-----------------------CTTC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcccccc-----------------------CCCC
Confidence 788999999999999999999999 7 899999999988888876421 1122
Q ss_pred CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCE
Q 014821 74 PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDF 153 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~ 153 (418)
+...++..++...++++++ .++.+..+ . . .|++.++ .+.||+
T Consensus 58 ~~~~~~~~~~~~~~~~~~v--~~~~~v~v------~----------------------~--~v~~~~~------~~~~d~ 99 (456)
T 1lqt_A 58 PKIKSISKQFEKTAEDPRF--RFFGNVVV------G----------------------E--HVQPGEL------SERYDA 99 (456)
T ss_dssp TGGGGGHHHHHHHHTSTTE--EEEESCCB------T----------------------T--TBCHHHH------HHHSSE
T ss_pred CCHHHHHHHHHHHHhcCCC--EEEeeEEE------C----------------------C--EEEECCC------eEeCCE
Confidence 3345677788887777776 55544321 1 0 1333332 478999
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCC----Cchhh-hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc--
Q 014821 154 VILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYS----DMDYE-AAANLVKGKRVTVVGLQKSALDIAMECTTAN-- 226 (418)
Q Consensus 154 vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~-- 226 (418)
||+|||+. .|..|+++ |.+ +.+ ++++..+. ...+. .......+++|+|||+|.+|+|+|..|...+
T Consensus 100 lViAtG~~--~~~~~~ip---G~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~ 172 (456)
T 1lqt_A 100 VIYAVGAQ--SDRMLNIP---GED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDV 172 (456)
T ss_dssp EEECCCCC--EECCCCCT---TTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHH
T ss_pred EEEeeCCC--CCCCCCCC---CCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhh
Confidence 99999964 25666677 654 333 55544331 00000 0011236899999999999999999998741
Q ss_pred -----------------CCCCCeEEEEecCc
Q 014821 227 -----------------GLENPCTVLYRTEH 240 (418)
Q Consensus 227 -----------------~~~~~V~~~~r~~~ 240 (418)
+. ++|+++.|++.
T Consensus 173 l~~tdi~~~~~~~l~~~g~-~~V~lv~r~~~ 202 (456)
T 1lqt_A 173 LARTDIADHALESLRPRGI-QEVVIVGRRGP 202 (456)
T ss_dssp HTTSCCCHHHHHHHTTCCC-CEEEEECSSCG
T ss_pred hcCCCccHHHHHHHHHCCC-cEEEEEecCCh
Confidence 11 36999999885
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-22 Score=203.93 Aligned_cols=280 Identities=17% Similarity=0.189 Sum_probs=164.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--------CCCccccc--cCCcceecCCcccccc-----CCCCCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF-----SDYPWPDS 68 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--------~~gg~~~~--~~~~~~l~~~~~~~~~-----~~~~~~~~ 68 (418)
|||+|||||++|+.+|..+++.|.+|+|||+.. .+||++.+ +.|+..+...+..++. ..+.+..
T Consensus 43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~- 121 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF- 121 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc-
Confidence 799999999999999999999999999999643 47887665 4454333222211110 0011100
Q ss_pred CCCCCCChhHHHHHHHHHH-----------HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 69 VTTDFPDHNQVLDYIQSYA-----------SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+...+..+.+... +..++ .+ +.....-+..+. ..|.
T Consensus 122 -~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V--~~-i~G~a~f~~~~~------------------------v~V~ 173 (542)
T 4b1b_A 122 -DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKV--KY-INGLAKLKDKNT------------------------VSYY 173 (542)
T ss_dssp -EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECEEEEEEETTE------------------------EEEE
T ss_pred -CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EeeeEEEcCCCc------------------------ceEe
Confidence 000112233333333322 22343 22 223333333222 3333
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
... ..+..+++.+|++|||||+ .|.+|+.. +... ..++.+.+...+ ...+++++|||+|++|+|
T Consensus 174 ~~~-~~~~~~~i~a~~iiIATGs---~P~~P~~~---~~~~--~~~~ts~~~l~l-------~~lP~~lvIIGgG~IGlE 237 (542)
T 4b1b_A 174 LKG-DLSKEETVTGKYILIATGC---RPHIPDDV---EGAK--ELSITSDDIFSL-------KKDPGKTLVVGASYVALE 237 (542)
T ss_dssp EC---CCCEEEEEEEEEEECCCE---EECCCSSS---BTHH--HHCBCHHHHTTC-------SSCCCSEEEECCSHHHHH
T ss_pred ecc-cCCceEEEeeeeEEeccCC---CCCCCCcc---cCCC--ccccCchhhhcc-------ccCCceEEEECCCHHHHH
Confidence 322 1244578999999999994 57777543 2211 123333333332 245789999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..+...|.. ||++.|+. ++|... . .
T Consensus 238 ~A~~~~~lG~~---VTii~~~~--~L~~~D-------~----e------------------------------------- 264 (542)
T 4b1b_A 238 CSGFLNSLGYD---VTVAVRSI--VLRGFD-------Q----Q------------------------------------- 264 (542)
T ss_dssp HHHHHHHHTCC---EEEEESSC--SSTTSC-------H----H-------------------------------------
T ss_pred HHHHHHhcCCe---EEEecccc--cccccc-------h----h-------------------------------------
Confidence 99999999876 99998754 445433 0 0
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEcc
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILAT 372 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~at 372 (418)
+...+.+.+++.+++++.+. +..++. +. |.+.++++ +.+|.|++|+
T Consensus 265 ----------------------------i~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~-~~~D~vLvAv 315 (542)
T 4b1b_A 265 ----------------------------CAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTS-ELYDTVLYAI 315 (542)
T ss_dssp ----------------------------HHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCE-EEESEEEECS
T ss_pred ----------------------------HHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCe-EEEEEEEEcc
Confidence 01112234556677887776 555543 22 56778888 8999999999
Q ss_pred CCCCCcchhccccchhhhhhhcC-CCCCC-ccceeeeeeccCcccc
Q 014821 373 GFKGDVKLKNIFLSQTFQDYLAG-SPTEK-LPLYRSAHIYIDTLTY 416 (418)
Q Consensus 373 G~~~~~~~~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 416 (418)
|.+|+.+.+. +....+. +..+. +.++..+.++.|+||.
T Consensus 316 GR~Pnt~~L~------le~~gv~~~~~~~~i~vd~~~~Ts~p~IyA 355 (542)
T 4b1b_A 316 GRKGDIDGLN------LESLNMNVNKSNNKIIADHLSCTNIPSIFA 355 (542)
T ss_dssp CEEESCGGGC------GGGTTCCEETTTTEECCCTTSBCSSTTEEE
T ss_pred cccCCccccC------cccceeeecccCceEeccccccccCCCeEE
Confidence 9999954222 1111221 12233 4566666899999985
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=202.76 Aligned_cols=283 Identities=10% Similarity=0.085 Sum_probs=164.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCc-----cccccCCCCCCCC-----
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPK-----QLYQFSDYPWPDS----- 68 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~----- 68 (418)
|..+||||||||++|+++|..|++. +.+|+|||+.+.++. .....+..+.... ..+.|..++....
T Consensus 9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y--~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (493)
T 1m6i_A 9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY--MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ 86 (493)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB--CSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC--CCCCCCHHhhcCCccchhhccccccccccccccccc
Confidence 3568999999999999999999886 789999999875541 1110010010000 0011111110000
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeE
Q 014821 69 VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 148 (418)
....+.....+.+ ..++++ .++.+++|..++... ++|.+.++ .+
T Consensus 87 ~~~~~~~~~~l~~-----~~~~gv--~~~~g~~v~~id~~~------------------------~~V~~~~g-----~~ 130 (493)
T 1m6i_A 87 PPSFYVSAQDLPH-----IENGGV--AVLTGKKVVQLDVRD------------------------NMVKLNDG-----SQ 130 (493)
T ss_dssp CGGGSBCTTTTTT-----STTCEE--EEEETCCEEEEEGGG------------------------TEEEETTS-----CE
T ss_pred chHhhcchhhhhh-----hhcCCe--EEEcCCEEEEEECCC------------------------CEEEECCC-----CE
Confidence 0001111111100 123455 677788999998765 56777665 57
Q ss_pred EEeCEEEEeeccCCCCCCCCCCCCCCCCC--CCCceEEeccCCCCchhh--hhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPE--AFHGKVIHSMDYSDMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 149 i~~d~vIlAtG~~~~~p~~p~~~~~~g~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
+.||+||+|||+. |..|+++ +.. .+...+.. +....+. .......+++|+|||+|.+|+|+|..|..
T Consensus 131 i~yd~lviATGs~---p~~~~~~---~~~~~~~~~~v~~---~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~ 201 (493)
T 1m6i_A 131 ITYEKCLIATGGT---PRSLSAI---DRAGAEVKSRTTL---FRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGR 201 (493)
T ss_dssp EEEEEEEECCCEE---ECCCHHH---HTSCHHHHHTEEE---CCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHH
T ss_pred EECCEEEECCCCC---CCCCCCc---ccccccccCceEE---EcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHh
Confidence 9999999999954 6665544 321 11112222 1111111 11223458999999999999999999987
Q ss_pred hcCC-CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 225 ANGL-ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 225 ~~~~-~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
.+.. ..+|+++.+.+.++..... ..
T Consensus 202 ~~~~~g~~V~~v~~~~~~~~~~l~-----------~~------------------------------------------- 227 (493)
T 1m6i_A 202 KARALGTEVIQLFPEKGNMGKILP-----------EY------------------------------------------- 227 (493)
T ss_dssp HHHHHTCEEEEECSSSSTTTTTSC-----------HH-------------------------------------------
T ss_pred hhhhcCCEEEEEecCcccccccCC-----------HH-------------------------------------------
Confidence 4210 1248988876532211100 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C--cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~--~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+.+.+++.+|+++.+. +..++. + .|.+++|++ +++|.||+|+|++++.
T Consensus 228 ----------------------~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~-i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 228 ----------------------LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRK-VETDHIVAAVGLEPNV 284 (493)
T ss_dssp ----------------------HHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCE-EEESEEEECCCEEECC
T ss_pred ----------------------HHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCE-EECCEEEECCCCCccH
Confidence 01112345566788888885 777753 2 367889988 9999999999999996
Q ss_pred chhccccchhhhhhhcCCC--CCCccceeeeeeccCcccc
Q 014821 379 KLKNIFLSQTFQDYLAGSP--TEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 416 (418)
.+++. ..+... .+++.++..+.+ .|+||.
T Consensus 285 ~l~~~--------~gl~~~~~~ggi~Vd~~l~t-~~~IyA 315 (493)
T 1m6i_A 285 ELAKT--------GGLEIDSDFGGFRVNAELQA-RSNIWV 315 (493)
T ss_dssp TTHHH--------HTCCBCTTTCSEECCTTCEE-ETTEEE
T ss_pred HHHHH--------cCCccccCCCcEEECCCccc-CCCeeE
Confidence 54432 222222 356777666643 588885
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-22 Score=208.12 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=159.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++||+|||||++|+++|..|++.|++|+|||+++.+||.|.. .+++ +.....+.
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~------------------------~~~~~~~~ 446 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPG------------------------LSAWGRVK 446 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTT------------------------CGGGGHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCc------------------------hhHHHHHH
Confidence 579999999999999999999999999999999999988765 2221 12335778
Q ss_pred HHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 81 DYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 81 ~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.|+...+.++ ++ .+.+++++ +..+. .++.+|+||+|||
T Consensus 447 ~~~~~~~~~~~gv--~~~~~~~v----------------------------------~~~~~-----~~~~~d~lvlAtG 485 (690)
T 3k30_A 447 EYREAVLAELPNV--EIYRESPM----------------------------------TGDDI-----VEFGFEHVITATG 485 (690)
T ss_dssp HHHHHHHHTCTTE--EEESSCCC----------------------------------CHHHH-----HHTTCCEEEECCC
T ss_pred HHHHHHHHHcCCC--EEEECCee----------------------------------cHHHH-----hhcCCCEEEEcCC
Confidence 8888888876 66 55554332 11111 3577999999999
Q ss_pred cCCCC-----CCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEc--CCCCHHHHHHHHhhhcCCCCCe
Q 014821 160 RFSDV-----PNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG--LQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 160 ~~~~~-----p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG--~G~sa~e~a~~l~~~~~~~~~V 232 (418)
+.+.. |..|.++ |.+. ..+++..++.. .....+++|+||| +|.+|+|+|..|...+.. |
T Consensus 486 ~~~~~~~~~~~~~~~i~---G~~~--~~v~~~~~~l~------~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~---V 551 (690)
T 3k30_A 486 ATWRTDGVARFHTTALP---IAEG--MQVLGPDDLFA------GRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYE---V 551 (690)
T ss_dssp EEECSSCCSSSCSSCCC---BCTT--SEEECHHHHHT------TCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCE---E
T ss_pred CccccccccccCCCCCC---CCCC--CcEEcHHHHhC------CCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCe---e
Confidence 76211 4566666 6542 34555544332 2345678999999 999999999999998765 9
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++.+.+.. .+...
T Consensus 552 tlv~~~~~l-~~~~~----------------------------------------------------------------- 565 (690)
T 3k30_A 552 SIVTPGAQV-SSWTN----------------------------------------------------------------- 565 (690)
T ss_dssp EEEESSSST-TGGGG-----------------------------------------------------------------
T ss_pred EEEeccccc-ccccc-----------------------------------------------------------------
Confidence 999987742 21100
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEc-----CCceeeeccEEEEccCCCCCcchhccc
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVD-----GQTTPLKTDLVILATGFKGDVKLKNIF 384 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~-----~g~~~~~~D~Vi~atG~~~~~~~~~~l 384 (418)
.+.....+.+.+++.+|+++.+. +..++.+++.+. ++++ +++|.||+|||++++..+...+
T Consensus 566 ----------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~-i~aD~VV~A~G~~p~~~l~~~l 632 (690)
T 3k30_A 566 ----------NTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERE-LECDAVVMVTARLPREELYLDL 632 (690)
T ss_dssp ----------GGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEE-EECSEEEEESCEEECCHHHHHH
T ss_pred ----------cchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEE-EECCEEEECCCCCCChHHHHHH
Confidence 00011223456677789999886 888888876553 3455 9999999999999997766544
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-21 Score=202.37 Aligned_cols=144 Identities=26% Similarity=0.404 Sum_probs=103.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++||+|||||++|+++|..|++.|++|+|||+++.+||.|.. ..++ .....++.
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~------------------------~~~~~~~~ 428 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG------------------------KEEFYETL 428 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTT------------------------CTTHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCC------------------------HHHHHHHH
Confidence 579999999999999999999999999999999888887654 1111 01123455
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEE-EeCEEEEeec
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH-QVDFVILCVG 159 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i-~~d~vIlAtG 159 (418)
.++...++++++ .+++++.|.. ..+ .||+||+|||
T Consensus 429 ~~~~~~~~~~gv--~~~~~~~v~~------------------------------------------~~~~~~d~lviAtG 464 (671)
T 1ps9_A 429 RYYRRMIEVTGV--TLKLNHTVTA------------------------------------------DQLQAFDETILASG 464 (671)
T ss_dssp HHHHHHHHHHTC--EEEESCCCCS------------------------------------------SSSCCSSEEEECCC
T ss_pred HHHHHHHHHcCC--EEEeCcEecH------------------------------------------HHhhcCCEEEEccC
Confidence 666677777777 6666543210 013 7999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
+ .|..|.++ |.+. ..+++..++.. .....+++|+|||+|.+|+|+|..|...+..
T Consensus 465 ~---~p~~~~i~---G~~~--~~v~~~~~~l~------~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~ 519 (671)
T 1ps9_A 465 I---VPRTPPID---GIDH--PKVLSYLDVLR------DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES 519 (671)
T ss_dssp E---EECCCCCB---TTTS--TTEEEHHHHHT------SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred C---CcCCCCCC---CCCC--CcEeeHHHHhh------CCCCCCCeEEEECCChhHHHHHHHHHhcCCC
Confidence 5 47777777 6543 23555433221 1234689999999999999999999887653
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-21 Score=203.96 Aligned_cols=166 Identities=21% Similarity=0.218 Sum_probs=111.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
.+||+|||||++|+++|..|++.|++|+|||+.+.+||.|.. .+|+ ++....+.
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg------------------------~~~~~~~~ 444 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPG------------------------LGEWSYHR 444 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTT------------------------CGGGHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCC------------------------hHHHHHHH
Confidence 479999999999999999999999999999999999988766 2221 11123455
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+|++..++.+.. .+..++.+..+ ..+++.+. ..+.||+||+|||+
T Consensus 445 ~~~~~~i~~~~~-----~~~~~v~i~~~-------------------------~~v~~~~~-----~~~~~d~vviAtG~ 489 (729)
T 1o94_A 445 DYRETQITKLLK-----KNKESQLALGQ-------------------------KPMTADDV-----LQYGADKVIIATGA 489 (729)
T ss_dssp HHHHHHHHHHHH-----HSTTCEEECSC-------------------------CCCCHHHH-----HTSCCSEEEECCCE
T ss_pred HHHHHHHHHhhc-----ccCCceEEEeC-------------------------eEEehhhc-----cccCCCEEEEcCCC
Confidence 565555544310 00111222111 11222222 35789999999997
Q ss_pred CCCC-----CCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEc--CCCCHHHHHHHHhhhcCCCCCeE
Q 014821 161 FSDV-----PNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG--LQKSALDIAMECTTANGLENPCT 233 (418)
Q Consensus 161 ~~~~-----p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG--~G~sa~e~a~~l~~~~~~~~~V~ 233 (418)
.+.. |..|+++ |.+.+...+++..++.. .....+++|+||| +|.+|+|+|..|...+.. |+
T Consensus 490 ~~~~~~~~~p~~~~ip---G~~~~~~~v~~~~~~l~------~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~---Vt 557 (729)
T 1o94_A 490 RWNTDGTNCLTHDPIP---GADASLPDQLTPEQVMD------GKKKIGKRVVILNADTYFMAPSLAEKLATAGHE---VT 557 (729)
T ss_dssp EECSSCCCTTTSSCCT---TCCTTSTTEECHHHHHH------CCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE---EE
T ss_pred CcccccccCccCCCCC---CccccCCCEEEHHHHhc------CCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCE---EE
Confidence 6221 5667777 77654445665544321 2335678999999 999999999999998765 99
Q ss_pred EEEecC
Q 014821 234 VLYRTE 239 (418)
Q Consensus 234 ~~~r~~ 239 (418)
+++|.+
T Consensus 558 lv~~~~ 563 (729)
T 1o94_A 558 IVSGVH 563 (729)
T ss_dssp EEESSC
T ss_pred EEeccc
Confidence 999876
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=185.74 Aligned_cols=169 Identities=21% Similarity=0.200 Sum_probs=114.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
.+||+|||||++|+.+|..|++.+ .+|+|||+.+.++|.|+.... +.++...++.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------p~~~~~~~~~ 62 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKNVI 62 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGGHH
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------CCCccHHHHH
Confidence 479999999999999999999988 899999999888887755211 1122335677
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++...++++++ .++.++.+. . .|++.+. .+.||+||+|||+
T Consensus 63 ~~~~~~~~~~gv--~~~~~~~v~-----~-------------------------~V~~~~~------~~~~d~lVlAtGs 104 (460)
T 1cjc_A 63 NTFTQTARSDRC--AFYGNVEVG-----R-------------------------DVTVQEL------QDAYHAVVLSYGA 104 (460)
T ss_dssp HHHHHHHTSTTE--EEEBSCCBT-----T-------------------------TBCHHHH------HHHSSEEEECCCC
T ss_pred HHHHHHHHhCCc--EEEeeeEEe-----e-------------------------EEEeccc------eEEcCEEEEecCc
Confidence 788888887777 666655431 1 1222221 3689999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCc----hhhh-hhhhcCCCEEEEEcCCCCHHHHHHHHhh-----------
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDM----DYEA-AANLVKGKRVTVVGLQKSALDIAMECTT----------- 224 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~v~VvG~G~sa~e~a~~l~~----------- 224 (418)
. .|..|+++ |.+ .. .+++...+..+ .+.. ......+++|+|||+|.+|+|+|..|..
T Consensus 105 ~--~~~~~~ip---G~~-~~-gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~ 177 (460)
T 1cjc_A 105 E--DHQALDIP---GEE-LP-GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDIT 177 (460)
T ss_dssp C--EECCCCCT---TTT-ST-TEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCC
T ss_pred C--CCCCCCCC---CCC-CC-cEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhcccccc
Confidence 5 13667777 654 22 24554333110 0000 0011257999999999999999999983
Q ss_pred ---------hcCCCCCeEEEEecCcc
Q 014821 225 ---------ANGLENPCTVLYRTEHW 241 (418)
Q Consensus 225 ---------~~~~~~~V~~~~r~~~~ 241 (418)
.+. ++|+++.|++..
T Consensus 178 ~~a~~~l~~~g~--~~V~lv~r~~~~ 201 (460)
T 1cjc_A 178 EAALGALRQSRV--KTVWIVGRRGPL 201 (460)
T ss_dssp HHHHHHHHTCCC--CEEEEECSSCGG
T ss_pred HHHHHHHhhCCC--cEEEEEEcCChH
Confidence 232 359999998854
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=198.75 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=118.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|++.|++|+|||+++.+||.|.. .+...+ ... ...++...
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~-~~k~~i-------------------~~~-~~~~~~~~ 186 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD-TAGEQI-------------------DGM-DSSAWIEQ 186 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG-SSCCEE-------------------TTE-EHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc-CCcccc-------------------CCC-CHHHHHHH
Confidence 479999999999999999999999999999999889988773 111111 000 12344444
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC-CCceeEEEeCEEEEeecc
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK-NHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~~d~vIlAtG~ 160 (418)
+.+...++ ++ .+..+++|.++.... ...... . ..+.+.+...+.. .+...++.||+||||||+
T Consensus 187 ~~~~l~~~~~v--~~~~~~~V~~i~~~~----~~~~v~-------~--~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs 251 (965)
T 2gag_A 187 VTSELAEAEET--THLQRTTVFGSYDAN----YLIAAQ-------R--RTVHLDGPSGPGVSRERIWHIRAKQVVLATGA 251 (965)
T ss_dssp HHHHHHHSTTE--EEESSEEEEEEETTT----EEEEEE-------E--CSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE
T ss_pred HHHHHhhcCCc--EEEeCCEEEeeecCC----ceeeeE-------e--ecccccccccccCCCCceEEEECCEEEECCCC
Confidence 44445554 66 678888898886433 000000 0 0000111110000 012247999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
. |..|.++ |.+. ..++++..+..... ......+++|+|||+|.+|+|+|..|...+.. |+++.+++.
T Consensus 252 ~---p~~~~ip---G~~~--~gv~~~~~~~~~l~--~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~---Vtvv~~~~~ 318 (965)
T 2gag_A 252 H---ERPIVFE---NNDR--PGIMLAGAVRSYLN--RYGVRAGARIAVATTNDSAYELVRELAATGGV---VAVIDARSS 318 (965)
T ss_dssp E---ECCCCCB---TCCS--TTEEEHHHHHHHHH--TTCEESCSSEEEEESSTTHHHHHHHHGGGTCC---SEEEESCSS
T ss_pred c---cCCCCCC---CCCC--CCEEEhHHHHHHHH--hcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCc---EEEEECCCc
Confidence 4 6667677 6542 23454432211110 01223568999999999999999999998765 999998764
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-20 Score=184.81 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=56.2
Q ss_pred hhhccCcEEEeccC-ceeEecCcEEEcC--C-ceeeeccEEEEccCCCCCcchhccccchhhhhhh---cCCCCCCccce
Q 014821 332 DKVEEGSIILKKSQ-DFSFCEDGIVVDG--Q-TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL---AGSPTEKLPLY 404 (418)
Q Consensus 332 ~~~~~~~v~~~~~~-v~~~~~~~v~~~~--g-~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 404 (418)
+.+++.+|+++.+. +..++++++.+++ | .+++++|.||+|+|++++. ++.... ..+.++.+.++
T Consensus 208 ~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~---------~~~~~~~~l~~~~~g~i~vd 278 (430)
T 3hyw_A 208 DLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPE---------VVASAGDKVANPANKMVIVN 278 (430)
T ss_dssp HHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCH---------HHHTTCTTTBCTTTCCBCCC
T ss_pred HHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCch---------HHHhcccccccCCceEEEec
Confidence 45667789999997 8899999888764 2 2239999999999999882 233221 21335668888
Q ss_pred eee-eeccCcccc
Q 014821 405 RSA-HIYIDTLTY 416 (418)
Q Consensus 405 ~~~-~~~~~~~~~ 416 (418)
..+ ++++||||.
T Consensus 279 ~~lq~t~~~~IfA 291 (430)
T 3hyw_A 279 RCFQNPTYKNIFG 291 (430)
T ss_dssp TTSBCSSSTTEEE
T ss_pred ccccCCCCCCEEE
Confidence 888 799999995
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=170.72 Aligned_cols=267 Identities=12% Similarity=0.057 Sum_probs=154.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
-|+|||||||++|+++|..|++.+ .+|+|||+++... ..+.... ..... . +...+.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~-----~~p~~~~-v~~g~-------~---------~~~~~~ 59 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY-----TCYMSNE-VIGGD-------R---------ELASLR 59 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE-----CSTTHHH-HHHTS-------S---------CGGGGE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC-----CccCHHH-HhcCC-------C---------CHHHHh
Confidence 378999999999999999998865 5899999976321 0010000 00000 0 000111
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.-++.+ ...++ ++. ..+|++|+.+. ..|.+.++ .++.||+||+|||+
T Consensus 60 ~~~~~~-~~~gv--~~i-~~~v~~id~~~------------------------~~v~~~~g-----~~i~yd~LviAtG~ 106 (401)
T 3vrd_B 60 VGYDGL-RAHGI--QVV-HDSALGIDPDK------------------------KLVKTAGG-----AEFAYDRCVVAPGI 106 (401)
T ss_dssp ECSHHH-HHTTC--EEE-CSCEEEEETTT------------------------TEEEETTS-----CEEECSEEEECCCE
T ss_pred hCHHHH-HHCCC--EEE-EeEEEEEEccC------------------------cEEEeccc-----ceeecceeeeccCC
Confidence 111112 23465 443 46899998765 45777666 58999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCc-eEEeccCCCCchhhhhh--hhcCCCEEEEEcCCCC-----------HHHHHHHHhhhc
Q 014821 161 FSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAA--NLVKGKRVTVVGLQKS-----------ALDIAMECTTAN 226 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G~s-----------a~e~a~~l~~~~ 226 (418)
. +.++.++ |.+.... ...|+....+....... ........+|++.|.. +.+++..+...+
T Consensus 107 ~---~~~~~i~---G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~ 180 (401)
T 3vrd_B 107 D---LLYDKIE---GYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHK 180 (401)
T ss_dssp E---ECGGGSB---TCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHC
T ss_pred c---cccCCcc---CchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcC
Confidence 4 6666666 6554321 12222211111100001 1123344455554433 235555555554
Q ss_pred CCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhccc
Q 014821 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKF 306 (418)
Q Consensus 227 ~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (418)
.. .+|+++.+.+...... .+...+...
T Consensus 181 ~~-~~v~i~~~~~~~~~~~------------------------------------------~~~~~~~~~---------- 207 (401)
T 3vrd_B 181 SK-SKVIILDNSQTFSKQA------------------------------------------QFTKGWERL---------- 207 (401)
T ss_dssp TT-CEEEEECSSSSCTTHH------------------------------------------HHHHHHHHH----------
T ss_pred CC-CEEEEEcccccccccc------------------------------------------cccHHHHHH----------
Confidence 43 4688888765421110 000000000
Q ss_pred CCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec----CcEEEcCCceeeeccEEEEccCCCCCcchh
Q 014821 307 GMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE----DGIVVDGQTTPLKTDLVILATGFKGDVKLK 381 (418)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~----~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~ 381 (418)
+...+++..|+++.+. +..++. ..+.+++|++ +++|.|++|+|.+++
T Consensus 208 -----------------------~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~-i~~D~vi~~~g~~~~---- 259 (401)
T 3vrd_B 208 -----------------------YGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGET-FKAAVINLIPPQRAG---- 259 (401)
T ss_dssp -----------------------SCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCE-EECSEEEECCCEEEC----
T ss_pred -----------------------HHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcE-EEeeEEEEecCcCCc----
Confidence 1124566778888876 555542 2488899999 999999999999887
Q ss_pred ccccchhhhhhhcCCCCCCccceee-e-eeccCcccc
Q 014821 382 NIFLSQTFQDYLAGSPTEKLPLYRS-A-HIYIDTLTY 416 (418)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 416 (418)
.++.+..+.+..|++.++.. + ++++||||.
T Consensus 260 -----~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfA 291 (401)
T 3vrd_B 260 -----KIAQSASLTNDSGWCPVDIRTFESSLQPGIHV 291 (401)
T ss_dssp -----HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEE
T ss_pred -----hhHhhccccccCCCEEECCCcceecCCCCEEE
Confidence 45566666677889999876 4 899999995
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-19 Score=191.73 Aligned_cols=174 Identities=16% Similarity=0.235 Sum_probs=112.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
.+||+|||||++|+++|..|++.|+ +|+|||+.+.+||.+....|.. ....++.+
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~------------------------~~~~~~~~ 242 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQF------------------------RLPYDVVN 242 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTT------------------------TSCHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcc------------------------cCCHHHHH
Confidence 4689999999999999999999999 7999999888998765433321 11134566
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+..+.++++++ .+.+++.+.. ..+++.+. ..+.||+||+|||+.
T Consensus 243 ~~~~~~~~~gv--~~~~~~~v~~-----------------------------~~v~~~~~-----~~~~~d~vvlAtGa~ 286 (1025)
T 1gte_A 243 FEIELMKDLGV--KIICGKSLSE-----------------------------NEITLNTL-----KEEGYKAAFIGIGLP 286 (1025)
T ss_dssp HHHHHHHTTTC--EEEESCCBST-----------------------------TSBCHHHH-----HHTTCCEEEECCCCC
T ss_pred HHHHHHHHCCc--EEEcccEecc-----------------------------ceEEhhhc-----CccCCCEEEEecCCC
Confidence 66677777787 6666554410 11333332 246799999999963
Q ss_pred CCCCCCCCC-CCCCCCCCCCceEEeccCCCCchhhh--------hh-hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCC
Q 014821 162 SDVPNIPEF-PPKKGPEAFHGKVIHSMDYSDMDYEA--------AA-NLVKGKRVTVVGLQKSALDIAMECTTANGLENP 231 (418)
Q Consensus 162 ~~~p~~p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~ 231 (418)
.|..+++ + |.+... .++++.++....... .. ....+++|+|||+|.+|+|+|..+...|. ++
T Consensus 287 --~p~~l~~~~---G~~~~~-gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~--~~ 358 (1025)
T 1gte_A 287 --EPKTDDIFQ---GLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGA--RR 358 (1025)
T ss_dssp --EECCCGGGT---TCCTTT-TEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTC--SE
T ss_pred --CCCCCCCCC---CCCCCC-CEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCC--CE
Confidence 3554432 3 333222 244433321100000 00 01236799999999999999999988875 25
Q ss_pred eEEEEecCccccc
Q 014821 232 CTVLYRTEHWNIP 244 (418)
Q Consensus 232 V~~~~r~~~~~~~ 244 (418)
|++++|++..+++
T Consensus 359 Vtvv~r~~~~~~~ 371 (1025)
T 1gte_A 359 VFLVFRKGFVNIR 371 (1025)
T ss_dssp EEEECSSCGGGCC
T ss_pred EEEEEecChhhCC
Confidence 9999998754444
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=175.22 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=100.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|++. .+|+|||+++.+||.|...... .+. ++ . ...++...
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~--------~~g-----~~----~---~~~~~~~~ 166 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK--------QEG-----FN----K---DSRKVVEE 166 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE--------ETT-----TT----E---EHHHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc--------cCC-----CC----C---CHHHHHHH
Confidence 46999999999999999999999 9999999998888876652110 000 00 0 22333333
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.. +.++ .++++++|.+++... +.+.+...+. +....+.||+||+|||+.
T Consensus 167 l~~~l-~~~v--~~~~~~~v~~i~~~~----------------------~~~~~~~~~~--~~~~~~~~d~lvlAtGa~- 218 (493)
T 1y56_A 167 LVGKL-NENT--KIYLETSALGVFDKG----------------------EYFLVPVVRG--DKLIEILAKRVVLATGAI- 218 (493)
T ss_dssp HHHTC-CTTE--EEETTEEECCCEECS----------------------SSEEEEEEET--TEEEEEEESCEEECCCEE-
T ss_pred HHHHH-hcCC--EEEcCCEEEEEEcCC----------------------cEEEEEEecC--CeEEEEECCEEEECCCCC-
Confidence 33222 3355 677888998888765 4455543222 333479999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
|..|.++ |.+. . .++....+.... ......++++++|||+|.+|+|
T Consensus 219 --~~~~~~~---g~~~-~-gv~~~~~~~~~~--~~~~~~~~~~vvViGgG~~gle 264 (493)
T 1y56_A 219 --DSTMLFE---NNDM-P-GVFRRDFALEVM--NVWEVAPGRKVAVTGSKADEVI 264 (493)
T ss_dssp --ECCCCCT---TTTS-T-TEEEHHHHHHHH--HTSCBCSCSEEEEESTTHHHHH
T ss_pred --ccCCCCC---CCCC-C-CEEEcHHHHHHH--HhcccCCCCEEEEECCCHHHHH
Confidence 6666676 6542 2 244432221110 0011345789999999999998
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=131.65 Aligned_cols=136 Identities=18% Similarity=0.304 Sum_probs=88.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcce--e---cCCccccc------------c---
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTM--L---QTPKQLYQ------------F--- 60 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~--l---~~~~~~~~------------~--- 60 (418)
|+.+||+|||||++|+++|..|+++|.+|+|||+++.+|+.|...-.+.. . ..|...+. |
T Consensus 2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence 45689999999999999999999999999999999888765432000000 0 00100000 0
Q ss_pred --------CCCCCCC-CCCCCCC--ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 61 --------SDYPWPD-SVTTDFP--DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 61 --------~~~~~~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
...++.. .....|+ ....+.+++...+++.++ +++++++|+++...+ +.
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv--~i~~~~~v~~i~~~~--~g---------------- 141 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQ--ND---------------- 141 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECC--SC----------------
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEccc--Cc----------------
Confidence 0011100 0111222 567888889998888898 899999999998762 00
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++.|.|.+.++ ++.||+||+|||..+
T Consensus 142 ~~~~~~v~~~~g------~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 142 EKVRFVLQVNST------QWQCKNLIVATGGLS 168 (401)
T ss_dssp SSCCEEEEETTE------EEEESEEEECCCCSS
T ss_pred CCCeEEEEECCC------EEECCEEEECCCCcc
Confidence 013477765432 699999999999873
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=122.45 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc----------c-------------CCcceecCCccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK----------T-------------VETTMLQTPKQL 57 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~----------~-------------~~~~~l~~~~~~ 57 (418)
|+++||+|||||++|+++|..|+++|++|+|||+++.+|..... . ..+.++..+...
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEK 81 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCc
Confidence 88999999999999999999999999999999998766432110 0 000111111110
Q ss_pred cccC-CCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 58 YQFS-DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 58 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
.... ..............+..+...|.+.+.+.|. .+.++++|+++..+. +....+
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~--~~~~~~~v~~~~~~~---------------------~~~~~v 138 (397)
T 3oz2_A 82 RPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGA--DVWVKSPALGVIKEN---------------------GKVAGA 138 (397)
T ss_dssp SCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTC--EEESSCCEEEEEEET---------------------TEEEEE
T ss_pred eEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCc--EEeeeeeeeeeeecc---------------------ceeeee
Confidence 0000 0000000011224678888899999888898 899999999988766 111222
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCC
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.... ++...++.+|.||.|+|..|
T Consensus 139 ~~~~--~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 139 KIRH--NNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EEEE--TTEEEEEEEEEEEECCCTTC
T ss_pred eecc--cccceEEEEeEEEeCCcccc
Confidence 2222 24556899999999999885
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=117.66 Aligned_cols=134 Identities=14% Similarity=0.301 Sum_probs=88.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccccc------------CCccee-cCCcccc----cc----
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT------------VETTML-QTPKQLY----QF---- 60 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~------------~~~~~l-~~~~~~~----~~---- 60 (418)
+.+||+|||||++|+++|..|++.|.+|+|||+++.+|+.+... .+...+ ..+.... .|
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD 105 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence 35799999999999999999999999999999999887654210 000000 0000000 00
Q ss_pred -------CCCCCCCC-CCCCC--CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 61 -------SDYPWPDS-VTTDF--PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 61 -------~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
...++... ....| .....+.+.+.+.+++.++ .++++++|+++...+
T Consensus 106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv--~i~~~~~V~~i~~~~--------------------- 162 (417)
T 3v76_A 106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGV--QLRLETSIGEVERTA--------------------- 162 (417)
T ss_dssp HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTC--EEECSCCEEEEEEET---------------------
T ss_pred HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCC--EEEECCEEEEEEEeC---------------------
Confidence 00110000 00111 2456888889888888898 899999999998876
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.|.|.+.++ ++.||.||+|+|..| .|.
T Consensus 163 -~~~~V~~~~g------~i~ad~VIlAtG~~S-~p~ 190 (417)
T 3v76_A 163 -SGFRVTTSAG------TVDAASLVVASGGKS-IPK 190 (417)
T ss_dssp -TEEEEEETTE------EEEESEEEECCCCSS-CGG
T ss_pred -CEEEEEECCc------EEEeeEEEECCCCcc-CCC
Confidence 4577766543 799999999999883 443
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-11 Score=101.12 Aligned_cols=108 Identities=21% Similarity=0.397 Sum_probs=79.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
+||+|||||++|+.+|..|++.|.+++|+|+.+..-. .. .....+..+ .......++.+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~---~~---------~~~~~~~~~-------~~~~~~~~~~~~l 62 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVK---GV---------SRVPNYPGL-------LDEPSGEELLRRL 62 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTT---TC---------SCCCCSTTC-------TTCCCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccc---Cc---------hhhhccCCC-------cCCCCHHHHHHHH
Confidence 7999999999999999999999999999999762210 00 000001100 0123457889999
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.++++++ ++.++ +|++++..+ +.+.|.+.++ ++.||.||+|+|..
T Consensus 63 ~~~~~~~gv--~v~~~-~v~~i~~~~----------------------~~~~v~~~~g------~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 63 EAHARRYGA--EVRPG-VVKGVRDMG----------------------GVFEVETEEG------VEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHTTC--EEEEC-CCCEEEECS----------------------SSEEEECSSC------EEEEEEEEECCTTC
T ss_pred HHHHHHcCC--EEEeC-EEEEEEEcC----------------------CEEEEEECCC------EEEECEEEECCCCC
Confidence 999999998 88888 999998765 4466765433 79999999999965
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-11 Score=106.75 Aligned_cols=123 Identities=22% Similarity=0.183 Sum_probs=81.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCcccc-ccCCCCCCCCCCCCCCChhHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLY-QFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|+.+||+|||||++|+++|..|++.|.+++|||++....|.+ ..+...-......+ .+.+ ..-+.+..+
T Consensus 1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~--~~~~~~~~~~~~~~~~~~d--------~~g~~~~~~ 70 (232)
T 2cul_A 1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP--FLPPKPPFPPGSLLERAYD--------PKDERVWAF 70 (232)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC--SSCCCSCCCTTCHHHHHCC--------TTCCCHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcc--cCccccccchhhHHhhhcc--------CCCCCHHHH
Confidence 788999999999999999999999999999999974333322 11111000000000 0000 011256688
Q ss_pred HHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 80 LDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 80 ~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
..++.+.++++ ++ .++ +++|+++...+ +..+.|.+.++ .++.||+||+|+
T Consensus 71 ~~~l~~~~~~~~gv--~i~-~~~v~~i~~~~---------------------~~v~~v~~~~g-----~~i~a~~VV~A~ 121 (232)
T 2cul_A 71 HARAKYLLEGLRPL--HLF-QATATGLLLEG---------------------NRVVGVRTWEG-----PPARGEKVVLAV 121 (232)
T ss_dssp HHHHHHHHHTCTTE--EEE-ECCEEEEEEET---------------------TEEEEEEETTS-----CCEECSEEEECC
T ss_pred HHHHHHHHHcCCCc--EEE-EeEEEEEEEeC---------------------CEEEEEEECCC-----CEEECCEEEECC
Confidence 88999988887 77 566 67999998765 22245665554 479999999999
Q ss_pred ccCC
Q 014821 159 GRFS 162 (418)
Q Consensus 159 G~~~ 162 (418)
|.++
T Consensus 122 G~~s 125 (232)
T 2cul_A 122 GSFL 125 (232)
T ss_dssp TTCS
T ss_pred CCCh
Confidence 9763
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=113.83 Aligned_cols=129 Identities=21% Similarity=0.333 Sum_probs=87.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccC----CcceecCCccccccC---------------
Q 014821 4 KQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTV----ETTMLQTPKQLYQFS--------------- 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~----~~~~l~~~~~~~~~~--------------- 61 (418)
+||+|||||++|+++|+.|++ .|++|+|||++..+||.+.... ....+......+...
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL 81 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence 799999999999999999999 8999999999999998776621 222222211111000
Q ss_pred --C--CCCCCC--------CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 62 --D--YPWPDS--------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 62 --~--~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
. .+|... ....|.....+..+++..+++.+. .++++++|++|+..+
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~--~i~~~~~V~~i~~~~-------------------- 139 (342)
T 3qj4_A 82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGA--EVYFRHRVTQINLRD-------------------- 139 (342)
T ss_dssp HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTC--EEESSCCEEEEEECS--------------------
T ss_pred hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCC--EEEeCCEEEEEEEcC--------------------
Confidence 0 011100 011122233445566666666677 899999999999876
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.|+|.+.++ .++.+|.||+|+...
T Consensus 140 --~~~~v~~~~g-----~~~~ad~vV~A~p~~ 164 (342)
T 3qj4_A 140 --DKWEVSKQTG-----SPEQFDLIVLTMPVP 164 (342)
T ss_dssp --SSEEEEESSS-----CCEEESEEEECSCHH
T ss_pred --CEEEEEECCC-----CEEEcCEEEECCCHH
Confidence 5698888765 357999999999853
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=113.55 Aligned_cols=135 Identities=20% Similarity=0.238 Sum_probs=87.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC----CCccccc-c------C--------------CcceecCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD----IGGAWIK-T------V--------------ETTMLQTPKQL 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~----~gg~~~~-~------~--------------~~~~l~~~~~~ 57 (418)
.+||+|||||++|+++|..|+++|++|+|+|+... .|..... . . .+..+......
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 84 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI 84 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence 48999999999999999999999999999999762 2221111 0 0 00000000000
Q ss_pred --cccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 58 --YQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 58 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
+.+...............+..+...|.+.+.+.|+ .++++++|++++..+ +.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv--~i~~~~~v~~i~~~~----------------------~~~~ 140 (421)
T 3nix_A 85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGV--DVEYEVGVTDIKFFG----------------------TDSV 140 (421)
T ss_dssp EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTC--EEECSEEEEEEEEET----------------------TEEE
T ss_pred EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeC----------------------CEEE
Confidence 01110000000012235678888999999888898 899999999999876 4455
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+... +|...++.+|.||+|+|..|
T Consensus 141 v~v~~~-~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 141 TTIEDI-NGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp EEEEET-TSCEEEEEEEEEEECCGGGC
T ss_pred EEEEcC-CCCEEEEEcCEEEECCCCch
Confidence 555432 24445799999999999875
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-10 Score=113.09 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=90.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------------------cCC--cc------ee
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------------------TVE--TT------ML 51 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------------------~~~--~~------~l 51 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+..+..-+. ..+ .. ..
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 84 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLA 84 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEE
T ss_pred cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEE
Confidence 589999999999999999999999999999998755321000 000 00 00
Q ss_pred cCCc--ccc----ccCC----CCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCccccccccc
Q 014821 52 QTPK--QLY----QFSD----YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFW 121 (418)
Q Consensus 52 ~~~~--~~~----~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~ 121 (418)
.... ... .+.. ............++..+..+|.+.+.+.+. .++++++|++++..+ +..
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~--~~~------- 153 (535)
T 3ihg_A 85 ESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGG--AIRFGTRLLSFRQHD--DDA------- 153 (535)
T ss_dssp SSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEEC--GGG-------
T ss_pred eccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEECC--CCc-------
Confidence 0000 000 0000 000000013345678899999999998888 899999999999876 000
Q ss_pred CCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 122 NGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...+++++.+++ ...++.||+||.|+|..|
T Consensus 154 ---------~~~v~v~~~~~~--~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 154 ---------GAGVTARLAGPD--GEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp ---------CSEEEEEEEETT--EEEEEEEEEEEECCCTTC
T ss_pred ---------cccEEEEEEcCC--CeEEEEeCEEEECCCCcc
Confidence 016777777653 256899999999999985
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=112.95 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=85.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc---cccc------CC--cc-----eecCCccccccCCC--
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA---WIKT------VE--TT-----MLQTPKQLYQFSDY-- 63 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~---~~~~------~~--~~-----~l~~~~~~~~~~~~-- 63 (418)
+.+||+|||||++|+++|..|+++|++|+|||+.+.+... .... .. ++ ....+...+.+.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 4689999999999999999999999999999998755311 0000 00 00 00000001111000
Q ss_pred -------CCCC-----CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 64 -------PWPD-----SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 64 -------~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
+... ........+..+.+.|.+.+.+ . .++++++|++++..+
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~---------------------- 155 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--D--SVQFGKRVTRCEEDA---------------------- 155 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--G--GEEESCCEEEEEEET----------------------
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--C--EEEECCEEEEEEecC----------------------
Confidence 0000 0012234567788888888766 4 799999999999876
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.++|++.++ .++.+|.||.|+|..|.
T Consensus 156 ~~v~v~~~~g-----~~~~a~~vV~AdG~~S~ 182 (407)
T 3rp8_A 156 DGVTVWFTDG-----SSASGDLLIAADGSHSA 182 (407)
T ss_dssp TEEEEEETTS-----CEEEESEEEECCCTTCS
T ss_pred CcEEEEEcCC-----CEEeeCEEEECCCcChH
Confidence 5678887776 48999999999999863
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=102.07 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=83.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCcc-ccc--cCCcceecCCc-cccccCCCCCCCCCCCC--CC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGA-WIK--TVETTMLQTPK-QLYQFSDYPWPDSVTTD--FP 74 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~-~~~--~~~~~~l~~~~-~~~~~~~~~~~~~~~~~--~~ 74 (418)
..+||+|||||++|+++|..|+++ |.+|+|||+.+.+|+. |.. .+....+..+. .++.-...++... ... ..
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~-~~~~~~~ 116 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQ-DTYVVVK 116 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEEC-SSEEEES
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccC-CCEEEec
Confidence 357999999999999999999997 9999999999877653 322 11111111110 0000001111100 000 01
Q ss_pred ChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec---------CCCC
Q 014821 75 DHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED---------AKNH 144 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~ 144 (418)
...++...+.+.+.+ .++ .++++++|+++.... +....|.+.. +..+
T Consensus 117 ~~~~~~~~l~~~~~~~~gv--~i~~~~~V~~i~~~~---------------------~~v~gv~~~~~~~~~~~~~g~~g 173 (284)
T 1rp0_A 117 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG---------------------NRVGGVVTNWALVAQNHHTQSCM 173 (284)
T ss_dssp CHHHHHHHHHHHHHTSTTE--EEEETEEEEEEEEET---------------------TEEEEEEEEEHHHHTCTTTSSCC
T ss_pred CHHHHHHHHHHHHHhcCCC--EEEcCcEEEEEEecC---------------------CeEEEEEEeccccccccCccccC
Confidence 345666666666654 577 899999999998765 1222344431 1123
Q ss_pred ceeEEEeCEEEEeeccCC
Q 014821 145 STEVHQVDFVILCVGRFS 162 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~ 162 (418)
...++.||.||+|+|..|
T Consensus 174 ~~~~i~ad~VV~AtG~~s 191 (284)
T 1rp0_A 174 DPNVMEAKIVVSSCGHDG 191 (284)
T ss_dssp CCEEEEEEEEEECCCSSS
T ss_pred ceEEEECCEEEECCCCch
Confidence 346899999999999764
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-10 Score=113.23 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=89.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc----ccc-------cC--------------CcceecCC-
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA----WIK-------TV--------------ETTMLQTP- 54 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~----~~~-------~~--------------~~~~l~~~- 54 (418)
|+.+||+|||||++|+++|..|+++|++|+|||+.+..+.. ... .. .+......
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 100 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQ 100 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecC
Confidence 56789999999999999999999999999999997533211 000 00 00000000
Q ss_pred -cc--ccccCCCCCCC-C-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 55 -KQ--LYQFSDYPWPD-S-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 55 -~~--~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
.. .+.|....... . .......+..+...|.+.+.+.|+ .++++++|+++...+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~V~~v~~~~-------------------- 158 (591)
T 3i3l_A 101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGI--TVHEETPVTDVDLSD-------------------- 158 (591)
T ss_dssp SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEECCS--------------------
T ss_pred CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcC--------------------
Confidence 00 00111000000 0 011234678889999999988888 899999999998754
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+..+.|.+.++ |...++.||.||.|+|..|
T Consensus 159 -g~~~~V~~~~~--G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 159 -PDRVVLTVRRG--GESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp -TTCEEEEEEET--TEEEEEEESEEEECCGGGC
T ss_pred -CCEEEEEEecC--CceEEEEcCEEEECCCCcc
Confidence 35677887742 4446899999999999885
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-10 Score=110.08 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccc--cCC---------cc-----eecCCccccccCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIK--TVE---------TT-----MLQTPKQLYQFSDY 63 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~--~~~---------~~-----~l~~~~~~~~~~~~ 63 (418)
|+.+||+|||||++|+++|..|+++|++ |+|||+.+.++..... ..+ ++ ....+...+.+.+.
T Consensus 2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~ 81 (410)
T 3c96_A 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ 81 (410)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcC
Confidence 4578999999999999999999999999 9999998765421110 000 00 00000001111100
Q ss_pred --------CC----CCCCCCCCCChhHHHHHHHHHHHh-cC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 64 --------PW----PDSVTTDFPDHNQVLDYIQSYASH-FD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 64 --------~~----~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
+. ..........+..+.++|.+.+.+ .+ . .++++++|++++. +
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~--~v~~~~~v~~i~~-~-------------------- 138 (410)
T 3c96_A 82 SGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ--AVRTGLGVERIEE-R-------------------- 138 (410)
T ss_dssp TSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTT--SEEESEEEEEEEE-E--------------------
T ss_pred CCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCc--EEEECCEEEEEec-C--------------------
Confidence 00 000011223566788888887766 35 4 6899999999987 6
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.+..+|...++.||.||.|+|..|
T Consensus 139 --~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S 169 (410)
T 3c96_A 139 --DGRVLIGARDGHGKPQALGADVLVGADGIHS 169 (410)
T ss_dssp --TTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred --CccEEEEecCCCCCceEEecCEEEECCCccc
Confidence 4477777663234446899999999999885
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=110.73 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCC---------cc-----eecCCccccccCC--
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVE---------TT-----MLQTPKQLYQFSD-- 62 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~---------~~-----~l~~~~~~~~~~~-- 62 (418)
|+.+||+|||||++|+++|..|+++|++|+|||+.+.+++.-.. ..+ ++ ....+...+.+..
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 88 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCC
Confidence 45689999999999999999999999999999998765421000 000 00 0000000011100
Q ss_pred -----CCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 63 -----YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 63 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.+.. .......++..+.++|.+.+.+.++ .++++++|++++. + + .|+
T Consensus 89 ~~~~~~~~~-~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~-~----------------------~--~v~ 140 (379)
T 3alj_A 89 KSVSKETFN-GLPWRIMTRSHLHDALVNRARALGV--DISVNSEAVAADP-V----------------------G--RLT 140 (379)
T ss_dssp EEEEEECGG-GCCEEEEEHHHHHHHHHHHHHHTTC--EEESSCCEEEEET-T----------------------T--EEE
T ss_pred ceeeeccCC-CCceEEECHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEe-C----------------------C--EEE
Confidence 0000 0012234567888999998888888 8999999999975 4 3 566
Q ss_pred EecCCCCceeEEEeCEEEEeeccCC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.++ .++.||.||.|+|..|
T Consensus 141 ~~~g-----~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 141 LQTG-----EVLEADLIVGADGVGS 160 (379)
T ss_dssp ETTS-----CEEECSEEEECCCTTC
T ss_pred ECCC-----CEEEcCEEEECCCccH
Confidence 6555 4799999999999875
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=113.75 Aligned_cols=132 Identities=21% Similarity=0.365 Sum_probs=84.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-------ccccc--cCCcceecC-----------------Ccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-------GAWIK--TVETTMLQT-----------------PKQ 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-------g~~~~--~~~~~~l~~-----------------~~~ 56 (418)
.+||+|||||++|+++|..|++.|++|+|||+...++ +.|.. ..+...+.. ...
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 3799999999999999999999999999999987552 22332 001000000 000
Q ss_pred ------cc-ccCCCCCCCCC-CCCCC-----ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCC
Q 014821 57 ------LY-QFSDYPWPDSV-TTDFP-----DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNG 123 (418)
Q Consensus 57 ------~~-~~~~~~~~~~~-~~~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~ 123 (418)
.+ .|..+..+... ....+ ....+.+.+.+.+.+.++ .++++++|+++...+
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv--~I~~~t~V~~I~~~~-------------- 250 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGG--EIRFSTRVDDLHMED-------------- 250 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTC--EEESSCCEEEEEESS--------------
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEEeC--------------
Confidence 00 00000000000 00001 125667778888888888 899999999998765
Q ss_pred CCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 124 NGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 124 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+..+.|.+.++ .++.||.||+|+|..+
T Consensus 251 -------~~v~gV~l~~G-----~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 251 -------GQITGVTLSNG-----EEIKSRHVVLAVGHSA 277 (549)
T ss_dssp -------SBEEEEEETTS-----CEEECSCEEECCCTTC
T ss_pred -------CEEEEEEECCC-----CEEECCEEEECCCCCh
Confidence 23455777665 4799999999999874
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-10 Score=108.35 Aligned_cols=131 Identities=24% Similarity=0.338 Sum_probs=82.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-----ccccccCCc-cee-c------------CCccccccC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-----GAWIKTVET-TML-Q------------TPKQLYQFS 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-----g~~~~~~~~-~~l-~------------~~~~~~~~~ 61 (418)
|..+||+|||||++|+++|..|++.|++|+|||+.+.++ +.+...... ..+ . .+... .+.
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~ 102 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIA 102 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEE
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEE
Confidence 345799999999999999999999999999999986542 222211100 000 0 00000 000
Q ss_pred C--------C--CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 62 D--------Y--PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 62 ~--------~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
+ . +...........+..+.++|.+.+.. . .++++++|++++..+
T Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~---------------------- 156 (398)
T 2xdo_A 103 DEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGK---------------------- 156 (398)
T ss_dssp CSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECS----------------------
T ss_pred CCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECC----------------------
Confidence 0 0 00000011123556666666655432 3 689999999999866
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.++|++.++ .++.||.||.|+|..|.
T Consensus 157 ~~v~v~~~~g-----~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 157 KKWTLTFENK-----PSETADLVILANGGMSK 183 (398)
T ss_dssp SSEEEEETTS-----CCEEESEEEECSCTTCS
T ss_pred CEEEEEECCC-----cEEecCEEEECCCcchh
Confidence 5588887665 47899999999998853
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-10 Score=110.47 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=85.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc---cccc---------cC-------------CcceecCCcc-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---AWIK---------TV-------------ETTMLQTPKQ- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg---~~~~---------~~-------------~~~~l~~~~~- 56 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.+.. .... .. ....+..+..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence 47999999999999999999999999999999765411 0000 00 0000000000
Q ss_pred -ccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 57 -LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 57 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
...+...............+..+.+.|.+.+.+. ++ +++++++|++++..+ +.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~----------------------~~v 141 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATV--EMLFETRIEAVQRDE----------------------RHA 141 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTE--EEECSCCEEEEEECT----------------------TSC
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCc--EEEcCCEEEEEEEcC----------------------Cce
Confidence 0001000000000112356778889999988887 77 899999999998866 456
Q ss_pred --EEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 135 --TVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 135 --~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.|++.++ .++.+|.||+|+|..|
T Consensus 142 ~g~v~~~~g-----~~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 142 IDQVRLNDG-----RVLRPRVVVGADGIAS 166 (399)
T ss_dssp EEEEEETTS-----CEEEEEEEEECCCTTC
T ss_pred EEEEEECCC-----CEEECCEEEECCCCCh
Confidence 7777655 4799999999999885
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=111.56 Aligned_cols=132 Identities=16% Similarity=0.136 Sum_probs=87.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-------------------cccccCCcceecCCcc-------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-------------------AWIKTVETTMLQTPKQ------- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-------------------~~~~~~~~~~l~~~~~------- 56 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.... .|...... .......
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~-~~~~~~~~~~~~~~ 127 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEG-TQVAKGLPFAGIFT 127 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTS-CCBCSBCCBTTBCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhc-CcccCCceeCCccc
Confidence 47999999999999999999999999999999775431 11110000 0000000
Q ss_pred -ccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 57 -LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 57 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
.+.+....... ......++..+...|.+.+.+.++ .++++++|++++.++ +.++
T Consensus 128 ~~~~~~~~~~~~-~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~l~~~~----------------------~~v~ 182 (570)
T 3fmw_A 128 QGLDFGLVDTRH-PYTGLVPQSRTEALLAEHAREAGA--EIPRGHEVTRLRQDA----------------------EAVE 182 (570)
T ss_dssp TCCBGGGSCCSC-CSBBCCCHHHHHHHHHHHHHHHTE--ECCBSCEEEECCBCS----------------------SCEE
T ss_pred ccccccccCCCC-CeeEEeCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CeEE
Confidence 01111111100 012235678888999999888888 899999999998766 5577
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
|++...+ | ..++.+|+||.|+|..|
T Consensus 183 v~~~~~~-G-~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 183 VTVAGPS-G-PYPVRARYGVGCDGGRS 207 (570)
T ss_dssp EEEEETT-E-EEEEEESEEEECSCSSC
T ss_pred EEEEeCC-C-cEEEEeCEEEEcCCCCc
Confidence 7775321 1 25899999999999886
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.3e-10 Score=113.08 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=98.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccccCCcceecC----------Ccc---------ccccCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIKTVETTMLQT----------PKQ---------LYQFSD 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~~~~~~~l~~----------~~~---------~~~~~~ 62 (418)
.+||+|||||++|+++|..|++.|.+|+|||++. .+|... +.+...... ... ...|..
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~--Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~ 105 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMS--CNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRI 105 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS--SSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEE
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccccc--ccccccchhhHHHHHHHHHhccHHHHHhhhcccchhh
Confidence 5899999999999999999999999999999974 333211 111110000 000 001100
Q ss_pred CCCCCC---C-CCCCCChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 63 YPWPDS---V-TTDFPDHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 63 ~~~~~~---~-~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+ + ......+..+...+.+.+++ .++ .+ ++++|+++..++ +..+.|.
T Consensus 106 l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV--~I-~~~~V~~L~~e~---------------------g~V~GV~ 161 (651)
T 3ces_A 106 LNASKGPAVRATRAQADRVLYRQAVRTALENQPNL--MI-FQQAVEDLIVEN---------------------DRVVGAV 161 (651)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EECCEEEEEESS---------------------SBEEEEE
T ss_pred hhcccCcccccchhhCCHHHHHHHHHHHHHhCCCC--EE-EEEEEEEEEecC---------------------CEEEEEE
Confidence 000000 0 00112345778888888887 577 66 678999998755 2334566
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
+.++ .++.||.||+|||.++ ..+.++ |...+ ...+ +| |.+|++
T Consensus 162 t~dG-----~~I~Ad~VVLATGt~s---~~~~i~---G~~~~----------------------~~gr---iG-g~~a~e 204 (651)
T 3ces_A 162 TQMG-----LKFRAKAVVLTVGTFL---DGKIHI---GLDNY----------------------SGGR---AG-DPPSIP 204 (651)
T ss_dssp ETTS-----EEEEEEEEEECCSTTT---CCEEEC---C---------------------------------------CCH
T ss_pred ECCC-----CEEECCEEEEcCCCCc---cCcccc---CcccC----------------------CCCC---cc-chhhhH
Confidence 6554 5799999999999763 333344 44321 0112 56 788999
Q ss_pred HHHHHhhhcCCCCCeEEEEe
Q 014821 218 IAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r 237 (418)
++..|...|.. |+.+..
T Consensus 205 LA~~L~~lG~~---v~~~~t 221 (651)
T 3ces_A 205 LSRRLRELPLR---VGRLKT 221 (651)
T ss_dssp HHHHHHTTTCC---EEEECC
T ss_pred HHHHHHhcCCe---EEEecC
Confidence 99999888765 877753
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=109.92 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=89.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc------------cC---CcceecCCccccccCCCCC-
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK------------TV---ETTMLQTPKQLYQFSDYPW- 65 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~------------~~---~~~~l~~~~~~~~~~~~~~- 65 (418)
+++||+|||||++|+++|..|+++|++++|||+.+.++..-+. .. +.+.-..+.....|....+
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 89 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID 89 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence 4689999999999999999999999999999998765321100 00 0000000111111111000
Q ss_pred ----CCCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 66 ----PDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 66 ----~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
.... .....++..+.+.|.+.+.+.++ .++++++|++++.++ +.++|++.+
T Consensus 90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~v~v~~~~ 145 (500)
T 2qa1_A 90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGA--DIRRGHEVLSLTDDG----------------------AGVTVEVRG 145 (500)
T ss_dssp GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTC--EEEETCEEEEEEEET----------------------TEEEEEEEE
T ss_pred cccCCCCCCceeecCHHHHHHHHHHHHHHCCC--EEECCcEEEEEEEcC----------------------CeEEEEEEc
Confidence 0000 01223567888899999988888 899999999999876 457777776
Q ss_pred CCCCceeEEEeCEEEEeeccCC
Q 014821 141 AKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+. + ..++++|+||.|+|..|
T Consensus 146 ~~-g-~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 146 PE-G-KHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp TT-E-EEEEEESEEEECCCTTC
T ss_pred CC-C-CEEEEeCEEEECCCcch
Confidence 52 2 45899999999999986
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=109.81 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=86.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------------------cCCc------ceecC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------------------TVET------TMLQT 53 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------------------~~~~------~~l~~ 53 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.++...+. ..+. ..+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 479999999999999999999999999999998765421110 0000 00000
Q ss_pred Ccc--ccccCCCCC--------CCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCC
Q 014821 54 PKQ--LYQFSDYPW--------PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNG 123 (418)
Q Consensus 54 ~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~ 123 (418)
... ...+. ++. .........++..+.++|.+.+.+. ++++++|++++.++
T Consensus 106 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~-------------- 165 (549)
T 2r0c_A 106 VGGHEVYRIP-LGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD-------------- 165 (549)
T ss_dssp BTSCEEEEEC-CCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS--------------
T ss_pred CCCceeEeec-ccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC--------------
Confidence 000 00010 000 0000112245667778888877664 78899999998876
Q ss_pred CCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 124 NGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 124 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+++++.+..+|...++.||+||.|+|..|
T Consensus 166 --------~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 166 --------DHVRATITDLRTGATRAVHARYLVACDGASS 196 (549)
T ss_dssp --------SCEEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred --------CEEEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence 5577887774445557899999999999986
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-10 Score=114.27 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=87.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcc-eecCCcccc-ccCCCCCCCCCCCCCCChhHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETT-MLQTPKQLY-QFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.+||+|||||++|+++|..|++.|++|+|||+.+.+|+.... ..+.. ..-...... ....+... .....++..+
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~~l 168 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTG---TLDHISIRQL 168 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCT---TCCEEEHHHH
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccccccccc---ccccCCHHHH
Confidence 579999999999999999999999999999998877643111 00000 000000000 00001000 1112345788
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.++|.+.+++.++ .++++++|++++..+ + .++.+.|.+.+..+|...++.+|+||+|+|
T Consensus 169 ~~~L~~~~~~~gv--~v~~~~~v~~i~~~~--~-----------------~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G 227 (497)
T 2bry_A 169 QLLLLKVALLLGV--EIHWGVKFTGLQPPP--R-----------------KGSGWRAQLQPNPPAQLASYEFDVLISAAG 227 (497)
T ss_dssp HHHHHHHHHHTTC--EEEESCEEEEEECCC--S-----------------TTCCBEEEEESCCCHHHHTCCBSEEEECCC
T ss_pred HHHHHHHHHhCCC--EEEeCCEEEEEEEec--C-----------------CCCEEEEEEEECCCCCEEEEEcCEEEECCC
Confidence 8889888888888 899999999998642 0 023577877432123234689999999999
Q ss_pred cCC
Q 014821 160 RFS 162 (418)
Q Consensus 160 ~~~ 162 (418)
..|
T Consensus 228 ~~S 230 (497)
T 2bry_A 228 GKF 230 (497)
T ss_dssp TTC
T ss_pred CCc
Confidence 874
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=109.76 Aligned_cols=136 Identities=15% Similarity=0.260 Sum_probs=86.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC----CCccccc-cCC------cce--e---cCCcc---c------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD----IGGAWIK-TVE------TTM--L---QTPKQ---L------ 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~----~gg~~~~-~~~------~~~--l---~~~~~---~------ 57 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+. .|..+.. ... ++. + ..+.. .
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 47999999999999999999999999999999862 2221111 000 000 0 00000 0
Q ss_pred -----cccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 58 -----YQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 58 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
+.+...+...........+..+...|.+.+.+.++ +++++++|+++...+ +.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~~~~V~~v~~~~---------------------~~ 143 (512)
T 3e1t_A 87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGV--DVRERHEVIDVLFEG---------------------ER 143 (512)
T ss_dssp SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEET---------------------TE
T ss_pred ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEEC---------------------CE
Confidence 01110000000012235678889999999988888 899999999999865 12
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...|.+... +|...++.+|.||.|+|..|
T Consensus 144 v~gv~~~~~-dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 144 AVGVRYRNT-EGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp EEEEEEECS-SSCEEEEEEEEEEECCCTTC
T ss_pred EEEEEEEeC-CCCEEEEEcCEEEECCCcch
Confidence 122444432 24446899999999999885
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=105.89 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=82.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Cccccc---------cCC--cceecCCccccccCCC-C
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGAWIK---------TVE--TTMLQTPKQLYQFSDY-P 64 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~~~~---------~~~--~~~l~~~~~~~~~~~~-~ 64 (418)
|..+||+|||||++|+++|..|+++|++|+|||+.+.. |..+.. ... ......+...+.+.+. .
T Consensus 3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 82 (397)
T 2vou_A 3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALT 82 (397)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTT
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCC
Confidence 34689999999999999999999999999999997653 111100 000 0000011111111110 0
Q ss_pred ---CCC-CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 65 ---WPD-SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 65 ---~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
... ........+..+.+.|.+.+ .+. .++++++|++++..+ +.++|++.+
T Consensus 83 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~--~i~~~~~v~~i~~~~----------------------~~v~v~~~~ 136 (397)
T 2vou_A 83 GERVGSVPADWRFTSYDSIYGGLYELF--GPE--RYHTSKCLVGLSQDS----------------------ETVQMRFSD 136 (397)
T ss_dssp CCEEEEEECCCCEEEHHHHHHHHHHHH--CST--TEETTCCEEEEEECS----------------------SCEEEEETT
T ss_pred CCccccccCcccccCHHHHHHHHHHhC--CCc--EEEcCCEEEEEEecC----------------------CEEEEEECC
Confidence 000 00011233456666666554 256 799999999998876 558888776
Q ss_pred CCCCceeEEEeCEEEEeeccCC
Q 014821 141 AKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+ .++.+|.||.|+|..|
T Consensus 137 g-----~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 137 G-----TKAEANWVIGADGGAS 153 (397)
T ss_dssp S-----CEEEESEEEECCCTTC
T ss_pred C-----CEEECCEEEECCCcch
Confidence 5 4799999999999885
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=108.73 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=89.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc------------c---CCcceecCCccccccCCCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK------------T---VETTMLQTPKQLYQFSDYP--- 64 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~------------~---~~~~~l~~~~~~~~~~~~~--- 64 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.++...+. . .+.+.-..+.....|....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 579999999999999999999999999999998755321100 0 0000000011111111100
Q ss_pred --CCCCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 65 --WPDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 65 --~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
..... .....++..+.+.|.+.+.+.+. .++++++|++++.++ +.++|++.++
T Consensus 92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~v~v~~~~~ 147 (499)
T 2qa2_A 92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGA--ELLRGHTVRALTDEG----------------------DHVVVEVEGP 147 (499)
T ss_dssp GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEEECS----------------------SCEEEEEECS
T ss_pred ccCCCCCCceEecCHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeC----------------------CEEEEEEEcC
Confidence 00000 01223577888999999888888 899999999999876 4577877765
Q ss_pred CCCceeEEEeCEEEEeeccCC
Q 014821 142 KNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~ 162 (418)
. + ..++.+|+||.|+|..|
T Consensus 148 ~-g-~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 148 D-G-PRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp S-C-EEEEEEEEEEECCCTTC
T ss_pred C-C-cEEEEeCEEEEccCccc
Confidence 3 3 46899999999999986
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=110.83 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=86.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC--Cccccc------cCCcceecCC--------ccccc-cCCCC-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI--GGAWIK------TVETTMLQTP--------KQLYQ-FSDYP- 64 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~--gg~~~~------~~~~~~l~~~--------~~~~~-~~~~~- 64 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.. |..+.. .+..+.+..+ ...+. +....
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ 85 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence 489999999999999999999999999999997643 211110 0000000000 00000 00000
Q ss_pred --CCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-EEEecC
Q 014821 65 --WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDA 141 (418)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 141 (418)
+.........++..+.+.|.+.+.+.++ .++++++|+++..++ +... |.+.+.
T Consensus 86 ~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~----------------------~~v~gv~~~~~ 141 (453)
T 3atr_A 86 TVWTVNGEGFELNAPLYNQRVLKEAQDRGV--EIWDLTTAMKPIFED----------------------GYVKGAVLFNR 141 (453)
T ss_dssp CEEEEEEEEEEECHHHHHHHHHHHHHHTTC--EEESSEEEEEEEEET----------------------TEEEEEEEEET
T ss_pred eEEeECCCcEEEcHHHHHHHHHHHHHHcCC--EEEeCcEEEEEEEEC----------------------CEEEEEEEEEc
Confidence 0000001224567888889888888888 899999999998765 3332 555432
Q ss_pred CCCceeEEEeCEEEEeeccCCCC
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
.+|...++.||.||.|+|..|..
T Consensus 142 ~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 142 RTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp TTTEEEEEECSEEEECCGGGCTT
T ss_pred CCCceEEEEcCEEEECcCCchhh
Confidence 12444589999999999998643
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=104.09 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
....+...+.+.+++.|. +++++++|++++.++ ++.+.|.+.++ ...++.||.|
T Consensus 148 ~~~~~~~~l~~~~~~~Gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g---~~~~~~a~~V 201 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGA--QLVFHTPLIAGRVRP---------------------EGGFELDFGGA---EPMTLSCRVL 201 (369)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEECT---------------------TSSEEEEECTT---SCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEcC---------------------CceEEEEECCC---ceeEEEeCEE
Confidence 345777888888888898 899999999999876 23477766543 3358999999
Q ss_pred EEeeccCC
Q 014821 155 ILCVGRFS 162 (418)
Q Consensus 155 IlAtG~~~ 162 (418)
|+|+|.++
T Consensus 202 V~A~G~~s 209 (369)
T 3dme_A 202 INAAGLHA 209 (369)
T ss_dssp EECCGGGH
T ss_pred EECCCcch
Confidence 99999874
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-10 Score=110.41 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=86.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcc----eec--------CC--ccc-----ccc---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETT----MLQ--------TP--KQL-----YQF--- 60 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~----~l~--------~~--~~~-----~~~--- 60 (418)
.+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.....-.+. ... .+ ... ..+
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 37999999999999999999999999999999887765322100000 000 00 000 000
Q ss_pred --------CCCCCCCCC-CCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 61 --------SDYPWPDSV-TTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 61 --------~~~~~~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
...++.... ...|+ ....+.+.|.+.+++.++ +++++++|+++...+
T Consensus 106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV--~i~~~~~V~~i~~~~------------------- 164 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYEN------------------- 164 (447)
T ss_dssp HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEET-------------------
T ss_pred HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEecC-------------------
Confidence 000110000 01122 356788888888888888 899999999998765
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+..+.|.+.++ .++.||.||+|+|..+
T Consensus 165 --~~v~~V~~~~G-----~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 165 --GQTKAVILQTG-----EVLETNHVVIAVGGKS 191 (447)
T ss_dssp --TEEEEEEETTC-----CEEECSCEEECCCCSS
T ss_pred --CcEEEEEECCC-----CEEECCEEEECCCCCc
Confidence 22377777654 3699999999999883
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-09 Score=104.26 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhcCcccceEeee---EEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-EEEecCCCCceeEEEe
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNR---KVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDAKNHSTEVHQV 151 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~i~~ 151 (418)
...+...+.+.+.+.|+ ++++++ +|+++...+ +.+. |.+.++ .++.|
T Consensus 160 ~~~~~~~L~~~a~~~Gv--~i~~~t~~~~V~~i~~~~----------------------~~v~gV~t~~G-----~~i~A 210 (438)
T 3dje_A 160 ARNALVAAAREAQRMGV--KFVTGTPQGRVVTLIFEN----------------------NDVKGAVTADG-----KIWRA 210 (438)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESTTTTCEEEEEEET----------------------TEEEEEEETTT-----EEEEC
T ss_pred HHHHHHHHHHHHHhcCC--EEEeCCcCceEEEEEecC----------------------CeEEEEEECCC-----CEEEC
Confidence 35777888888888898 899999 999998866 4566 777665 58999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
|.||+|+|.++
T Consensus 211 d~VV~AtG~~s 221 (438)
T 3dje_A 211 ERTFLCAGASA 221 (438)
T ss_dssp SEEEECCGGGG
T ss_pred CEEEECCCCCh
Confidence 99999999984
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-09 Score=105.29 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=86.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc-cc---cCCcceecC-----------------------
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-IK---TVETTMLQT----------------------- 53 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~-~~---~~~~~~l~~----------------------- 53 (418)
|+.+||+|||||++|+++|+.|+++|.+|+|+|+.+..+|.. .. ..++.+...
T Consensus 1 M~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 80 (501)
T 2qcu_A 1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPH 80 (501)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCc
Confidence 788999999999999999999999999999999975332221 11 011111000
Q ss_pred ---------Cccc--------------ccc-CCCCCCCCC-----C--C--------------CCCChhHHHHHHHHHHH
Q 014821 54 ---------PKQL--------------YQF-SDYPWPDSV-----T--T--------------DFPDHNQVLDYIQSYAS 88 (418)
Q Consensus 54 ---------~~~~--------------~~~-~~~~~~~~~-----~--~--------------~~~~~~~~~~~l~~~~~ 88 (418)
+... +.. ....+.... . + .+.....+...+...+.
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~ 160 (501)
T 2qcu_A 81 IAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV 160 (501)
T ss_dssp TEEEEEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred cccccCeEeccCcccchHHHHHHHHHHHHhcCCcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHH
Confidence 0000 000 000000000 0 0 01134567777777888
Q ss_pred hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 89 HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 89 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.|. .+.++++|+++..++ +.|.|.+.+..+|...++.+|.||+|+|.++
T Consensus 161 ~~Gv--~i~~~~~V~~l~~~~----------------------~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 161 RKGG--EVLTRTRATSARREN----------------------GLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HTTC--EEECSEEEEEEEEET----------------------TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HcCC--EEEcCcEEEEEEEeC----------------------CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 8898 899999999998865 4577887653345556899999999999874
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.7e-09 Score=106.75 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=87.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceec------------CCcc--------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQ------------TPKQ-------------- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~------------~~~~-------------- 56 (418)
.+||+|||||++|+++|..|++.|.+|+|||+.+..||.....-.+.... ++..
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 57999999999999999999999999999999988876533211111000 0000
Q ss_pred ----------------ccccCCCCCC-----CCC--CC------CCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 57 ----------------LYQFSDYPWP-----DSV--TT------DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 57 ----------------~~~~~~~~~~-----~~~--~~------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
++.-...++. ... .. .......+...|.+.+.+.++ .++++++|+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv--~i~~~~~v~~l~~ 283 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNI--DLRMNTRGIEVLK 283 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEEE
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCC--EEEeCCEeeEeEE
Confidence 0000011111 000 00 012346788888888888898 8999999999987
Q ss_pred cCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ + +..+-|.+.+. ++...++.+|.||+|||.++
T Consensus 284 ~~--~------------------g~v~Gv~~~~~-~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 284 DD--K------------------GTVKGILVKGM-YKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp CT--T------------------SCEEEEEEEET-TTEEEEEECSEEEECCCCCT
T ss_pred cC--C------------------CeEEEEEEEeC-CCcEEEEECCeEEEeCCCcc
Confidence 54 0 12233555431 24456899999999999874
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=106.76 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=83.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC------Ccc--ccc------cCC---cce-ecCCccccccCC--
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GGA--WIK------TVE---TTM-LQTPKQLYQFSD-- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~------gg~--~~~------~~~---~~~-l~~~~~~~~~~~-- 62 (418)
++||+|||||++|+++|..|++.|++|+|||+.+.. +.. +.. ... .+. ...+...+.+..
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 81 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG 81 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence 379999999999999999999999999999997631 111 100 000 000 000000011100
Q ss_pred ----CCCC---CCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 63 ----YPWP---DSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 63 ----~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
..+. ........++..+.+.|.+.+.+.+. .++++++|++++..+ ++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~i~~~~~v~~i~~~~---------------------~~~~~ 138 (394)
T 1k0i_A 82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDLQ---------------------GERPY 138 (394)
T ss_dssp EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECTT---------------------SSSCE
T ss_pred ceEEeccccccCCCceEEechHHHHHHHHHHHHhcCC--eEEeceeEEEEEEec---------------------CCceE
Confidence 0000 00011122456777778877777787 899999999998754 23467
Q ss_pred EEE-ecCCCCceeEEEeCEEEEeeccCCC
Q 014821 136 VAV-EDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 136 v~~-~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
|++ .+ |...++.+|.||.|+|..|.
T Consensus 139 v~~~~~---g~~~~~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 139 VTFERD---GERLRLDCDYIAGCDGFHGI 164 (394)
T ss_dssp EEEEET---TEEEEEECSEEEECCCTTCS
T ss_pred EEEecC---CcEEEEEeCEEEECCCCCcH
Confidence 776 43 33347999999999998853
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7e-09 Score=106.18 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=86.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC------CCceEEEeeCCCCCccccc-----------cCCcce-----ec--CCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK-----------TVETTM-----LQ--TPKQLYQ 59 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~------~~~v~iie~~~~~gg~~~~-----------~~~~~~-----l~--~~~~~~~ 59 (418)
+||+|||||++|+++|..|++. |++|+|||+.+.+|+.... ..+... +. .....+.
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 7999999999999999999998 9999999998877643111 000000 00 0000011
Q ss_pred c-C-----CCC-CCC----CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 60 F-S-----DYP-WPD----SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 60 ~-~-----~~~-~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
+ . .++ ++. .......++..+.++|.+.+++.++ .++++++|+++..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~l~~~~------------------- 174 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHE------------------- 174 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECT-------------------
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcC-------------------
Confidence 1 0 011 010 0012234677888999999988898 899999999998865
Q ss_pred CCCCce-EEEEec---CCCCce-------eEEEeCEEEEeeccCC
Q 014821 129 GSRGKW-TVAVED---AKNHST-------EVHQVDFVILCVGRFS 162 (418)
Q Consensus 129 ~~~~~~-~v~~~~---~~~~~~-------~~i~~d~vIlAtG~~~ 162 (418)
++.. .|.+.+ ..+|.. .++.+|+||+|+|..|
T Consensus 175 --~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 175 --DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp --TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred --CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence 1222 255542 012321 5799999999999885
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.6e-09 Score=106.42 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
...+...+...+.+.|. .+.++++|+++...+ +..+.|.+.+..++...++.+|.||
T Consensus 169 ~~~l~~~L~~~a~~~G~--~i~~~~~V~~l~~~~---------------------g~v~gV~~~d~~tg~~~~i~A~~VV 225 (561)
T 3da1_A 169 DARLTLEIMKEAVARGA--VALNYMKVESFIYDQ---------------------GKVVGVVAKDRLTDTTHTIYAKKVV 225 (561)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESEEEEEEEEET---------------------TEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------------CeEEEEEEEEcCCCceEEEECCEEE
Confidence 45566677777788898 899999999999876 2346688877555666789999999
Q ss_pred EeeccCC
Q 014821 156 LCVGRFS 162 (418)
Q Consensus 156 lAtG~~~ 162 (418)
+|+|.++
T Consensus 226 ~AaG~~s 232 (561)
T 3da1_A 226 NAAGPWV 232 (561)
T ss_dssp ECCGGGH
T ss_pred ECCCcch
Confidence 9999874
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=103.80 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
....+...+.+.+.+.|. .++++++|+++...+ +.|.|.+.++ ++.||.|
T Consensus 152 ~~~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------~~~~V~t~~g------~i~a~~V 201 (381)
T 3nyc_A 152 DTDALHQGYLRGIRRNQG--QVLCNHEALEIRRVD----------------------GAWEVRCDAG------SYRAAVL 201 (381)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEESSCCCCEEEEET----------------------TEEEEECSSE------EEEESEE
T ss_pred CHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEEeC----------------------CeEEEEeCCC------EEEcCEE
Confidence 346777788888888898 899999999999876 4477766543 7999999
Q ss_pred EEeeccCC
Q 014821 155 ILCVGRFS 162 (418)
Q Consensus 155 IlAtG~~~ 162 (418)
|+|+|.++
T Consensus 202 V~A~G~~s 209 (381)
T 3nyc_A 202 VNAAGAWC 209 (381)
T ss_dssp EECCGGGH
T ss_pred EECCChhH
Confidence 99999874
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-09 Score=105.24 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=86.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCccee------------cCCcc--------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTML------------QTPKQ-------------- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l------------~~~~~-------------- 56 (418)
.+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.....-.+... .++..
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~ 200 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 200 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 4799999999999999999999999999999998776532221100000 00000
Q ss_pred ----------------ccccCCCCCC-----CCC--------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 57 ----------------LYQFSDYPWP-----DSV--------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 57 ----------------~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
++.-...++. ... .........+...|.+.+.+.++ .++++++|+++..
T Consensus 201 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv--~i~~~~~v~~l~~ 278 (566)
T 1qo8_A 201 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGI--DTRLNSRVVKLVV 278 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTC--CEECSEEEEEEEE
T ss_pred HHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEE
Confidence 0000011110 000 00112356788888888888898 8999999999986
Q ss_pred cCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ ++..+-|.+.+ .++...++.+|.||+|||.++
T Consensus 279 ~~--------------------~g~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 279 ND--------------------DHSVVGAVVHG-KHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp CT--------------------TSBEEEEEEEE-TTTEEEEEEEEEEEECCCCCT
T ss_pred CC--------------------CCcEEEEEEEe-CCCcEEEEEcCEEEEecCCcc
Confidence 53 01123355543 124445799999999999874
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=111.49 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=102.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccccCCcceecC-----------Cc--------cccccCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIKTVETTMLQT-----------PK--------QLYQFSD 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~~~~~~~l~~-----------~~--------~~~~~~~ 62 (418)
.+||+|||||++|+++|..|++.|.+|+|||++. .+|.. .+.+...... .. ....|..
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~--~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~ 104 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQM--SCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM 104 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC--CSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCc--CccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence 4899999999999999999999999999999974 34421 0111100000 00 0001100
Q ss_pred CCCCCC---C-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 63 YPWPDS---V-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 63 ~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+ + ......+..+...+.+.++++ ++ .+ ++++|+++...+ +..+.|.
T Consensus 105 l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GV--eI-~~~~Vt~L~~e~---------------------g~V~GV~ 160 (637)
T 2zxi_A 105 LNTRKGKAVQSPRAQADKKRYREYMKKVCENQENL--YI-KQEEVVDIIVKN---------------------NQVVGVR 160 (637)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EESCEEEEEESS---------------------SBEEEEE
T ss_pred cccccCccccchhhhCCHHHHHHHHHHHHHhCCCC--EE-EEeEEEEEEecC---------------------CEEEEEE
Confidence 000000 0 001124567888888888874 77 66 678999998765 2234466
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
+.++ .++.||.||+|||.+ +..+.++ |...+ . ..+ + |+.+|++
T Consensus 161 t~dG-----~~i~AdaVVLATG~~---s~~~~~~---G~~~~---------------------~-~Gr---~-G~~~A~~ 203 (637)
T 2zxi_A 161 TNLG-----VEYKTKAVVVTTGTF---LNGVIYI---GDKMI---------------------P-GGR---L-GEPRSEG 203 (637)
T ss_dssp ETTS-----CEEECSEEEECCTTC---BTCEEEE---TTEEE---------------------E-CSB---T-TBCCBCT
T ss_pred ECCC-----cEEEeCEEEEccCCC---ccCceec---cceec---------------------C-CCC---C-CchhHHH
Confidence 6555 579999999999976 3333333 43321 0 111 2 3678899
Q ss_pred HHHHHhhhcCCCCCeEEEEe
Q 014821 218 IAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r 237 (418)
++..|...|.. +..+.+
T Consensus 204 la~~L~~lG~~---v~~l~t 220 (637)
T 2zxi_A 204 LSDFYRRFDFP---LIRFKT 220 (637)
T ss_dssp HHHHHHHTTCC---CEEEEE
T ss_pred HHHHHHhcCCc---eEEecC
Confidence 99999888765 666654
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.3e-09 Score=99.81 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||||++|+++|+.|+++|.+|+|||+.. ++
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~-~~ 40 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF-IG 40 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-TT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC-CC
Confidence 5899999999999999999999999999999974 44
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.6e-09 Score=100.10 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
++||+|||||++|+++|+.|+++|.+|+|||+....
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~ 37 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP 37 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 489999999999999999999999999999997644
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-09 Score=101.24 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=33.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
++||+|||||++|+++|+.|+++|.+|+|||+....
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~ 52 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG 52 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999997543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.9e-09 Score=107.44 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=85.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc--cccc---cCCcceecC-------------------------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG--AWIK---TVETTMLQT------------------------- 53 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg--~~~~---~~~~~~l~~------------------------- 53 (418)
+||+|||||++|+++|+.|+++|.+|+|||+++.+|+ ++.. .++......
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKF 352 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 7999999999999999999999999999999765552 1211 111100000
Q ss_pred ---Cccccc-------------cCCCCCCCC-------------------C------CCCCCChhHHHHHHHHHHHhcCc
Q 014821 54 ---PKQLYQ-------------FSDYPWPDS-------------------V------TTDFPDHNQVLDYIQSYASHFDL 92 (418)
Q Consensus 54 ---~~~~~~-------------~~~~~~~~~-------------------~------~~~~~~~~~~~~~l~~~~~~~~~ 92 (418)
....+. +....++.. . .........+...+.+.+.+.|+
T Consensus 353 ~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv 432 (676)
T 3ps9_A 353 DHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGL 432 (676)
T ss_dssp CEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHHTTC
T ss_pred CcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHhCCC
Confidence 000000 000001100 0 01112345677778888888898
Q ss_pred ccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 93 RKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 93 ~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++++++|+++...+ +.|.|.+.++ .++.+|.||+|+|.++
T Consensus 433 --~i~~~t~V~~l~~~~----------------------~~v~V~t~~G-----~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 433 --QIYYQYQLQNFSRKD----------------------DCWLLNFAGD-----QQATHSVVVLANGHQI 473 (676)
T ss_dssp --EEEESCCEEEEEEET----------------------TEEEEEETTS-----CEEEESEEEECCGGGG
T ss_pred --EEEeCCeeeEEEEeC----------------------CeEEEEECCC-----CEEECCEEEECCCcch
Confidence 899999999999876 4577777655 3699999999999874
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=105.21 Aligned_cols=58 Identities=10% Similarity=0.234 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee-EEEeCEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE-VHQVDFV 154 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~i~~d~v 154 (418)
...+...+.+.+.+.|+ .++++++|+++...+ +.|.|.+.++ . ++.+|.|
T Consensus 411 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~l~~~~----------------------~~v~V~t~~G-----~~~i~Ad~V 461 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGM--TCHYQHELQRLKRID----------------------SQWQLTFGQS-----QAAKHHATV 461 (689)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESCCEEEEEECS----------------------SSEEEEEC-C-----CCCEEESEE
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCeEeEEEEeC----------------------CeEEEEeCCC-----cEEEECCEE
Confidence 45677778888888898 899999999999876 4587777654 3 6899999
Q ss_pred EEeeccCC
Q 014821 155 ILCVGRFS 162 (418)
Q Consensus 155 IlAtG~~~ 162 (418)
|+|+|.++
T Consensus 462 VlAtG~~s 469 (689)
T 3pvc_A 462 ILATGHRL 469 (689)
T ss_dssp EECCGGGT
T ss_pred EECCCcch
Confidence 99999974
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=107.44 Aligned_cols=35 Identities=34% Similarity=0.430 Sum_probs=32.0
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
||+|||||++|+++|..|++.|.+|+|+|+. ..+|
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g 35 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGG 35 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCc
Confidence 7999999999999999999999999999998 4444
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-08 Score=97.99 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=33.4
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
|. .+||+|||||++|+++|+.|+++|.+|+|||+....
T Consensus 1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF 39 (397)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 54 489999999999999999999999999999997644
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=99.02 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CC-CceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KG-FHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~-~~v~iie~~~~~g 39 (418)
.+||+|||||++|+++|..|++ +| .+|+|||++. ++
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~-~~ 58 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW-LA 58 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS-TT
T ss_pred cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC-CC
Confidence 5799999999999999999999 99 9999999977 44
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.5e-09 Score=101.30 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=32.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
++|+|||||++||++|..|+++|++|+|||+.+.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 57999999999999999999999999999997654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=98.80 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=34.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.++||+|||||++|+++|+.|+++|.+|+|||+....+
T Consensus 2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~ 39 (389)
T 2gf3_A 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH 39 (389)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 35899999999999999999999999999999976443
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.5e-08 Score=98.03 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=36.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|++|+++|..|+++|.+|+|||+.+..||.
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~ 79 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 479999999999999999999999999999999877653
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-09 Score=89.82 Aligned_cols=73 Identities=5% Similarity=-0.044 Sum_probs=46.9
Q ss_pred hhhccCcEEEeccCceeEecC----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeee
Q 014821 332 DKVEEGSIILKKSQDFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA 407 (418)
Q Consensus 332 ~~~~~~~v~~~~~~v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
+.+++.+++++.+.+..++.+ .+.+++| + +++|.||+|||..++ +.+.++.++ + .+.+.++..+
T Consensus 64 ~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~-i~ad~vI~A~G~~~~--~~~~~g~~~-------~-~g~i~vd~~~ 131 (180)
T 2ywl_A 64 AHARRYGAEVRPGVVKGVRDMGGVFEVETEEG-V-EKAERLLLCTHKDPT--LPSLLGLTR-------R-GAYIDTDEGG 131 (180)
T ss_dssp HHHHHTTCEEEECCCCEEEECSSSEEEECSSC-E-EEEEEEEECCTTCCH--HHHHHTCCE-------E-TTEECCCTTC
T ss_pred HHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC-E-EEECEEEECCCCCCC--ccccCCCCc-------c-CceEEeCCCC
Confidence 344455577777666666542 2566777 6 999999999999974 222222221 2 4556666666
Q ss_pred eeccCcccc
Q 014821 408 HIYIDTLTY 416 (418)
Q Consensus 408 ~~~~~~~~~ 416 (418)
.++.|+||.
T Consensus 132 ~t~~~~i~a 140 (180)
T 2ywl_A 132 RTSYPRVYA 140 (180)
T ss_dssp BCSSTTEEE
T ss_pred CcCCCCEEE
Confidence 668899885
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-09 Score=97.25 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=63.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc-cccc--cCCcceecCCc-cccccCCCCCCCCCC-CCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG-AWIK--TVETTMLQTPK-QLYQFSDYPWPDSVT-TDFPD 75 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~ 75 (418)
.+||+|||||++|+++|..|+++ |.+|+|||+...+|+ .|.. .+....+..+. .++.-...++..... .....
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 47999999999999999999997 999999999887764 3433 22222221111 000001111111000 00112
Q ss_pred hhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcC
Q 014821 76 HNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 76 ~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~ 109 (418)
..++...|...+.+ .++ .+++++.|+++...+
T Consensus 159 ~~d~~~~L~~~a~~~~gV--~i~~~~~V~dLi~~~ 191 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNV--KLFNATTVEDLITRK 191 (344)
T ss_dssp HHHHHHHHHHHHHTCTTE--EEEETEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCC--EEEeCCEEEEEEecC
Confidence 34556666666666 477 788999999987654
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-08 Score=101.73 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=88.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCCCCCccccc------------cC-------------CcceecCC--
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSDIGGAWIK------------TV-------------ETTMLQTP-- 54 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~~~gg~~~~------------~~-------------~~~~l~~~-- 54 (418)
.+||+|||||++||++|..|++ .|++|+|||+.+.++...+. .. ....+..+
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 111 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP 111 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence 4799999999999999999999 99999999998755321110 00 00000000
Q ss_pred ---ccccccCCCCCC-CC---CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCC
Q 014821 55 ---KQLYQFSDYPWP-DS---VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQP 127 (418)
Q Consensus 55 ---~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (418)
........++.. .. ......++..+.++|.+.+.+++....++++++|++++.++ +.
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~--~~-------------- 175 (639)
T 2dkh_A 112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDH--GA-------------- 175 (639)
T ss_dssp TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECT--TC--------------
T ss_pred CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECC--CC--------------
Confidence 000000000000 00 01122467788899999998886322688999999998764 00
Q ss_pred CCCCCceEEEEecC---CCCceeEEEeCEEEEeeccCC
Q 014821 128 FGSRGKWTVAVEDA---KNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 128 ~~~~~~~~v~~~~~---~~~~~~~i~~d~vIlAtG~~~ 162 (418)
....++|++.+. .+|...++.+|+||.|+|..|
T Consensus 176 --~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 176 --ADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp --SSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred --CcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 012467776641 124556899999999999986
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=97.34 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=86.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCccee------------cCCccc-------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTML------------QTPKQL------------- 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l------------~~~~~~------------- 57 (418)
.+||+|||+|++|+++|..|++.|.+|+|||+.+.+|+.....-.+... .++...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 4699999999999999999999999999999998877643321111100 000000
Q ss_pred -----------------cccCCCCCC-----CCC--C------CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 58 -----------------YQFSDYPWP-----DSV--T------TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 58 -----------------~~~~~~~~~-----~~~--~------~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
+.-...++. ... . ........+...|.+.+.+.++ +++++++|+++..
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv--~i~~~t~v~~l~~ 283 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT--DIRLNSRVVRILE 283 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEEE
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCC--eEEecCEEEEEEE
Confidence 000011111 000 0 0011255788888888888898 8999999999976
Q ss_pred cCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ .+..+-|.+.+ .++...++.+|.||+|||.++
T Consensus 284 ~~--------------------~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 284 DA--------------------SGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp C----------------------CCEEEEEEEE-TTTEEEEEECSEEEECCCCCT
T ss_pred CC--------------------CCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCc
Confidence 43 01223355543 124456799999999999774
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-08 Score=100.11 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-----CCCceEEEeeCCCCCcc------ccc------c-------------CCcceec
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-----KGFHPIVFEARSDIGGA------WIK------T-------------VETTMLQ 52 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-----~~~~v~iie~~~~~gg~------~~~------~-------------~~~~~l~ 52 (418)
.+||+|||||++||++|..|++ .|++++|||+.+..... +.. . .....+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~ 87 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY 87 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence 4799999999999999999999 99999999997643210 000 0 0000000
Q ss_pred CCc---ccc---ccCCCCCC-CCCCCCCCChhHHHHHHHHHHHhcC---cccceEeeeEEEEEEEcC
Q 014821 53 TPK---QLY---QFSDYPWP-DSVTTDFPDHNQVLDYIQSYASHFD---LRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 53 ~~~---~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~~ 109 (418)
.+. ... .+.+.... ........++..+.++|.+.+.+++ + .+.+++++++++.++
T Consensus 88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v--~v~~g~~v~~~~~d~ 152 (665)
T 1pn0_A 88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRI--KVERPLIPEKMEIDS 152 (665)
T ss_dssp EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSS--CEECSEEEEEEEECG
T ss_pred eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCce--EEEeCCEEEEEEecC
Confidence 000 000 00000000 0001122467788889988888876 6 799999999998754
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.5e-08 Score=94.67 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=37.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
+||+|||||++|+++|+.|++.|.+|+|||+++.+||...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 41 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAY 41 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeec
Confidence 7999999999999999999999999999999888888654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-08 Score=100.10 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=79.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccccCCcceec----------C-Cc--------cccccC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIKTVETTMLQ----------T-PK--------QLYQFS 61 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~~~~~~~l~----------~-~~--------~~~~~~ 61 (418)
..+||+|||||++|+++|..|++.|.+|+|+|++. .+|+.+.. +..... . .. ....|.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~--ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~ 97 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCN--PAIGGVAKGQITREIDALGGEMGKAIDATGIQFR 97 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC--SEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccc--cchhhhhHHHHHHHHHhcccHHHHHHHhcCCchh
Confidence 35899999999999999999999999999999974 34442211 110000 0 00 000110
Q ss_pred CCC---CCCCC-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-
Q 014821 62 DYP---WPDSV-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT- 135 (418)
Q Consensus 62 ~~~---~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (418)
... .+..+ ......+..+...+.+.++++ ++ .+ ++++|+++..++ +...
T Consensus 98 ~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV--~I-~~~~V~~L~~d~----------------------g~V~G 152 (641)
T 3cp8_A 98 MLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNI--DL-LQDTVIGVSANS----------------------GKFSS 152 (641)
T ss_dssp EECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EECCEEEEEEET----------------------TEEEE
T ss_pred hcccccCccccchhhhcCHHHHHHHHHHHHHhCCCC--EE-EeeEEEEEEecC----------------------CEEEE
Confidence 000 00000 001234557888888888875 77 56 567899987755 2232
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
|.+.++ .++.||.||+|||.+
T Consensus 153 V~t~~G-----~~i~Ad~VVLATG~~ 173 (641)
T 3cp8_A 153 VTVRSG-----RAIQAKAAILACGTF 173 (641)
T ss_dssp EEETTS-----CEEEEEEEEECCTTC
T ss_pred EEECCC-----cEEEeCEEEECcCCC
Confidence 555544 489999999999976
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=96.16 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=33.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||||++|+++|..|++.|.+|+|||+....
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-08 Score=92.42 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=39.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|+ +||+||||||+||++|..|+++|++|+|||+++.+||.+..
T Consensus 1 Mt-~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 1 MT-VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp -C-CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CC-CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence 54 89999999999999999999999999999999999987665
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.1e-08 Score=97.84 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=32.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~ 36 (418)
..+||+|||||++|+++|..|++ .|++|+|||+..
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 36899999999999999999999 999999999954
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=97.44 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=33.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||||.+|+++|..|++.|.+|+|||+....
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~ 53 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPT 53 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 479999999999999999999999999999997643
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=95.83 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||||++|+++|..|+++|.+|+|||+.+..
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~ 67 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFA 67 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 589999999999999999999999999999997643
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-08 Score=96.64 Aligned_cols=41 Identities=39% Similarity=0.651 Sum_probs=37.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+||+|||||++||++|..|+++|.+|+|+|+++.+||....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence 48999999999999999999999999999999988875443
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=97.97 Aligned_cols=39 Identities=33% Similarity=0.606 Sum_probs=36.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC------CceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG------FHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~------~~v~iie~~~~~gg~ 41 (418)
++||+|||||++||++|..|++.| ++|+|+|+++.+||.
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~ 49 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGK 49 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCce
Confidence 479999999999999999999999 999999999888874
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=100.84 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=33.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~ 37 (418)
+.+||+|||||++|+++|+.|+++|. +|+|||++..
T Consensus 3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL 39 (830)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 36899999999999999999999998 9999999764
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=95.14 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~ 38 (418)
.+||+|||||++|+++|..|++.| .+|+|||+....
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~ 42 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM 42 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence 479999999999999999999999 999999997643
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=96.32 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~ 37 (418)
.+||+|||||++|+++|+.|+++ |++|+|||+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 37999999999999999999999 999999999753
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=95.02 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=33.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||||.+|+++|..|++.|.+|+|||+....
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 579999999999999999999999999999997644
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=94.25 Aligned_cols=38 Identities=34% Similarity=0.411 Sum_probs=34.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDI 38 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~ 38 (418)
|+++||+|||||++|+++|..|+++| .+|+|||+...+
T Consensus 21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~ 59 (448)
T 3axb_A 21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP 59 (448)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence 66789999999999999999999999 999999994333
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=95.58 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=33.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||||++|+++|..|++ |.+|+|||+....++
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g 44 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG 44 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC
Confidence 4799999999999999999999 999999999876543
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=94.72 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 74 PDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
..+..+.++|.+.+.+. |+ .+.++ +|++++..+ .+..+.|.+.++ .++.+|
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv--~i~~~-~V~~i~~~~--------------------~g~~~~v~~~~G-----~~i~ad 242 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGV--RHVED-RVEHVQRDA--------------------NGNIESVRTATG-----RVFDAD 242 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCC--EEEEC-CEEEEEECT--------------------TSCEEEEEETTS-----CEEECS
T ss_pred EcHHHHHHHHHHHHHhcCCc--EEEEC-eEeEEEEcC--------------------CCCEEEEEECCC-----CEEECC
Confidence 45678889999999888 88 88898 999998754 011244555544 479999
Q ss_pred EEEEeeccCC
Q 014821 153 FVILCVGRFS 162 (418)
Q Consensus 153 ~vIlAtG~~~ 162 (418)
.||+|+|..|
T Consensus 243 ~vI~A~G~~S 252 (550)
T 2e4g_A 243 LFVDCSGFRG 252 (550)
T ss_dssp EEEECCGGGC
T ss_pred EEEECCCCch
Confidence 9999999875
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-07 Score=85.82 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=64.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc-cccc--cCCcceecCCc-cccccCCCCCCCC-CCCCCCCh
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG-AWIK--TVETTMLQTPK-QLYQFSDYPWPDS-VTTDFPDH 76 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~ 76 (418)
+||+|||||++|+++|..|++. |.+|+|+|+++.+|+ .|.. .+....+.... .++.-...++... ........
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 5999999999999999999998 999999999988874 4432 22222222111 0111111111110 00001134
Q ss_pred hHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcC
Q 014821 77 NQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 77 ~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~ 109 (418)
.++...+.+.+.+. ++ .++.+++|+++..+.
T Consensus 146 ~~~~~~L~~~a~~~~GV--~i~~~~~V~~Ll~~~ 177 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNV--KLFNATCVEDLVTRP 177 (326)
T ss_dssp HHHHHHHHHHHHTSTTE--EEETTEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCc--EEEecceeeeeeecc
Confidence 56677777766664 77 788889999998753
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-07 Score=89.59 Aligned_cols=40 Identities=33% Similarity=0.519 Sum_probs=36.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
+||+|||||.+||++|..|+++|.+|+|||+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence 5899999999999999999999999999999998887543
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-07 Score=92.14 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC-ceEEEEecCCCCceeEEEeC
Q 014821 75 DHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG-KWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~i~~d 152 (418)
.+..+..+|.+.+.+ .|+ .++++ +|++++..+ ++ ...|.+.++ .++.+|
T Consensus 173 ~r~~l~~~L~~~a~~~~Gv--~i~~~-~v~~i~~~~---------------------~g~~~~v~~~~g-----~~i~ad 223 (526)
T 2pyx_A 173 NAAKFSQLLTEHCTQKLGV--THIRD-HVSQIINNQ---------------------HGDIEKLITKQN-----GEISGQ 223 (526)
T ss_dssp CHHHHHHHHHHHHHHTSCC--EEEEC-CEEEEEECT---------------------TSCEEEEEESSS-----CEEECS
T ss_pred cHHHHHHHHHHHHHhcCCC--EEEEe-EEEEEEecC---------------------CCcEEEEEECCC-----CEEEcC
Confidence 567888899999888 788 78887 699998764 11 234555443 259999
Q ss_pred EEEEeeccCCCC
Q 014821 153 FVILCVGRFSDV 164 (418)
Q Consensus 153 ~vIlAtG~~~~~ 164 (418)
.||.|+|..|..
T Consensus 224 ~vV~AdG~~S~~ 235 (526)
T 2pyx_A 224 LFIDCTGAKSLL 235 (526)
T ss_dssp EEEECSGGGCCC
T ss_pred EEEECCCcchHH
Confidence 999999998533
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-07 Score=90.23 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=78.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ...++.+.+
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~l 216 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-------------------------------Q--GDPETAALL 216 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-------------------------------c--cCHHHHHHH
Confidence 6899999999999999999999999999999763310 0 124677788
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.++ ++.++++|.+++... +...|.+.+..+|...++.||.||+|+|..
T Consensus 217 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~ 270 (464)
T 2eq6_A 217 RRALEKEGI--RVRTKTKAVGYEKKK----------------------DGLHVRLEPAEGGEGEEVVVDKVLVAVGRK 270 (464)
T ss_dssp HHHHHHTTC--EEECSEEEEEEEEET----------------------TEEEEEEEETTCCSCEEEEESEEEECSCEE
T ss_pred HHHHHhcCC--EEEcCCEEEEEEEeC----------------------CEEEEEEeecCCCceeEEEcCEEEECCCcc
Confidence 888888899 899999999998765 345566552111333589999999999965
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-07 Score=90.57 Aligned_cols=102 Identities=25% Similarity=0.369 Sum_probs=79.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+... ...++.++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------~~~~~~~~ 229 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS---------------------------------MDGEVAKA 229 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS---------------------------------SCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc---------------------------------cCHHHHHH
Confidence 368999999999999999999999999999997633210 11467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEE--cCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEF--EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+..++.++ ++.++++|.+++. .. +...+.+.+..++...++.||.||+|+|.
T Consensus 230 l~~~l~~~gv--~i~~~~~v~~i~~~~~~----------------------~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 285 (478)
T 1v59_A 230 TQKFLKKQGL--DFKLSTKVISAKRNDDK----------------------NVVEIVVEDTKTNKQENLEAEVLLVAVGR 285 (478)
T ss_dssp HHHHHHHTTC--EEECSEEEEEEEEETTT----------------------TEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEEecCC----------------------CeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence 8888888899 8999999999987 33 34556665322234468999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 286 ~ 286 (478)
T 1v59_A 286 R 286 (478)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=91.46 Aligned_cols=96 Identities=27% Similarity=0.252 Sum_probs=76.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------~~--~~~~~~~~l 214 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-------------------------------PT--MDLEVSRAA 214 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999975321 00 114667777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.++ +++++++|++++... +.+.+.+.++ .++.||.||+|+|..
T Consensus 215 ~~~l~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 215 ERVFKKQGL--TIRTGVRVTAVVPEA----------------------KGARVELEGG-----EVLEADRVLVAVGRR 263 (455)
T ss_dssp HHHHHHHTC--EEECSCCEEEEEEET----------------------TEEEEEETTS-----CEEEESEEEECSCEE
T ss_pred HHHHHHCCC--EEEECCEEEEEEEeC----------------------CEEEEEECCC-----eEEEcCEEEECcCCC
Confidence 888888898 899999999998765 3455555444 579999999999965
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-07 Score=89.49 Aligned_cols=134 Identities=17% Similarity=0.070 Sum_probs=75.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCC-------CCCC--C
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWP-------DSVT--T 71 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~--~ 71 (418)
.++|+|||+|.+|+.+|..|++. +.+|+++++.+.+-..-...+ ...+..|...-.|...+.. .... .
T Consensus 227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (463)
T 3s5w_A 227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPF-VNEVFAPKFTDLIYSREHAERERLLREYHNTNY 305 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHH-HHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTS
T ss_pred CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCcc-chhccChhHHHHHhcCCHHHHHHHHHHhhccCC
Confidence 46899999999999999999998 889999999764311000000 0000000000000000000 0000 0
Q ss_pred CCCChhHHH----HHHHH-HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 72 DFPDHNQVL----DYIQS-YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 72 ~~~~~~~~~----~~l~~-~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
.-.....+. ...++ .....++ .+.++++|++++..+ +.+.|.+.+..+|..
T Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~v--~i~~~~~v~~v~~~~----------------------~~~~v~~~~~~~g~~ 361 (463)
T 3s5w_A 306 SVVDTDLIERIYGVFYRQKVSGIPRH--AFRCMTTVERATATA----------------------QGIELALRDAGSGEL 361 (463)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHCCCCS--EEETTEEEEEEEEET----------------------TEEEEEEEETTTCCE
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCCCe--EEEeCCEEEEEEecC----------------------CEEEEEEEEcCCCCe
Confidence 000111111 11111 1111466 788999999998766 568898887656777
Q ss_pred eEEEeCEEEEeeccC
Q 014821 147 EVHQVDFVILCVGRF 161 (418)
Q Consensus 147 ~~i~~d~vIlAtG~~ 161 (418)
.++.+|.||+|||..
T Consensus 362 ~~~~~D~Vv~AtG~~ 376 (463)
T 3s5w_A 362 SVETYDAVILATGYE 376 (463)
T ss_dssp EEEEESEEEECCCEE
T ss_pred EEEECCEEEEeeCCC
Confidence 789999999999965
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.6e-07 Score=87.17 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=78.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ...++.+.
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------~~-~~~~~~~~ 192 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP-------------------------------GL-LHPAAAKA 192 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------TT-SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh-------------------------------cc-cCHHHHHH
Confidence 47899999999999999999999999999999753311 00 12467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .++++++|.+++... +.+.|.+.++ .++.||.||+|+|..
T Consensus 193 l~~~l~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~d~vv~a~G~~ 242 (384)
T 2v3a_A 193 VQAGLEGLGV--RFHLGPVLASLKKAG----------------------EGLEAHLSDG-----EVIPCDLVVSAVGLR 242 (384)
T ss_dssp HHHHHHTTTC--EEEESCCEEEEEEET----------------------TEEEEEETTS-----CEEEESEEEECSCEE
T ss_pred HHHHHHHcCC--EEEeCCEEEEEEecC----------------------CEEEEEECCC-----CEEECCEEEECcCCC
Confidence 8888888898 899999999998765 3456666555 579999999999965
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-08 Score=96.40 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=61.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC---CccccccCCcce------ec---------CCccccccC--
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI---GGAWIKTVETTM------LQ---------TPKQLYQFS-- 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~---gg~~~~~~~~~~------l~---------~~~~~~~~~-- 61 (418)
+||+|||||++|+++|..|+++ |++|+|||+++.+ |........... +. .+...+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 4899999999999999999998 9999999998765 322111000000 00 000001110
Q ss_pred CCCCCC--CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEE
Q 014821 62 DYPWPD--SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106 (418)
Q Consensus 62 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~ 106 (418)
...+.. ........+..+.+.|.+.+.+.++ .++++++|++++
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~ 125 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGI--AIRFESPLLEHG 125 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTC--EEETTCCCCSGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCC--EEEeCCEeccch
Confidence 000000 0001124678889999999888888 788888876653
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-07 Score=91.12 Aligned_cols=40 Identities=33% Similarity=0.610 Sum_probs=36.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.+||+|||||++||++|..|++.|++|+|+|+++.+||..
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~ 55 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV 55 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence 5799999999999999999999999999999999998743
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=91.80 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=46.8
Q ss_pred CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCE
Q 014821 74 PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDF 153 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~ 153 (418)
..+..+...|.+.+.+.|+ .+.++ +|++++..+ .+..+.|.+.++ .++.+|.
T Consensus 170 ~~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~--------------------~~~~~~v~~~~g-----~~~~ad~ 221 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGV--RHVVD-DVQHVGQDE--------------------RGWISGVHTKQH-----GEISGDL 221 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECT--------------------TSCEEEEEESSS-----CEEECSE
T ss_pred EcHHHHHHHHHHHHHHCCC--EEEEC-eEeEEEEcC--------------------CCCEEEEEECCC-----CEEEcCE
Confidence 3567888899998888888 78888 999998754 011245555544 4799999
Q ss_pred EEEeeccCCC
Q 014821 154 VILCVGRFSD 163 (418)
Q Consensus 154 vIlAtG~~~~ 163 (418)
||.|+|..|.
T Consensus 222 vV~A~G~~S~ 231 (511)
T 2weu_A 222 FVDCTGFRGL 231 (511)
T ss_dssp EEECCGGGCC
T ss_pred EEECCCcchH
Confidence 9999999853
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=88.29 Aligned_cols=106 Identities=24% Similarity=0.289 Sum_probs=82.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~ 244 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-------------------------------G--MDGEVAKQ 244 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS-------------------------------S--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999763311 0 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ .+.++++|.+++..+ +...+.+.+..++...++.+|.||+|+|..
T Consensus 245 l~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~- 299 (491)
T 3urh_A 245 LQRMLTKQGI--DFKLGAKVTGAVKSG----------------------DGAKVTFEPVKGGEATTLDAEVVLIATGRK- 299 (491)
T ss_dssp HHHHHHHTTC--EEECSEEEEEEEEET----------------------TEEEEEEEETTSCCCEEEEESEEEECCCCE-
T ss_pred HHHHHHhCCC--EEEECCeEEEEEEeC----------------------CEEEEEEEecCCCceEEEEcCEEEEeeCCc-
Confidence 8888888899 899999999998766 446677665433445689999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 300 --p~~~ 303 (491)
T 3urh_A 300 --PSTD 303 (491)
T ss_dssp --ECCT
T ss_pred --cCCC
Confidence 5543
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.5e-07 Score=88.19 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=77.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++.+.
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~~--~~~~~~~ 213 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------------------PSF--DPMISET 213 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TTS--CHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh-------------------------------hhh--hHHHHHH
Confidence 3689999999999999999999999999999975331 001 1357777
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.++ +++++++|.+++..+ ++...|.+.++ .++.+|.||+|+|..
T Consensus 214 l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~i~~D~vv~a~G~~ 264 (450)
T 1ges_A 214 LVEVMNAEGP--QLHTNAIPKAVVKNT---------------------DGSLTLELEDG-----RSETVDCLIWAIGRE 264 (450)
T ss_dssp HHHHHHHHSC--EEECSCCEEEEEECT---------------------TSCEEEEETTS-----CEEEESEEEECSCEE
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEEeC---------------------CcEEEEEECCC-----cEEEcCEEEECCCCC
Confidence 8888888898 899999999998754 23356766555 479999999999965
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=87.22 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=77.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . ...++..+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 216 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------------------------------G--FEKQMAAI 216 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999999763310 0 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.++ .+.++++|.+++... +...+.+... +...++.+|.||+|+|..
T Consensus 217 l~~~l~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~--g~~~~~~~D~vv~a~G~~ 269 (455)
T 1ebd_A 217 IKKRLKKKGV--EVVTNALAKGAEERE----------------------DGVTVTYEAN--GETKTIDADYVLVTVGRR 269 (455)
T ss_dssp HHHHHHHTTC--EEEESEEEEEEEEET----------------------TEEEEEEEET--TEEEEEEESEEEECSCEE
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEEeC----------------------CeEEEEEEeC--CceeEEEcCEEEECcCCC
Confidence 8888888899 899999999998765 3345555421 234689999999999965
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=85.27 Aligned_cols=101 Identities=23% Similarity=0.365 Sum_probs=78.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. -..++...+
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 223 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------RK--FDESVINVL 223 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------cc--cchhhHHHH
Confidence 689999999999999999999999999999976331 00 114677788
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeE-EEeCEEEEeeccCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV-HQVDFVILCVGRFS 162 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-i~~d~vIlAtG~~~ 162 (418)
.+..++.|+ ++.++++|.+++... ++...|.+.++ .+ +.||.||+|+|..
T Consensus 224 ~~~l~~~gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~~~~~D~vi~a~G~~- 274 (500)
T 1onf_A 224 ENDMKKNNI--NIVTFADVVEIKKVS---------------------DKNLSIHLSDG-----RIYEHFDHVIYCVGRS- 274 (500)
T ss_dssp HHHHHHTTC--EEECSCCEEEEEESS---------------------TTCEEEEETTS-----CEEEEESEEEECCCBC-
T ss_pred HHHHHhCCC--EEEECCEEEEEEEcC---------------------CceEEEEECCC-----cEEEECCEEEECCCCC-
Confidence 888888899 899999999998754 12356666554 34 9999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 275 --p~~~ 278 (500)
T 1onf_A 275 --PDTE 278 (500)
T ss_dssp --CTTT
T ss_pred --cCCC
Confidence 5543
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=86.74 Aligned_cols=103 Identities=25% Similarity=0.408 Sum_probs=78.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+... .+ ..++..++
T Consensus 179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~~--~~~~~~~l 226 (474)
T 1zmd_A 179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV------------------------------GI--DMEISKNF 226 (474)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS------------------------------SC--CHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc------------------------------cc--CHHHHHHH
Confidence 68999999999999999999999999999997633110 11 14677788
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.|+ ++.++++|.+++... +....+.+.+...+...++.+|.||+|+|..
T Consensus 227 ~~~l~~~Gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~ 281 (474)
T 1zmd_A 227 QRILQKQGF--KFKLNTKVTGATKKS---------------------DGKIDVSIEAASGGKAEVITCDVLLVCIGRR 281 (474)
T ss_dssp HHHHHHTTC--EEECSEEEEEEEECT---------------------TSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred HHHHHHCCC--EEEeCceEEEEEEcC---------------------CceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence 888888899 899999999998765 1225565542212233689999999999965
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.4e-07 Score=88.16 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=75.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+.+|..|++.|.+|+++|+.+.+... . ...++.+.
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~--~~~~~~~~ 196 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV------------------------------Y--LDKEFTDV 196 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------------------T--CCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc------------------------------c--CCHHHHHH
Confidence 479999999999999999999999999999997633110 0 11467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.++ ++.++++|.+++... ..+.+.+ ++ .++.+|.||+|+|..
T Consensus 197 l~~~l~~~gv--~i~~~~~v~~i~~~~----------------------~v~~v~~-~~-----~~i~~d~vi~a~G~~ 245 (447)
T 1nhp_A 197 LTEEMEANNI--TIATGETVERYEGDG----------------------RVQKVVT-DK-----NAYDADLVVVAVGVR 245 (447)
T ss_dssp HHHHHHTTTE--EEEESCCEEEEECSS----------------------BCCEEEE-SS-----CEEECSEEEECSCEE
T ss_pred HHHHHHhCCC--EEEcCCEEEEEEccC----------------------cEEEEEE-CC-----CEEECCEEEECcCCC
Confidence 8888888898 899999999998543 2234544 22 479999999999965
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-07 Score=88.32 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=79.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...++.++
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 223 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-------------------------------T--MDAEIRKQ 223 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-------------------------------c--ccHHHHHH
Confidence 36899999999999999999999999999999763310 0 11467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .+.++++|.+++... +...+.+.+..++...++.+|.||+|+|..
T Consensus 224 l~~~l~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 278 (470)
T 1dxl_A 224 FQRSLEKQGM--KFKLKTKVVGVDTSG----------------------DGVKLTVEPSAGGEQTIIEADVVLVSAGRT 278 (470)
T ss_dssp HHHHHHHSSC--CEECSEEEEEEECSS----------------------SSEEEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred HHHHHHHcCC--EEEeCCEEEEEEEcC----------------------CeEEEEEEecCCCcceEEECCEEEECCCCC
Confidence 8888888899 899999999998654 335566553222334689999999999965
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=87.51 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=76.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++.+.+
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--~~~~~~~l 213 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-------------------------------FQF--DPLLSATL 213 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TTS--CHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-------------------------------ccc--CHHHHHHH
Confidence 689999999999999999999999999999975331 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee-EEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE-VHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~i~~d~vIlAtG~~ 161 (418)
.+..++.++ +++++++|.+++... +...|.+.++ . ++.+|.||+|+|..
T Consensus 214 ~~~l~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~G-----~~~i~~D~vv~a~G~~ 263 (463)
T 2r9z_A 214 AENMHAQGI--ETHLEFAVAALERDA----------------------QGTTLVAQDG-----TRLEGFDSVIWAVGRA 263 (463)
T ss_dssp HHHHHHTTC--EEESSCCEEEEEEET----------------------TEEEEEETTC-----CEEEEESEEEECSCEE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEeC----------------------CeEEEEEeCC-----cEEEEcCEEEECCCCC
Confidence 888888898 899999999998765 3356666554 3 79999999999965
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=84.52 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=78.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .. ...++.++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~------------------------------~~--~~~~~~~~ 199 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA------------------------------RV--AGEALSEF 199 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh------------------------------hh--cCHHHHHH
Confidence 46899999999999999999999999999999763310 00 12577888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.|+ +++++++|.+++..+ +....|.+.++ .++.||.||+|+|..
T Consensus 200 l~~~l~~~GV--~i~~~~~v~~i~~~~---------------------~~v~~v~l~dG-----~~i~aD~Vv~a~G~~ 250 (415)
T 3lxd_A 200 YQAEHRAHGV--DLRTGAAMDCIEGDG---------------------TKVTGVRMQDG-----SVIPADIVIVGIGIV 250 (415)
T ss_dssp HHHHHHHTTC--EEEETCCEEEEEESS---------------------SBEEEEEESSS-----CEEECSEEEECSCCE
T ss_pred HHHHHHhCCC--EEEECCEEEEEEecC---------------------CcEEEEEeCCC-----CEEEcCEEEECCCCc
Confidence 8888888999 899999999998754 12235666666 589999999999954
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=85.50 Aligned_cols=98 Identities=19% Similarity=0.295 Sum_probs=78.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.... ...++.+.
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~--------------------------------~~~~~~~~ 190 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV--------------------------------LGRRIGAW 190 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH--------------------------------HCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh--------------------------------cCHHHHHH
Confidence 4689999999999999999999999999999976332100 01467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.|+ ++.++++|.+++.++ ....|.+.++ .++.||.||+|+|..
T Consensus 191 l~~~l~~~GV--~i~~~~~v~~i~~~~----------------------~~~~v~~~dg-----~~i~aD~Vv~a~G~~ 240 (410)
T 3ef6_A 191 LRGLLTELGV--QVELGTGVVGFSGEG----------------------QLEQVMASDG-----RSFVADSALICVGAE 240 (410)
T ss_dssp HHHHHHHHTC--EEECSCCEEEEECSS----------------------SCCEEEETTS-----CEEECSEEEECSCEE
T ss_pred HHHHHHHCCC--EEEeCCEEEEEeccC----------------------cEEEEEECCC-----CEEEcCEEEEeeCCe
Confidence 8888888899 899999999998654 3345777666 589999999999965
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=84.88 Aligned_cols=100 Identities=22% Similarity=0.205 Sum_probs=77.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++.++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~ 217 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL-------------------------------PN--EDADVSKE 217 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999976331 00 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ ++.++++|.+++... +...+.+.+ ++...++.||.||+|+|..
T Consensus 218 l~~~l~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~--~g~~~~~~~D~vv~a~G~~ 270 (464)
T 2a8x_A 218 IEKQFKKLGV--TILTATKVESIADGG----------------------SQVTVTVTK--DGVAQELKAEKVLQAIGFA 270 (464)
T ss_dssp HHHHHHHHTC--EEECSCEEEEEEECS----------------------SCEEEEEES--SSCEEEEEESEEEECSCEE
T ss_pred HHHHHHHcCC--EEEeCcEEEEEEEcC----------------------CeEEEEEEc--CCceEEEEcCEEEECCCCC
Confidence 8888888899 899999999998755 334555542 1334679999999999965
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-07 Score=86.53 Aligned_cols=42 Identities=38% Similarity=0.603 Sum_probs=39.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~~gg~~~~ 44 (418)
.+||+|||||++||++|+.|.+.|++++|+|++ +.+||.|..
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence 579999999999999999999999999999999 999998776
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=91.24 Aligned_cols=38 Identities=42% Similarity=0.657 Sum_probs=36.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+||
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg 373 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG 373 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence 47999999999999999999999999999999988887
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-06 Score=79.26 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=76.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|.+|+.+|..|++.+.+|+++++.+.+ .....+.+.
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-----------------------------------~~~~~~~~~ 189 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-----------------------------------RAEKILIKR 189 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-----------------------------------CCCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc-----------------------------------ccCHHHHHH
Confidence 368999999999999999999999999999986522 011355666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC-CceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN-HSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.++ ++.+++++.+++.+. +....|.+.+..+ +...++.||.||+|+|..
T Consensus 190 l~~~l~~~gv--~i~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~ 246 (320)
T 1trb_A 190 LMDKVENGNI--ILHTNRTLEEVTGDQ---------------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 246 (320)
T ss_dssp HHHHHHTSSE--EEECSCEEEEEEECS---------------------SSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred HHHhcccCCe--EEEcCceeEEEEcCC---------------------CceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence 7777777888 899999999998754 1223366654322 344689999999999965
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.5e-06 Score=84.39 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=78.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.+
T Consensus 175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~l 221 (492)
T 3ic9_A 175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-------------------------------L--QDEEMKRYA 221 (492)
T ss_dssp SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT-------------------------------C--CCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-------------------------------c--CCHHHHHHH
Confidence 6899999999999999999999999999999763311 0 114677777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++. + .+.++++|.+++..+ +...+.+.+ .+|...++.||.||+|+|..
T Consensus 222 ~~~l~~~-V--~i~~~~~v~~i~~~~----------------------~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~~-- 273 (492)
T 3ic9_A 222 EKTFNEE-F--YFDAKARVISTIEKE----------------------DAVEVIYFD-KSGQKTTESFQYVLAATGRK-- 273 (492)
T ss_dssp HHHHHTT-S--EEETTCEEEEEEECS----------------------SSEEEEEEC-TTCCEEEEEESEEEECSCCE--
T ss_pred HHHHhhC-c--EEEECCEEEEEEEcC----------------------CEEEEEEEe-CCCceEEEECCEEEEeeCCc--
Confidence 7777765 7 789999999998765 345566543 22445689999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 274 -p~~~ 277 (492)
T 3ic9_A 274 -ANVD 277 (492)
T ss_dssp -ESCS
T ss_pred -cCCC
Confidence 5544
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=83.51 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=77.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ..+ ..++.+.+
T Consensus 148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------~~~--d~~~~~~l 195 (452)
T 3oc4_A 148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP------------------------------KYF--DKEMVAEV 195 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------TTC--CHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc------------------------------ccC--CHHHHHHH
Confidence 6899999999999999999999999999999763310 001 14677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.|+ ++.++++|.+++..+ +...|.+.++ ++.||.||+|+|..
T Consensus 196 ~~~l~~~GV--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g------~i~aD~Vv~A~G~~-- 243 (452)
T 3oc4_A 196 QKSLEKQAV--IFHFEETVLGIEETA----------------------NGIVLETSEQ------EISCDSGIFALNLH-- 243 (452)
T ss_dssp HHHHHTTTE--EEEETCCEEEEEECS----------------------SCEEEEESSC------EEEESEEEECSCCB--
T ss_pred HHHHHHcCC--EEEeCCEEEEEEccC----------------------CeEEEEECCC------EEEeCEEEECcCCC--
Confidence 888888899 899999999998654 3344555322 79999999999955
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 244 -p~~~ 247 (452)
T 3oc4_A 244 -PQLA 247 (452)
T ss_dssp -CCCS
T ss_pred -CChH
Confidence 5544
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-06 Score=82.99 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=80.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.. +. ..+ ..++.+.+
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l-------------------------------~~~--d~~~~~~l 233 (483)
T 3dgh_A 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-VL-------------------------------RGF--DQQMAELV 233 (483)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-SS-------------------------------TTS--CHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-CC-------------------------------ccc--CHHHHHHH
Confidence 689999999999999999999999999998842 10 001 14677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.++ .+.++++|.+++... ++...|.+.++.++...++.+|.||+|+|..
T Consensus 234 ~~~l~~~Gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~ 288 (483)
T 3dgh_A 234 AASMEERGI--PFLRKTVPLSVEKQD---------------------DGKLLVKYKNVETGEESEDVYDTVLWAIGRK 288 (483)
T ss_dssp HHHHHHTTC--CEEETEEEEEEEECT---------------------TSCEEEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEcC---------------------CCcEEEEEecCCCCceeEEEcCEEEECcccc
Confidence 888888899 899999999998755 2345677777655566789999999999964
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=83.37 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=78.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|.+.+.+++++++.+.+.. .. ...++.++
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------~~--~~~~~~~~ 189 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA------------------------------RV--VTPEISSY 189 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh------------------------------hc--cCHHHHHH
Confidence 36899999999999999999999999999999753310 00 12467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.|+ ++.++++|.+++..+ +....|.+.++ .++.||.||+|+|..
T Consensus 190 l~~~l~~~GV--~i~~~~~v~~i~~~~---------------------~~v~~V~~~dG-----~~i~aD~Vv~a~G~~ 240 (404)
T 3fg2_P 190 FHDRHSGAGI--RMHYGVRATEIAAEG---------------------DRVTGVVLSDG-----NTLPCDLVVVGVGVI 240 (404)
T ss_dssp HHHHHHHTTC--EEECSCCEEEEEEET---------------------TEEEEEEETTS-----CEEECSEEEECCCEE
T ss_pred HHHHHHhCCc--EEEECCEEEEEEecC---------------------CcEEEEEeCCC-----CEEEcCEEEECcCCc
Confidence 8888888999 899999999998764 12234666665 589999999999965
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=83.79 Aligned_cols=100 Identities=22% Similarity=0.246 Sum_probs=77.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.+
T Consensus 175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~l 221 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-------------------------------T--LDEDVTNAL 221 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T--SCHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-------------------------------c--CCHHHHHHH
Confidence 6899999999999999999999999999999763310 0 114677788
Q ss_pred HHHH-HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.. ++.++ ++.++++|.+++... +...+.+.+. ++...++.||.||+|+|..
T Consensus 222 ~~~l~~~~gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~-~g~~~~i~~D~vv~a~G~~ 275 (468)
T 2qae_A 222 VGALAKNEKM--KFMTSTKVVGGTNNG----------------------DSVSLEVEGK-NGKRETVTCEALLVSVGRR 275 (468)
T ss_dssp HHHHHHHTCC--EEECSCEEEEEEECS----------------------SSEEEEEECC----EEEEEESEEEECSCEE
T ss_pred HHHHhhcCCc--EEEeCCEEEEEEEcC----------------------CeEEEEEEcC-CCceEEEECCEEEECCCcc
Confidence 8888 88899 899999999998765 3355665421 1333579999999999965
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-06 Score=83.82 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=78.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+++
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~~ 234 (478)
T 3dk9_A 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------RS--FDSMISTNC 234 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHHH
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999975321 00 124677788
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC-ceEEEEecCCCCce--eEEEeCEEEEeecc
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG-KWTVAVEDAKNHST--EVHQVDFVILCVGR 160 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~i~~d~vIlAtG~ 160 (418)
.+.+++.++ .+..+++|.+++... ++ ...+.+.+..++.. .++.+|.||+|+|.
T Consensus 235 ~~~l~~~gv--~i~~~~~v~~i~~~~---------------------~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 235 TEELENAGV--EVLKFSQVKEVKKTL---------------------SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp HHHHHHTTC--EEETTEEEEEEEECS---------------------SSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEcC---------------------CCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 888888899 899999999998765 12 24455554332332 68999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 292 ~ 292 (478)
T 3dk9_A 292 V 292 (478)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=85.47 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=77.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++++|||+|+.|+.+|..|.+. |.+|+++++.+.+.. . -..++.
T Consensus 188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------------------~--~d~~~~ 234 (490)
T 1fec_A 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------------------------------G--FDSELR 234 (490)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------------------------------T--SCHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-------------------------------c--cCHHHH
Confidence 6899999999999999999998 999999999763310 0 114677
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+.+.+++.|+ +++++++|.+++..+ ++...|.+.++ .++.||.||+|+|.
T Consensus 235 ~~l~~~l~~~GV--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~G-----~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 235 KQLTEQLRANGI--NVRTHENPAKVTKNA---------------------DGTRHVVFESG-----AEADYDVVMLAIGR 286 (490)
T ss_dssp HHHHHHHHHTTE--EEEETCCEEEEEECT---------------------TSCEEEEETTS-----CEEEESEEEECSCE
T ss_pred HHHHHHHHhCCC--EEEeCCEEEEEEEcC---------------------CCEEEEEECCC-----cEEEcCEEEEccCC
Confidence 888888888899 899999999998764 23356666554 47999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 287 ~ 287 (490)
T 1fec_A 287 V 287 (490)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=85.54 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=77.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++++|||+|+.|+.+|..|++. |.+|+++++.+.+. .. -..++.
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~ 238 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-------------------------------RG--FDETIR 238 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC-------------------------------TT--SCHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc-------------------------------cc--cCHHHH
Confidence 6899999999999999999998 99999999975321 00 114677
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
..+.+.+++.++ +++++++|.+++... ++...|.+.++ .++.||.||+|+|.
T Consensus 239 ~~l~~~l~~~GV--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~G-----~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 239 EEVTKQLTANGI--EIMTNENPAKVSLNT---------------------DGSKHVTFESG-----KTLDVDVVMMAIGR 290 (495)
T ss_dssp HHHHHHHHHTTC--EEEESCCEEEEEECT---------------------TSCEEEEETTS-----CEEEESEEEECSCE
T ss_pred HHHHHHHHhCCC--EEEeCCEEEEEEEcC---------------------CceEEEEECCC-----cEEEcCEEEECCCC
Confidence 788888888899 899999999998754 23356666555 47999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 291 ~ 291 (495)
T 2wpf_A 291 I 291 (495)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=85.82 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=77.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 261 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------LI--KDNETRAYV 261 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------TC--CSHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc-------------------------------cc--ccHHHHHHH
Confidence 789999999999999999999999999999976331 00 124677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc---eEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK---WTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+.+++.|+ +++++++|.+++..+ ++. +.|.+.++ ..++.||.||+|+|.
T Consensus 262 ~~~l~~~GV--~i~~~~~V~~i~~~~---------------------~~~v~~~~v~~~~G----~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 262 LDRMKEQGM--EIISGSNVTRIEEDA---------------------NGRVQAVVAMTPNG----EMRIETDFVFLGLGE 314 (523)
T ss_dssp HHHHHHTTC--EEESSCEEEEEEECT---------------------TSBEEEEEEEETTE----EEEEECSCEEECCCC
T ss_pred HHHHHhCCc--EEEECCEEEEEEEcC---------------------CCceEEEEEEECCC----cEEEEcCEEEECcCC
Confidence 888888899 899999999998754 122 45655443 137999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 315 ~ 315 (523)
T 1mo9_A 315 Q 315 (523)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=6.4e-06 Score=82.36 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=79.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.. +. ..+ ..++.+.+
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l-------------------------------~~~--d~~~~~~l 231 (488)
T 3dgz_A 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PL-------------------------------RGF--DQQMSSLV 231 (488)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SS-------------------------------TTS--CHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cc-------------------------------ccC--CHHHHHHH
Confidence 579999999999999999999999999999842 10 001 14677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ .+++++.+.+++... ++...+.+.+..++...++.||.||+|+|..
T Consensus 232 ~~~l~~~gv--~~~~~~~v~~i~~~~---------------------~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~ 286 (488)
T 3dgz_A 232 TEHMESHGT--QFLKGCVPSHIKKLP---------------------TNQLQVTWEDHASGKEDTGTFDTVLWAIGRV 286 (488)
T ss_dssp HHHHHHTTC--EEEETEEEEEEEECT---------------------TSCEEEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEcC---------------------CCcEEEEEEeCCCCeeEEEECCEEEEcccCC
Confidence 888888899 899999999998754 2445676666444555578999999999954
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=86.96 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=76.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+.+|..|++.|.+|+|+++.+.+.. . ...++..+
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 217 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-------------------------------T--YDSELTAP 217 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999999763321 0 11466777
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++.++++|.+++. + + ..+. . ++|...++.||.||+|+|..
T Consensus 218 l~~~l~~~gv--~i~~~~~v~~i~~-~----------------------~-v~v~--~-~~G~~~~i~~D~vv~a~G~~- 267 (458)
T 1lvl_A 218 VAESLKKLGI--ALHLGHSVEGYEN-G----------------------C-LLAN--D-GKGGQLRLEADRVLVAVGRR- 267 (458)
T ss_dssp HHHHHHHHTC--EEETTCEEEEEET-T----------------------E-EEEE--C-SSSCCCEECCSCEEECCCEE-
T ss_pred HHHHHHHCCC--EEEECCEEEEEEe-C----------------------C-EEEE--E-CCCceEEEECCEEEECcCCC-
Confidence 7888888898 8999999999986 5 2 3333 2 12333579999999999965
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+.+
T Consensus 268 --p~~~ 271 (458)
T 1lvl_A 268 --PRTK 271 (458)
T ss_dssp --ECCS
T ss_pred --cCCC
Confidence 5544
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-06 Score=82.57 Aligned_cols=94 Identities=23% Similarity=0.436 Sum_probs=75.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .. ...++..+
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------~~--~~~~~~~~ 192 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS------------------------------RA--APATLADF 192 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------------------------------cc--cCHHHHHH
Confidence 37899999999999999999999999999999763310 00 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.|+ +++++++|.+++ + + .|.+.++ .++.||.||+|+|..
T Consensus 193 l~~~l~~~GV--~i~~~~~v~~i~--~----------------------~--~v~~~~g-----~~i~~D~vi~a~G~~ 238 (408)
T 2gqw_A 193 VARYHAAQGV--DLRFERSVTGSV--D----------------------G--VVLLDDG-----TRIAADMVVVGIGVL 238 (408)
T ss_dssp HHHHHHHTTC--EEEESCCEEEEE--T----------------------T--EEEETTS-----CEEECSEEEECSCEE
T ss_pred HHHHHHHcCc--EEEeCCEEEEEE--C----------------------C--EEEECCC-----CEEEcCEEEECcCCC
Confidence 8888888899 899999999998 4 2 4666554 579999999999965
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=86.01 Aligned_cols=101 Identities=22% Similarity=0.201 Sum_probs=77.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ...++.+.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 231 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-------------------------------G--ADRDLVKV 231 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------------------T--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999999763310 0 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .+.++++|.+++... +...|.+.+.. +...++.||.||+|+|..
T Consensus 232 l~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~~-~~g~~~~~D~vv~a~G~~ 285 (482)
T 1ojt_A 232 WQKQNEYRFD--NIMVNTKTVAVEPKE----------------------DGVYVTFEGAN-APKEPQRYDAVLVAAGRA 285 (482)
T ss_dssp HHHHHGGGEE--EEECSCEEEEEEEET----------------------TEEEEEEESSS-CCSSCEEESCEEECCCEE
T ss_pred HHHHHHhcCC--EEEECCEEEEEEEcC----------------------CeEEEEEeccC-CCceEEEcCEEEECcCCC
Confidence 8888888888 899999999998765 33556665410 111468899999999965
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=83.04 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=76.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .. ...++.++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------~~--~~~~~~~~ 196 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE------------------------------RV--TAPPVSAF 196 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------------------------------ch--hhHHHHHH
Confidence 36899999999999999999999999999999753210 00 11467777
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEE--cCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEF--EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+..++.|+ .+.++++|.+++. .+ +....|.+.++ .++.||.||+|+|.
T Consensus 197 l~~~l~~~GV--~i~~~~~v~~i~~~~~~---------------------~~v~~v~~~~G-----~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 197 YEHLHREAGV--DIRTGTQVCGFEMSTDQ---------------------QKVTAVLCEDG-----TRLPADLVIAGIGL 248 (431)
T ss_dssp HHHHHHHHTC--EEECSCCEEEEEECTTT---------------------CCEEEEEETTS-----CEEECSEEEECCCE
T ss_pred HHHHHHhCCe--EEEeCCEEEEEEeccCC---------------------CcEEEEEeCCC-----CEEEcCEEEECCCC
Confidence 8888888899 8999999999987 33 12235666555 57999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 249 ~ 249 (431)
T 1q1r_A 249 I 249 (431)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-06 Score=84.57 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=77.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+.+
T Consensus 183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 229 (499)
T 1xdi_A 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL-------------------------------PY--EDADAALVL 229 (499)
T ss_dssp SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS-------------------------------CC--SSHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999976331 01 114677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.|+ .+.++++|.+++... +...|...++ .++.+|.||+|+|..
T Consensus 230 ~~~l~~~GV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g-----~~i~aD~Vv~a~G~~ 278 (499)
T 1xdi_A 230 EESFAERGV--RLFKNARAASVTRTG----------------------AGVLVTMTDG-----RTVEGSHALMTIGSV 278 (499)
T ss_dssp HHHHHHTTC--EEETTCCEEEEEECS----------------------SSEEEEETTS-----CEEEESEEEECCCEE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEeC----------------------CEEEEEECCC-----cEEEcCEEEECCCCC
Confidence 888888899 899999999998765 3355554444 579999999999965
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-06 Score=83.86 Aligned_cols=95 Identities=11% Similarity=0.165 Sum_probs=76.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. . ...++.+.
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~---~~~~~~~~ 221 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF-------------------------------R---EDPAIGEA 221 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------T---SCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-------------------------------C---CCHHHHHH
Confidence 3689999999999999999999999999999975221 1 11467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.|+ +++++++|.+++.+. +.+.|.+. + .++.+|.||+|+|..
T Consensus 222 l~~~l~~~Gv--~i~~~~~v~~i~~~~----------------------~~~~v~~~-~-----~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 222 VTAAFRAEGI--EVLEHTQASQVAHMD----------------------GEFVLTTT-H-----GELRADKLLVATGRT 270 (467)
T ss_dssp HHHHHHHTTC--EEETTCCEEEEEEET----------------------TEEEEEET-T-----EEEEESEEEECSCEE
T ss_pred HHHHHHhCCC--EEEcCCEEEEEEEeC----------------------CEEEEEEC-C-----cEEEcCEEEECCCCC
Confidence 8888888899 899999999998755 34555553 2 479999999999965
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=89.13 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=32.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC------CCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~------~~~v~iie~~~~ 37 (418)
.+||+|||||.|||++|..|++. |.+|+|||+...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 37999999999999999999997 999999999653
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.3e-06 Score=82.64 Aligned_cols=100 Identities=27% Similarity=0.303 Sum_probs=79.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~ 226 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------PA--VDEQVAKE 226 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999976331 00 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.++ .+.++++|.+++..+ +...+.+.+++ + ..++.+|.||+|+|..
T Consensus 227 l~~~l~~~Gv--~v~~~~~v~~i~~~~----------------------~~~~v~~~~~~-g-~~~~~~D~vi~a~G~~ 279 (476)
T 3lad_A 227 AQKILTKQGL--KILLGARVTGTEVKN----------------------KQVTVKFVDAE-G-EKSQAFDKLIVAVGRR 279 (476)
T ss_dssp HHHHHHHTTE--EEEETCEEEEEEECS----------------------SCEEEEEESSS-E-EEEEEESEEEECSCEE
T ss_pred HHHHHHhCCC--EEEECCEEEEEEEcC----------------------CEEEEEEEeCC-C-cEEEECCEEEEeeCCc
Confidence 8888888899 899999999998765 44566666542 2 4679999999999965
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-06 Score=78.25 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=76.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ......+.
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-----------------------------------~~~~~~~~ 196 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-----------------------------------AHEASVKE 196 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-----------------------------------SCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-----------------------------------ccHHHHHH
Confidence 3689999999999999999999999999999965221 11345666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++..++.++ .+.+++++.+++.++ +...|.+....++...++.+|.||+|+|..
T Consensus 197 l~~~l~~~gv--~v~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2zbw_A 197 LMKAHEEGRL--EVLTPYELRRVEGDE----------------------RVRWAVVFHNQTQEELALEVDAVLILAGYI 251 (335)
T ss_dssp HHHHHHTTSS--EEETTEEEEEEEESS----------------------SEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHhccccCCe--EEecCCcceeEccCC----------------------CeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence 7777777788 899999999998743 223465553323445689999999999965
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=87.96 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=38.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++||+||..|++ .|++|+|+|+++.+||..+.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T 52 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAST 52 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeee
Confidence 3799999999999999999997 59999999999999997654
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.2e-07 Score=91.13 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
||+|||||||++||++|..|++.|++|+|+|+++.+||...
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence 48899999999999999999999999999999999998543
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=83.26 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.0
Q ss_pred CccEEEEcCCHHHHHHHHHHH---h-CCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLL---L-KGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~---~-~~~~v~iie~~~~ 37 (418)
.+||+|||||++||++|..|+ + .|.+|+|+|+...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 379999999999999999999 6 8999999999763
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.5e-06 Score=83.06 Aligned_cols=98 Identities=26% Similarity=0.276 Sum_probs=78.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
.++++|||+|+.|+.+|..|++. +.+|+++++.+.+.. .. ...++.+
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~------------------------------~~--~~~~~~~ 206 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP------------------------------GF--TSKSLSQ 206 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST------------------------------TT--SCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc------------------------------cc--cCHHHHH
Confidence 36899999999999999999999 999999999753210 01 1146778
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+.+++.++ ++.++++|.+++..+ +...+.+.++ .++.||.||+|+|..
T Consensus 207 ~l~~~l~~~GV--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g-----~~i~aD~Vv~a~G~~ 257 (472)
T 3iwa_A 207 MLRHDLEKNDV--VVHTGEKVVRLEGEN----------------------GKVARVITDK-----RTLDADLVILAAGVS 257 (472)
T ss_dssp HHHHHHHHTTC--EEECSCCEEEEEESS----------------------SBEEEEEESS-----CEEECSEEEECSCEE
T ss_pred HHHHHHHhcCC--EEEeCCEEEEEEccC----------------------CeEEEEEeCC-----CEEEcCEEEECCCCC
Confidence 88888888899 899999999998754 4455666665 489999999999965
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.1e-06 Score=83.70 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=78.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|++.|.+++++++.+.+. ..+ ..++...
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~ 237 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-------------------------------RNF--DYDLRQL 237 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TTS--CHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc-------------------------------ccc--CHHHHHH
Confidence 3689999999999999999999999999999975331 001 1467777
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.|+ .+.++++|.+++..+ +.+.|.+.++ .++.+|.||+|+|..
T Consensus 238 l~~~l~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g-----~~i~aD~Vi~A~G~~ 287 (484)
T 3o0h_A 238 LNDAMVAKGI--SIIYEATVSQVQSTE----------------------NCYNVVLTNG-----QTICADRVMLATGRV 287 (484)
T ss_dssp HHHHHHHHTC--EEESSCCEEEEEECS----------------------SSEEEEETTS-----CEEEESEEEECCCEE
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEeeC----------------------CEEEEEECCC-----cEEEcCEEEEeeCCC
Confidence 8888888899 899999999998765 4466777665 589999999999965
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-06 Score=83.30 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=76.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 231 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-------------------------------RK--FDECIQNT 231 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999976331 00 11467777
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC-ceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG-KWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.|+ ++.++++|.+++..+ ++ ...|.+.++ . .++.+|.||+|+|..
T Consensus 232 l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------------~~~~~~v~~~~G---~-~~i~~D~vv~a~G~~ 284 (479)
T 2hqm_A 232 ITDHYVKEGI--NVHKLSKIVKVEKNV---------------------ETDKLKIHMNDS---K-SIDDVDELIWTIGRK 284 (479)
T ss_dssp HHHHHHHHTC--EEECSCCEEEEEECC----------------------CCCEEEEETTS---C-EEEEESEEEECSCEE
T ss_pred HHHHHHhCCe--EEEeCCEEEEEEEcC---------------------CCcEEEEEECCC---c-EEEEcCEEEECCCCC
Confidence 8888888899 899999999998754 12 245655443 1 479999999999965
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=84.77 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=74.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 232 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-------------------------------I--YDGDMAEY 232 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-------------------------------S--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-------------------------------c--CCHHHHHH
Confidence 47899999999999999999999999999999753311 0 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.|+ ++.++++|.+++... +.+.+.+. + .++.||.||+|+|..
T Consensus 233 l~~~l~~~Gv--~i~~~~~v~~i~~~~----------------------~v~~v~~~-~-----~~i~~D~vi~a~G~~ 281 (480)
T 3cgb_A 233 IYKEADKHHI--EILTNENVKAFKGNE----------------------RVEAVETD-K-----GTYKADLVLVSVGVK 281 (480)
T ss_dssp HHHHHHHTTC--EEECSCCEEEEEESS----------------------BEEEEEET-T-----EEEECSEEEECSCEE
T ss_pred HHHHHHHcCc--EEEcCCEEEEEEcCC----------------------cEEEEEEC-C-----CEEEcCEEEECcCCC
Confidence 8888888899 899999999998643 22334432 2 379999999999965
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.7e-06 Score=84.17 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=74.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. .. ...++.+.
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------~~--~~~~~~~~ 241 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA------------------------------GY--YDRDLTDL 241 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh------------------------------hH--HHHHHHHH
Confidence 46899999999999999999999999999999753310 00 11467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ ++.++++|.+++.+. ....+.+ ++ .++.||.||+|+|..
T Consensus 242 l~~~l~~~GV--~i~~~~~v~~i~~~~----------------------~v~~v~~-~g-----~~i~~D~Vi~a~G~~ 290 (490)
T 2bc0_A 242 MAKNMEEHGI--QLAFGETVKEVAGNG----------------------KVEKIIT-DK-----NEYDVDMVILAVGFR 290 (490)
T ss_dssp HHHHHHTTTC--EEEETCCEEEEECSS----------------------SCCEEEE-SS-----CEEECSEEEECCCEE
T ss_pred HHHHHHhCCe--EEEeCCEEEEEEcCC----------------------cEEEEEE-CC-----cEEECCEEEECCCCC
Confidence 8888888899 899999999998532 2223444 33 479999999999965
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=82.71 Aligned_cols=93 Identities=19% Similarity=0.327 Sum_probs=73.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+ ..++.+.
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~-------------------------------~~--d~~~~~~ 193 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK-------------------------------LM--DADMNQP 193 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST-------------------------------TS--CGGGGHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccc-------------------------------cc--cchhHHH
Confidence 35899999999999999999999999999999763311 01 1355667
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .+.++++|.+++... +.+.++ +++.||.|++|+|..
T Consensus 194 ~~~~l~~~gV--~i~~~~~v~~~~~~~--------------------------v~~~~g-----~~~~~D~vl~a~G~~ 239 (437)
T 4eqs_A 194 ILDELDKREI--PYRLNEEINAINGNE--------------------------ITFKSG-----KVEHYDMIIEGVGTH 239 (437)
T ss_dssp HHHHHHHTTC--CEEESCCEEEEETTE--------------------------EEETTS-----CEEECSEEEECCCEE
T ss_pred HHHHhhccce--EEEeccEEEEecCCe--------------------------eeecCC-----eEEeeeeEEEEecee
Confidence 7778888899 899999998876433 666666 589999999999954
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=82.62 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=74.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .. ...++.+.
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------~~--~~~~~~~~ 196 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY------------------------------KY--FDKEFTDI 196 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh------------------------------hh--hhhhHHHH
Confidence 36899999999999999999999999999999753310 00 11467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-EEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.|+ .++++++|.+++..+ +... +.. ++ .++.||.||+|+|..
T Consensus 197 l~~~l~~~Gv--~i~~~~~v~~i~~~~----------------------~~v~~v~~-~g-----~~i~~D~vv~a~G~~ 246 (452)
T 2cdu_A 197 LAKDYEAHGV--NLVLGSKVAAFEEVD----------------------DEIITKTL-DG-----KEIKSDIAILCIGFR 246 (452)
T ss_dssp HHHHHHHTTC--EEEESSCEEEEEEET----------------------TEEEEEET-TS-----CEEEESEEEECCCEE
T ss_pred HHHHHHHCCC--EEEcCCeeEEEEcCC----------------------CeEEEEEe-CC-----CEEECCEEEECcCCC
Confidence 8888888899 899999999998643 2222 332 33 479999999999965
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.1e-06 Score=84.02 Aligned_cols=114 Identities=15% Similarity=0.307 Sum_probs=77.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. . ....++...+
T Consensus 152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~l 198 (565)
T 3ntd_A 152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM-------------------------------T--PVDREMAGFA 198 (565)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC-------------------------------T--TSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc-------------------------------h--hcCHHHHHHH
Confidence 589999999999999999999999999999975321 1 0124677788
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC-CCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG-SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.++ .+.+++++.+++... ..... ....+...... .++...+...++ .++.||.||+|+|..
T Consensus 199 ~~~l~~~GV--~i~~~~~v~~i~~~~--~~~~~--~~~~~~~~~~~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~~ 266 (565)
T 3ntd_A 199 HQAIRDQGV--DLRLGTALSEVSYQV--QTHVA--SDAAGEDTAHQHIKGHLSLTLSNG-----ELLETDLLIMAIGVR 266 (565)
T ss_dssp HHHHHHTTC--EEEETCCEEEEEEEC--CCCCC--CGGGTCCCTTCCTTCEEEEEETTS-----CEEEESEEEECSCEE
T ss_pred HHHHHHCCC--EEEeCCeEEEEeccc--ccccc--ccccccccccccCCCcEEEEEcCC-----CEEEcCEEEECcCCc
Confidence 888888899 899999999998742 00000 00000000000 123455555444 489999999999965
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6e-07 Score=90.51 Aligned_cols=44 Identities=39% Similarity=0.600 Sum_probs=39.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~ 44 (418)
|+.+||+|||||++||++|..|++.| ++|+|+|+++++||....
T Consensus 6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t 50 (516)
T 1rsg_A 6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT 50 (516)
T ss_dssp CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence 34579999999999999999999999 999999999999997544
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-06 Score=82.36 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. . -..++.+++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~---~~~~~~~~l 189 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-------------------------------G---LDEELSNMI 189 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-------------------------------T---CCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec-------------------------------c---CCHHHHHHH
Confidence 689999999999999999999999999999976331 1 114677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++.++++|.+++. . .|.+.++ . +.+|.||+|+|..
T Consensus 190 ~~~l~~~gV--~i~~~~~v~~i~~-~-------------------------~v~~~~g-----~-i~~D~vi~a~G~~ 233 (367)
T 1xhc_A 190 KDMLEETGV--KFFLNSELLEANE-E-------------------------GVLTNSG-----F-IEGKVKICAIGIV 233 (367)
T ss_dssp HHHHHHTTE--EEECSCCEEEECS-S-------------------------EEEETTE-----E-EECSCEEEECCEE
T ss_pred HHHHHHCCC--EEEcCCEEEEEEe-e-------------------------EEEECCC-----E-EEcCEEEECcCCC
Confidence 888888899 8999999998862 1 2555443 4 9999999999965
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-06 Score=83.58 Aligned_cols=43 Identities=35% Similarity=0.558 Sum_probs=39.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~ 44 (418)
+.+||+|||||++||++|..|++.| .+|+|+|+++.+||.+..
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t 48 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS 48 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence 4689999999999999999999999 899999999999997665
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-06 Score=82.87 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=80.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+..|..+++.|.+|+|+++.. + ... ...++...
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~-~-------------------------------L~~--~D~ei~~~ 268 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI-V-------------------------------LRG--FDQQCAVK 268 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC-S-------------------------------STT--SCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc-c-------------------------------ccc--cchhHHHH
Confidence 3689999999999999999999999999998742 1 001 12578888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+....++.++ .+..+..+..++... +...|.+.++ .++.+|.|++|+|.
T Consensus 269 l~~~l~~~gi--~~~~~~~v~~~~~~~----------------------~~~~v~~~~~-----~~~~~D~vLvAvGR-- 317 (542)
T 4b1b_A 269 VKLYMEEQGV--MFKNGILPKKLTKMD----------------------DKILVEFSDK-----TSELYDTVLYAIGR-- 317 (542)
T ss_dssp HHHHHHHTTC--EEEETCCEEEEEEET----------------------TEEEEEETTS-----CEEEESEEEECSCE--
T ss_pred HHHHHHhhcc--eeecceEEEEEEecC----------------------CeEEEEEcCC-----CeEEEEEEEEcccc--
Confidence 8888899899 899999999998876 4456666555 47889999999995
Q ss_pred CCCCCCC
Q 014821 163 DVPNIPE 169 (418)
Q Consensus 163 ~~p~~p~ 169 (418)
.|+...
T Consensus 318 -~Pnt~~ 323 (542)
T 4b1b_A 318 -KGDIDG 323 (542)
T ss_dssp -EESCGG
T ss_pred -cCCccc
Confidence 476654
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.7e-06 Score=81.95 Aligned_cols=106 Identities=13% Similarity=0.042 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhh
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLS 283 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (418)
|+|+|||+|..|+.+|..|.+.+.. .+|+++.+++.+... |.-.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~-~~VtlI~~~~~~~~~-------p~l~---------------------------- 46 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPD-LKITLISDRPYFGFT-------PAFP---------------------------- 46 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTT-CEEEEECSSSEEECG-------GGHH----------------------------
T ss_pred CcEEEECCCHHHHHHHHHHhccCcC-CeEEEEcCCCCCccC-------ccHH----------------------------
Confidence 6899999999999999999887654 569999988753221 0000
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEec--CcEEEcCCce
Q 014821 284 PLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCE--DGIVVDGQTT 361 (418)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~--~~v~~~~g~~ 361 (418)
...... +.+. .+...+.+.+++.+|+++.+.+..++. +.|++++|++
T Consensus 47 -----------~v~~g~-------~~~~-------------~i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~ 95 (430)
T 3hyw_A 47 -----------HLAMGW-------RKFE-------------DISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKK 95 (430)
T ss_dssp -----------HHHHTC-------SCGG-------------GSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCE
T ss_pred -----------HHhcCC-------CCHH-------------HhhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCE
Confidence 000000 0000 011122345566789999998888875 4599999999
Q ss_pred eeeccEEEEccCCCCC
Q 014821 362 PLKTDLVILATGFKGD 377 (418)
Q Consensus 362 ~~~~D~Vi~atG~~~~ 377 (418)
+++|.+|+|||.+..
T Consensus 96 -i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 96 -IEYDYLVIATGPKLV 110 (430)
T ss_dssp -EECSEEEECCCCEEE
T ss_pred -EECCEEEEeCCCCcc
Confidence 999999999997643
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=86.37 Aligned_cols=42 Identities=14% Similarity=0.352 Sum_probs=39.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus 11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 579999999999999999999999999999999999998766
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.4e-06 Score=80.90 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=76.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+.
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-------------------------------~~--~~~~~~~~ 216 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-------------------------------SR--FDQDMRRG 216 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999975321 00 11467788
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE-EecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA-VEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.|+ ++.++++|.+++..+ ++...|. +.++ + +.+|.||+|+|..
T Consensus 217 l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~~g-----~-i~aD~Vv~a~G~~ 267 (463)
T 4dna_A 217 LHAAMEEKGI--RILCEDIIQSVSADA---------------------DGRRVATTMKHG-----E-IVADQVMLALGRM 267 (463)
T ss_dssp HHHHHHHTTC--EEECSCCEEEEEECT---------------------TSCEEEEESSSC-----E-EEESEEEECSCEE
T ss_pred HHHHHHHCCC--EEECCCEEEEEEEcC---------------------CCEEEEEEcCCC-----e-EEeCEEEEeeCcc
Confidence 8888888899 899999999998865 2334555 4444 4 9999999999965
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-06 Score=84.25 Aligned_cols=44 Identities=39% Similarity=0.579 Sum_probs=41.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|+++||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 m~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 78899999999999999999999999999999999999998876
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=79.66 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=75.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.. +. ..+ ..++.+.+
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~l-------------------------------~~~--d~~~~~~~ 256 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------RGF--DQDMANKI 256 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SS-------------------------------TTS--CHHHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc-cc-------------------------------ccC--CHHHHHHH
Confidence 579999999999999999999999999999842 11 011 14677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ .+..++.+..++... +. ..+...+.+...+.+....+.||.||+|+|..
T Consensus 257 ~~~l~~~GV--~v~~~~~v~~v~~~~--~~----------------~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~ 314 (519)
T 3qfa_A 257 GEHMEEHGI--KFIRQFVPIKVEQIE--AG----------------TPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD 314 (519)
T ss_dssp HHHHHHTTC--EEEESEEEEEEEEEE--CC----------------TTCEEEEEEEESSSSCEEEEEESEEEECSCEE
T ss_pred HHHHHHCCC--EEEeCCeEEEEEEcc--CC----------------CCceEEEEEEECCCcEEEEEECCEEEEecCCc
Confidence 888888899 899998888887644 00 01234555544332334578999999999965
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=81.69 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=74.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHh----CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL----KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~----~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+.+. ...++ ..
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~------------------------------~~~l~--~~ 227 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM------------------------------GKILP--EY 227 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT------------------------------TTTSC--HH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc------------------------------cccCC--HH
Confidence 3689999999999999999987 478899998864221 01111 46
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+...+.+..++.|+ .++++++|.+++..+ +...|.+.++ .++.||.||+|+
T Consensus 228 ~~~~~~~~l~~~GV--~v~~~~~V~~i~~~~----------------------~~~~v~l~dG-----~~i~aD~Vv~a~ 278 (493)
T 1m6i_A 228 LSNWTMEKVRREGV--KVMPNAIVQSVGVSS----------------------GKLLIKLKDG-----RKVETDHIVAAV 278 (493)
T ss_dssp HHHHHHHHHHTTTC--EEECSCCEEEEEEET----------------------TEEEEEETTS-----CEEEESEEEECC
T ss_pred HHHHHHHHHHhcCC--EEEeCCEEEEEEecC----------------------CeEEEEECCC-----CEEECCEEEECC
Confidence 67778888888899 899999999998654 3345666555 589999999999
Q ss_pred ccC
Q 014821 159 GRF 161 (418)
Q Consensus 159 G~~ 161 (418)
|..
T Consensus 279 G~~ 281 (493)
T 1m6i_A 279 GLE 281 (493)
T ss_dssp CEE
T ss_pred CCC
Confidence 965
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=83.11 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=36.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.+||+|||||++|+.+|..|++.|++|+|||+.+..||.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 5799999999999999999999999999999988777543
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=77.21 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=73.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|.+|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-----------------------------------~~~~~~~~ 207 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ-----------------------------------GHGKTAHE 207 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS-----------------------------------SCSHHHHS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC-----------------------------------CCHHHHHH
Confidence 3689999999999999999999999999999965221 00234455
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .+.+++++.+++..+ +....|.+. ..++...++.+|.||+|+|..
T Consensus 208 l~~~~~~~gv--~i~~~~~v~~i~~~~---------------------~~v~~v~~~-~~~g~~~~i~~D~vi~a~G~~ 262 (360)
T 3ab1_A 208 VERARANGTI--DVYLETEVASIEESN---------------------GVLTRVHLR-SSDGSKWTVEADRLLILIGFK 262 (360)
T ss_dssp SHHHHHHTSE--EEESSEEEEEEEEET---------------------TEEEEEEEE-ETTCCEEEEECSEEEECCCBC
T ss_pred HHHHhhcCce--EEEcCcCHHHhccCC---------------------CceEEEEEE-ecCCCeEEEeCCEEEECCCCC
Confidence 6666667788 899999999998764 122245554 122445689999999999954
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=75.74 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=72.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+.+|..|.+.+.+++++++.+.+. ....+
T Consensus 173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~-----------------------------------~~~~~--- 214 (338)
T 3itj_A 173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR-----------------------------------ASTIM--- 214 (338)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC-----------------------------------CCHHH---
Confidence 3689999999999999999999999999999965221 01122
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+...+..++ .+.+++++.+++.+. +....|.+.+..++...++.||.||+|+|..
T Consensus 215 ~~~l~~~~gv--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 270 (338)
T 3itj_A 215 QKRAEKNEKI--EILYNTVALEAKGDG---------------------KLLNALRIKNTKKNEETDLPVSGLFYAIGHT 270 (338)
T ss_dssp HHHHHHCTTE--EEECSEEEEEEEESS---------------------SSEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred HHHHHhcCCe--EEeecceeEEEEccc---------------------CcEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence 2222233488 889999999998765 2234477776545666789999999999965
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.2e-06 Score=82.17 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=72.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhh
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATM 281 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (418)
++|+|+|||+|..|+-+|..|...+.. .+|+++.+++.+... |+....
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~-~~Vtlie~~~~~~~~-------p~~~~v------------------------ 48 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPS-IEVTLIEPNETYYTC-------YMSNEV------------------------ 48 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTT-SEEEEECSCSSEECS-------TTHHHH------------------------
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcC-CeEEEEeCCCCCCCc-------cCHHHH------------------------
Confidence 379999999999999999999887653 469999887643221 110000
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEecC--cEEEcCC
Q 014821 282 LSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCED--GIVVDGQ 359 (418)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~--~v~~~~g 359 (418)
... ..+.... ... .+.+...+++++.+.+..++.+ .+.+.+|
T Consensus 49 ---------------~~g--------~~~~~~~------------~~~-~~~~~~~gv~~i~~~v~~id~~~~~v~~~~g 92 (401)
T 3vrd_B 49 ---------------IGG--------DRELASL------------RVG-YDGLRAHGIQVVHDSALGIDPDKKLVKTAGG 92 (401)
T ss_dssp ---------------HHT--------SSCGGGG------------EEC-SHHHHHTTCEEECSCEEEEETTTTEEEETTS
T ss_pred ---------------hcC--------CCCHHHH------------hhC-HHHHHHCCCEEEEeEEEEEEccCcEEEeccc
Confidence 000 0000000 000 1233445789998888888754 5888999
Q ss_pred ceeeeccEEEEccCCCCCcchh
Q 014821 360 TTPLKTDLVILATGFKGDVKLK 381 (418)
Q Consensus 360 ~~~~~~D~Vi~atG~~~~~~~~ 381 (418)
.+ +.+|.+|+|||.+++..-.
T Consensus 93 ~~-i~yd~LviAtG~~~~~~~i 113 (401)
T 3vrd_B 93 AE-FAYDRCVVAPGIDLLYDKI 113 (401)
T ss_dssp CE-EECSEEEECCCEEECGGGS
T ss_pred ce-eecceeeeccCCccccCCc
Confidence 99 9999999999988765433
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-06 Score=85.35 Aligned_cols=44 Identities=32% Similarity=0.494 Sum_probs=40.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~ 44 (418)
|.++||+|||||++||++|+.|++.| .+|+|+|+++.+||....
T Consensus 2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 77899999999999999999999999 999999999999886554
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-06 Score=83.76 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=40.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++|+++|..|++. |.+|+|+|+++.+||.+..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence 68999999999999999999998 9999999999999998876
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.6e-05 Score=72.67 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+.+|..|++.+.+|+++++.+.+. ... .
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~----~ 184 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-----------------------------------ADQ----V 184 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-----------------------------------SCH----H
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC-----------------------------------ccH----H
Confidence 3689999999999999999999999999999865220 001 2
Q ss_pred HHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+.+ .++ .+.+++++.++..+. +....|.+.+..++...++.+|.||+|+|..
T Consensus 185 ~~~~l~~~~gv--~v~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 241 (310)
T 1fl2_A 185 LQDKLRSLKNV--DIILNAQTTEVKGDG---------------------SKVVGLEYRDRVSGDIHNIELAGIFVQIGLL 241 (310)
T ss_dssp HHHHHHTCTTE--EEESSEEEEEEEESS---------------------SSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred HHHHHhhCCCe--EEecCCceEEEEcCC---------------------CcEEEEEEEECCCCcEEEEEcCEEEEeeCCc
Confidence 2333344 577 788999999998654 1222466665444556789999999999954
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.2e-06 Score=81.89 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=43.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCCcceec
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQ 52 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~~~~l~ 52 (418)
.+||+|||||++||++|..|++.| .+|+|+|+++.+||.|.. ...+..+.
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~ 61 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWD 61 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEe
Confidence 579999999999999999999998 799999999999999887 45554443
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=82.23 Aligned_cols=95 Identities=20% Similarity=0.368 Sum_probs=75.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~ 233 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM-------------------------------PP--IDYEMAAY 233 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc-------------------------------cc--CCHHHHHH
Confidence 3689999999999999999999999999999975331 01 12467778
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+++.++ .+.++++|.+++... + .|.+.++ .++.||.||+|+|..
T Consensus 234 l~~~l~~~GV--~i~~~~~v~~i~~~~----------------------~--~v~~~~g-----~~i~~D~Vi~a~G~~ 281 (588)
T 3ics_A 234 VHEHMKNHDV--ELVFEDGVDALEENG----------------------A--VVRLKSG-----SVIQTDMLILAIGVQ 281 (588)
T ss_dssp HHHHHHHTTC--EEECSCCEEEEEGGG----------------------T--EEEETTS-----CEEECSEEEECSCEE
T ss_pred HHHHHHHcCC--EEEECCeEEEEecCC----------------------C--EEEECCC-----CEEEcCEEEEccCCC
Confidence 8888888899 899999999997654 2 3555555 489999999999965
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=74.69 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=69.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. ....+
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~--- 193 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR-----------------------------------ANKVA--- 193 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC-----------------------------------cchHH---
Confidence 3689999999999999999999999999999865220 00122
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+...++.++ ++.++++++++..+. ....|.+.+..+|...++.||.||+|+|..
T Consensus 194 ~~~l~~~~gv--~i~~~~~v~~i~~~~----------------------~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 248 (325)
T 2q7v_A 194 QARAFANPKM--KFIWDTAVEEIQGAD----------------------SVSGVKLRNLKTGEVSELATDGVFIFIGHV 248 (325)
T ss_dssp HHHHHTCTTE--EEECSEEEEEEEESS----------------------SEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred HHHHHhcCCc--eEecCCceEEEccCC----------------------cEEEEEEEECCCCcEEEEEcCEEEEccCCC
Confidence 2233333577 788899999998643 223466654333555689999999999955
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-06 Score=85.07 Aligned_cols=43 Identities=42% Similarity=0.561 Sum_probs=39.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence 3589999999999999999999999999999999999987643
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=74.47 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=69.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. ....+
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~--- 184 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR-----------------------------------CAPIT--- 184 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC-----------------------------------CCHHH---
Confidence 3689999999999999999999999999999865220 00122
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+...++.++ ++.+++++.++...+ +....|.+.+..++...++.||.||+|+|..
T Consensus 185 ~~~l~~~~gv--~v~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 240 (311)
T 2q0l_A 185 LEHAKNNDKI--EFLTPYVVEEIKGDA---------------------SGVSSLSIKNTATNEKRELVVPGFFIFVGYD 240 (311)
T ss_dssp HHHHHTCTTE--EEETTEEEEEEEEET---------------------TEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred HHHHhhCCCe--EEEeCCEEEEEECCC---------------------CcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence 2222234577 788899999998763 1222455554223455689999999999965
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=72.48 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=69.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. ....+.+
T Consensus 156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-----------------------------------~~~~l~~-- 198 (319)
T 3cty_A 156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-----------------------------------CENAYVQ-- 198 (319)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-----------------------------------SCHHHHH--
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-----------------------------------CCHHHHH--
Confidence 689999999999999999999999999999864220 0122322
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+.++ .+.+++++.++...+ +....|.+.+..++...++.||.||+|+|..
T Consensus 199 --~l~~~gv--~i~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (319)
T 3cty_A 199 --EIKKRNI--PYIMNAQVTEIVGDG---------------------KKVTGVKYKDRTTGEEKLIETDGVFIYVGLI 251 (319)
T ss_dssp --HHHHTTC--CEECSEEEEEEEESS---------------------SSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred --HHhcCCc--EEEcCCeEEEEecCC---------------------ceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence 3345688 899999999998754 1122455553223455689999999999965
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.6e-06 Score=84.70 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=38.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++||++|++|++.|. +|+|+|+++.+||....
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence 4799999999999999999999999 99999999999887654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=73.65 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=72.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|.+.+.+++++++.+.+. + .. .+
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~----------------------------------~-~~---~~ 195 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK----------------------------------A-QP---IY 195 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC----------------------------------S-CH---HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC----------------------------------c-CH---HH
Confidence 4689999999999999999999999999999975221 0 11 23
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++...++.++ .+.+++++.+++.+. ....|.+.+..+|...++.+|.||+|+|..
T Consensus 196 ~~~~~~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 250 (323)
T 3f8d_A 196 VETVKKKPNV--EFVLNSVVKEIKGDK----------------------VVKQVVVENLKTGEIKELNVNGVFIEIGFD 250 (323)
T ss_dssp HHHHHTCTTE--EEECSEEEEEEEESS----------------------SEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHHHhCCCc--EEEeCCEEEEEeccC----------------------ceeEEEEEECCCCceEEEEcCEEEEEECCC
Confidence 3444445577 788999999998754 334567766444555689999999999965
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-06 Score=81.31 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=39.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 579999999999999999999999999999999999998876
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-06 Score=85.21 Aligned_cols=41 Identities=39% Similarity=0.662 Sum_probs=38.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
++||+|||||++||++|..|++.|++|+|+|+++.+||...
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 44 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcee
Confidence 57999999999999999999999999999999999988644
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=73.55 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=70.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+
T Consensus 159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-----------------------------------~~~~~--- 200 (333)
T 1vdc_A 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-----------------------------------ASKIM--- 200 (333)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SCHHH---
T ss_pred CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC-----------------------------------ccHHH---
Confidence 3689999999999999999999999999999975220 00111
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC--CceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR--GKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++..++.++ ++.+++++.+++.+. + ....|.+.+..++...++.||.||+|+|.
T Consensus 201 ~~~~~~~~gv--~i~~~~~v~~i~~~~---------------------~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 257 (333)
T 1vdc_A 201 QQRALSNPKI--DVIWNSSVVEAYGDG---------------------ERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH 257 (333)
T ss_dssp HHHHHTCTTE--EEECSEEEEEEEESS---------------------SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred HHHHHhCCCe--eEecCCceEEEeCCC---------------------CccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence 1233445677 788899999998754 1 11235565433355578999999999996
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 258 ~ 258 (333)
T 1vdc_A 258 E 258 (333)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.3e-06 Score=83.54 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=39.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.+||+|||||++||++|..|++.|++|+|||+++.+||....
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 52 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWT 52 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceee
Confidence 3579999999999999999999999999999999999996543
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-05 Score=76.88 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=71.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..+ ..++.+.
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------~~~--~~~~~~~ 195 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR------------------------------RSF--DKEVTDI 195 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------TTS--CHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch------------------------------hhc--CHHHHHH
Confidence 36899999999999999999999999999999763311 001 1467777
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++. + .+.+++.+.+++... ....+ ..++ .++.||.||+|+|..
T Consensus 196 l~~~l~~~-v--~i~~~~~v~~i~~~~----------------------~v~~v-~~~g-----~~i~~D~Vv~a~G~~ 243 (449)
T 3kd9_A 196 LEEKLKKH-V--NLRLQEITMKIEGEE----------------------RVEKV-VTDA-----GEYKAELVILATGIK 243 (449)
T ss_dssp HHHHHTTT-S--EEEESCCEEEEECSS----------------------SCCEE-EETT-----EEEECSEEEECSCEE
T ss_pred HHHHHHhC-c--EEEeCCeEEEEeccC----------------------cEEEE-EeCC-----CEEECCEEEEeeCCc
Confidence 77777776 7 788999999987543 11123 2333 579999999999965
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.00 E-value=5e-06 Score=83.34 Aligned_cols=42 Identities=43% Similarity=0.672 Sum_probs=39.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 54 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 54 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 479999999999999999999999999999999999997665
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=75.03 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=70.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|.+|+.+|..|++.+.+|+++++.+.+... . + .........+.+++
T Consensus 167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~------~-----------~---------d~~~~~~~~~~~~l 220 (369)
T 3d1c_A 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP------D-----------A---------DPSVRLSPYTRQRL 220 (369)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------CTTSCCHHHHHHH
T ss_pred CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC------C-----------C---------CCCccCCHHHHHHH
Confidence 58999999999999999999999999999997532100 0 0 00111113556677
Q ss_pred HHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
....++.+ + .+..+++|.+++... +...|.+.++. ....+|.||+|+|..
T Consensus 221 ~~~l~~~g~v--~~~~~~~v~~i~~~~----------------------~~~~v~~~~g~----~~~~~d~vi~a~G~~ 271 (369)
T 3d1c_A 221 GNVIKQGARI--EMNVHYTVKDIDFNN----------------------GQYHISFDSGQ----SVHTPHEPILATGFD 271 (369)
T ss_dssp HHHHHTTCCE--EEECSCCEEEEEEET----------------------TEEEEEESSSC----CEEESSCCEECCCBC
T ss_pred HHHHhhCCcE--EEecCcEEEEEEecC----------------------CceEEEecCCe----EeccCCceEEeeccC
Confidence 77777775 8 788899999997654 34566665552 233469999999954
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-05 Score=76.86 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=71.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ...++.+.+
T Consensus 173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~-~d~~~~~~l 220 (466)
T 3l8k_A 173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI-------------------------------TL-EDQDIVNTL 220 (466)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------TS-CCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC-------------------------------CC-CCHHHHHHH
Confidence 6899999999999999999999999999999753310 00 013555555
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++..+ + .+.++++|.+++..+ .+...+.+.+ .+|...++.+|.||+|+|..
T Consensus 221 ~~~l~---v--~i~~~~~v~~i~~~~---------------------~~~v~v~~~~-~~G~~~~i~~D~vi~a~G~~ 271 (466)
T 3l8k_A 221 LSILK---L--NIKFNSPVTEVKKIK---------------------DDEYEVIYST-KDGSKKSIFTNSVVLAAGRR 271 (466)
T ss_dssp HHHHC---C--CEECSCCEEEEEEEE---------------------TTEEEEEECC-TTSCCEEEEESCEEECCCEE
T ss_pred HhcCE---E--EEEECCEEEEEEEcC---------------------CCcEEEEEEe-cCCceEEEEcCEEEECcCCC
Confidence 55443 5 788899999998743 1234555552 12344689999999999965
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-05 Score=71.87 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=73.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|..|+.+|..|++.+.+++++++.+.+. ......
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~-----------------------------------~~~~~~-- 196 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR-----------------------------------AHEHSV-- 196 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS-----------------------------------SCHHHH--
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC-----------------------------------ccHHHH--
Confidence 3689999999999999999999999999999865220 011111
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
..+++.++ .+..++++.+++... +...|.+.+..++...++.||.||+|+|..
T Consensus 197 --~~l~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 249 (332)
T 3lzw_A 197 --ENLHASKV--NVLTPFVPAELIGED----------------------KIEQLVLEEVKGDRKEILEIDDLIVNYGFV 249 (332)
T ss_dssp --HHHHHSSC--EEETTEEEEEEECSS----------------------SCCEEEEEETTSCCEEEEECSEEEECCCEE
T ss_pred --HHHhcCCe--EEEeCceeeEEecCC----------------------ceEEEEEEecCCCceEEEECCEEEEeeccC
Confidence 12456688 788899999998765 345677777555667889999999999965
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=77.11 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=38.9
Q ss_pred hhhhhccCcEEEeccCceeEecC--cEEEcCCceeeeccEEEEccCCCCCcc
Q 014821 330 FYDKVEEGSIILKKSQDFSFCED--GIVVDGQTTPLKTDLVILATGFKGDVK 379 (418)
Q Consensus 330 ~~~~~~~~~v~~~~~~v~~~~~~--~v~~~~g~~~~~~D~Vi~atG~~~~~~ 379 (418)
+.+.+++.+++++.+.+..++.+ .|.+++|++ +.+|.||+|||.++...
T Consensus 65 l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~-i~~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 65 IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNT-VHYDYLMIATGPKLAFE 115 (437)
T ss_dssp CHHHHHTTTCEEECSCEEEEETTTTEEEETTSCE-EECSEEEECCCCEECGG
T ss_pred HHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCE-EECCEEEECCCCCcCcc
Confidence 34566667788888778888754 588899988 99999999999987743
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=75.70 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=68.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~-----------------------------------~~~~~~-- 197 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR-----------------------------------ASKIML-- 197 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS-----------------------------------SCTTHH--
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC-----------------------------------ccHHHH--
Confidence 3689999999999999999999999999999865220 001111
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+...++.++ .+.+++++.+++.+. +...|.+.+..++...++.||.||+|+|..
T Consensus 198 -~~~~~~~gV--~v~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2a87_A 198 -DRARNNDKI--RFLTNHTVVAVDGDT----------------------TVTGLRVRDTNTGAETTLPVTGVFVAIGHE 251 (335)
T ss_dssp -HHHHHCTTE--EEECSEEEEEEECSS----------------------SCCEEEEEEETTSCCEEECCSCEEECSCEE
T ss_pred -HHHhccCCc--EEEeCceeEEEecCC----------------------cEeEEEEEEcCCCceEEeecCEEEEccCCc
Confidence 123345677 788899999998644 222355544323444689999999999965
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.94 E-value=7.2e-06 Score=82.01 Aligned_cols=41 Identities=34% Similarity=0.628 Sum_probs=38.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+||+|||||++||++|..|++.|++|+|+|+++.+||....
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t 80 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS 80 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCE
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCccee
Confidence 79999999999999999999999999999999999987544
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-05 Score=77.13 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=72.8
Q ss_pred cEEEEcCCHHHHHHHHHHHhC--------------CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLK--------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~--------------~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
.++|||||++|+.+|..|+.. ..+|+++|..+.+-
T Consensus 219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------- 267 (502)
T 4g6h_A 219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------- 267 (502)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS-------------------------------
T ss_pred ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc-------------------------------
Confidence 699999999999999988753 35799999976431
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC-CCceeEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK-NHSTEVH 149 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i 149 (418)
+.+ ..++.+++.+..++.|+ +++++++|++++.+. ..+.....+ ....+++
T Consensus 268 ~~~--~~~~~~~~~~~L~~~GV--~v~~~~~v~~v~~~~------------------------~~~~~~~~dg~~~~~~i 319 (502)
T 4g6h_A 268 NMF--EKKLSSYAQSHLENTSI--KVHLRTAVAKVEEKQ------------------------LLAKTKHEDGKITEETI 319 (502)
T ss_dssp TTS--CHHHHHHHHHHHHHTTC--EEETTEEEEEECSSE------------------------EEEEEECTTSCEEEEEE
T ss_pred cCC--CHHHHHHHHHHHHhcce--eeecCceEEEEeCCc------------------------eEEEEEecCcccceeee
Confidence 112 25788899999999999 899999999997544 233322221 1123579
Q ss_pred EeCEEEEeeccC
Q 014821 150 QVDFVILCVGRF 161 (418)
Q Consensus 150 ~~d~vIlAtG~~ 161 (418)
.||.||.|+|..
T Consensus 320 ~ad~viwa~Gv~ 331 (502)
T 4g6h_A 320 PYGTLIWATGNK 331 (502)
T ss_dssp ECSEEEECCCEE
T ss_pred ccCEEEEccCCc
Confidence 999999999965
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-05 Score=71.48 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=70.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|.+.+.+++++++.+.+. ... .+
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------~~~---~~ 188 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR-----------------------------------AAP---ST 188 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB-----------------------------------SCH---HH
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC-----------------------------------CCH---HH
Confidence 3689999999999999999999999999999965220 001 22
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++...++.++ .+.+++++.+++... +....|.+. ..+|...++.+|.||+|+|..
T Consensus 189 ~~~~~~~~gv--~~~~~~~v~~i~~~~---------------------~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~ 243 (315)
T 3r9u_A 189 VEKVKKNEKI--ELITSASVDEVYGDK---------------------MGVAGVKVK-LKDGSIRDLNVPGIFTFVGLN 243 (315)
T ss_dssp HHHHHHCTTE--EEECSCEEEEEEEET---------------------TEEEEEEEE-CTTSCEEEECCSCEEECSCEE
T ss_pred HHHHHhcCCe--EEEeCcEEEEEEcCC---------------------CcEEEEEEE-cCCCCeEEeecCeEEEEEcCC
Confidence 3344456788 888899999998754 122335555 223455689999999999965
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.90 E-value=8.8e-06 Score=78.24 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=39.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++|+++|..|++.|.+|+|+|+++.+||....
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 379999999999999999999999999999999999998665
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.2e-05 Score=75.90 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred hhhccCcEEEeccC-ceeEec--CcEEEcCCceeeeccEEEEccCCCCC
Q 014821 332 DKVEEGSIILKKSQ-DFSFCE--DGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 332 ~~~~~~~v~~~~~~-v~~~~~--~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+++.+++++.+. +..++. ..|++++|++ +.+|.||+|||.++.
T Consensus 70 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~-~~yd~lvlAtG~~p~ 117 (385)
T 3klj_A 70 DWYEKNNIKVITSEFATSIDPNNKLVTLKSGEK-IKYEKLIIASGSIAN 117 (385)
T ss_dssp HHHHHTTCEEECSCCEEEEETTTTEEEETTSCE-EECSEEEECCCEEEC
T ss_pred HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCE-EECCEEEEecCCCcC
Confidence 45566789999885 878774 4588899998 999999999998765
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=69.99 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+|+|||+|.+|+++|..|+..+.. |+++.+..
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~ 36 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSL 36 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCC
Confidence 5799999999999999999998765 99999874
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=6.3e-05 Score=70.09 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=67.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.... ... .. ..
T Consensus 153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~----------------------------------~~~-~~---~~ 194 (314)
T 4a5l_A 153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF----------------------------------RAS-KT---MQ 194 (314)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC----------------------------------CSC-HH---HH
T ss_pred CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc----------------------------------ccc-ch---hh
Confidence 68999999999999999999999999999985411 011 11 11
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.......+. .......+..+.... ...-.+.+.+...+..+++.+|.|++|+|..
T Consensus 195 ~~~~~~~~~--~~~~~~~~~~i~~~~---------------------~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~-- 249 (314)
T 4a5l_A 195 ERVLNHPKI--EVIWNSELVELEGDG---------------------DLLNGAKIHNLVSGEYKVVPVAGLFYAIGHS-- 249 (314)
T ss_dssp HHHHTCTTE--EEECSEEEEEEEESS---------------------SSEEEEEEEETTTCCEEEEECSEEEECSCEE--
T ss_pred hhhhcccce--eeEeeeeeEEEEeee---------------------eccceeEEeecccccceeeccccceEecccc--
Confidence 222223344 455666777776654 1222344555445666899999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 250 -pn~~ 253 (314)
T 4a5l_A 250 -PNSK 253 (314)
T ss_dssp -ESCG
T ss_pred -cChh
Confidence 6554
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.5e-05 Score=78.31 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=71.4
Q ss_pred ccEEEEc--CCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVG--AGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG--~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|+||| +|+.|+.+|..|.+.|.+|+++++.+.+..... ......
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~--------------------------------~~~~~~ 571 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN--------------------------------NTFEVN 571 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG--------------------------------GGTCHH
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc--------------------------------cchhHH
Confidence 5799999 999999999999999999999999764321100 012244
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+.+++.++ ++..+++|++++.+. ..+.. ..++...++.||.||+|+|..
T Consensus 572 ~l~~~l~~~GV--~i~~~~~V~~i~~~~------------------------~~v~~--~~~~~~~~i~aD~VV~A~G~~ 623 (690)
T 3k30_A 572 RIQRRLIENGV--ARVTDHAVVAVGAGG------------------------VTVRD--TYASIERELECDAVVMVTARL 623 (690)
T ss_dssp HHHHHHHHTTC--EEEESEEEEEEETTE------------------------EEEEE--TTTCCEEEEECSEEEEESCEE
T ss_pred HHHHHHHHCCC--EEEcCcEEEEEECCe------------------------EEEEE--ccCCeEEEEECCEEEECCCCC
Confidence 56666777898 899999999997543 22322 222344689999999999954
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-05 Score=69.05 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+|+|||+|.+|+.+|..|...+.. |+++.++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCC
Confidence 4799999999999999999998765 99999754
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00019 Score=73.55 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=71.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+++++. .+. ..+ ..++..++
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l-------------------------------~~~--d~~~~~~~ 332 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL-------------------------------RGF--DQQMAEKV 332 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS-------------------------------TTS--CHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc-------------------------------CcC--CHHHHHHH
Confidence 57999999999999999999999999999985 110 001 14567777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEc-----CCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFE-----GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
.+..++.|+ .+.+++.+..+... . +. ..+...+.+... ++....+.+|.||+|+
T Consensus 333 ~~~l~~~gv--~i~~~~~v~~v~~~~~~~~~--~~----------------~~~~~~v~~~~~-~g~~~~~~~D~vi~a~ 391 (598)
T 2x8g_A 333 GDYMENHGV--KFAKLCVPDEIKQLKVVDTE--NN----------------KPGLLLVKGHYT-DGKKFEEEFETVIFAV 391 (598)
T ss_dssp HHHHHHTTC--EEEETEEEEEEEEEECCBTT--TT----------------BCCEEEEEEEET-TSCEEEEEESEEEECS
T ss_pred HHHHHhCCC--EEEECCeEEEEEeccccccc--cC----------------CCceEEEEEEeC-CCcEEeccCCEEEEEe
Confidence 778888898 88988888887653 1 00 012344443221 2333456699999999
Q ss_pred ccC
Q 014821 159 GRF 161 (418)
Q Consensus 159 G~~ 161 (418)
|..
T Consensus 392 G~~ 394 (598)
T 2x8g_A 392 GRE 394 (598)
T ss_dssp CEE
T ss_pred CCc
Confidence 965
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=73.98 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|.+|+.+|..|++.+.+|+++++.+.+. . . .+
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----------------------------------~--~---~~ 395 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----------------------------------A--D---QV 395 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----------------------------------S--C---HH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----------------------------------c--C---HH
Confidence 3689999999999999999999999999999865221 0 0 23
Q ss_pred HHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+.+ .++ .+..++.++++..+. +....|.+.+..+|...++.+|.||+|+|..
T Consensus 396 l~~~l~~~~gV--~v~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 452 (521)
T 1hyu_A 396 LQDKVRSLKNV--DIILNAQTTEVKGDG---------------------SKVVGLEYRDRVSGDIHSVALAGIFVQIGLL 452 (521)
T ss_dssp HHHHHTTCTTE--EEECSEEEEEEEECS---------------------SSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHHHhcCCCc--EEEeCCEEEEEEcCC---------------------CcEEEEEEEeCCCCceEEEEcCEEEECcCCC
Confidence 3444444 477 788999999998654 1222466665444666789999999999954
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=79.10 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=40.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.+||+|||+|.+|+++|..|++.|.+|+++|+++.+||.+..
T Consensus 19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence 4589999999999999999999999999999999999997665
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=78.17 Aligned_cols=42 Identities=12% Similarity=0.297 Sum_probs=39.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 589999999999999999999999999999999999998766
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=80.09 Aligned_cols=41 Identities=39% Similarity=0.491 Sum_probs=38.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
.+||+|||||++||++|..|++.|.+|+|+|+++++||.+.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence 57999999999999999999999999999999999998654
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.1e-05 Score=78.20 Aligned_cols=42 Identities=38% Similarity=0.597 Sum_probs=38.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++|+++|..|.+.|. +|+|+|+++.+||.+..
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 5799999999999999999999998 89999999999997765
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=7e-05 Score=72.89 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCHHHHHHHHhh---hcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHh
Q 014821 204 KRVTVVGLQKSALDIAMECTT---ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLAT 280 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~---~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (418)
++|+|||+|.+|+.+|..|.+ .+.. |+++.+++.+.......+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~~~~~~------------------------------- 47 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFRPALPH------------------------------- 47 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEECCSSCC-------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceeccchhh-------------------------------
Confidence 589999999999999999998 5554 999999875322111000
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEecC--cEEEcC
Q 014821 281 MLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCED--GIVVDG 358 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~--~v~~~~ 358 (418)
..... .....+...+.+.+++.+++++.+.+..++.+ .|.+++
T Consensus 48 ---------------------------~~~~~--------~~~~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~ 92 (409)
T 3h8l_A 48 ---------------------------VAIGV--------RDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTK 92 (409)
T ss_dssp ---------------------------CCSSC--------CCCCCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEEC
T ss_pred ---------------------------cccCC--------cCHHHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEcc
Confidence 00000 00001122344566666788888777777654 577776
Q ss_pred Cc---eeeeccEEEEccCCCCCcc
Q 014821 359 QT---TPLKTDLVILATGFKGDVK 379 (418)
Q Consensus 359 g~---~~~~~D~Vi~atG~~~~~~ 379 (418)
|+ ..+.+|.||+|||.++...
T Consensus 93 g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 93 PDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp TTSCEEEEECSEEEECCCCEECGG
T ss_pred CCcccceeeCCEEEECCCCCcCcc
Confidence 64 2389999999999987643
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.1e-05 Score=73.18 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=32.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++||+|||||++|+++|+.|+++|.+|+|||+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 5899999999999999999999999999999965
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.5e-05 Score=75.66 Aligned_cols=33 Identities=36% Similarity=0.543 Sum_probs=31.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+||+|||||++|+++|..|+++|++|+|||+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 699999999999999999999999999999975
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.54 E-value=5.7e-05 Score=78.36 Aligned_cols=42 Identities=36% Similarity=0.583 Sum_probs=38.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++|+++|..|.+.|++|+|+|+++.+||.+..
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 148 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence 479999999999999999999999999999999999986554
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.52 E-value=6.7e-05 Score=79.53 Aligned_cols=42 Identities=36% Similarity=0.583 Sum_probs=38.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++||++|..|++.|++|+|||+++.+||.+..
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 319 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 319 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceee
Confidence 479999999999999999999999999999999999986443
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.5e-05 Score=72.54 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC------CceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG------FHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~------~~v~iie~~~ 36 (418)
+||+|||||++|+++|+.|+++| .+|+|+|+..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 48999999999999999999997 8999999975
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=9.6e-05 Score=70.57 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=32.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||++|+.+|..|++.|.+|+|+|+++..
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~ 36 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR 36 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence 79999999999999999999999999999997744
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00037 Score=69.00 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+.+|..|++.+.+|+++++++
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~ 230 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT 230 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence 3689999999999999999999999999999875
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00066 Score=63.16 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 178 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD 178 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence 3689999999999999999999999999999975
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00041 Score=72.70 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=51.1
Q ss_pred ccEEEEc--CCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVG--AGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG--~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|+||| ||..|+.+|..|++.|.+|+++++.+ +.... .++. . ..
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~-----------------------------~~~~--~-~~ 575 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYM-----------------------------HFTL--E-YP 575 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHH-----------------------------HHTT--C-HH
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccc-----------------------------cccc--c-HH
Confidence 5899999 99999999999999999999999965 32100 0000 1 23
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
.+.+..++.|+ ++.+++++.+++.
T Consensus 576 ~~~~~l~~~GV--~i~~~~~v~~i~~ 599 (729)
T 1o94_A 576 NMMRRLHELHV--EELGDHFCSRIEP 599 (729)
T ss_dssp HHHHHHHHTTC--EEECSEEEEEEET
T ss_pred HHHHHHHhCCC--EEEcCcEEEEEEC
Confidence 45555667788 8999999999874
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=68.23 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
.++|+|||+|.+|+.+|..|++.+.+ |+++++.+
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~ 246 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 246 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence 46899999999999999999999998 99999864
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00063 Score=73.49 Aligned_cols=93 Identities=19% Similarity=0.141 Sum_probs=68.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. ..
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-------------------------------------~~----- 322 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-------------------------------------AA----- 322 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-------------------------------------HH-----
T ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-------------------------------------hh-----
Confidence 689999999999999999999999999999965220 01
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEc-CCCCcccccccccCCCCCCCCCCCceEEEEec--CC--CCceeEEEeCEEEEee
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFE-GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED--AK--NHSTEVHQVDFVILCV 158 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~--~~~~~~i~~d~vIlAt 158 (418)
.+.+++.++ .+++++.+.++... . +....|.+.+ .. +|...++.||.||+|+
T Consensus 323 ~~~l~~~GV--~v~~~~~v~~i~~~~~---------------------~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~ 379 (965)
T 2gag_A 323 AAQAVADGV--QVISGSVVVDTEADEN---------------------GELSAIVVAELDEARELGGTQRFEADVLAVAG 379 (965)
T ss_dssp HHHHHHTTC--CEEETEEEEEEEECTT---------------------SCEEEEEEEEECTTCCEEEEEEEECSEEEEEC
T ss_pred HHHHHhCCe--EEEeCCEeEEEeccCC---------------------CCEEEEEEEeccccCCCCceEEEEcCEEEECC
Confidence 234566788 89999999999873 2 1222355543 10 1334689999999999
Q ss_pred ccC
Q 014821 159 GRF 161 (418)
Q Consensus 159 G~~ 161 (418)
|..
T Consensus 380 G~~ 382 (965)
T 2gag_A 380 GFN 382 (965)
T ss_dssp CEE
T ss_pred CcC
Confidence 954
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=70.37 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|. +|+++++++
T Consensus 265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~ 298 (456)
T 2vdc_G 265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD 298 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence 689999999999999999999987 599999865
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00028 Score=66.62 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+.+|..|++.+ +++++.+..
T Consensus 163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 368999999999999999999988 699998863
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=60.79 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.-.|+|||+|+.|+.+|..|+..+.. |+++.+.
T Consensus 6 ~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~ 38 (304)
T 4fk1_A 6 YIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNN 38 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECS
T ss_pred CcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCC
Confidence 45799999999999999999887764 9999875
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00093 Score=65.96 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=29.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--------------------CC-ceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--------------------GF-HPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--------------------~~-~v~iie~~~~ 37 (418)
.++|+|||+|..|+.+|..|++. +. +|+|++++..
T Consensus 147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence 36899999999999999999874 54 8999999763
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00061 Score=68.76 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus 178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 47899999999999999999999999999999874
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0004 Score=66.66 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=38.1
Q ss_pred CcchhhhhccCcEEEeccC-ceeEecC-cEEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEEGSIILKKSQ-DFSFCED-GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~-v~~~~~~-~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
...+.+.+++.+++++.+. +..++.+ .|++++|++ +.+|.||.|+|..+.
T Consensus 110 ~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~-~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 110 HDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEV-LEADLIVGADGVGSK 161 (379)
T ss_dssp HHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCE-EECSEEEECCCTTCH
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCE-EEcCEEEECCCccHH
Confidence 3345566666778998886 6666533 677888988 999999999999865
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0013 Score=64.88 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHH--------------------hCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLL--------------------LKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~--------------------~~~~-~v~iie~~~ 36 (418)
.++|+|||+|..|+.+|..|+ +.+. +|+|++++.
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 368999999999999999999 5677 799999975
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00091 Score=64.56 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=36.7
Q ss_pred cchhhhhccC-cEEEeccC-ceeEec--C----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEEG-SIILKKSQ-DFSFCE--D----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~~-~v~~~~~~-v~~~~~--~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..+.+.+++. +++++.+. +..++. + .|++++|++ +++|.||.|+|..+.
T Consensus 111 ~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~-~~ad~vV~AdG~~s~ 167 (399)
T 2x3n_A 111 RLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRV-LRPRVVVGADGIASY 167 (399)
T ss_dssp HHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCE-EEEEEEEECCCTTCH
T ss_pred HHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCE-EECCEEEECCCCChH
Confidence 3445666665 79998886 766653 2 466778887 999999999999865
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00035 Score=69.88 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=32.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
....+|+|||+|.+|+.+|..|...|.. |+++.+.+.
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~ 126 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIK 126 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSS
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccc
Confidence 3467899999999999999999998764 999998764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00077 Score=69.98 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEE
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIV 31 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~i 31 (418)
.++|+|||||..|+.+|..|++.|.++++
T Consensus 494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv 522 (671)
T 1ps9_A 494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ 522 (671)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence 36899999999999999999998876543
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00065 Score=66.26 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|+.+|..|++.|.. |+++.+.+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 46899999999999999999998765 999998763
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00018 Score=74.50 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--------CceEEEeeCC-CC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--------FHPIVFEARS-DI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--------~~v~iie~~~-~~ 38 (418)
.++|+|||||++||++|..|.+.| ++|+|||+++ ++
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 478999999999999999999988 8999999998 88
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0025 Score=69.36 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
.+|+|||||..|+.+|..|++.|. +|+++++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 489999999999999999999996 899999964
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=66.60 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=37.7
Q ss_pred cchhhhhccCcEEEeccC-ceeEec--C---cEEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEEGSIILKKSQ-DFSFCE--D---GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~-v~~~~~--~---~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..+.+.+++.+++++.+. +..+.. + +|.+++|++ +.+|.||+|+|..+.
T Consensus 224 ~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~-i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 224 EKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE-IKSRHVVLAVGHSAR 278 (549)
T ss_dssp HHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE-EECSCEEECCCTTCH
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE-EECCEEEECCCCChh
Confidence 345566677789999886 666642 2 277888988 999999999999875
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0033 Score=63.47 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.++|+|||+|++|+.+|..|++.+.+|++|++.+.
T Consensus 185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 46899999999999999999999999999999874
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00055 Score=69.23 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
..+|++|||+|++|+.+|.+|++.|.+|+|+|+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 358999999999999999999999999999999763
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=63.88 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=36.5
Q ss_pred cchhhhhccCcEEEeccC-ceeEe--cCc---EEEcCCceeeeccEEEEccCCCC
Q 014821 328 EKFYDKVEEGSIILKKSQ-DFSFC--EDG---IVVDGQTTPLKTDLVILATGFKG 376 (418)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~-v~~~~--~~~---v~~~~g~~~~~~D~Vi~atG~~~ 376 (418)
+.+.+.+++.+|+++.+. +..+. ++. |.+++|++ +.+|.||+|||..+
T Consensus 138 ~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~-i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 138 DALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEV-LETNHVVIAVGGKS 191 (447)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCE-EECSCEEECCCCSS
T ss_pred HHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCE-EECCEEEECCCCCc
Confidence 345566677789998876 66664 333 67788887 99999999999887
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00068 Score=68.12 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=32.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~~ 37 (418)
.+|+||||+|++|+.+|.+|++ .+.+|+|||+...
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 4899999999999999999998 6789999999764
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=63.70 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 46899999999999999999998765 999998764
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.001 Score=66.50 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
..+|++|||+|++|+.+|..|++.+.+|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 46899999999999999999999999999999987543
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00093 Score=67.88 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~ 37 (418)
.+|+||||||.||+.+|.+|++.+ .+|+|||+.+.
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 589999999999999999999987 69999999875
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00075 Score=68.09 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+|+||||+|.+|+.+|.+|++ +.+|+|+|+....
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 4799999999999999999999 9999999998654
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0032 Score=57.83 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhh-cCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTA-NGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~-~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+.+|..|++. +. +|+++.+.+.
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~---~V~viEk~~~ 74 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVS 74 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSS
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCC---eEEEEECCCC
Confidence 45799999999999999999985 65 4999998763
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0027 Score=61.54 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+.+|..|++.|.. |+++.+.+.
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~ 38 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKK 38 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 4699999999999999999998765 999998763
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.002 Score=62.42 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=31.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+..+|+|||+|.+|+-+|..|+..|.. |+++.|.+.
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~ 57 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKE 57 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 4467899999999999999999998765 999998763
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0019 Score=65.34 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+|+|||+|.+|+.+|..|.+.+.. |+++.+++
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~ 54 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAAS 54 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCC
Confidence 35799999999999999999987765 99999865
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.019 Score=58.21 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+.+|..|++.|.. |.++.+.+.
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~~~ 160 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKEPV 160 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 35799999999999999999998865 999998763
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0016 Score=66.38 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSDI 38 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~~~ 38 (418)
..+|++|||+|++|+.+|..|++ .+.+|+++|+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 46899999999999999999999 79999999997643
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.002 Score=65.73 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=40.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||+|..|..+|..|++.|++|+++|+++..||.|..
T Consensus 8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~ 49 (650)
T 1vg0_A 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 49 (650)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence 589999999999999999999999999999999999998776
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=66.45 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~ 36 (418)
.+|+||||||.||+.+|.+|++. +.+|+|||+.+
T Consensus 19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 58999999999999999999974 78999999987
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0019 Score=64.59 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+|++|||+|++|+.+|..|++.+.+|+|+|+...
T Consensus 11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 58999999999999999999999999999999764
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0092 Score=60.96 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|..|+++|..|+..|.. |.++.++.
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~ 61 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNI 61 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCG
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecc
Confidence 35799999999999999999998765 99999874
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0044 Score=60.07 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+|+|||+|.+|.-+|..|++.|.. |+++.+..
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~---V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFK---VKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCC
Confidence 5799999999999999999988765 99999875
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.019 Score=57.16 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=29.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
-++|+|||+|.+|+.++..|++. +.+|+++-|.+
T Consensus 246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 36899999999999999999875 67899999875
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0046 Score=63.03 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...+|+|||||.+|.-+|..|+..|.. |+++.+.+
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~ 56 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSA 56 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCC
Confidence 357899999999999999999998764 99999874
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=65.37 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~~~ 38 (418)
.+|++|||||.+|+.+|.+|++ .+.+|+|||+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 4899999999999999999998 68999999998654
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0073 Score=58.20 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|+-+|..|...|.. |+++.|.+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 46899999999999999999988765 999998764
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0068 Score=61.87 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
....|+|||+|..|+++|..|+..|.. |.++.++.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~ 54 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDL 54 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCG
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecc
Confidence 346899999999999999999998765 99999874
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.008 Score=61.17 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|..|+++|..++..|.. |.++.++.
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~ 60 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNA 60 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCG
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecc
Confidence 35799999999999999999998765 99999874
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0064 Score=59.34 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|.+|+-+|..|++.|.. +|+++.+..
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~--~V~vlE~~~ 40 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYT--NVTVLDPYP 40 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC--cEEEEeCCC
Confidence 35799999999999999999998861 399999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0057 Score=50.41 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
|.+.+|+|+|+|..|..++..|.+.|.+++++|++
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 78889999999999999999999999999999996
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0074 Score=57.92 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 4699999999999999999998865 999998763
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0098 Score=55.93 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhh---hcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTT---ANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~---~~~~~~~V~~~~r~~ 239 (418)
++|+|||+|.+|+-+|..|.+ .|. +|+++.+++
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCC
Confidence 379999999999999999988 654 499998864
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0035 Score=63.31 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~ 38 (418)
.+|++|||+|.+|+.+|.+|++. +.+|+++|+....
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 48999999999999999999997 8999999998644
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.015 Score=55.72 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=29.8
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|.+|.-+|..|...|.. |+++.|++.
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~~~ 35 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIK---VTIYERNSA 35 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 799999999999999999998865 999998764
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0051 Score=62.41 Aligned_cols=35 Identities=26% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..|+..|.. |+++.+.+.
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~ 83 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVE 83 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCC
Confidence 35799999999999999999998865 999998764
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.055 Score=54.74 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..|++.|.. |+++.+.+.
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~~~ 155 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAPF 155 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 34699999999999999999998865 999998763
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.025 Score=53.84 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+|+|||+|.+|+-+|..|+++|.. |+++.+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G~~---V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRGEE---VTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 35799999999999999999998765 99999864
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.051 Score=51.09 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|+++|.. |+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~---V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHE---VLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCC
Confidence 4799999999999999999998765 99999875
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0074 Score=60.38 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=29.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+|+|||+|.+|+-+|..|+..|.. |+++.+..
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCC
Confidence 5799999999999999999988765 99999875
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.067 Score=54.19 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|..|+.+|..|...|.. |+++.+.+.
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~---v~~~e~~~~ 160 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEPI 160 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCC---EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 45799999999999999999988765 999998764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0083 Score=48.56 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+|+|+|..|..+|..|.+.|++++++|++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999964
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.027 Score=54.02 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhh-hc-CCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTT-AN-GLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~-~~-~~~~~V~~~~r~~ 239 (418)
..+|+|||+|.+|+-+|..|++ .| .. |+++.+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~---V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNHGITN---VAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCC---EEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHhcCCCc---EEEEeCCC
Confidence 3579999999999999999999 87 55 99999875
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.04 Score=57.21 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|.+|+-+|..|+++|.. |+++.+..
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~---V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAV---VTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCC---EEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCc---EEEEeCCC
Confidence 46899999999999999999998865 99999864
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.068 Score=53.27 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|..|+-+|..|++.|.. |.++.+.+.
T Consensus 42 ~DVvVVGaG~AGl~AA~~aa~~G~~---V~vlEk~~~ 75 (510)
T 4at0_A 42 ADVVVAGYGIAGVAASIEAARAGAD---VLVLERTSG 75 (510)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 4699999999999999999998765 999998763
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.025 Score=56.32 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
....|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~ 46 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQ 46 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 356899999999999999999998865 999998764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.01 Score=47.68 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=30.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|..|..++..|.+.|.+++++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999853
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.027 Score=58.29 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|.+|+-+|..|+++|.. |+++.+..
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~G~~---V~vlEk~~ 305 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRRGWQ---VTLYCADE 305 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 46899999999999999999998764 99999864
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.028 Score=55.99 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+...|+|||+|.+|+-+|..|+..|.. |+++.+.+.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 456799999999999999999998865 999998764
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=55.02 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|.+|+-+|..|++.|.. |+++.+..
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~---V~llE~~~ 50 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGT 50 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCC
Confidence 35799999999999999999998765 99999864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.013 Score=48.44 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|..|..++..|.+.|.+|+++|++.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.031 Score=56.21 Aligned_cols=34 Identities=21% Similarity=0.065 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+|+|||+|.+|+-+|..|.+.|.. |+++.+++
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~ 49 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAG 49 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCC
Confidence 35799999999999999999998765 99999865
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.018 Score=56.50 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|.-+|..|+..|.. |+++.+.+.
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~ 40 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPW 40 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 4799999999999999999988765 999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=46.87 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+|+|||+|..|..+|..|.+.|++++++|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3579999999999999999999999999999964
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.016 Score=46.61 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+|+|+|..|..++..|.+.|.+++++|++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999999853
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.046 Score=54.82 Aligned_cols=35 Identities=26% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..|...|.. |+++.|.+.
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~~~ 39 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPG 39 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 35899999999999999999998765 999998764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.024 Score=49.84 Aligned_cols=35 Identities=29% Similarity=0.207 Sum_probs=31.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||+|.+|...+..|...|.. |+++.+.
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~ 63 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPT 63 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCC
Confidence 5689999999999999999999999876 9998863
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.017 Score=44.67 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
+++|+|+|+|..|..++..|.+.| .++++++++.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 468999999999999999999999 8999999863
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.016 Score=58.24 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=36.3
Q ss_pred cchhhhhccCcEEEeccCceeEec--C----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEEGSIILKKSQDFSFCE--D----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~v~~~~~--~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..+.+.+++.+++++.+.+..+.. + +|.+++|++ +.+|.||.|+|....
T Consensus 169 ~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRT-LEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCE-ECCSEEEECCGGGCC
T ss_pred HHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcE-EEeCEEEECCCCchh
Confidence 344556666678888887766642 2 366778887 999999999998765
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.02 Score=52.52 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.++|+|||+|.-|..+|..|++.|++|+++|++.
T Consensus 2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 456899999999999999999999999999999864
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.025 Score=56.63 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=35.2
Q ss_pred chhhhhcc-CcEEEeccCceeEec--C----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 329 KFYDKVEE-GSIILKKSQDFSFCE--D----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 329 ~~~~~~~~-~~v~~~~~~v~~~~~--~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+++ .+++++.+.+..+.. + +|.+++|.+ +.+|.||.|+|....
T Consensus 180 ~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~-i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 180 LLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGE-ISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCE-EECSEEEECSGGGCC
T ss_pred HHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCE-EEcCEEEECCCcchH
Confidence 34455565 678888887776642 2 356678888 999999999999755
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.025 Score=53.15 Aligned_cols=35 Identities=34% Similarity=0.326 Sum_probs=32.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
|..++|+|||+|.-|.+.|..|++.|.+|+++++.
T Consensus 1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 77789999999999999999999999999999984
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.028 Score=47.66 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=31.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~ 36 (418)
..+|+|||+|..|..+|..|.+. |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 35799999999999999999999 99999999964
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.032 Score=53.81 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCC-eEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENP-CTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~-V~~~~r~~~ 240 (418)
..+|+|||+|.+|+-+|..|...| .+ |+++.+.+.
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G---~~~v~v~E~~~~ 39 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAG---IGKVTLLESSSE 39 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT---CSEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC---CCeEEEEECCCC
Confidence 358999999999999999998876 37 999998764
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.044 Score=54.57 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=36.0
Q ss_pred cchhhhhccCcEEEeccCceeEec--Cc----EEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEEGSIILKKSQDFSFCE--DG----IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~v~~~~~--~~----v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..+.+.+++.+++++.+.+..+.. ++ |.+++|++ +.+|.||.|+|....
T Consensus 177 ~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~-~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 177 RYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGE-ISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCE-EECSEEEECCGGGCC
T ss_pred HHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCE-EEcCEEEECCCcchH
Confidence 344555666678888887666653 23 66778887 999999999999755
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.39 Score=48.66 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|++.|.. |.++.+...
T Consensus 8 ~DVvVVGaG~AGl~AA~~la~~G~~---V~vlEK~~~ 41 (588)
T 2wdq_A 8 FDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP 41 (588)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 4799999999999999999988765 999998753
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.078 Score=56.27 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+|+|||+|.+|+-+|..|+++|. .+|+++.+..
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G~--~~V~vlE~~~ 38 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRGW--NNITVLDQGP 38 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC--CCEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEeCCC
Confidence 3579999999999999999999886 1399999875
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.035 Score=52.43 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=31.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|++++|+|||+|..|...|..|++.|.+|++++++.
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 556799999999999999999999999999999853
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.036 Score=51.24 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.+++|+|||+|..|...|..|++.|.+|++++++.
T Consensus 1 ~~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 1 SNAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 445789999999999999999999999999999853
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.048 Score=47.93 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.+.|+|||||..|...+..|.+.|.+|+|+++.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4578999999999999999999999999999985
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.046 Score=50.48 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|.|||+|.-|..+|..|++.|++|+++|++.
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4679999999999999999999999999999964
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.053 Score=49.30 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=33.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|++++|+|.|+|..|..++..|.+.|.+|+++.++.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 778899999999999999999999999999999864
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.023 Score=49.91 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEE-EeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIV-FEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~i-ie~~~ 36 (418)
|++++|.|||+|.-|.++|..|.+.|+++++ ++++.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 5567999999999999999999999999998 77753
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.16 Score=50.91 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|++ |.. |.++.+...
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~---V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQ---VIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSC---EEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCc---EEEEECCCC
Confidence 469999999999999999988 654 999998763
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.046 Score=47.79 Aligned_cols=32 Identities=9% Similarity=0.363 Sum_probs=30.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|||+|..|..+|..|.+.|++++++|++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999999999999964
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.056 Score=50.45 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
|++++|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 777899999999999999999999988 999999864
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.05 Score=53.29 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|. ++|+|||+|..|+.+|..|++.|++|+++|++.
T Consensus 1 M~-mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 1 MS-LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp -C-CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CC-CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 54 589999999999999999999999999999875
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.053 Score=53.40 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC-CC-ceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~-~~-~v~iie~~~~ 37 (418)
..++|+|||+|.-|+.+|..|++. |+ +|+++|++..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 457899999999999999999999 99 9999999764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.054 Score=49.16 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+.|+|||||-.|...+..|.+.|.+|+|+++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 35789999999999999999999999999999853
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.051 Score=53.11 Aligned_cols=37 Identities=30% Similarity=0.656 Sum_probs=33.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+.++|+|||.|.+|+++|..|.++|++|+++|.+...
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~ 40 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP 40 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 4578999999999999999999999999999987643
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.072 Score=49.66 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=32.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
|++++|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 777899999999999999999999888 999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.059 Score=52.83 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||.|.+|+++|..|.++|++|++.|.+.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 4789999999999999999999999999999864
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.069 Score=50.60 Aligned_cols=34 Identities=35% Similarity=0.369 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+|||+|.-|.++|..|++.|.+|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5689999999999999999999999999999964
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.95 Score=45.96 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|++.|.. .+|.++.+..
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~-~~V~vlEk~~ 40 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPN-AKIALISKVY 40 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTT-CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCC-CcEEEEeCCC
Confidence 3699999999999999999998721 2499999875
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.13 Score=48.36 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhh--cCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTA--NGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~--~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..|+.. +. +|.++.+...
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~ 115 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVA 115 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSS
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCc
Confidence 45799999999999999999987 54 4999998753
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.07 Score=47.95 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=32.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC----CceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG----FHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~----~~v~iie~~~ 36 (418)
|++++|.|||+|.-|.+.|..|++.| .+|++++++.
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~ 41 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK 41 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence 77789999999999999999999988 6899999875
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.075 Score=53.94 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=29.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhh------cCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTA------NGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~------~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|... +.. |.++.+.+.
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~~~ 75 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKAAH 75 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCCCC
Confidence 5799999999999999999987 654 999998753
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.083 Score=48.20 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC---ceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF---HPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~---~v~iie~~~ 36 (418)
|++++|.|||+|.-|.+.+..|.+.|+ +|+++|++.
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 777899999999999999999999998 899999864
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.078 Score=49.28 Aligned_cols=35 Identities=20% Similarity=0.485 Sum_probs=31.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
|+.++|+|||+|..|.++|..|+..++ +++++|.+
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 345789999999999999999999999 99999996
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.074 Score=49.51 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=30.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
++|+|||+|.-|.+.|..|++.|.+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 67999999999999999999999999999995
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.072 Score=50.47 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.++|.|||.|.-|..+|..|++.|++|+++|++.
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 456799999999999999999999999999999864
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.077 Score=52.44 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.+++|.|||+|.-|..+|..|++.|++|++++++.
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~ 48 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR 48 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 678999999999999999999999999999999864
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.088 Score=48.79 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|.|||.|.-|..+|..|++.|++|+++|++.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5789999999999999999999999999999965
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.096 Score=46.69 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..++|.|||+|.-|.++|..|++.|++|++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35789999999999999999999999999999864
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=92.96 E-value=1.5 Score=44.72 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|++.|.. |.++.+..
T Consensus 19 ~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~~ 51 (621)
T 2h88_A 19 FDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKLF 51 (621)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSC
T ss_pred CCEEEECccHHHHHHHHHHHHCCCc---EEEEeccC
Confidence 4799999999999999999988765 99999865
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.091 Score=51.91 Aligned_cols=36 Identities=14% Similarity=0.403 Sum_probs=32.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.++|.|||+|.-|...|..|++.|++|+++|++.
T Consensus 3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 346789999999999999999999999999999864
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.1 Score=45.36 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||+|..|.++|..|++.|.+|++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~ 52 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD 52 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999865
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.088 Score=48.96 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=32.0
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
|. +++|+|||+|..|.++|..|+..|+ +++++|++.
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 55 3689999999999999999999998 999999864
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.08 Score=49.11 Aligned_cols=33 Identities=36% Similarity=0.366 Sum_probs=30.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||+|.-|.+.|..|++.|.+|++++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 579999999999999999999999999999953
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.099 Score=48.57 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=31.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|.-|...|..++..|++|+++|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.11 Score=49.30 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+|||||..|..++..+.+.|++++++|.++
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3789999999999999999999999999999865
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.093 Score=51.59 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..++|.|||+|.-|..+|..|++.|++|+++|++.
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35689999999999999999999999999999864
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.1 Score=51.03 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=32.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..++|.|||+|.-|...|..|++.|++|+++|++.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 87 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE 87 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence 35789999999999999999999999999999964
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.082 Score=48.61 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=32.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
+++|.|||.|.-|...|..|++.|++|+++|++..
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999999764
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.21 Score=49.53 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 87 ASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 87 ~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++.|+ .+++++.|.++.... ....+...++ .++.+|.||+|+|..
T Consensus 267 l~~~GV--~v~~~~~v~~i~~~~----------------------~v~~v~~~~g-----~~i~aD~Vv~a~G~~ 312 (493)
T 1y56_A 267 LERWGI--DYVHIPNVKRVEGNE----------------------KVERVIDMNN-----HEYKVDALIFADGRR 312 (493)
T ss_dssp HHHHTC--EEEECSSEEEEECSS----------------------SCCEEEETTC-----CEEECSEEEECCCEE
T ss_pred HHhCCc--EEEeCCeeEEEecCC----------------------ceEEEEeCCC-----eEEEeCEEEECCCcC
Confidence 345688 788999999987543 2334554444 589999999999965
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.057 Score=51.30 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=30.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+|.-|.+.|..|++.|++|++++++.
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 389999999999999999999999999999864
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.099 Score=49.67 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
+..+|||+|||.+|+.+|..|...|. +++++|++
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35689999999999999999999998 89999996
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.066 Score=47.31 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=29.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|+-+|..|+..|.. |+++.+++.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 599999999999999999999876 999998753
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.62 E-value=1.4 Score=43.19 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=27.6
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|+|||+|..|+-+|..|.+.|.. |.++.+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~---V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKK---VTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeCC
Confidence 389999999999999999987754 9999986
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.13 Score=43.79 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=32.8
Q ss_pred CCCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..+.|+|+|| |..|..++..|.+.|.+|++++++.
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 66678999998 9999999999999999999999864
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.12 Score=48.20 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=30.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
+++|+|||+|..|..+|..|+..++ +++++|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 5689999999999999999999988 999999853
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.095 Score=50.85 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=30.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.-|+.+|..|++ |++|+++|++.
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 4689999999999999999998 99999999865
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.11 Score=47.16 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
+|.|||+|..|...|..|++.|.+|++++++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 699999999999999999999999999998753
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.1 Score=48.61 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC----CceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG----FHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~----~~v~iie~~~ 36 (418)
|++++|.|||+|.-|.+.|..|.+.| .+|++++++.
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 45678999999999999999999998 7899999864
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.062 Score=50.70 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-------CceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-------~~v~iie~~~ 36 (418)
|.+++|+|||+|.-|.+.|..|++.| .+|++++++.
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~ 48 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE 48 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCC
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcCh
Confidence 55678999999999999999999988 8999999865
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.12 Score=48.28 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=30.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|..+|..|+..|+ +++++|.+.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 589999999999999999999998 999999964
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.1 Score=51.56 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|+-|+.+|..|++.|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.1 Score=49.44 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=31.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
+..+|||+|||.+|..+|..|...|. +++++|+.
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 45789999999999999999999998 79999996
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.11 Score=48.15 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=30.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
++|+|||+|..|..+|..|+..|. +|+++|++
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 589999999999999999999998 99999985
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.14 Score=44.68 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||+|..|...+..|.+.|.++++++++.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3679999999999999999999999999999863
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.14 Score=48.20 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=31.4
Q ss_pred CCCccEEEEcC-CHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 1 MEKKQIAIVGA-GVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 1 m~~~~vvIIG~-G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
|..++|+|||+ |..|.++|..++..|. +++++|.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 56789999997 9999999999999885 89999985
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.12 Score=47.62 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|.|||.|.-|...|..|++.|++|+++|++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=92.27 E-value=0.13 Score=50.64 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=33.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.+++|.|||.|.-|..+|..|+++|++|++++++.
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 567899999999999999999999999999999975
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.23 E-value=0.13 Score=47.92 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=30.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+++|+|||+|..|..+|..|+..+. +++++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999887 899999853
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.14 Score=49.16 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|.+|+.++..|...|.+|+++|++.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3589999999999999999999999999999974
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.091 Score=51.93 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
+++|+|||+|..|+..|..|++. |++|+++|++.
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 46899999999999999999998 78999999864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.12 Score=50.36 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+|+|||.|+.||.+|..|++.|++|+.+|.+.
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4689999999999999999999999999999865
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.14 Score=52.60 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhh-hcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTT-ANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~-~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|+. .|.. |+++.+.+.
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~~~ 67 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQKEG 67 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 479999999999999999998 7765 999998763
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.15 Score=47.30 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|.|||+|..|...|..|.+.|.+|++++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4789999999999999999999999999999864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.13 Score=47.95 Aligned_cols=35 Identities=11% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
|..++|+|||+|..|.++|..|+..+. +++++|.+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 345689999999999999999998875 79999975
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.13 Score=48.22 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=30.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|.++|..|+..|+ +++++|.+.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 589999999999999999999988 999999864
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.15 Score=50.26 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.+++|.|||+|.-|..+|..|++.|++|++++++.
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 38 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT 38 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 666789999999999999999999999999999864
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.12 Score=47.95 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=30.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
+++|.|||.|.-|..+|..|++.|+ +|+++|++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4689999999999999999999999 99999995
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.13 Score=47.22 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=30.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||+|.-|.+.|..|++.|.+|++++++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 579999999999999999999999999999963
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.15 Score=49.77 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
..+|.|||.|+-|+.+|..|++.|++|+++|++...
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k 43 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK 43 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 368999999999999999999999999999998643
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.12 Score=47.08 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
|++++|.|||+|..|.+.|..|.+. +.+|+++|++.
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 41 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD 41 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 6678899999999999999999987 57899998864
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.14 Score=47.64 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||.|..|..+|..|++.|++|+++|++.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 3589999999999999999999999999999864
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.075 Score=42.99 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||+|..|..++..|...|.++++++++.
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 689999999999999999999999999999853
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=91.65 E-value=0.11 Score=51.03 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.2
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
|+ +++|+|||+|..|+..|..|++. |++|+++|++.
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 55 46899999999999999999998 78999999864
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.19 Score=46.41 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||.|.-|...|..|++.|++|+++|++.
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.14 Score=48.75 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999974
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.18 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
.++|.|||+|..|.+.|..|++.|+ +|+++|++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 4689999999999999999999999 899999864
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.17 Score=46.77 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=29.6
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+|+|||+|..|.++|..|+..|. +++++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 69999999999999999999998 899999853
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.13 Score=46.99 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||.|.-|...|..|++.|++|+++|++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999975
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.18 Score=46.03 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999975
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.14 Score=49.86 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|||+|..|+..|..|++.|++|+++|++.
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.2 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=30.5
Q ss_pred CccEEEEcCCHHHHH-HHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLL-ACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~-~a~~L~~~~~~v~iie~~~ 36 (418)
+++|.|||.|-+|++ +|..|.++|++|.+.|.+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 578999999999996 7888889999999999964
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.2 Score=46.29 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=29.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|..+|..|+..+. +++++|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 579999999999999999999886 899999853
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.21 Score=43.89 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+.|+|.|| |..|..++..|++.|.+|+++.++.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 4578999997 9999999999999999999999963
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.2 Score=45.99 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=30.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||+|.-|...|..|+ .|++|+++|++.
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 478999999999999999999 999999999964
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.76 E-value=0.25 Score=44.74 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=31.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.+.++|+|+|-.|.+++..|++.|.+|++++++
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 3468999999999999999999999999999985
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.2 Score=44.85 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=30.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
..+|+|||+|-.|..+|..|++.|. +++|+|+.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4689999999999999999999998 89999985
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.21 Score=46.13 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=29.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||+|.-|.+.|..|+ .|.+|++++++.
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 67999999999999999999 999999999864
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.22 Score=46.22 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=29.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+|||+|.-|.+.|..|++.|.+|+++ +++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 468999999999999999999999999999 643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.21 Score=45.13 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+|+|+|..|..++..|.+.|++|+++.++.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 3689999999999999999999999999999865
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.26 Score=46.12 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred CCCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.++.|+|+|| |..|..++..|++.|.+|.++.++.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 55678999998 9999999999999999999999965
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.21 Score=40.85 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=32.4
Q ss_pred hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 199 NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 199 ~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+...+++|+|+|+|..|..+|..|...|.. |+++.|++.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~~~ 53 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKNEY 53 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCGG
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECCHH
Confidence 456678999999999999999999887764 999998764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.21 Score=48.07 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3679999999999999999999999999999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.26 Score=47.57 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|..|..++..|.+.|++++++|.+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4579999999999999999999999999999875
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.24 Score=48.59 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=32.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.++|+|||+|..|...+..|.+.|.+|+++++..
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 35789999999999999999999999999999853
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=0.26 Score=42.53 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.7
Q ss_pred cEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+||| +|..|..++..|.+.|.+|++++++.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 699999 99999999999999999999999863
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.28 Score=43.57 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=30.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC----ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF----HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~----~v~iie~~~ 36 (418)
++|.|||+|.-|.+.+..|.+.|+ +|.+++++.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 679999999999999999999998 999999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.13 Score=50.43 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|+|+|-.|..+|..|...|.+++++|++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999875
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=0.22 Score=45.98 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=29.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~ 36 (418)
++|+|||+|..|.++|..|++.| .+++++|++.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 57999999999999999999988 6899999853
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.26 Score=45.70 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
++|.|||.|.-|..+|..|++.| ++|+++|++.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 57999999999999999999999 9999999974
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.2 Score=48.19 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=29.0
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|||+|..|+.+|..|++ |.+|+++|++.
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 69999999999999999999 99999999864
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.23 Score=45.45 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|.|||+|..|...+..|.+.|++|++++++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.26 Score=45.93 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
.++|+|||+|..|.++|..|+..+. +++++|.+
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 4689999999999999999999887 89999985
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.98 E-value=0.22 Score=43.26 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=31.1
Q ss_pred CC-CccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 ME-KKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~-~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|. +++|+|.|| |..|..++..|++.|.+|++++++.
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 54 478999995 9999999999999999999999964
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.28 Score=45.36 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
+|+|||+|..|..+|..|+.. +.+++++|++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 699999999999999999985 67999999964
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.27 Score=45.95 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=30.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+|.|||+|.-|.+.|..|++.|.+|++++++.
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999853
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.2 Score=46.12 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=28.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
|. ++|.+||-|.-|...|.+|++.|++|+++|++...
T Consensus 4 Ms-~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~ 40 (297)
T 4gbj_A 4 MS-EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASK 40 (297)
T ss_dssp CC-CEEEEECCSTTHHHHHHHHHHTTCEEEEC------
T ss_pred CC-CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 44 46999999999999999999999999999987643
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=0.27 Score=46.97 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.86 E-value=0.24 Score=46.02 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=29.5
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+|+|||+|..|.++|..|+..|. +++++|++.
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 69999999999999999999998 899999853
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.24 Score=45.36 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=30.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+|..|...+..|.+.|++|.+++++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 479999999999999999999999999999864
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.80 E-value=0.24 Score=46.08 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEee
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEA 34 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~ 34 (418)
+|.|||+|..|...|..|++.|.+|+++++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 699999999999999999999999999998
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=89.79 E-value=0.33 Score=45.31 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
..++|+|||+|..|.++|..|+..+. +++++|.+
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 35789999999999999999999887 89999985
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.31 Score=44.75 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=30.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
.++++|||+|-+|.+++..|++.|. +|+|++|+
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4689999999999999999999998 89999985
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=0.33 Score=47.58 Aligned_cols=35 Identities=23% Similarity=0.057 Sum_probs=30.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||+|.+|...+..|.+.|.. |+++.+.
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga~---V~vi~~~ 44 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGAR---LTVNALT 44 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCE---EEEEcCC
Confidence 4579999999999999999999998875 9998863
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.31 Score=44.16 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++|.|||+|..|.+.|..|.+.|. +|+++|++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 579999999999999999999998 899999864
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=0.34 Score=43.74 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=30.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++++|||+|-+|-+++..|.+.|.+++|++|..
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 679999999999999999999999999999964
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=89.69 E-value=0.25 Score=48.30 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.+.|+|+|+|..|.+++..|++.|.+|++++++.
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~ 36 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 36 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence 777899999999999999999999999999999864
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=89.61 E-value=0.32 Score=46.05 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|+|+|+|.+|.+++..|...|.+|++++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.38 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+.|+|||+|..|..++..+.+.|++++++|...
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~ 47 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK 47 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4689999999999999999999999999999865
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=0.31 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=30.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
.++|+|||+|..|.++|..|+..+. +++++|.+
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 4689999999999999999999887 89999985
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.38 Score=41.39 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred cEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|+|| |..|..++..|+++|.+|+++.|+.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 5999995 9999999999999999999999964
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.31 E-value=0.33 Score=43.88 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=29.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.23 E-value=0.35 Score=45.89 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+.|+|+|+|..|..++..|+..|.+|+++|++.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999863
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=89.22 E-value=0.35 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.7
Q ss_pred ccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+ |..|..+|..|.+.|++|++++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 58999999 9999999999999999999999864
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.20 E-value=0.27 Score=46.74 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=30.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-------CceEEEeeCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARSD 37 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-------~~v~iie~~~~ 37 (418)
++|.|||+|.-|.+.|..|++.| .+|++++++..
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 57999999999999999999988 89999998653
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=0.35 Score=44.81 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=31.7
Q ss_pred CCCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.+.|+|.|| |..|..++..|++.|.+|++++++.
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence 66788999997 9999999999999999999999865
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.17 E-value=0.34 Score=50.40 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|.|||+|.-|..+|..|++.|++|+++|++.
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 345 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence 4679999999999999999999999999999964
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.29 Score=44.45 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=29.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+|..|...|..|.+ |++|++++++.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 479999999999999999999 99999999864
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.13 E-value=0.35 Score=44.16 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.0
Q ss_pred CC-CccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 ME-KKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~-~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|. ++.|+|+|| |..|..++..|++.|.+|+++.|+.
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 65 678999997 9999999999999999999999864
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.08 E-value=0.44 Score=43.39 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=32.0
Q ss_pred ccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 4 KQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 4 ~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
++|+|.|| |+.|-.++..|.++|++|+++.|++..+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~ 37 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG 37 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence 35999998 9999999999999999999999876543
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.05 E-value=0.37 Score=44.20 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=30.6
Q ss_pred ccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.||| +|..|.++|..|++.|.+|++++++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 4799999 99999999999999999999999864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=89.03 E-value=0.32 Score=44.80 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+++|+|||+|..|...|..|+..+. +++++|.+.
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 3689999999999999999999888 899999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=0.37 Score=45.89 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+.|+|||+|..|..++..|...|.+|+++|++.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.31 Score=44.14 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+.++|+|+|-+|.+++..|++.|.+++|++|+.
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999963
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.3 Score=44.69 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
..+|+|||+|-.|..+|.+|++.|+ +++|+|..
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D 69 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 69 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999998 89999984
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=0.34 Score=44.20 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 69999999999999999999999999999864
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=0.36 Score=44.73 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=29.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
.++|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4689999999999999999988775 799999853
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.42 Score=43.75 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.2
Q ss_pred CccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
++.|+|.|| |..|..++..|++.|.+|+++++...
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 578999998 99999999999999999999998653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 418 | ||||
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 8e-20 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 8e-20 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 6e-17 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 3e-08 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 3e-08 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 9e-08 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 1e-07 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 2e-07 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 6e-07 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 8e-07 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 3e-06 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 3e-06 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 1e-05 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 2e-05 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 3e-05 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 4e-05 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 5e-05 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 5e-05 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 7e-05 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 1e-04 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 1e-04 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 2e-04 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 2e-04 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 3e-04 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 3e-04 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 4e-04 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 4e-04 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 4e-04 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 6e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 6e-04 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 0.001 | |
| d1kifa1 | 246 | c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N | 0.002 | |
| d2jfga1 | 93 | c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D- | 0.003 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 0.003 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 0.003 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 87.8 bits (216), Expect = 8e-20
Identities = 58/321 (18%), Positives = 91/321 (28%), Gaps = 87/321 (27%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWI------------------ 43
++IAI+GAG SGL+ K LL + +FE R GG W
Sbjct: 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 64
Query: 44 ----------------KTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYA 87
TP +L + D + T FP + + +Y + YA
Sbjct: 65 TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYA 123
Query: 88 SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147
L IK V+ IE + G W V + K S
Sbjct: 124 QP--LLPFIKLATDVLDIEKKD----------------------GSWVVTYKGTKAGSPI 159
Query: 148 VHQV-DFVILCVGRFS----------DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA 196
+ D V +C G + P++ + + G +H++
Sbjct: 160 SKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPD 219
Query: 197 AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPD----------- 245
G + VV S A A + + E D
Sbjct: 220 PTLAFVGLALHVVPFPTSQAQAAFL---ARVWSGRLKLPSKEEQLKWQDELMFSLSGANN 276
Query: 246 -YFPWGFPLAYLYLNRFAELL 265
Y +P Y+N+ +
Sbjct: 277 MYHSLDYPKDATYINKLHDWC 297
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 87.2 bits (215), Expect = 8e-20
Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 12/163 (7%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTM-LQTPKQLYQF 60
E+ + +VGAG SGL A L G V E D+GG W Y +
Sbjct: 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCY 65
Query: 61 SDYPWPDSVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKS 117
S ++L YI A FDLR I F+ V F+ E +
Sbjct: 66 SFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFD----EATNT 121
Query: 118 WSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160
W+ +G + + + S + F I G
Sbjct: 122 WTVDTNHGDRI----RARYLIMASGQLSDALTGALFKIDIRGV 160
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 77.5 bits (189), Expect = 6e-17
Identities = 33/245 (13%), Positives = 65/245 (26%), Gaps = 44/245 (17%)
Query: 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223
VP +P FP G + F G + H+ ++ + G+RV V+G S + ++ +
Sbjct: 1 VPQLPNFP---GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIA 52
Query: 224 TANGLENPCTVLYRTEHWNIPD-----------------------------YFPWGFPLA 254
+
Sbjct: 53 KQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSAL 112
Query: 255 YLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSF 314
+ E L EG L A ++ V I+ K R
Sbjct: 113 EVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERL 172
Query: 315 LQELS-----SCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVI 369
+ + + + +++ + + + G+ + L D ++
Sbjct: 173 VPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSEREYEL--DSLV 230
Query: 370 LATGF 374
LATGF
Sbjct: 231 LATGF 235
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 52.9 bits (125), Expect = 3e-08
Identities = 45/252 (17%), Positives = 68/252 (26%), Gaps = 18/252 (7%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDY 63
K++A++GAGVSGL A L + G + VFEA GG +++V
Sbjct: 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVS------------QDGL 48
Query: 64 PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNG 123
W + T V I LR+ +F + +
Sbjct: 49 IWDEGANTMTESEGDVTFLID----SLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDL 104
Query: 124 NGQPFGS-RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
F S K + +E + ++ QV V F E G
Sbjct: 105 IKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGT 164
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
D M + KR V L ++ + G R
Sbjct: 165 CGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSF 224
Query: 243 IPDYFPWGFPLA 254
A
Sbjct: 225 SFLGGMQTLTDA 236
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (125), Expect = 3e-08
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
+ ++ I+G+GVSGL A + L G + EAR +GG + T
Sbjct: 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR-VATFR 48
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 51.3 bits (121), Expect = 9e-08
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 13/129 (10%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPW 65
+A+VG G+SGL +L +G ++ E+ + +GG + T + Y
Sbjct: 3 VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHA------------LAGYLV 49
Query: 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125
+ + +R ++ L +F +
Sbjct: 50 EQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDI 109
Query: 126 QPFGSRGKW 134
P G+R +
Sbjct: 110 LPLGARLRV 118
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
K + IVGAG++GL A L G V EA GG ++T
Sbjct: 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG-RVRTYR 73
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
+ K+I IVGAG SG + + L KG + + R IGG +
Sbjct: 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARD 46
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.4 bits (114), Expect = 6e-07
Identities = 22/162 (13%), Positives = 36/162 (22%), Gaps = 2/162 (1%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSD 62
K Q+AI+GAG SGLL + L G ++ E ++ L +
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGV 61
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+ L L E +
Sbjct: 62 DRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTV 121
Query: 123 GNGQPFGSRGKW--TVAVEDAKNHSTEVHQVDFVILCVGRFS 162
V ++ D++ C G
Sbjct: 122 YQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG 163
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 8e-07
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
+ +VG G+SG+ A K L G + +V EAR +GG T+
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG-RTYTLR 42
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 25/199 (12%), Positives = 48/199 (24%), Gaps = 16/199 (8%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIG--GAWIKTVETTMLQTPKQLYQFS 61
I I GAG+ GL L G + + E+ S+I G I + + L +
Sbjct: 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAV----EALAELG 58
Query: 62 DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFW 121
P + + + + S + + E
Sbjct: 59 LGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERL 118
Query: 122 NGNGQPFGSR--------GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPK 173
G G+ + D + + D ++ G S V +
Sbjct: 119 GQQAVRTGLGVERIEERDGRVLIGARDG-HGKPQALGADVLVGADGIHSAVRAHLHPDQR 177
Query: 174 KGPEAFHGKVIHSMDYSDM 192
+ +
Sbjct: 178 PLRDPLPHWGRGRITLLGD 196
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 46.5 bits (108), Expect = 3e-06
Identities = 38/271 (14%), Positives = 64/271 (23%), Gaps = 18/271 (6%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGGAWIKTVET--------TMLQTPKQ 56
+ +VGAG+SG+ A K L G + + EA IGG +
Sbjct: 3 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR-MHKTNFAGINVELGANWVEGVN 61
Query: 57 LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEK 116
+ + + T + DY+ D + + + + + EK
Sbjct: 62 GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 121
Query: 117 SWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGP 176
+ + +G+ S E N + P P
Sbjct: 122 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVP 181
Query: 177 EAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG-------LE 229
Y D +V + + I N
Sbjct: 182 -LATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP 240
Query: 230 NPCTVLYRTEHWNIPDYFPWGFPLAYLYLNR 260
TV DY L L +
Sbjct: 241 GGVTVKTEDNSVYSADYVMVSASLGVLQSDL 271
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
IVG+G+ G + L +V E R+ IGG
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 18/221 (8%)
Query: 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
QI +VG+G +G ++LL H ++E + G V + + F+
Sbjct: 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 61
Query: 62 DYPWPDSVTTDFPDH---NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSW 118
D + + +Q L + + +
Sbjct: 62 QTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPN 121
Query: 119 SFWNGNGQPFGSRGKW-----TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPK 173
P W T + S Q+ L G +P+ P
Sbjct: 122 MEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGH---LPSGPRPGSA 178
Query: 174 KGPEAFHGKVIHSMDYSD----MDYEAAANLVKGK-RVTVV 209
+ + + +SD E + GK R ++
Sbjct: 179 FIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLL 219
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 10/165 (6%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPW 65
+ ++G G SGL+A +G + ++ + + +G + +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAIS--GGGRCNVTNRLPLDEIVK 62
Query: 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGED--EKSWSFWNG 123
F + + + F+ + + + +
Sbjct: 63 HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122
Query: 124 NGQPFGSRGKWT-VAVEDAKNH-----STEVHQVDFVILCVGRFS 162
G + + E+ + + EV + + V++ VG S
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 24/256 (9%), Positives = 60/256 (23%), Gaps = 16/256 (6%)
Query: 1 MEKK-QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQ 59
++ + ++G G++ + L + G + + + GG +V + L
Sbjct: 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA-ASVTLSQL-------- 52
Query: 60 FSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWS 119
+ + + + + DL + +
Sbjct: 53 -----YEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFK 107
Query: 120 FWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAF 179
+G+ F + V + + S+ + + + + E
Sbjct: 108 QVSGS-YVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 166
Query: 180 HGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239
K Y + G + + A L Y
Sbjct: 167 LDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS 226
Query: 240 HWNIPDYFPWGFPLAY 255
+ P Y P +
Sbjct: 227 PYLYPMYGLGELPQGF 242
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 42.4 bits (98), Expect = 5e-05
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 20/136 (14%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKT------------VET 48
+IA+VG +SGL A L G V+E G I VE
Sbjct: 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL 64
Query: 49 TMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRK-HIKFNRKVVGIEF 107
+ P ++ D + V + D + ++ +VG+
Sbjct: 65 DSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQ 124
Query: 108 EGLSGEDEKSWSFWNG 123
+ + F +G
Sbjct: 125 D----SETVQMRFSDG 136
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 42.1 bits (98), Expect = 5e-05
Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 3/140 (2%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
++ + I+G G G +A GF E R +GG + + +
Sbjct: 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 61
Query: 62 DYPWPDS---VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSW 118
+ + V + + Q + +L + I+ K + + G+
Sbjct: 62 EAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPS 121
Query: 119 SFWNGNGQPFGSRGKWTVAV 138
+ + K +
Sbjct: 122 EISVDTIEGENTVVKGKHII 141
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 41.8 bits (97), Expect = 7e-05
Identities = 30/228 (13%), Positives = 64/228 (28%), Gaps = 25/228 (10%)
Query: 6 IAIVGAGVSGLLACKYL-LLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYP 64
+ +VGAG +GL A + + E GG + + +
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL----GGQLFSAMIVRKPAHL 91
Query: 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGN 124
+ D + + + + + + + ++ ++
Sbjct: 92 FLDEIGVAYDEQDTYVVVK---HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV----KG 144
Query: 125 GQPFGSRGKWTVAVEDAKNHST---EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG 181
+ G W + ++ S V + V+ G D P + G
Sbjct: 145 NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG--HDGPFGATGVKRLK---SIG 199
Query: 182 KVIHSMDYSDMDYEAAAN-LVKGKRVTVVGLQKSALDIAMECTTANGL 228
+ H +D A + +V+ R V G+ ME +G
Sbjct: 200 MIDHVPGMKALDMNTAEDAIVRLTREVVPGMIV----TGMEVAEIDGA 243
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 15/70 (21%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARSDIGGAWIKTVETTMLQTPKQ 56
IAIVG+G S A LL + E G V +
Sbjct: 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSI 62
Query: 57 LYQFSDYPWP 66
QF
Sbjct: 63 SKQFEKTAED 72
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1 MEKK-QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42
M+++ + ++G G++ + + + G + + GG
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES 45
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 7/167 (4%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
+ + I+GAG +GL L G VF+ IG + + T ++
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAH 62
Query: 62 DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFW 121
D+I A + + E + E KS
Sbjct: 63 YLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIV-EMLKSECDK 121
Query: 122 NGNGQPFGSRGKWTVAVEDAKNH------STEVHQVDFVILCVGRFS 162
G S +++ + ++ Q +I+ G S
Sbjct: 122 YGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 38.1 bits (88), Expect = 2e-04
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 167 IPEFPP-KKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223
IP + +A G V+HS + + + G+ V VVG SA D+ T
Sbjct: 1 IPNIKGLDEYAKAVPGSVLHSSLFREPEL------FVGESVLVVGGASSANDLVRHLT 52
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 1 MEKK-QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQ 59
+ K + I+G G +G +A GF+ E R +GG + +
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 61
Query: 60 FSDYPW 65
F
Sbjct: 62 FHQMHT 67
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 18/116 (15%), Positives = 31/116 (26%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPW 65
+ +VG+G +G A G I+ E IGG Q
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDS 78
Query: 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFW 121
P+ + D Q ++ K +G + + S +
Sbjct: 79 PELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA 134
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/139 (12%), Positives = 35/139 (25%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPW 65
+ I+G+G +GL A G I+ E GG K +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDK 85
Query: 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125
+ D + ++ + + +G + + S + +
Sbjct: 86 KQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPT 145
Query: 126 QPFGSRGKWTVAVEDAKNH 144
G + D
Sbjct: 146 GGAGVGAHVAQVLWDNAVK 164
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 4e-04
Identities = 23/156 (14%), Positives = 39/156 (25%), Gaps = 3/156 (1%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPW 65
+ IVG+G +G A Y KG + R GG + TV+ + +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGA 61
Query: 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125
++ + + S + + G + S N N
Sbjct: 62 LKVHVDEYD-VDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNW 120
Query: 126 QPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161
+ T V V C
Sbjct: 121 LEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP 156
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 13/149 (8%), Positives = 41/149 (27%), Gaps = 11/149 (7%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
+K++ ++G+GV GL + L KG+ + + + +
Sbjct: 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTF--ASPWAGANWTPFMT 62
Query: 62 DYPWPDSVTTDFPDHNQVLDYIQSYASHF---------DLRKHIKFNRKVVGIEFEGLSG 112
P + + ++ + + + + + + K + + L
Sbjct: 63 LTDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPS 122
Query: 113 EDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141
+ + K+ +
Sbjct: 123 SECPPGAIGVTYDTLSVHAPKYCQYLARE 151
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 27/133 (20%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPI-VFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
+IA++GAG + + +L G+ I +FE +
Sbjct: 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ-------------------------- 37
Query: 62 DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFW 121
+Y S + DL I + + E + ++E + +
Sbjct: 38 EYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAF 97
Query: 122 NGNGQPFGSRGKW 134
G G P R
Sbjct: 98 IGIGLPEVLRDPK 110
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 38.2 bits (87), Expect = 6e-04
Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 22/203 (10%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHP--IVFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
+++ +VG G G A KY+ L + E +D ++ + + +
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62
Query: 62 DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFW 121
D + + ++R VV G+ +K
Sbjct: 63 DGLRAHGI--QVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAP---GIELIYDKIEQRA 117
Query: 122 NGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG 181
Q G D K + +H+ VI D P G
Sbjct: 118 GKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVI------GDASIANPMPKSGYSANSQG 171
Query: 182 KVIHSMDYSDMDYEAAANLVKGK 204
KV A L+KG+
Sbjct: 172 KVA---------AAAVVVLLKGE 185
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 38.0 bits (87), Expect = 0.001
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFS 61
E Q+ +VGAG +G A G + I+ + GG ++ + Q +
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN---SMISAGGMNAVGTKQQT 74
Query: 62 DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKH 95
+ D V D + L +
Sbjct: 75 AHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQ 108
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.1 bits (85), Expect = 0.002
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39
++ ++GAGV GL + + +
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Score = 34.7 bits (79), Expect = 0.003
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37
+ K + I+G G++GL + L +G P V + R
Sbjct: 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (83), Expect = 0.003
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSD 62
KK +A+VGAG +GL +G +F+A S+IGG + + + + ++
Sbjct: 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYR 102
Query: 63 YPW 65
Sbjct: 103 RMI 105
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 36.7 bits (83), Expect = 0.003
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MEKK-QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42
M++ + ++G G+ G YL + + +FE+ + G
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTT 43
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 418 | |||
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.86 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.83 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.69 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.56 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.54 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.47 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.41 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.41 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.4 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.32 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.32 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.28 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.28 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.25 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.25 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.23 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.22 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.21 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.21 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.2 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.18 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.17 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.17 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.17 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.16 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.16 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.15 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.14 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.14 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.13 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.12 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.12 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.12 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.12 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.11 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.1 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.1 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 99.08 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.07 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.07 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.06 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.06 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.04 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.03 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.03 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.03 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.02 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.02 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.01 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.01 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.01 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.01 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.0 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.99 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.97 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.96 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.96 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.96 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.96 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.95 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.94 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.94 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.93 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.92 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.9 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.9 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.87 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.87 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.84 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.84 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.83 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.82 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.81 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.79 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.79 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.78 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.78 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.77 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.73 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.72 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.69 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.69 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.69 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.69 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.68 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.62 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.56 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.56 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.56 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.55 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.53 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.53 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.52 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.52 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.51 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.5 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.46 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.45 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.4 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.37 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.37 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.35 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 98.33 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.33 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 98.29 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.23 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.22 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.21 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.2 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.19 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.19 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.08 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.02 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.01 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.0 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.96 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.94 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.93 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.92 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.91 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.89 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.86 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.83 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.82 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.78 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.77 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 97.77 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.75 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.74 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.62 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 97.62 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.62 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.58 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.55 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.51 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.5 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.48 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 97.38 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.31 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 97.3 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.25 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.24 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.22 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.19 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.11 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.11 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.96 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.96 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 96.94 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.74 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.65 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 96.63 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.62 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.62 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 96.51 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.48 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.41 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 96.34 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.25 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 96.23 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 96.21 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 96.17 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 96.15 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.14 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.14 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 96.14 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.13 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.95 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.93 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.89 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.76 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 95.66 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.47 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 95.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.43 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.37 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.29 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 95.17 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.09 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.06 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.05 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.83 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.82 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.81 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.81 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.78 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.74 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 94.7 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.61 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.54 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.51 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.48 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.47 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.45 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.44 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.22 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 94.03 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.01 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.98 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.97 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.94 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.88 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.87 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 93.64 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.63 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.56 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.46 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.32 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.27 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 93.25 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.23 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.04 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.02 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.99 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.98 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.94 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.9 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.86 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 92.86 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.79 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 92.53 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 92.32 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.11 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.1 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 92.07 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.73 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.57 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.53 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.39 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 91.36 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.27 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.14 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.97 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.89 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.81 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.55 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 90.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.47 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.43 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 90.32 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.23 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.05 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 89.94 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 89.94 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 89.78 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 89.63 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 89.28 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 89.21 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.79 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.21 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.9 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 87.74 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.47 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 87.38 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.32 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 87.3 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 86.86 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.49 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.45 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.37 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 86.15 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 86.01 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 85.82 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 85.8 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.68 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 85.68 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.63 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 85.26 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 84.92 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 84.89 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.78 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 84.4 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 83.8 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 83.36 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 82.96 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 82.79 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 82.7 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 82.68 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.1 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 82.09 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 81.69 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 81.46 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 81.39 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 81.37 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 80.78 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.74 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 80.71 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.67 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 80.57 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 80.3 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 80.23 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 80.18 |
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.86 E-value=3.9e-22 Score=185.16 Aligned_cols=159 Identities=24% Similarity=0.350 Sum_probs=133.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCccccccCCCCCC---CCCCCCCCChhH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPWP---DSVTTDFPDHNQ 78 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 78 (418)
..||+|||||++||++|++|++.|++++|||+++.+||.|.. .||+.+++++...+.++..+.. ..+...++.+.+
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e 86 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 86 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence 479999999999999999999999999999999999999987 8999999999888877765422 233577899999
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.+|++.+++++++.+.++++++|+++..++ ..+.|.|.+.++ .+..||+||+||
T Consensus 87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de--------------------~~~~W~V~~~~~-----~~~~~~~~i~at 141 (298)
T d1w4xa1 87 ILRYINFVADKFDLRSGITFHTTVTAAAFDE--------------------ATNTWTVDTNHG-----DRIRARYLIMAS 141 (298)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEET--------------------TTTEEEEEETTC-----CEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCcccccCCcEEEEEEEec--------------------CCCceeeccccc-----cccccceEEEee
Confidence 9999999999999988899999999999876 246799999877 589999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCC-CceEEeccCCC
Q 014821 159 GRFSDVPNIPEFPPKKGPEAF-HGKVIHSMDYS 190 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~-~~~~~~~~~~~ 190 (418)
|.. +.|.+|.++ +.+.+ .+...++..|.
T Consensus 142 G~l-s~~~~p~~~---~~~i~g~~g~~l~~~W~ 170 (298)
T d1w4xa1 142 GQL-SDALTGALF---KIDIRGVGNVALKEKWA 170 (298)
T ss_dssp CSC-CCCTTHHHH---TSEEECGGGCBHHHHTT
T ss_pred ccc-ccccCCccc---ccccccCCCeeehhhch
Confidence 998 689888877 66532 33344444444
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.83 E-value=1.3e-20 Score=178.26 Aligned_cols=145 Identities=30% Similarity=0.515 Sum_probs=115.7
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccc-cCCcce--------------------------
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK-TVETTM-------------------------- 50 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~-~~~~~~-------------------------- 50 (418)
|. +++|+|||||+|||++|++|++.+ .+|+|||+++.+||.|.. .+++..
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 80 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 80 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccc
Confidence 54 478999999999999999998876 489999999999999986 333332
Q ss_pred -------ecCCccccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCC
Q 014821 51 -------LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNG 123 (418)
Q Consensus 51 -------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~ 123 (418)
.+.+...+.|.+.+++.+ ...|+++.++.+|++.+++.++. .++++++|++|+...
T Consensus 81 ~~y~~l~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~yl~~~~~~~~~--~I~~~t~V~~v~~~~-------------- 143 (335)
T d2gv8a1 81 PLYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKKD-------------- 143 (335)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEET--------------
T ss_pred ccchhhhcCCcHhhhhhhhhcCCcc-cccCCchHHHHHHHHHHHHHhhh--cccCceEEEEEEecC--------------
Confidence 233333444555555544 57789999999999999998776 899999999999877
Q ss_pred CCCCCCCCCceEEEEecCCCCc-eeEEEeCEEEEeeccCCCCCCCCCCC
Q 014821 124 NGQPFGSRGKWTVAVEDAKNHS-TEVHQVDFVILCVGRFSDVPNIPEFP 171 (418)
Q Consensus 124 ~~~~~~~~~~~~v~~~~~~~~~-~~~i~~d~vIlAtG~~~~~p~~p~~~ 171 (418)
+.|.|++++.+.+. .....||+||+|||.. +.|.+|.+.
T Consensus 144 --------~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~-s~p~~~~~~ 183 (335)
T d2gv8a1 144 --------GSWVVTYKGTKAGSPISKDIFDAVSICNGHY-EVPYTGYLY 183 (335)
T ss_dssp --------TEEEEEEEESSTTCCEEEEEESEEEECCCSS-SSBCCCBCC
T ss_pred --------CEEEEEEEecCCCCeEEEEEeeEEEEccccc-ccceecccc
Confidence 78999998876543 4467899999999999 688887653
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.69 E-value=1.3e-16 Score=142.06 Aligned_cols=194 Identities=22% Similarity=0.345 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.|++|++| |.+.|.|.++|+++|... ....++|+|+|||+|.||+|+|.+++..+.. ++++.|++.|+.
T Consensus 1 vP~iP~~p---G~e~F~G~v~HS~~~~~~-----~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~---~~~~~~~~~~~~ 69 (235)
T d1w4xa2 1 VPQLPNFP---GLKDFAGNLYHTGNWPHE-----PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRTPHFAV 69 (235)
T ss_dssp CCCCCCCT---TGGGCCSEEEEGGGCCSS-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESSCCCEE
T ss_pred CCCCCCCC---ChhhCCCcEEecCcCCCC-----CCCCCCCEEEEECCCccHHHHHHHHHhhhcc---ccccccccceee
Confidence 48899998 999999999999999531 2457899999999999999999999998865 999999998888
Q ss_pred cCCCCCCCcchhhhhh----HHHHHhhcCCC---------chh------HHHHHHhh-----------------hhHHHH
Q 014821 244 PDYFPWGFPLAYLYLN----RFAELLVHKPG---------EGF------LLSLLATM-----------------LSPLRW 287 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~----~~~~~~~~~~~---------~~~------~~~~~~~~-----------------~~~~~~ 287 (418)
+.......+....... .........+. ... ........ ......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (235)
T d1w4xa2 70 PARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANE 149 (235)
T ss_dssp ECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHH
T ss_pred eecccCCccchhhhhccchHHHHHHHHhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHhhchhhhHHHHHHHhhhhHHH
Confidence 7665333222211110 11111111110 000 00000000 001111
Q ss_pred HHHHHHHHHHHhhhhhc--ccCCCCCcccccccccccccccCcchhhhhccCcEEE---eccCceeEecCcEEEcCCcee
Q 014821 288 AISKFVEADIKKKHRLA--KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIIL---KKSQDFSFCEDGIVVDGQTTP 362 (418)
Q Consensus 288 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~v~~~~~~~v~~~~g~~~ 362 (418)
.....+........... ...+.+.... .+|++....+.+.+.+.+.++.. ..+.|.++++++|+++|| +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~I~~~~~~gV~~~dg-~- 223 (235)
T d1w4xa2 150 RVAEFIRNKIRNTVRDPEVAERLVPKGYP----FGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSER-E- 223 (235)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHSCCSSC----SSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESSC-E-
T ss_pred HHHHHHHHHHHHhccchHhHHhccCCcCc----cccccccCCcchHHHhcCCCeeEEeecCCCCeEEeCCeEEECCC-E-
Confidence 22222222222111111 0111222211 24555556667777777766554 445699999999999988 5
Q ss_pred eeccEEEEccCC
Q 014821 363 LKTDLVILATGF 374 (418)
Q Consensus 363 ~~~D~Vi~atG~ 374 (418)
+++|+||+||||
T Consensus 224 ~~~D~VV~ATGf 235 (235)
T d1w4xa2 224 YELDSLVLATGF 235 (235)
T ss_dssp EECSEEEECCCC
T ss_pred EcCCEEEeCCCC
Confidence 899999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=5.7e-16 Score=131.31 Aligned_cols=121 Identities=26% Similarity=0.386 Sum_probs=92.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||||||++|..|+++|++|+|||+.+.+||.+..... ...+....++.+|
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~----------------------~p~~~~~~~~~~~ 100 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ----------------------IPGKEEFYETLRY 100 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT----------------------STTCTTHHHHHHH
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEe----------------------CcccchHHHHHHH
Confidence 589999999999999999999999999999999999997664100 1223344688889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+...++++++ ++++++.|+. + ....+|.||+|||..
T Consensus 101 ~~~~~~~~gV--~i~l~~~Vt~----~-------------------------------------~~~~~d~vilAtG~~- 136 (179)
T d1ps9a3 101 YRRMIEVTGV--TLKLNHTVTA----D-------------------------------------QLQAFDETILASGIP- 136 (179)
T ss_dssp HHHHHHHHTC--EEEESCCCCS----S-------------------------------------SSCCSSEEEECCCEE-
T ss_pred HHHhhhcCCe--EEEeCCEEcc----c-------------------------------------ccccceeEEEeecCC-
Confidence 9999999998 7888776521 1 123589999999964
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHH
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDI 218 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~ 218 (418)
|+.+.++ + ...+++++|||+|.+++|+
T Consensus 137 --~~~~~~p---g------------------------~~~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 137 --NRALAQP---L------------------------IDSGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp --CCTTHHH---H------------------------HTTTCCEEECGGGTCCSSC
T ss_pred --Ccccccc---h------------------------hccCCEEEEECCcHhhhhc
Confidence 5544333 2 2347899999999999886
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.54 E-value=1.5e-17 Score=148.72 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=100.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++||++|..|+++|++++|+|+++.+||.|...... ..+........+
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~----------------------~~~~~~~~~~~~ 106 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL----------------------PGLGEWSYHRDY 106 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTS----------------------TTCGGGGHHHHH
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccccccc----------------------ceeecccccchh
Confidence 5899999999999999999999999999999999999988762110 001111223333
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
......+... .... . .+.... ..++..+. ..+.+|+||+|||+.
T Consensus 107 ~~~~~~~~~~--~~~~-~---~~~~~~------------------------~~~~~~~~-----~~~~~d~vviAtG~~- 150 (233)
T d1djqa3 107 RETQITKLLK--KNKE-S---QLALGQ------------------------KPMTADDV-----LQYGADKVIIATGAS- 150 (233)
T ss_dssp HHHHHHHHHT--TCTT-C---EEECSC------------------------CCCCHHHH-----HTSCCSEEEECCCEE-
T ss_pred HHHHHHHHhh--ccee-e---eeeccc------------------------ccccchhh-----hhhccceeeeccCCC-
Confidence 3333333221 0000 0 011111 11111111 246799999999976
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
+..|.++ +.........+.. .... .....+++|+|+|+|.+|+|+|.+|...+.. |++++|++...
T Consensus 151 --~~~~~~~---~~~~~~~~~~~~~--~~~~----~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~r~~~~~ 216 (233)
T d1djqa3 151 --ECTLWNE---LKARESEWAENDI--KGIY----LIGDAEAPRLIADATFTGHRVAREIEEANPQ---IAIPYKRETIA 216 (233)
T ss_dssp --CCHHHHH---HHHTTHHHHHTTC--CEEE----ECGGGTSCCCHHHHHHHHHHHHHTTTSSCTT---SCCCCCCCCCC
T ss_pred --ccccccc---ccccccccchhhh--hhhh----hccccCCceeEecCchHHHHHHHHHHhcCCc---eEEEEeccccc
Confidence 3333222 2111100111111 1111 1224578999999999999999999988765 99999987643
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.47 E-value=6.3e-14 Score=125.80 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=89.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccC---Ccceec---------CCcc--------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV---ETTMLQ---------TPKQ-------------- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~---~~~~l~---------~~~~-------------- 56 (418)
++||+|||||++|+++|..|+++|++|+|||+++.+|+...... ....-. .+..
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 81 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence 49999999999999999999999999999999998876433210 000000 0000
Q ss_pred ----ccccCCCCCCCCC----CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 57 ----LYQFSDYPWPDSV----TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 57 ----~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
++.....+..... .........+.+.|.+.+++.++ .++++++|+++..++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 140 (251)
T d2i0za1 82 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYEN------------------- 140 (251)
T ss_dssp HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEET-------------------
T ss_pred HHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCC--cccCCcEEEEEEEEC-------------------
Confidence 0000001110000 01122345677888888888898 899999999999876
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+..+.|.+.++ ++++||+||+|||.. +.|.
T Consensus 141 --~~~~~v~~~~g-----~~i~a~~vI~AtGg~-S~p~ 170 (251)
T d2i0za1 141 --GQTKAVILQTG-----EVLETNHVVIAVGGK-SVPQ 170 (251)
T ss_dssp --TEEEEEEETTC-----CEEECSCEEECCCCS-SSGG
T ss_pred --CEEEEEEeCCC-----CeEecCeEEEccCCc-cccc
Confidence 23344666665 589999999999987 3443
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.41 E-value=2.6e-13 Score=107.46 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=74.5
Q ss_pred hhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHH
Q 014821 198 ANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSL 277 (418)
Q Consensus 198 ~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (418)
....++++++|||+|.+|+|+|.+|+..+.. |+++.++++ ++++.. + ..+
T Consensus 25 ~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~-~l~~~~------~----~~~---------------- 74 (121)
T d1d7ya2 25 AGLRPQSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPR-LMSRAA------P----ATL---------------- 74 (121)
T ss_dssp HHCCTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSS-TTTTTS------C----HHH----------------
T ss_pred HhhhcCCeEEEECcchhHHHHHHHhhcccce---EEEEeeccc-cccccC------C----HHH----------------
Confidence 3455689999999999999999999998765 999999886 333221 0 011
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEE
Q 014821 278 LATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVV 356 (418)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~ 356 (418)
.+.+.+.+++.+|+++.+. +..+.++.+++
T Consensus 75 -------------------------------------------------~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l 105 (121)
T d1d7ya2 75 -------------------------------------------------ADFVARYHAAQGVDLRFERSVTGSVDGVVLL 105 (121)
T ss_dssp -------------------------------------------------HHHHHHHHHTTTCEEEESCCEEEEETTEEEE
T ss_pred -------------------------------------------------HHHHHHHHHHCCcEEEeCCEEEEEeCCEEEE
Confidence 1112345667789998887 88888999999
Q ss_pred cCCceeeeccEEEEccC
Q 014821 357 DGQTTPLKTDLVILATG 373 (418)
Q Consensus 357 ~~g~~~~~~D~Vi~atG 373 (418)
+||++ +++|.||+|+|
T Consensus 106 ~dg~~-i~~D~vi~a~G 121 (121)
T d1d7ya2 106 DDGTR-IAADMVVVGIG 121 (121)
T ss_dssp TTSCE-EECSEEEECSC
T ss_pred CCCCE-EECCEEEEeeC
Confidence 99999 99999999998
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2e-15 Score=132.94 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=41.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCccee
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTML 51 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l 51 (418)
++|||+|||||++|+++|.+|++.|.+|+|||+ ..+||+|.. +.|...+
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc~~~gc~p~k~l 51 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVM 51 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeEecccccccccc
Confidence 469999999999999999999999999999999 469998866 4444333
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.40 E-value=5.1e-13 Score=120.18 Aligned_cols=135 Identities=18% Similarity=0.301 Sum_probs=86.1
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc------------cCCcceecC-Ccccc--------
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK------------TVETTMLQT-PKQLY-------- 58 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~------------~~~~~~l~~-~~~~~-------- 58 (418)
|+ .+||+|||||+|||.+|+.|+++|++|+|||+++.+|..+.. ..+...+.. +....
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN 80 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence 54 589999999999999999999999999999999988743221 000110100 10000
Q ss_pred -------ccCCCCCCCCC-CCCC--CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 59 -------QFSDYPWPDSV-TTDF--PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 59 -------~~~~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
.-...++.... ...+ .....+.+.+...+++.++ +++++++|++++... +..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV--~i~~~~~V~~i~~~~--~~~-------------- 142 (253)
T d2gqfa1 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQ--NDE-------------- 142 (253)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECC--SCS--------------
T ss_pred cchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCC--CeecCceEEEEEeec--CCc--------------
Confidence 00001111000 0111 1356788889999999999 899999999999876 000
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.-.+.+. .++ .+++||+||+|||..
T Consensus 143 --~v~~~~~-~~~-----~~~~a~~VIiAtGG~ 167 (253)
T d2gqfa1 143 --KVRFVLQ-VNS-----TQWQCKNLIVATGGL 167 (253)
T ss_dssp --SCCEEEE-ETT-----EEEEESEEEECCCCS
T ss_pred --eeEEEEe-cCC-----EEEEeCEEEEcCCcc
Confidence 0123332 233 589999999999977
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.32 E-value=3.2e-12 Score=116.01 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
+.....+...+...+++.|. .++.+++|++++.+. +.|.|.+.++ ++.||
T Consensus 147 ~i~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~----------------------~~~~V~t~~g------~i~a~ 196 (276)
T d1ryia1 147 HVEPYFVCKAYVKAAKMLGA--EIFEHTPVLHVERDG----------------------EALFIKTPSG------DVWAN 196 (276)
T ss_dssp BCCHHHHHHHHHHHHHHTTC--EEETTCCCCEEECSS----------------------SSEEEEETTE------EEEEE
T ss_pred eeecccchhHHHHHHHHcCC--EEecceEEEeEEeec----------------------ceEEEecCCe------EEEcC
Confidence 34566777888888889998 899999999999766 5688887665 79999
Q ss_pred EEEEeeccCC
Q 014821 153 FVILCVGRFS 162 (418)
Q Consensus 153 ~vIlAtG~~~ 162 (418)
.||+|+|.++
T Consensus 197 ~vV~AaG~~s 206 (276)
T d1ryia1 197 HVVVASGVWS 206 (276)
T ss_dssp EEEECCGGGT
T ss_pred EEEECCCccH
Confidence 9999999874
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=8.2e-12 Score=97.99 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=80.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+. +.+ ..++.+++
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-------------------------------~~~--d~~~~~~~ 68 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------------------PSF--DPMISETL 68 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TTS--CHHHHHHH
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-------------------------------hhc--chhhHHHH
Confidence 689999999999999999999999999999986432 111 14788899
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+..++.|+ ++++++.|..+..+. ++..++.+.++ +++.+|.||+|+|
T Consensus 69 ~~~l~~~GV--~~~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~~~~D~vi~a~G 116 (116)
T d1gesa2 69 VEVMNAEGP--QLHTNAIPKAVVKNT---------------------DGSLTLELEDG-----RSETVDCLIWAIG 116 (116)
T ss_dssp HHHHHHHSC--EEECSCCEEEEEECT---------------------TSCEEEEETTS-----CEEEESEEEECSC
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEcC---------------------CcEEEEEECCC-----CEEEcCEEEEecC
Confidence 999999999 899999999999876 34567777776 5899999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.28 E-value=3.2e-11 Score=94.92 Aligned_cols=98 Identities=27% Similarity=0.318 Sum_probs=81.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.++
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-------------------------------~~~--d~ei~~~ 68 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------PAV--DEQVAKE 68 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------TTS--CHHHHHH
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-------------------------------Ccc--cchhHHH
Confidence 3789999999999999999999999999999976331 111 2578999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+++..++.|+ ++++++++++++... +..++++.++ +..+++.||.|++|+|
T Consensus 69 l~~~l~~~Gv--~i~~~~~v~~i~~~~----------------------~~v~v~~~~~--~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 69 AQKILTKQGL--KILLGARVTGTEVKN----------------------KQVTVKFVDA--EGEKSQAFDKLIVAVG 119 (119)
T ss_dssp HHHHHHHTTE--EEEETCEEEEEEECS----------------------SCEEEEEESS--SEEEEEEESEEEECSC
T ss_pred HHHHHHhcCc--eeecCcEEEEEEEeC----------------------CEEEEEEEEC--CCCEEEECCEEEEeeC
Confidence 9999999999 899999999999876 4566776665 4457899999999998
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.28 E-value=3.7e-12 Score=98.45 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCC----CceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 168 PEFPPKKGPEAF----HGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 168 p~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
|.+| |+++| .|.++|+..|+. +..+++|+|+|||+|.||+|+|.+|+..+.. +++++|++.
T Consensus 2 P~ip---Gl~~f~~~~~G~i~Hs~~y~~------~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~---v~~~~~r~~ 66 (107)
T d2gv8a2 2 PNIK---GLDEYAKAVPGSVLHSSLFRE------PELFVGESVLVVGGASSANDLVRHLTPVAKH---PIYQSLLGG 66 (107)
T ss_dssp CCCB---THHHHHHHSTTSEEEGGGCCC------GGGGTTCCEEEECSSHHHHHHHHHHTTTSCS---SEEEECTTC
T ss_pred cCCC---ChHHHhccCCccEEECCcCcc------hhhcCCCeEEEECCCCCHHHHHHHHHHhcCE---EEEEEecCc
Confidence 4555 76654 589999999998 4578999999999999999999999887654 788877664
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.25 E-value=1.1e-11 Score=112.86 Aligned_cols=57 Identities=9% Similarity=0.176 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
...+...+.+.+++.|+ +++++++|.+++..+ +.|.|.+.++ ++.||.||
T Consensus 149 p~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~V~t~~g------~i~a~~VV 198 (281)
T d2gf3a1 149 SENCIRAYRELAEARGA--KVLTHTRVEDFDISP----------------------DSVKIETANG------SYTADKLI 198 (281)
T ss_dssp HHHHHHHHHHHHHHTTC--EEECSCCEEEEEECS----------------------SCEEEEETTE------EEEEEEEE
T ss_pred ccccccccccccccccc--cccCCcEEEEEEEEC----------------------CEEEEEECCc------EEEcCEEE
Confidence 45778888889999998 899999999999877 6688887665 69999999
Q ss_pred EeeccCC
Q 014821 156 LCVGRFS 162 (418)
Q Consensus 156 lAtG~~~ 162 (418)
+|+|.++
T Consensus 199 iAaG~~s 205 (281)
T d2gf3a1 199 VSMGAWN 205 (281)
T ss_dssp ECCGGGH
T ss_pred ECCCCcc
Confidence 9999873
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=7.5e-11 Score=93.17 Aligned_cols=100 Identities=22% Similarity=0.361 Sum_probs=82.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|++.|.+|+|+++++++. +.+ ..++.++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------------------~~~--d~ei~~~ 69 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------------------ASM--DGEVAKA 69 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------SSS--CHHHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------------------hhh--hhhhHHH
Confidence 4789999999999999999999999999999987442 111 2578999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
+++..++.|+ +++++++|++++..+ ......++..+++.++.++++||.|++|
T Consensus 70 l~~~l~~~GV--~i~~~~~v~~v~~~~--------------------~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 70 TQKFLKKQGL--DFKLSTKVISAKRND--------------------DKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp HHHHHHHTTC--EEECSEEEEEEEEET--------------------TTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred HHHHHHhccc--eEEeCCEEEEEEEeC--------------------CCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 9999999999 899999999999876 1233556667776778889999999987
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=1.7e-13 Score=121.82 Aligned_cols=158 Identities=20% Similarity=0.102 Sum_probs=93.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-------CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPD 75 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-------~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 75 (418)
.++|+|||||||||+||..|+++| ++|+|||+.+.+||.|+...+ +.+..
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~-----------------------p~~~~ 58 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA-----------------------PDHPK 58 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC-----------------------TTCTG
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccC-----------------------ccccc
Confidence 469999999999999999999987 579999999999999876321 11222
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
...+.++......+.+. .+++++++... +...+ ....+|.|+
T Consensus 59 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~~------------------------------~~~~~------~~~~~~~v~ 100 (239)
T d1lqta2 59 IKSISKQFEKTAEDPRF--RFFGNVVVGEH------------------------------VQPGE------LSERYDAVI 100 (239)
T ss_dssp GGGGHHHHHHHHTSTTE--EEEESCCBTTT------------------------------BCHHH------HHHHSSEEE
T ss_pred chhhhhhhhhhhccCCc--eEEEEEEeccc------------------------------cchhh------hhcccccee
Confidence 34555666666666676 66666543110 00001 123589999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCc-eEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 156 LCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 156 lAtG~~~~~p~~p~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
+|||+.+.....+... ....+.. ..+..................+++++|+|+|..++|++..+..
T Consensus 101 ~atGa~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 101 YAVGAQSRGVPTPGLP---FDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp ECCCCCEECCCCTTSC---CBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred eecCCCcccccccccc---ccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 9999864333344332 2211111 0111000000000000122346788899999999998876654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.22 E-value=2.4e-12 Score=102.08 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccccc
Q 014821 165 PNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIP 244 (418)
Q Consensus 165 p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~ 244 (418)
|+.|++| |.+ .++....+.+.. ........+++++|||+|++|+|+|..|...|.. ||++.|++.. ++
T Consensus 2 ~r~p~ip---G~e----~~~t~~~~~d~~-~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~l-~~ 69 (122)
T d1xhca2 2 AREPQIK---GKE----YLLTLRTIFDAD-RIKESIENSGEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAMF-LG 69 (122)
T ss_dssp ECCCCSB---TGG----GEECCCSHHHHH-HHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSCC-TT
T ss_pred CCCcCCC---Ccc----ceEccCCHHHHH-HHHHHhhcCCcEEEECCcHHHHHHHHHhhcccce---EEEEeccccc-cC
Confidence 5667777 754 244332222111 1122334568999999999999999999998865 9999998753 22
Q ss_pred CCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccccc
Q 014821 245 DYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTI 324 (418)
Q Consensus 245 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (418)
.. . .++
T Consensus 70 -~d-------~----~~~-------------------------------------------------------------- 75 (122)
T d1xhca2 70 -LD-------E----ELS-------------------------------------------------------------- 75 (122)
T ss_dssp -CC-------H----HHH--------------------------------------------------------------
T ss_pred -CC-------H----HHH--------------------------------------------------------------
Confidence 21 0 111
Q ss_pred ccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCC
Q 014821 325 TVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGF 374 (418)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~ 374 (418)
+.+.+.+++.+|+++.+. +..++.+++ +.+++. +++|.||+|||.
T Consensus 76 ---~~~~~~l~~~GV~~~~~~~v~~~~~~~v-~~~~~~-i~~D~vi~a~Gv 121 (122)
T d1xhca2 76 ---NMIKDMLEETGVKFFLNSELLEANEEGV-LTNSGF-IEGKVKICAIGI 121 (122)
T ss_dssp ---HHHHHHHHHTTEEEECSCCEEEECSSEE-EETTEE-EECSCEEEECCE
T ss_pred ---HHHHHHHHHCCcEEEeCCEEEEEeCCEE-EeCCCE-EECCEEEEEEEe
Confidence 112235566689999986 888888876 456777 999999999994
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.21 E-value=1.3e-10 Score=91.15 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=78.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.. .+ ..++.++
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~-------------------------------~~--d~~~~~~ 68 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------------------------------GF--EKQMAAI 68 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------TS--CHHHHHH
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecceecc-------------------------------cc--cchhHHH
Confidence 36899999999999999999999999999999875421 11 1478889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
+.+..++.|+ +++++++|++++..+ +...+++..+ +..+++.||.|++.
T Consensus 69 l~~~l~~~GI--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~--g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 69 IKKRLKKKGV--EVVTNALAKGAEERE----------------------DGVTVTYEAN--GETKTIDADYVLVT 117 (117)
T ss_dssp HHHHHHHTTC--EEEESEEEEEEEEET----------------------TEEEEEEEET--TEEEEEEESEEEEC
T ss_pred HHHHHHhcCC--EEEcCCEEEEEEEcC----------------------CEEEEEEEeC--CCEEEEEeEEEEEC
Confidence 9999999999 899999999999876 4466666544 55678999999973
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.21 E-value=2.8e-11 Score=110.54 Aligned_cols=39 Identities=33% Similarity=0.635 Sum_probs=36.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
+||+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 39 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV 39 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence 479999999999999999999999999999999999853
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.20 E-value=5.3e-11 Score=93.86 Aligned_cols=92 Identities=23% Similarity=0.402 Sum_probs=75.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. .. -..++.++
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------~~--~~~~~~~~ 77 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS------------------------------RA--APATLADF 77 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc------------------------------cc--CCHHHHHH
Confidence 47899999999999999999999999999999763310 01 12578888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+++..++.|+ +++++++|+++... .+.+.++ .++.||.||+|+|
T Consensus 78 ~~~~l~~~GV--~i~~~~~v~~~~~~--------------------------~v~l~dg-----~~i~~D~vi~a~G 121 (121)
T d1d7ya2 78 VARYHAAQGV--DLRFERSVTGSVDG--------------------------VVLLDDG-----TRIAADMVVVGIG 121 (121)
T ss_dssp HHHHHHTTTC--EEEESCCEEEEETT--------------------------EEEETTS-----CEEECSEEEECSC
T ss_pred HHHHHHHCCc--EEEeCCEEEEEeCC--------------------------EEEECCC-----CEEECCEEEEeeC
Confidence 9999999999 89999999876532 3666666 5899999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.3e-11 Score=96.87 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=69.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHh
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLAT 280 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (418)
..+++|+|||+|++|+|+|..|+..|.. ||++.|+++ ++|... . .
T Consensus 19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~-~l~~~d-------~----~-------------------- 63 (116)
T d1gesa2 19 ALPERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDA-PLPSFD-------P----M-------------------- 63 (116)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS-SSTTSC-------H----H--------------------
T ss_pred hCCCEEEEECCChhhHHHHHHhhccccE---EEEEeecch-hhhhcc-------h----h--------------------
Confidence 3478999999999999999999998865 999999885 444432 0 0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cE
Q 014821 281 MLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GI 354 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v 354 (418)
+.+.+.+.+++.+|+++.+. +..+..+ .+
T Consensus 64 ---------------------------------------------~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v 98 (116)
T d1gesa2 64 ---------------------------------------------ISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL 98 (116)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEE
T ss_pred ---------------------------------------------hHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEE
Confidence 11122345566678888886 7676543 36
Q ss_pred EEcCCceeeeccEEEEccC
Q 014821 355 VVDGQTTPLKTDLVILATG 373 (418)
Q Consensus 355 ~~~~g~~~~~~D~Vi~atG 373 (418)
.+++|++ +++|.||+|||
T Consensus 99 ~~~~g~~-~~~D~vi~a~G 116 (116)
T d1gesa2 99 ELEDGRS-ETVDCLIWAIG 116 (116)
T ss_dssp EETTSCE-EEESEEEECSC
T ss_pred EECCCCE-EEcCEEEEecC
Confidence 7889999 99999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.17 E-value=1.4e-10 Score=92.99 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=77.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. .. ...++.++
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~------------------------------~~--~~~~~~~~ 82 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE------------------------------RV--TAPPVSAF 82 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------TT--SCHHHHHH
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc------------------------------cc--cchhhhhh
Confidence 47899999999999999999999999999999864321 00 12467888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+++..++.|+ +++++++|+.++... + ......+.+.++ .++.||.||+|+|
T Consensus 83 ~~~~~~~~GV--~i~~~~~v~~i~~~~--~-----------------~~~v~~v~~~~G-----~~i~~D~vi~a~G 133 (133)
T d1q1ra2 83 YEHLHREAGV--DIRTGTQVCGFEMST--D-----------------QQKVTAVLCEDG-----TRLPADLVIAGIG 133 (133)
T ss_dssp HHHHHHHHTC--EEECSCCEEEEEECT--T-----------------TCCEEEEEETTS-----CEEECSEEEECCC
T ss_pred hhhccccccc--EEEeCCeEEEEEEeC--C-----------------CceEEEEECCCC-----CEEECCEEEEeeC
Confidence 8888889999 899999999998865 0 011123556666 5899999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.17 E-value=4.1e-11 Score=94.07 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=70.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHh
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLAT 280 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (418)
..+++++|||+|.+|+|+|..+........+|+++.|++. ++|... ..
T Consensus 16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~-il~~~d-----------~~-------------------- 63 (117)
T d1feca2 16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-ILRGFD-----------SE-------------------- 63 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-SSTTSC-----------HH--------------------
T ss_pred ccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccc-cccccc-----------ch--------------------
Confidence 4478999999999999999887766433346999999885 335433 00
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cE
Q 014821 281 MLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GI 354 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v 354 (418)
+.+.+.+.+++.+|+++.+. +.+++.+ .+
T Consensus 64 ---------------------------------------------~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v 98 (117)
T d1feca2 64 ---------------------------------------------LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV 98 (117)
T ss_dssp ---------------------------------------------HHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEE
T ss_pred ---------------------------------------------hhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEE
Confidence 11122346677789999997 8888643 27
Q ss_pred EEcCCceeeeccEEEEccC
Q 014821 355 VVDGQTTPLKTDLVILATG 373 (418)
Q Consensus 355 ~~~~g~~~~~~D~Vi~atG 373 (418)
.+++|++ +++|.||+|||
T Consensus 99 ~~~~g~~-i~~D~Vi~a~G 116 (117)
T d1feca2 99 VFESGAE-ADYDVVMLAIG 116 (117)
T ss_dssp EETTSCE-EEESEEEECSC
T ss_pred EECCCCE-EEcCEEEEecC
Confidence 8899999 99999999999
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.17 E-value=1.9e-11 Score=95.83 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhh
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATM 281 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (418)
.+++|+|||+|.+|+|+|..|+..|.. ||++.|+++ ++|.+. ..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~-il~~~d-----------~~--------------------- 64 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNR-ILRKFD-----------ES--------------------- 64 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSS-SCTTSC-----------HH---------------------
T ss_pred CCCEEEEECCchHHHHHHHHHHhcccc---ceeeehhcc-cccccc-----------HH---------------------
Confidence 478999999999999999999988865 999999886 445433 11
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc---EE
Q 014821 282 LSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IV 355 (418)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~---v~ 355 (418)
+.+.+.+.+++.+|+++.+. +.+++. ++ ++
T Consensus 65 --------------------------------------------~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~ 100 (117)
T d1onfa2 65 --------------------------------------------VINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIH 100 (117)
T ss_dssp --------------------------------------------HHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEE
T ss_pred --------------------------------------------HHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEE
Confidence 11223346677789999887 777753 22 77
Q ss_pred EcCCceee-eccEEEEcc
Q 014821 356 VDGQTTPL-KTDLVILAT 372 (418)
Q Consensus 356 ~~~g~~~~-~~D~Vi~at 372 (418)
+++|++ + .+|.||+|.
T Consensus 101 ~~~G~~-~~~~D~Vi~AI 117 (117)
T d1onfa2 101 LSDGRI-YEHFDHVIYCV 117 (117)
T ss_dssp ETTSCE-EEEESEEEECC
T ss_pred ECCCCE-EEeCCEEEEeC
Confidence 899988 6 579999984
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.16 E-value=1.5e-10 Score=91.60 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=81.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|.+.|.+|+|+++.+.+. +.+ ..++..+
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-------------------------------~~~--d~~~~~~ 71 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------------------PTM--DAEIRKQ 71 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TTS--CHHHHHH
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-------------------------------chh--hhcchhh
Confidence 3689999999999999999999999999999986431 111 1578889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
+.+..++.|+ ++++++++.+++..+ +..++++...++++..+++||.|++|
T Consensus 72 l~~~l~~~GI--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 72 FQRSLEKQGM--KFKLKTKVVGVDTSG----------------------DGVKLTVEPSAGGEQTIIEADVVLVS 122 (123)
T ss_dssp HHHHHHHSSC--CEECSEEEEEEECSS----------------------SSEEEEEEESSSCCCEEEEESEEECC
T ss_pred hhhhhhcccc--eEEcCCceEEEEEcc----------------------CeEEEEEEECCCCeEEEEEcCEEEEc
Confidence 9999999999 899999999999866 45677777666677788999999987
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.15 E-value=1.9e-10 Score=90.20 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=78.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.++++|||||+.|+.+|..|.. .|.+|+++++.+.+. +.+ ..++
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------------------~~~--d~~~ 64 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------------------RGF--DSEL 64 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------------------TTS--CHHH
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------------------ccc--cchh
Confidence 3689999999999999987665 378999999976331 111 1478
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+++++..++.|+ ++.+++.+++++... ++...+...++ .++.||.||+|+|
T Consensus 65 ~~~~~~~l~~~GI--~v~~~~~v~~i~~~~---------------------~g~~~v~~~~g-----~~i~~D~Vi~a~G 116 (117)
T d1feca2 65 RKQLTEQLRANGI--NVRTHENPAKVTKNA---------------------DGTRHVVFESG-----AEADYDVVMLAIG 116 (117)
T ss_dssp HHHHHHHHHHTTE--EEEETCCEEEEEECT---------------------TSCEEEEETTS-----CEEEESEEEECSC
T ss_pred hHHHHHHHhhCcE--EEEcCCEEEEEEECC---------------------CCEEEEEECCC-----CEEEcCEEEEecC
Confidence 8999999999999 899999999999876 34556777777 5899999999999
Q ss_pred c
Q 014821 160 R 160 (418)
Q Consensus 160 ~ 160 (418)
.
T Consensus 117 R 117 (117)
T d1feca2 117 R 117 (117)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.14 E-value=1.3e-10 Score=92.06 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=81.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|++.|.+++|+|+.+.+. +.+ ..++.++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-------------------------------~~~--d~~~~~~ 72 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-------------------------------QGA--DRDLVKV 72 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TTS--CHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-------------------------------ccc--hhhHHHH
Confidence 3689999999999999999999999999999986442 111 2588899
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+..++.++ ++++++++++++..+ +...+.+.+.+ +..+++.||.|++|+|.
T Consensus 73 l~~~l~~~gv--~~~~~~~v~~v~~~~----------------------~g~~v~~~~~~-g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 73 WQKQNEYRFD--NIMVNTKTVAVEPKE----------------------DGVYVTFEGAN-APKEPQRYDAVLVAAGR 125 (125)
T ss_dssp HHHHHGGGEE--EEECSCEEEEEEEET----------------------TEEEEEEESSS-CCSSCEEESCEEECCCE
T ss_pred HHHHHHHcCc--ccccCcEEEEEEEcC----------------------CcEEEEEEeCC-CCeEEEEcCEEEEecCC
Confidence 9999999998 899999999999877 34556665543 44468999999999993
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.14 E-value=8.3e-11 Score=91.96 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|++.|.+|+++|+.+.+. +.+ ..++.++
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-------------------------------~~~--d~~~~~~ 67 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------PTY--DSELTAP 67 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TTS--CHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-------------------------------ccc--cchhHHH
Confidence 3689999999999999999999999999999987442 111 1468889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+++..++.|+ +++++++|++++... .+..... +...++.||.||+|+|
T Consensus 68 l~~~l~~~gV--~i~~~~~V~~i~~~~-------------------------~~~~~~~--~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 68 VAESLKKLGI--ALHLGHSVEGYENGC-------------------------LLANDGK--GGQLRLEADRVLVAVG 115 (115)
T ss_dssp HHHHHHHHTC--EEETTCEEEEEETTE-------------------------EEEECSS--SCCCEECCSCEEECCC
T ss_pred HHHHHHhhcc--eEEcCcEEEEEcCCe-------------------------EEEEEcC--CCeEEEEcCEEEEecC
Confidence 9999999999 899999999986322 2222211 3346899999999998
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.13 E-value=3.2e-10 Score=89.41 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=76.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.+.+++++++.+.+. ..+ ..++.+++
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------------------~~~--d~~~~~~~ 69 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------LIK--DNETRAYV 69 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------TCC--SHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------------------ccc--ccchhhhh
Confidence 689999999999999999999999999999976331 111 14678888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
++..++.++ +++.++++..++..+ ++.+...... ..+..+++.||.||+|+|
T Consensus 70 ~~~l~~~gI--~v~~~~~v~~i~~~~---------------------~~~~~~~~~~-~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 70 LDRMKEQGM--EIISGSNVTRIEEDA---------------------NGRVQAVVAM-TPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp HHHHHHTTC--EEESSCEEEEEEECT---------------------TSBEEEEEEE-ETTEEEEEECSCEEECCC
T ss_pred hhhhhcccc--EEEcCCEEEEEEecC---------------------CceEEEEEEE-eCCCCEEEEcCEEEEEEC
Confidence 889999999 899999999999876 2222222111 124457899999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=5.7e-10 Score=87.92 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=80.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+|++++. +- +.+ ..++.+++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~-~l-------------------------------~~~--D~~~~~~l 66 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------RGF--DQDMANKI 66 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SS-------------------------------TTS--CHHHHHHH
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEech-hh-------------------------------ccC--CHHHHHHH
Confidence 689999999999999999999999999998742 20 111 15788999
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+..++.|+ ++++++.|+.++..... ......+++....++......||.|++|+|
T Consensus 67 ~~~l~~~Gv--~i~~~~~v~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 67 GEHMEEHGI--KFIRQFVPTKIEQIEAG------------------TPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp HHHHHHTTE--EEEESCEEEEEEEEECS------------------TTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred HHHHHHCCC--EEEECCEEEEEEEecCC------------------CccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999999 89999999999876500 123456677666656667789999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.12 E-value=3.6e-11 Score=95.31 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=36.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYF 247 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~ 247 (418)
..+++++|||+|.+|+|+|..+...|.. ||++.+++. ++|...
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~---Vtive~~~~-il~~~d 66 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDG-LMQGAD 66 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSS-SSTTSC
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcCCCE---EEEEEeecc-ccccch
Confidence 5579999999999999999999999876 999999885 455443
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.4e-10 Score=88.55 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=79.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+- +.+ ..++.++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~ 68 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------RSF--DSMISTN 68 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TTS--CHHHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------------------cch--hhHHHHH
Confidence 3689999999999999999999999999999986331 111 1568889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC----ceeEEEeCEEEEee
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH----STEVHQVDFVILCV 158 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~i~~d~vIlAt 158 (418)
+.+..++.|+ ++++++++++++... +.+.+.......+ ....+.||.|++|+
T Consensus 69 ~~~~l~~~Gv--~i~~~~~v~~i~~~~----------------------~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~ 124 (125)
T d3grsa2 69 CTEELENAGV--EVLKFSQVKEVKKTL----------------------SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI 124 (125)
T ss_dssp HHHHHHHTTC--EEETTEEEEEEEEET----------------------TEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEEcC----------------------CeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence 9999999999 899999999998876 4455554433322 23467899999999
Q ss_pred c
Q 014821 159 G 159 (418)
Q Consensus 159 G 159 (418)
|
T Consensus 125 G 125 (125)
T d3grsa2 125 G 125 (125)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=4.6e-11 Score=95.94 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=69.8
Q ss_pred hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHH
Q 014821 199 NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLL 278 (418)
Q Consensus 199 ~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (418)
....+++|+|||+|++|+|+|..|...+.. |+++.++++ +++... + ..
T Consensus 31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~---Vtvie~~~~-~l~~~~------~----~~------------------ 78 (133)
T d1q1ra2 31 QLIADNRLVVIGGGYIGLEVAATAIKANMH---VTLLDTAAR-VLERVT------A----PP------------------ 78 (133)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS-TTTTTS------C----HH------------------
T ss_pred hhccCCEEEEECCchHHHHHHHHHHhhCcc---eeeeeeccc-cccccc------c----hh------------------
Confidence 445689999999999999999999998865 999999886 333221 0 00
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----
Q 014821 279 ATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----- 352 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----- 352 (418)
+.+.+.+.+++.+|+++.+. +..++..
T Consensus 79 -----------------------------------------------~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~ 111 (133)
T d1q1ra2 79 -----------------------------------------------VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQK 111 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCC
T ss_pred -----------------------------------------------hhhhhhhcccccccEEEeCCeEEEEEEeCCCce
Confidence 01112234566678888886 7766532
Q ss_pred --cEEEcCCceeeeccEEEEccC
Q 014821 353 --GIVVDGQTTPLKTDLVILATG 373 (418)
Q Consensus 353 --~v~~~~g~~~~~~D~Vi~atG 373 (418)
.+.++||++ +++|.||+|+|
T Consensus 112 v~~v~~~~G~~-i~~D~vi~a~G 133 (133)
T d1q1ra2 112 VTAVLCEDGTR-LPADLVIAGIG 133 (133)
T ss_dssp EEEEEETTSCE-EECSEEEECCC
T ss_pred EEEEECCCCCE-EECCEEEEeeC
Confidence 277899999 99999999998
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.11 E-value=2.6e-10 Score=102.24 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=78.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---cCC---------cce---ecCCccccccCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---TVE---------TTM---LQTPKQLYQFSDYPWPD 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~~~---------~~~---l~~~~~~~~~~~~~~~~ 67 (418)
..+|+|||||++|+++|..|+++|++++|||+++.++..+.. ..+ +.. ...+...+.+.......
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 83 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence 468999999999999999999999999999998765332211 000 100 01111111111111100
Q ss_pred CC---CCCCCChhHHHHHHHHHHH-hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 68 SV---TTDFPDHNQVLDYIQSYAS-HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 68 ~~---~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
.. ...+. .......+..... .... .+++++++++++... ..+++++.++
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~----------------------~~v~v~~~dG-- 136 (265)
T d2voua1 84 RVGSVPADWR-FTSYDSIYGGLYELFGPE--RYHTSKCLVGLSQDS----------------------ETVQMRFSDG-- 136 (265)
T ss_dssp EEEEEECCCC-EEEHHHHHHHHHHHHCST--TEETTCCEEEEEECS----------------------SCEEEEETTS--
T ss_pred eecccccccc-cchhHHHHHHHHHhcccc--eeecCcEEEEEEeeC----------------------CceEEEECCC--
Confidence 00 01111 1122222222222 3344 789999999999876 5688888887
Q ss_pred CceeEEEeCEEEEeeccCC
Q 014821 144 HSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~ 162 (418)
.++.+|.+|.|.|..+
T Consensus 137 ---~~~~~d~~v~adG~~s 152 (265)
T d2voua1 137 ---TKAEANWVIGADGGAS 152 (265)
T ss_dssp ---CEEEESEEEECCCTTC
T ss_pred ---CEEEEEEEeccccccc
Confidence 5899999999999774
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.2e-10 Score=91.44 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=78.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHh----CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLL----KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~----~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
++++|||||+.|+.+|..|++ .|.+|+++++++.+.. ..++ .++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~------------------------------~~~~--~~~ 85 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG------------------------------KILP--EYL 85 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT------------------------------TTSC--HHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc------------------------------ccCC--HHH
Confidence 689999999999999999964 5889999999763320 1122 467
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
..++.+..++.|+ ++++++.|.+++.++ +...+++.++ +++.||.||+|+|
T Consensus 86 ~~~~~~~l~~~GV--~~~~~~~V~~i~~~~----------------------~~~~v~l~~G-----~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 86 SNWTMEKVRREGV--KVMPNAIVQSVGVSS----------------------GKLLIKLKDG-----RKVETDHIVAAVG 136 (137)
T ss_dssp HHHHHHHHHTTTC--EEECSCCEEEEEEET----------------------TEEEEEETTS-----CEEEESEEEECCC
T ss_pred HHHHHHHHHhCCc--EEEeCCEEEEEEecC----------------------CEEEEEECCC-----CEEECCEEEEeec
Confidence 8888999999999 899999999998876 5567888777 5899999999999
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.10 E-value=5.9e-10 Score=87.12 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=77.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+++. ..+ ..++.++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~ 68 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------RKF--DESVINV 68 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------TTS--CHHHHHH
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-------------------------------ccc--cHHHHHH
Confidence 4689999999999999999999999999999976441 111 2588889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEE-EeCEEEEee
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH-QVDFVILCV 158 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i-~~d~vIlAt 158 (418)
+.+..++.|+ ++++++++++++... ++..++.+.++ +++ .||.||+|.
T Consensus 69 ~~~~l~~~gV--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~G-----~~~~~~D~Vi~AI 117 (117)
T d1onfa2 69 LENDMKKNNI--NIVTFADVVEIKKVS---------------------DKNLSIHLSDG-----RIYEHFDHVIYCV 117 (117)
T ss_dssp HHHHHHHTTC--EEECSCCEEEEEESS---------------------TTCEEEEETTS-----CEEEEESEEEECC
T ss_pred HHHHHHhCCC--EEEECCEEEEEEEcC---------------------CCeEEEEECCC-----CEEEeCCEEEEeC
Confidence 9999889899 899999999999876 35567877776 355 579999984
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.08 E-value=8.4e-11 Score=107.35 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=81.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-------ccccc-c---CC--cc--ee---cCCccccccCCC-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-------GAWIK-T---VE--TT--ML---QTPKQLYQFSDY- 63 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-------g~~~~-~---~~--~~--~l---~~~~~~~~~~~~- 63 (418)
++||+|||||++||++|..|+++|++++|||+++..+ ..+.. . .. +. .+ ..+...+.+.+.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~ 81 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG 81 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence 3699999999999999999999999999999976321 10100 0 00 00 00 000111111100
Q ss_pred --------CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 64 --------PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 64 --------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
............+..+.+.|...++..+. .+.+...++.....+ .+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~ 138 (292)
T d1k0ia1 82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDLQ---------------------GERPY 138 (292)
T ss_dssp EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECTT---------------------SSSCE
T ss_pred cccccccccccccccceeecHHHHHHHHHHHHHhCCC--cEEEcceeeeeeeec---------------------cCceE
Confidence 00000112233566788888888888776 566666665555443 24456
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
|++.++ +++.++.||+||.|+|..|
T Consensus 139 v~~~~~--g~~~~i~a~~vVgADG~~S 163 (292)
T d1k0ia1 139 VTFERD--GERLRLDCDYIAGCDGFHG 163 (292)
T ss_dssp EEEEET--TEEEEEECSEEEECCCTTC
T ss_pred EEEecC--CcEEEEEeCEEEECCCCCC
Confidence 666544 5556899999999999885
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.07 E-value=6.1e-11 Score=92.76 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=35.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDY 246 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~ 246 (418)
..+++++|||+|.+|+|+|..|.+.|.+ ||++.+.++ ++|.+
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~---Vtlve~~~~-il~~~ 60 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARER-ILPTY 60 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSS-SSTTS
T ss_pred cCCCeEEEECCCHHHHHHHHHHhhcccc---eEEEeeecc-ccccc
Confidence 3468999999999999999999999876 999999886 44544
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.07 E-value=5.3e-10 Score=102.86 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=83.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCccee------------cCCcc--------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTML------------QTPKQ-------------- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l------------~~~~~-------------- 56 (418)
.+||+|||+|++|+++|..|+++|.+|+||||.+..||.-......... .++..
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 95 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 95 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccc
Confidence 5899999999999999999999999999999988766532211000000 00000
Q ss_pred ----------------ccccCCCCCCC-----CC--------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 57 ----------------LYQFSDYPWPD-----SV--------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 57 ----------------~~~~~~~~~~~-----~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
++.-...++.. .. .........+...+.+.+.+.++ .++++++++++..
T Consensus 96 ~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv--~i~~~~~v~~li~ 173 (308)
T d1y0pa2 96 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNI--DLRMNTRGIEVLK 173 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEEE
T ss_pred hHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccc--eEEEeeccchhhh
Confidence 00000001100 00 00111233466667777778888 8999999999987
Q ss_pred cCCCCcccccccccCCCCCCCCCCCc-eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 108 EGLSGEDEKSWSFWNGNGQPFGSRGK-WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ ++. .-|.+.+.. +....+.++.||||||.++
T Consensus 174 ~~---------------------~G~V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~ 207 (308)
T d1y0pa2 174 DD---------------------KGTVKGILVKGMY-KGYYWVKADAVILATGGFA 207 (308)
T ss_dssp CT---------------------TSCEEEEEEEETT-TEEEEEECSEEEECCCCCT
T ss_pred hc---------------------ccccccccccccc-cceeEeecCeEEEccCccc
Confidence 65 122 234555443 4456899999999999764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.06 E-value=1.1e-10 Score=91.48 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=70.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHh
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLAT 280 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (418)
..+++++|||+|++|+|+|..+...+.....|+++.|++. ++|.+. ..
T Consensus 18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~-iL~~~d-----------~~-------------------- 65 (117)
T d1aoga2 18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM-ILRGFD-----------HT-------------------- 65 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-SSTTSC-----------HH--------------------
T ss_pred hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch-hhcccc-----------hH--------------------
Confidence 4578999999999999999988877654346999999885 445443 01
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C---cE
Q 014821 281 MLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D---GI 354 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~---~v 354 (418)
+.+.+.+.+++.+|+++.+. +.+++. + .+
T Consensus 66 ---------------------------------------------~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v 100 (117)
T d1aoga2 66 ---------------------------------------------LREELTKQLTANGIQILTKENPAKVELNADGSKSV 100 (117)
T ss_dssp ---------------------------------------------HHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEE
T ss_pred ---------------------------------------------HHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEE
Confidence 11223456677789999987 777753 2 27
Q ss_pred EEcCCceeeeccEEEEcc
Q 014821 355 VVDGQTTPLKTDLVILAT 372 (418)
Q Consensus 355 ~~~~g~~~~~~D~Vi~at 372 (418)
.+++|++ +++|.||+|.
T Consensus 101 ~~~~G~~-i~~D~Vi~AI 117 (117)
T d1aoga2 101 TFESGKK-MDFDLVMMAI 117 (117)
T ss_dssp EETTSCE-EEESEEEECS
T ss_pred EECCCcE-EEeCEEEEeC
Confidence 8899999 9999999983
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.06 E-value=1.5e-10 Score=98.31 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=55.1
Q ss_pred ccCcEEEeccC-ceeEecC--cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeeeeecc
Q 014821 335 EEGSIILKKSQ-DFSFCED--GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYI 411 (418)
Q Consensus 335 ~~~~v~~~~~~-v~~~~~~--~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
...+++++.+. +..+..+ .+.+++|++ +++|.||+|||..|+..... ..+.....+ ..++++.++..+.++.
T Consensus 66 ~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~-~~~D~vi~a~G~~p~~~~~~---~~~~~~~gl-~~~~~I~vd~~~~ts~ 140 (183)
T d1d7ya1 66 RAPEVEWLLGVTAQSFDPQAHTVALSDGRT-LPYGTLVLATGAAPRAVLAN---DALARAAGL-ACDDGIFVDAYGRTTC 140 (183)
T ss_dssp GSTTCEEEETCCEEEEETTTTEEEETTSCE-EECSEEEECCCEEECCEEEC---CHHHHHTTC-CBSSSEECCTTCBCSS
T ss_pred hcCCeEEEEeccccccccccceeEecCCcE-eeeeeEEEEEEEEccccccc---ccccceeeE-eeCCcEEeccceeccc
Confidence 44567888876 7777654 588899999 99999999999998743222 233333334 3345688887777889
Q ss_pred Ccccc
Q 014821 412 DTLTY 416 (418)
Q Consensus 412 ~~~~~ 416 (418)
|++|.
T Consensus 141 ~~IyA 145 (183)
T d1d7ya1 141 PDVYA 145 (183)
T ss_dssp TTEEE
T ss_pred cccch
Confidence 99985
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.04 E-value=1.1e-09 Score=86.53 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=74.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+- ..+ -..++..+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-------------------------------~~~-~d~~~~~~ 77 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-------------------------------GVY-LDKEFTDV 77 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------TTT-CCHHHHHH
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc-------------------------------ccc-cchhhHHH
Confidence 3689999999999999999999999999999976331 101 11578888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+++..++.|+ ++++++.+.+++.+. ....+ ..++ .++.||.||+|.
T Consensus 78 ~~~~l~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v-~~dg-----~~i~~D~vi~aI 123 (123)
T d1nhpa2 78 LTEEMEANNI--TIATGETVERYEGDG----------------------RVQKV-VTDK-----NAYDADLVVVAV 123 (123)
T ss_dssp HHHHHHTTTE--EEEESCCEEEEECSS----------------------BCCEE-EESS-----CEEECSEEEECS
T ss_pred HHHHhhcCCe--EEEeCceEEEEEcCC----------------------CEEEE-EeCC-----CEEECCEEEEEC
Confidence 9999999999 899999999998654 22334 4455 489999999984
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.03 E-value=1.4e-09 Score=85.07 Aligned_cols=94 Identities=13% Similarity=0.178 Sum_probs=76.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
++++|||||+.|+.+|..|... +.+|+++++.+.+- +.+ ..++.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------------------~~~--d~~~~ 67 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------------------RGF--DHTLR 67 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------------------TTS--CHHHH
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------------------ccc--chHHH
Confidence 6899999999999999777654 55799999976331 111 25788
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+++.+..++.|+ ++++++++++++... ++...+++.++ .++.||.||+|.
T Consensus 68 ~~l~~~l~~~GV--~v~~~~~v~~ie~~~---------------------~~~~~v~~~~G-----~~i~~D~Vi~AI 117 (117)
T d1aoga2 68 EELTKQLTANGI--QILTKENPAKVELNA---------------------DGSKSVTFESG-----KKMDFDLVMMAI 117 (117)
T ss_dssp HHHHHHHHHTTC--EEEESCCEEEEEECT---------------------TSCEEEEETTS-----CEEEESEEEECS
T ss_pred HHHHHHHHhcCc--EEEcCCEEEEEEEcC---------------------CCeEEEEECCC-----cEEEeCEEEEeC
Confidence 999999999999 999999999999866 35577888877 589999999984
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.03 E-value=9.5e-12 Score=112.11 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=37.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
||++|||||++|+.+|..+++.|.+|+|+|+ ..+||+|..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc~n 41 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVN 41 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeEEe
Confidence 8999999999999999999999999999999 468998765
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.03 E-value=4.6e-10 Score=88.57 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=71.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. . + ..++.+++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------~-~--d~~~~~~~ 78 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-------------------------------G-L--DEELSNMI 78 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-------------------------------T-C--CHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc-------------------------------C-C--CHHHHHHH
Confidence 689999999999999999999999999999976331 0 1 25788888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+..++.|+ ++++++++.+++.+. +. .++ ..+.+|.||+|+|.
T Consensus 79 ~~~l~~~GV--~~~~~~~v~~~~~~~--------------------------v~-~~~-----~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 79 KDMLEETGV--KFFLNSELLEANEEG--------------------------VL-TNS-----GFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHTTE--EEECSCCEEEECSSE--------------------------EE-ETT-----EEEECSCEEEECCE
T ss_pred HHHHHHCCc--EEEeCCEEEEEeCCE--------------------------EE-eCC-----CEEECCEEEEEEEe
Confidence 888888999 899999998875432 22 233 58999999999994
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.02 E-value=1.1e-09 Score=101.33 Aligned_cols=137 Identities=20% Similarity=0.175 Sum_probs=85.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceec------------CCccc-------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQ------------TPKQL------------- 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~------------~~~~~------------- 57 (418)
.+||+|||+|++|+++|..|+++|.+|+|||+.+..||.-.....+.... ++...
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 102 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 102 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence 47999999999999999999999999999999887665322211111000 00000
Q ss_pred -----------------cccCCCCCCC-----C--C------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 58 -----------------YQFSDYPWPD-----S--V------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 58 -----------------~~~~~~~~~~-----~--~------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
+.-...++.. . . .........+...+...+.+.+. .++++++|+++..
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv--~i~~~t~v~~li~ 180 (322)
T d1d4ca2 103 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT--DIRLNSRVVRILE 180 (322)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTC--EEETTEEEEEEEC
T ss_pred HHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCc--eEEEeeecccccc
Confidence 0000011110 0 0 11112345677788888888888 8999999999987
Q ss_pred cCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 108 EGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+. + +...-|.+.+.. +....+.++.||||||.++
T Consensus 181 d~--~------------------G~V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~ 214 (322)
T d1d4ca2 181 DA--S------------------GKVTGVLVKGEY-TGYYVIKADAVVIAAGGFA 214 (322)
T ss_dssp CS--S------------------SCCCEEEEEETT-TEEEEEECSEEEECCCCCT
T ss_pred cc--c------------------ccccceEEEeec-ccEEEEeCCeEEEcCCCcc
Confidence 55 1 111224444432 3456799999999999763
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.02 E-value=2.6e-10 Score=89.62 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=41.9
Q ss_pred eEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCC
Q 014821 182 KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDY 246 (418)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~ 246 (418)
.++.+.+...+. ..+++++|||+|.+|+|+|..++..|.. |+++.++++ ++|..
T Consensus 8 ~v~~s~~~l~l~-------~~p~~i~IiG~G~ig~E~A~~l~~~G~~---Vtiv~~~~~-ll~~~ 61 (119)
T d3lada2 8 VIVDSTGALDFQ-------NVPGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDK-FLPAV 61 (119)
T ss_dssp SEEEHHHHTSCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSS-SSTTS
T ss_pred EEEchhHhhCcc-------cCCCeEEEECCChHHHHHHHHHHHcCCc---eEEEEeecc-cCCcc
Confidence 355555544432 5579999999999999999999999876 999999886 45544
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.01 E-value=2.8e-10 Score=95.94 Aligned_cols=146 Identities=12% Similarity=-0.005 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhh
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATM 281 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (418)
.+|+|+|||+|.+|+++|..|...+.. .+|+++.+++.+..+... ......
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~-~~Vtlie~~~~~~~~~~~-------~~~~~~--------------------- 51 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPS-IEVTLIEPNTDYYTCYLS-------NEVIGG--------------------- 51 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTT-SEEEEECSCSCEECSTTH-------HHHHHT---------------------
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCC-CcEEEEECCCcccccccc-------ccccch---------------------
Confidence 478999999999999999999988764 569999988754333211 000000
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEec--CcEEEcCC
Q 014821 282 LSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCE--DGIVVDGQ 359 (418)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~--~~v~~~~g 359 (418)
... .. .............+.+..+.+..+.. ..+.+.++
T Consensus 52 ------------------~~~--~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T d1fcda1 52 ------------------DRK--LE-------------------SIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGG 92 (186)
T ss_dssp ------------------SSC--GG-------------------GGEECSHHHHTTTEEEECCCEEECCTTTTEEEETTS
T ss_pred ------------------hhh--hh-------------------hhhhhhhhccccceeEeeeeeEeeeeccceeecccc
Confidence 000 00 00000123344567777766555443 34777889
Q ss_pred ceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceee-e-eeccCcccc
Q 014821 360 TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRS-A-HIYIDTLTY 416 (418)
Q Consensus 360 ~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 416 (418)
++ +++|.+|+|||.+++....+.....+..............+... + .++.|++|.
T Consensus 93 ~~-i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 150 (186)
T d1fcda1 93 AE-FGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHV 150 (186)
T ss_dssp CE-EECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEE
T ss_pred ee-eccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceE
Confidence 98 99999999999999877666555554444444344555554443 2 677788774
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.3e-09 Score=92.93 Aligned_cols=111 Identities=16% Similarity=0.342 Sum_probs=78.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++||.+|.+|++.|.+++|||+.. .++.+..... + ..+. + ........++.+.
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~-~~g~~~~~~~---i------~~~~--~-----~~~~~~~~~~~~~ 67 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTE---V------ENWP--G-----DPNDLTGPLLMER 67 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSB---C------CCST--T-----CCSSCBHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec-ccccccccch---h------hhhh--c-----cccccchHHHHHH
Confidence 5799999999999999999999999999999864 4443332110 0 0000 0 1222345678888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+...+.+++. .+.+ .+|+.+.... +.+.+..... .+.++.+++|+|..
T Consensus 68 ~~~~~~~~~~--~~~~-~~V~~~~~~~----------------------~~~~v~~~~~------~~~~~~viva~G~~ 115 (190)
T d1trba1 68 MHEHATKFET--EIIF-DHINKVDLQN----------------------RPFRLNGDNG------EYTCDALIIATGAS 115 (190)
T ss_dssp HHHHHHHTTC--EEEC-CCEEEEECSS----------------------SSEEEEESSC------EEEEEEEEECCCEE
T ss_pred HHHHHHhcCc--EEec-ceeEEEecCC----------------------CcEEEEEeee------eEeeeeeeeeccee
Confidence 8888888887 4554 5788877665 5566665543 89999999999965
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.8e-10 Score=92.94 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=70.0
Q ss_pred hhcCCCEEEEEcCCCCHHHHHHHHhhhcC-CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHH
Q 014821 199 NLVKGKRVTVVGLQKSALDIAMECTTANG-LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSL 277 (418)
Q Consensus 199 ~~~~~~~v~VvG~G~sa~e~a~~l~~~~~-~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (418)
.....++++|||+|.+|+|+|.+|+.... ...+|+++.+.+..+...+. ..+
T Consensus 33 ~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~-----------~~~---------------- 85 (137)
T d1m6ia2 33 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILP-----------EYL---------------- 85 (137)
T ss_dssp HHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSC-----------HHH----------------
T ss_pred HhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCC-----------HHH----------------
Confidence 33457899999999999999999974311 01359999998753322222 001
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----
Q 014821 278 LATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---- 352 (418)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---- 352 (418)
.+.+.+.+++.+|+++.+. +.+++.+
T Consensus 86 -------------------------------------------------~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~ 116 (137)
T d1m6ia2 86 -------------------------------------------------SNWTMEKVRREGVKVMPNAIVQSVGVSSGKL 116 (137)
T ss_dssp -------------------------------------------------HHHHHHHHHTTTCEEECSCCEEEEEEETTEE
T ss_pred -------------------------------------------------HHHHHHHHHhCCcEEEeCCEEEEEEecCCEE
Confidence 1112345677789999987 8787654
Q ss_pred cEEEcCCceeeeccEEEEccCC
Q 014821 353 GIVVDGQTTPLKTDLVILATGF 374 (418)
Q Consensus 353 ~v~~~~g~~~~~~D~Vi~atG~ 374 (418)
.+++++|++ +++|.||+|||.
T Consensus 117 ~v~l~~G~~-i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 117 LIKLKDGRK-VETDHIVAAVGL 137 (137)
T ss_dssp EEEETTSCE-EEESEEEECCCE
T ss_pred EEEECCCCE-EECCEEEEeecC
Confidence 388899999 999999999993
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=1.4e-09 Score=94.52 Aligned_cols=120 Identities=20% Similarity=0.239 Sum_probs=71.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
.|||+|||||+||+.||.++++.|.++.||+.+- .+|+... .|.....- ...+.-. . ...-+....+..
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~c--np~~gg~~-kg~l~re---i----d~kG~av~a~ra 71 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL--PPKPPFPP-GSLLERA---Y----DPKDERVWAFHA 71 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS--CCCSCCCT-TCHHHHH---C----CTTCCCHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccccc--CCccccCC-Ccceeee---e----eccchhhhhHHH
Confidence 5899999999999999999999999999999863 2332211 11100000 0000000 0 011111122333
Q ss_pred HHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 YIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 ~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++...... ++ .+ +..+|+++...+ +....|.+.++ ..+.|+.||||||+
T Consensus 72 Q~k~~l~~~~nL--~i-~q~~V~dli~e~---------------------~~v~gV~t~~G-----~~~~AkaVILtTGT 122 (230)
T d2cula1 72 RAKYLLEGLRPL--HL-FQATATGLLLEG---------------------NRVVGVRTWEG-----PPARGEKVVLAVGS 122 (230)
T ss_dssp HHHHHHHTCTTE--EE-EECCEEEEEEET---------------------TEEEEEEETTS-----CCEECSEEEECCTT
T ss_pred HHHHHHhhhcCH--HH-HhccceeeEecc---------------------cceeeEEeccc-----cEEEEeEEEEccCc
Confidence 333343333 44 34 457888887766 23345667666 57999999999997
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
+
T Consensus 123 F 123 (230)
T d2cula1 123 F 123 (230)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.00 E-value=7.6e-10 Score=101.51 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
....+...+.+.+.+.|+ .++++++|++++..+ +..+.|.+.++ +++||+|
T Consensus 146 ~p~~l~~~l~~~a~~~gv--~i~~~~~V~~i~~~~---------------------~~v~~V~T~~g------~i~a~~V 196 (305)
T d1pj5a2 146 SAARAVQLLIKRTESAGV--TYRGSTTVTGIEQSG---------------------GRVTGVQTADG------VIPADIV 196 (305)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEET---------------------TEEEEEEETTE------EEECSEE
T ss_pred chhhhhhhHHhhhhcccc--cccCCceEEEEEEeC---------------------CEEEEEeccce------eEECCEE
Confidence 455677777788888898 899999999999887 23344665444 7999999
Q ss_pred EEeeccCC
Q 014821 155 ILCVGRFS 162 (418)
Q Consensus 155 IlAtG~~~ 162 (418)
|+|+|.++
T Consensus 197 V~aaG~~s 204 (305)
T d1pj5a2 197 VSCAGFWG 204 (305)
T ss_dssp EECCGGGH
T ss_pred EEecchhH
Confidence 99999874
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.99 E-value=1.2e-09 Score=100.88 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=85.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCccee------------cCCcc--------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTML------------QTPKQ-------------- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l------------~~~~~-------------- 56 (418)
.+||+|||+|++||++|+.|+++|.+|+|+||.+..||.-.....+... .++..
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d 98 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 98 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccc
Confidence 5799999999999999999999999999999987665431110000000 00000
Q ss_pred ----------------ccccCCCCCCC-----C--C------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEE
Q 014821 57 ----------------LYQFSDYPWPD-----S--V------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (418)
Q Consensus 57 ----------------~~~~~~~~~~~-----~--~------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 107 (418)
++.-...++.. . . .........+...|...+++.+. .++++++++++..
T Consensus 99 ~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~--~i~~~~~v~~l~~ 176 (317)
T d1qo8a2 99 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGI--DTRLNSRVVKLVV 176 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTC--CEECSEEEEEEEE
T ss_pred hhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccc--eeeeccchhheee
Confidence 00000011110 0 0 01112245678888888999998 8999999999877
Q ss_pred cCCCCcccccccccCCCCCCCCCCCc-eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 108 EGLSGEDEKSWSFWNGNGQPFGSRGK-WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ ++. .-|.+.+. ++....+.++.||||||.+.
T Consensus 177 ~~---------------------~g~V~Gv~~~~~-~~~~~~i~Ak~VVlAtGG~~ 210 (317)
T d1qo8a2 177 ND---------------------DHSVVGAVVHGK-HTGYYMIGAKSVVLATGGYG 210 (317)
T ss_dssp CT---------------------TSBEEEEEEEET-TTEEEEEEEEEEEECCCCCT
T ss_pred cc---------------------cccceeeEeecc-cceEEEEeccceEEeccccc
Confidence 55 122 22444443 35566899999999999763
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.97 E-value=2.3e-10 Score=106.02 Aligned_cols=40 Identities=40% Similarity=0.523 Sum_probs=37.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.++|+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 69 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 69 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCee
Confidence 5799999999999999999999999999999999999843
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.96 E-value=1.1e-09 Score=93.64 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=77.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+.+|.+|++.|.+++|+|+....... ++..+........+.. ........++...
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~el~~~ 72 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA-----PGGQLTTTTDVENFPG-------FPEGILGVELTDK 72 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC-----TTCGGGGCSEECCSTT-------CTTCEEHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccc-----cccccccchhhhcccc-------ccccccchHHHHH
Confidence 589999999999999999999999999999986532110 0100100000000000 1222346788888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++.+.+++. .+.+ ..|.+++... ..+.+.... ....+|.+++|+|..
T Consensus 73 ~~~q~~~~g~--~i~~-~~V~~~~~~~----------------------~~~~v~~~~------~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 73 FRKQSERFGT--TIFT-ETVTKVDFSS----------------------KPFKLFTDS------KAILADAVILAIGAV 120 (192)
T ss_dssp HHHHHHHTTC--EEEC-CCCCEEECSS----------------------SSEEEECSS------EEEEEEEEEECCCEE
T ss_pred HHHHHHhhcc--eeee-eeEEeccccc----------------------CcEEecccc------eeeeeeeEEEEeeee
Confidence 8888899988 6655 4677877655 446665444 478999999999965
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.96 E-value=2.7e-11 Score=103.89 Aligned_cols=44 Identities=25% Similarity=0.518 Sum_probs=39.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccccC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTV 46 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~~~ 46 (418)
.++|+|||||++||++|..|+++|+ +|+|||+++.+||.|....
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~ 48 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEI 48 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhc
Confidence 5799999999999999999999998 5999999999998877643
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.1e-09 Score=101.99 Aligned_cols=39 Identities=38% Similarity=0.693 Sum_probs=36.8
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
||+|||||++||++|+.|+++|++|+|||+++.+||...
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence 899999999999999999999999999999999998544
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.96 E-value=4.4e-09 Score=97.69 Aligned_cols=62 Identities=8% Similarity=0.128 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
..+...+.+.+.+.++ .++.++.++++..++ +....+.+.+..+|+..++.++.|||
T Consensus 158 ~~i~~~l~~~~~~~gv--~i~~~~~~~~li~~~---------------------~~v~g~~~~~~~~g~~~~i~Ak~Vvl 214 (336)
T d2bs2a2 158 HTMLFAVANECLKLGV--SIQDRKEAIALIHQD---------------------GKCYGAVVRDLVTGDIIAYVAKGTLI 214 (336)
T ss_dssp HHHHHHHHHHHHHHTC--EEECSEEEEEEEEET---------------------TEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred HHHHHHHHHHHHhccc--cccceeeeeeccccc---------------------ccccceeEEeccCCcEEEEecCeEEE
Confidence 4566677777888888 899999999988776 23344566666678888999999999
Q ss_pred eeccC
Q 014821 157 CVGRF 161 (418)
Q Consensus 157 AtG~~ 161 (418)
|||.+
T Consensus 215 ATGG~ 219 (336)
T d2bs2a2 215 ATGGY 219 (336)
T ss_dssp CCCCC
T ss_pred ecccc
Confidence 99965
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.95 E-value=2.4e-10 Score=90.11 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=35.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDY 246 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~ 246 (418)
.++++|+|||+|++|+|+|..|+..+.. |+++.|++.. +|..
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~---vt~i~~~~~~-l~~~ 61 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPL-KLIK 61 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTT-TTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchh---heEeeccchh-hccc
Confidence 4579999999999999999999988865 9999998853 3443
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.94 E-value=2e-09 Score=97.59 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=67.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCCCCCccccc---cCCcceecCCcccccc-CCCCCC--CCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARSDIGGAWIK---TVETTMLQTPKQLYQF-SDYPWP--DSVTTDFPD 75 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~~~gg~~~~---~~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~ 75 (418)
.+||+|||||++||++|+.|++ .|++|+|||+++.+||.|.. .++...+..+...+.. ...++. .........
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 4799999999999999999987 59999999999999998875 4555555444322110 011111 110112233
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcC
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
...+..++...+...+. .+...+.+..+....
T Consensus 113 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 144 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG 144 (278)
T ss_dssp HHHHHHHHHHHHTSTTE--EEEETEEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCcceeeeecC
Confidence 44555666666665555 577777777766554
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.94 E-value=1.1e-09 Score=86.41 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHh
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLAT 280 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (418)
.+.++|+|||+|.+|+|+|..|+..|.. ||++.+.++ ++++.. +. .
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~---Vtlie~~~~-~l~~~~------d~----~-------------------- 73 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDR-PLGVYL------DK----E-------------------- 73 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSS-TTTTTC------CH----H--------------------
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceE---EEEEEecCc-cccccc------ch----h--------------------
Confidence 4578999999999999999999998865 999999875 333321 00 0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc---EEE
Q 014821 281 MLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVV 356 (418)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~---v~~ 356 (418)
+...+.+.+++.+|+++.+. +.+++.++ ..+
T Consensus 74 ---------------------------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~ 108 (123)
T d1nhpa2 74 ---------------------------------------------FTDVLTEEMEANNITIATGETVERYEGDGRVQKVV 108 (123)
T ss_dssp ---------------------------------------------HHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEE
T ss_pred ---------------------------------------------hHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEE
Confidence 11112345677789999997 88887653 557
Q ss_pred cCCceeeeccEEEEcc
Q 014821 357 DGQTTPLKTDLVILAT 372 (418)
Q Consensus 357 ~~g~~~~~~D~Vi~at 372 (418)
.||++ +++|.||+|.
T Consensus 109 ~dg~~-i~~D~vi~aI 123 (123)
T d1nhpa2 109 TDKNA-YDADLVVVAV 123 (123)
T ss_dssp ESSCE-EECSEEEECS
T ss_pred eCCCE-EECCEEEEEC
Confidence 89998 9999999983
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.93 E-value=1.1e-09 Score=91.24 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=52.8
Q ss_pred hhhccCcEEEeccC-ceeEecC-cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeeeee
Q 014821 332 DKVEEGSIILKKSQ-DFSFCED-GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHI 409 (418)
Q Consensus 332 ~~~~~~~v~~~~~~-v~~~~~~-~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
+.++..+++++.+. +..++.+ .+.+.++++ +++|.+|+|+|..+. .++....+.. ++.+.++..+.+
T Consensus 60 ~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~-i~~D~li~a~G~~~~---------~~~~~~gl~~-~~~i~v~~~~~t 128 (167)
T d1xhca1 60 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGAPNV---------DLARRSGIHT-GRGILIDDNFRT 128 (167)
T ss_dssp HHHHHHTEEEECSCCEEEEETTTTEEEESSCE-EECSEEEECCCEECC---------HHHHHTTCCB-SSSEECCTTSBC
T ss_pred HHHHhccceeeeeccccccccccccccccccc-cccceeEEEEEecCC---------chhhhcCcee-CCceeeccccEe
Confidence 45556678888876 7777654 577788888 999999999998765 3344444422 345777777777
Q ss_pred ccCcccc
Q 014821 410 YIDTLTY 416 (418)
Q Consensus 410 ~~~~~~~ 416 (418)
+.|++|.
T Consensus 129 ~~~~i~a 135 (167)
T d1xhca1 129 SAKDVYA 135 (167)
T ss_dssp SSTTEEE
T ss_pred cCCCeEE
Confidence 8888884
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.92 E-value=4.4e-10 Score=96.55 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=73.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|+|||||++|+.+|..|++.+ .+|+++++++.+... ....+ .+. .........+..
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~-~~~~~-----------~~l--------~~~~~~~~~~~~ 60 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAGMQ-----------LYL--------EGKVKDVNSVRY 60 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGGHH-----------HHH--------TTSSCCGGGSBS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccc-ccCcc-----------hhh--------cccccchHHHHH
Confidence 36999999999999999999864 579999997643200 00000 000 000111112222
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+..+..++.++ +++.+++|.+++.+. -.|++.+..++...++.+|.+|+|+|..
T Consensus 61 ~~~~~l~~~gi--~v~~~~~V~~i~~~~------------------------~~v~~~~~~~g~~~~~~~D~li~a~G~~ 114 (198)
T d1nhpa1 61 MTGEKMESRGV--NVFSNTEITAIQPKE------------------------HQVTVKDLVSGEERVENYDKLIISPGAV 114 (198)
T ss_dssp CCHHHHHHTTC--EEEETEEEEEEETTT------------------------TEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred hhHHHHHHCCc--EEEEeeceeeEeecc------------------------ccceeeecccccccccccceeeEeecce
Confidence 22334455688 899999999998765 2466666666777899999999999965
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.90 E-value=5.6e-09 Score=93.97 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=77.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc-c-CCc-ce----------------------ecCCcc-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK-T-VET-TM----------------------LQTPKQ- 56 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~-~-~~~-~~----------------------l~~~~~- 56 (418)
.||+|||||++||++|..|+++|+ +|+|+|+.+.++..+.. . .++ .. ...+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 689999999999999999999997 89999998876543321 0 000 00 000000
Q ss_pred -ccccCCCCCCCCCCC-CCCChhHHHHHHHH-HH-HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 57 -LYQFSDYPWPDSVTT-DFPDHNQVLDYIQS-YA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 57 -~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
...+........... ...........+.. .. ...+. .+.++++++.+.... +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~----------------------~ 137 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ--AVRTGLGVERIEERD----------------------G 137 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTT--SEEESEEEEEEEEET----------------------T
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCe--eeecCcEEEEeeecC----------------------C
Confidence 000000000000000 00111122222222 22 22355 688889999988776 5
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...+.+.++. +..+++.+|.||.|.|..|
T Consensus 138 ~v~v~~~~g~-~~~~~~~ad~vi~ADG~~S 166 (288)
T d3c96a1 138 RVLIGARDGH-GKPQALGADVLVGADGIHS 166 (288)
T ss_dssp EEEEEEEETT-SCEEEEEESEEEECCCTTC
T ss_pred cEEEEEEcCC-CCeEEEeeceeeccCCccc
Confidence 5677777753 4557899999999999885
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=5e-10 Score=88.72 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=35.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDY 246 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~ 246 (418)
..+++++|||+|++|+|+|..|...|.. |+++.|+++ ++|.+
T Consensus 20 ~~pk~vvIvGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~-~l~~~ 61 (125)
T d3grsa2 20 ELPGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDK-VLRSF 61 (125)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS-SCTTS
T ss_pred hcCCEEEEEcCCccHHHHHHHHhcCCcE---EEEEeeccc-cccch
Confidence 3468999999999999999999998876 999999986 44543
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=5.6e-09 Score=96.12 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
.+||+|||+|.|||.+|..+++. +.+|+|+||....+
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~ 43 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 58999999999999999999986 67899999976443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.87 E-value=2.5e-09 Score=91.71 Aligned_cols=86 Identities=9% Similarity=-0.087 Sum_probs=58.3
Q ss_pred hhhhccCcEEEeccC-ceeEecC--cEEE---cCCc-eeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccc
Q 014821 331 YDKVEEGSIILKKSQ-DFSFCED--GIVV---DGQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPL 403 (418)
Q Consensus 331 ~~~~~~~~v~~~~~~-v~~~~~~--~v~~---~~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 403 (418)
.+.+++.+|+++.+. +..++.+ +|++ .+|+ ..+.+|.+|+|+|..+...........++...+.-+.++++.+
T Consensus 63 ~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~v 142 (198)
T d1nhpa1 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKT 142 (198)
T ss_dssp HHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCC
T ss_pred HHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceec
Confidence 356677889998876 7788753 4554 3443 2378999999999876533222233444554443356788999
Q ss_pred eeeeeeccCcccc
Q 014821 404 YRSAHIYIDTLTY 416 (418)
Q Consensus 404 ~~~~~~~~~~~~~ 416 (418)
+..+.+++|+||.
T Consensus 143 d~~~~T~~~~IyA 155 (198)
T d1nhpa1 143 DEYMRTSEPDVFA 155 (198)
T ss_dssp CTTCBCSSTTEEE
T ss_pred CCcccccccceEE
Confidence 8888889999985
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.2e-09 Score=92.29 Aligned_cols=113 Identities=17% Similarity=0.283 Sum_probs=74.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
|||+|||||++|+.+|.++++.|.+++|||++ +||.+...... ..+.. ........+...+
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~~~---------~~~~~--------~~~~~~~~~~~~~ 62 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDI---------ENYIS--------VPKTEGQKLAGAL 62 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEE---------CCBTT--------BSSEEHHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccccc---------eeccc--------cchhhhHHHHHHH
Confidence 79999999999999999999999999999984 56655442110 00000 0112235666777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+..+++++. .......+..+..... ....+.....+. .++.++.+++++|..
T Consensus 63 ~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~-----~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 63 KVHVDEYDV--DVIDSQSASKLIPAAV-------------------EGGLHQIETASG-----AVLKARSIIVATGAK 114 (184)
T ss_dssp HHHHHTSCE--EEECSCCEEEEECCSS-------------------TTCCEEEEETTS-----CEEEEEEEEECCCEE
T ss_pred HHHhhheec--eeeccceeeeeccccc-------------------ccceeeeeeecc-----eeeeccccccccccc
Confidence 777787776 5555566666665430 012233333333 589999999999965
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1.6e-09 Score=85.24 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=36.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYF 247 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~ 247 (418)
..+++++|||+|++|+|+|..|...|.. ||++.++++ ++|...
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~~---Vtii~~~~~-~l~~~d 63 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQ-IGASMD 63 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS-SSSSSC
T ss_pred cCCCeEEEECCCchHHHHHHHHHhhCcc---eeEEEeccc-cchhhh
Confidence 4578999999999999999999999876 999999886 445443
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.84 E-value=2e-09 Score=96.61 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=39.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.||++|||||++|+.+|..|++.|.+++++|+.+.+||.+..
T Consensus 41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n 83 (261)
T d1mo9a1 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH 83 (261)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccc
Confidence 3689999999999999999999999999999999999997654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.83 E-value=1.5e-10 Score=101.18 Aligned_cols=43 Identities=26% Similarity=0.552 Sum_probs=40.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++|||+||||||+|+++|..+++.|.+++|||++..+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~ 44 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN 44 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence 5799999999999999999999999999999999999997665
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.82 E-value=1.2e-09 Score=96.02 Aligned_cols=74 Identities=24% Similarity=0.245 Sum_probs=54.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
.+|+|||||+|||+||.+|++. +.+|+|||+.+.+||.+.+..+ ..+.....+..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~-----------------------~~~~~~~~~~~ 58 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKNVIN 58 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGGHHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhcc-----------------------ccccccccchh
Confidence 5799999999999999999875 6799999999999998766322 22233345666
Q ss_pred HHHHHHHhcCcccceEeeeEE
Q 014821 82 YIQSYASHFDLRKHIKFNRKV 102 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v 102 (418)
+......+.+. .+..++.|
T Consensus 59 ~~~~~~~~~~~--~~~~~~~v 77 (230)
T d1cjca2 59 TFTQTARSDRC--AFYGNVEV 77 (230)
T ss_dssp HHHHHHTSTTE--EEEBSCCB
T ss_pred hhhhhhhcCCe--eEEeeEEe
Confidence 66666666676 56655543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.81 E-value=1.8e-09 Score=84.46 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=35.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPD 245 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~ 245 (418)
..+++++|||+|++|+|+|..+...|.. ||++.|+++ ++|.
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~-il~~ 60 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGE-ILSG 60 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSS-SSTT
T ss_pred hcCCeEEEECCCccceeeeeeecccccE---EEEEEecce-eccc
Confidence 4578999999999999999999998875 999999986 3443
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.2e-09 Score=86.39 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=47.2
Q ss_pred CCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 175 GPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
|.++|.+.-+|.+..++ ...+++|+|+|||+|.+|+|.|..|..... +|++++|++.+
T Consensus 5 ge~~~~gkgV~yca~cD------~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~ 62 (126)
T d1trba2 5 SEEAFKGRGVSACATSD------GFFYRNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGF 62 (126)
T ss_dssp HHHHTBTTTEESCHHHH------GGGGTTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSC
T ss_pred CHHHhcCCCEEEEEecc------hHHhCCCEEEEECCCHHHHHHHHHHhhcCC---cEEEEeecccc
Confidence 77788887777443332 567899999999999999999999988764 59999998853
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=3.4e-09 Score=92.01 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=53.8
Q ss_pred hhhhccCcEEEeccC-ceeEec--CcEEEcCCceeeeccEEEEccCCCCCc-chhccccchhhhhhhcC--CCCCCccce
Q 014821 331 YDKVEEGSIILKKSQ-DFSFCE--DGIVVDGQTTPLKTDLVILATGFKGDV-KLKNIFLSQTFQDYLAG--SPTEKLPLY 404 (418)
Q Consensus 331 ~~~~~~~~v~~~~~~-v~~~~~--~~v~~~~g~~~~~~D~Vi~atG~~~~~-~~~~~l~~~~~~~~~~~--~~~~~~~~~ 404 (418)
...+++.+|+++.+. |..++. +.|.++||++ +++|.||+|||..+.. .+.. ...+. ...+.+.++
T Consensus 90 ~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~-i~~d~lViAtG~~~~~~~l~~--------~~gl~~~~~~~~i~vd 160 (213)
T d1m6ia1 90 LPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQ-ITYEKCLIATGGTEPNVELAK--------TGGLEIDSDFGGFRVN 160 (213)
T ss_dssp TTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCE-EEEEEEEECCCEEEECCTTHH--------HHTCCBCTTTCSEECC
T ss_pred HHHHHHCCeEEEeCCEEEEeeccCceeeecccee-eccceEEEeeeeecchhhhhh--------ccchhhhhhhhhhhhh
Confidence 356678889999997 888864 4699999999 9999999999976542 2222 22221 234677777
Q ss_pred eeeeeccCcccc
Q 014821 405 RSAHIYIDTLTY 416 (418)
Q Consensus 405 ~~~~~~~~~~~~ 416 (418)
..+.++ |+||.
T Consensus 161 ~~l~~~-~~VyA 171 (213)
T d1m6ia1 161 AELQAR-SNIWV 171 (213)
T ss_dssp TTCEEE-TTEEE
T ss_pred HhcCcC-CceEE
Confidence 776555 78874
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=3.4e-09 Score=83.78 Aligned_cols=62 Identities=26% Similarity=0.346 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 168 PEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 168 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
+++| |.++|.+.-++.+..++ ...+++|+|+|||+|.+|+|.|..|..... +|++++|++.+
T Consensus 4 L~ip---ge~~~~gkGV~yca~cD------~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~---~V~li~r~~~~ 65 (126)
T d1fl2a2 4 MNVP---GEDQYRTKGVTYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVE---HVTLLEFAPEM 65 (126)
T ss_dssp CCCT---TTTTTBTTTEESCHHHH------GGGGBTCEEEEECCSHHHHHHHHHHHTTBS---EEEEECSSSSC
T ss_pred CCCC---CHHHhcCCCEEEEEecC------hhhcCCceEEEEeCCHHHHHHHHhhhccCC---ceEEEeccccc
Confidence 4455 88899888777443332 567899999999999999999999988764 59999998753
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=3.4e-09 Score=87.83 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 165 PNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 165 p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
|+.|++| |.+. +.++++.++.. .....+++|+|||+|++|+|+|..+...|..
T Consensus 2 Pr~p~Ip---G~d~--~~V~~a~d~L~------~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~ 54 (162)
T d1ps9a2 2 PRTPPID---GIDH--PKVLSYLDVLR------DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES 54 (162)
T ss_dssp ECCCCCB---TTTS--TTEEEHHHHHT------SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred CCCCCCC---CCCC--CCeEEHHHHhh------CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence 6778888 7663 45777665533 2446789999999999999999999988764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.77 E-value=3.2e-09 Score=83.68 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=36.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDY 246 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~ 246 (418)
..+++++|||+|.+|+|+|..+...|.. ||++.|++..+ |..
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~~~G~~---Vtvi~~~~~~l-~~~ 64 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV-PTM 64 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-TTS
T ss_pred ccCCeEEEEccchHHHHHHHHHHhcCCe---EEEEEEccccC-chh
Confidence 4578999999999999999999999976 99999998743 543
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=4e-08 Score=91.02 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|+|||.+|..++++|.+|+|+||.+..++
T Consensus 7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg 44 (330)
T d1neka2 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44 (330)
T ss_dssp EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999765543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=4.7e-09 Score=92.54 Aligned_cols=43 Identities=14% Similarity=0.343 Sum_probs=40.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.+||||||||++|+++|..|+++|++|+|||+++.+||.+..
T Consensus 4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t 46 (297)
T d2bcgg1 4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 46 (297)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEE
Confidence 4799999999999999999999999999999999999997654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=1.3e-08 Score=79.92 Aligned_cols=42 Identities=21% Similarity=0.058 Sum_probs=34.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYF 247 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~ 247 (418)
..+++++|||+|.+|+|+|..|...|.. |+++.|+. ++|.+.
T Consensus 18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~~---Vtii~~~~--~l~~~D 59 (122)
T d1h6va2 18 YCPGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSI--LLRGFD 59 (122)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSS--SSTTSC
T ss_pred cCCCeEEEECCCccHHHHHHHHhhcCCe---EEEEEech--hhccCC
Confidence 4578999999999999999999999876 99999753 445443
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=8.2e-10 Score=96.07 Aligned_cols=125 Identities=10% Similarity=0.194 Sum_probs=69.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccc-cCCcceec--CCcc--ccccCCCCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIK-TVETTMLQ--TPKQ--LYQFSDYPWPDSVTTDFPD 75 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~-~~~~~~l~--~~~~--~~~~~~~~~~~~~~~~~~~ 75 (418)
.+++||||||++|+.+|..|++++. +|++|++.+.+- +.+ ..+...+. .+.. ...+........ ...+.+
T Consensus 4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p--y~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (213)
T d1m6ia1 4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP--YMRPPLSKELWFSDDPNVTKTLRFKQWNGKER-SIYFQP 80 (213)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC--BCSGGGGTGGGCC--CTHHHHCEEECTTSCEE-ESBSSC
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC--ccccccceecccccCchhhhhhhhhhcccchh-hhhcCC
Confidence 4789999999999999999998776 699999865321 000 00000000 0000 000000000000 000000
Q ss_pred hhHH-HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 76 HNQV-LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 76 ~~~~-~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
...+ ........++.++ .++++++|++|+... .+|++.++ .++.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~gI--~~~~g~~V~~id~~~------------------------~~V~l~dG-----~~i~~d~l 129 (213)
T d1m6ia1 81 PSFYVSAQDLPHIENGGV--AVLTGKKVVQLDVRD------------------------NMVKLNDG-----SQITYEKC 129 (213)
T ss_dssp GGGSBCTTTTTTSTTCEE--EEEETCCEEEEEGGG------------------------TEEEETTS-----CEEEEEEE
T ss_pred hhhhhhhhhHHHHHHCCe--EEEeCCEEEEeeccC------------------------ceeeeccc-----eeeccceE
Confidence 0000 0001122345577 788899999998766 36788777 68999999
Q ss_pred EEeeccC
Q 014821 155 ILCVGRF 161 (418)
Q Consensus 155 IlAtG~~ 161 (418)
|+|+|..
T Consensus 130 ViAtG~~ 136 (213)
T d1m6ia1 130 LIATGGT 136 (213)
T ss_dssp EECCCEE
T ss_pred EEeeeee
Confidence 9999964
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.69 E-value=1e-09 Score=91.40 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=63.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQ 84 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (418)
+|||||||++|+.+|..|++ +.+|+|+++.+.+.. ..+. + ..+. ........+..+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~----~~~~--~------~~~~---------~~~~~~~~~~~~~~ 59 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY----SKPM--L------SHYI---------AGFIPRNRLFPYSL 59 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC----CSTT--H------HHHH---------TTSSCGGGGCSSCH
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc----cccc--h------hhhh---------hhhhhhhhhhHHHH
Confidence 69999999999999999975 679999998652210 0000 0 0000 00111112222333
Q ss_pred HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 85 SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 85 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
....+.+. .+++++.+..++... . +...++ .++.||.||+|+|..
T Consensus 60 ~~~~~~~v--~~~~~~~v~~i~~~~------------------------~-~~~~~~-----~~i~~D~li~a~G~~ 104 (167)
T d1xhca1 60 DWYRKRGI--EIRLAEEAKLIDRGR------------------------K-VVITEK-----GEVPYDTLVLATGAP 104 (167)
T ss_dssp HHHHHHTE--EEECSCCEEEEETTT------------------------T-EEEESS-----CEEECSEEEECCCEE
T ss_pred HHHHhccc--eeeeecccccccccc------------------------c-cccccc-----cccccceeEEEEEec
Confidence 34445576 788888888887544 2 333344 479999999999965
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.69 E-value=5.2e-09 Score=91.19 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=37.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++|+.+|..+++.|.+|+|+|++ .+||.+..
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~ 45 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLN 45 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcccc
Confidence 589999999999999999999999999999995 68987665
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.68 E-value=3.7e-08 Score=82.82 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=49.5
Q ss_pred hhccCcEEEeccC-ceeEecC--cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeeeee
Q 014821 333 KVEEGSIILKKSQ-DFSFCED--GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHI 409 (418)
Q Consensus 333 ~~~~~~v~~~~~~-v~~~~~~--~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
........+..+. +..++.+ .+...++.+ +++|.+++|+|..+..... .++....+ ..++.+.++..+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-i~~d~~i~~~G~~~~~~~~-----~~~~~~~~-~~~~~i~Vd~~~~t 140 (185)
T d1q1ra1 68 AYAAQNIQLLGGTQVTAINRDRQQVILSDGRA-LDYDRLVLATGGRPLIPNC-----ELASAAGL-QVDNGIVINEHMQT 140 (185)
T ss_dssp HHHHTTEEEECSCCEEEEETTTTEEEETTSCE-EECSEEEECCCEEEEEECC-----HHHHHTTC-CBSSSEECCTTSBC
T ss_pred hhcccceeeeccceeeeecccccEEEeeceeE-EEeeeeeeeeecccCCCCc-----hhHHhCCc-cccCccccCCcccc
Confidence 3344555555554 4444443 478888888 9999999999987642211 22233333 33566778877778
Q ss_pred ccCcccc
Q 014821 410 YIDTLTY 416 (418)
Q Consensus 410 ~~~~~~~ 416 (418)
++|++|.
T Consensus 141 s~~~vya 147 (185)
T d1q1ra1 141 SDPLIMA 147 (185)
T ss_dssp SSTTEEE
T ss_pred chhhhhc
Confidence 8999984
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.62 E-value=1.2e-08 Score=92.61 Aligned_cols=48 Identities=38% Similarity=0.606 Sum_probs=41.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCccee
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTML 51 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l 51 (418)
|+|+|||||++||++|+.|++.|++|+|||+++.+||.... ..++..+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~ 50 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIW 50 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEE
Confidence 67999999999999999999999999999999999997654 4444444
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.56 E-value=2.3e-08 Score=88.75 Aligned_cols=50 Identities=32% Similarity=0.502 Sum_probs=42.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc-cCCcceecC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK-TVETTMLQT 53 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~-~~~~~~l~~ 53 (418)
.||+|||||++||++|..|+++|+ +|+|||+++.+||.+.. ..++..+..
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~ 52 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 52 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEES
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEec
Confidence 389999999999999999999997 69999999999997765 555554443
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.56 E-value=1.1e-08 Score=84.06 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=46.3
Q ss_pred eeccCCCCCCCC-CCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEE--cCCCCHHHHHHHHhhhcCCCCCeE
Q 014821 157 CVGRFSDVPNIP-EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVV--GLQKSALDIAMECTTANGLENPCT 233 (418)
Q Consensus 157 AtG~~~~~p~~p-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv--G~G~sa~e~a~~l~~~~~~~~~V~ 233 (418)
|||+. |..| ++| |.+.-..+++.+.+... .+...++.++|+ |+|.+|+|+|..|+..|.. ||
T Consensus 4 atG~~---~~~~~pip---G~~~~~~~v~t~~d~l~------~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~---Vt 68 (156)
T d1djqa2 4 TDGTN---CLTHDPIP---GADASLPDQLTPEQVMD------GKKKIGKRVVILNADTYFMAPSLAEKLATAGHE---VT 68 (156)
T ss_dssp SSCCC---TTTSSCCT---TCCTTSTTEECHHHHHH------TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE---EE
T ss_pred CCCCC---CCCCCCCC---CccCCCCEEECHHHHhc------CccccCCceEEEecCCChHHHHHHHHHHHcCCe---EE
Confidence 78865 4443 456 66543234554333221 233456677776 9999999999999999976 99
Q ss_pred EEEecCc
Q 014821 234 VLYRTEH 240 (418)
Q Consensus 234 ~~~r~~~ 240 (418)
++.+.+.
T Consensus 69 lv~~~~~ 75 (156)
T d1djqa2 69 IVSGVHL 75 (156)
T ss_dssp EEESSCT
T ss_pred EEecCCc
Confidence 9999763
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.1e-08 Score=91.65 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=39.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++||++|..|+++|++|+|||+++.+||....
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t 42 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence 489999999999999999999999999999999999998665
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.6e-08 Score=87.85 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=38.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|..|||+|||||++|+++|.++++.|.+|+|+|+ ..+||.+..
T Consensus 1 ~~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n 43 (221)
T d3grsa1 1 VASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVN 43 (221)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred CCccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcccc
Confidence 4579999999999999999999999999999999 567776544
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3.6e-08 Score=90.88 Aligned_cols=49 Identities=31% Similarity=0.475 Sum_probs=41.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCccee
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTML 51 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l 51 (418)
..+|||||||++||+||+.|+++|++|+|||+++++||.... ..++..+
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~ 54 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVA 54 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEE
Confidence 568999999999999999999999999999999999996444 3444333
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.53 E-value=2e-07 Score=81.54 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=32.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.|||+||||||+|+++|.++++.|.+|+|||+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 48999999999999999999999999999998654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.52 E-value=6.4e-08 Score=84.91 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=34.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC---CceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG---FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~---~~v~iie~~~~~gg~~~~ 44 (418)
.+|+||||||+|++||.++++.+ .+|+++|+ ..+||.|..
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln 44 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVL 44 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeec
Confidence 68999999999999999988755 57999999 579997665
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.5e-07 Score=85.97 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=32.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|+|||++|+.+++.+ +|+||||.+..||
T Consensus 7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG 43 (305)
T d1chua2 7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG 43 (305)
T ss_dssp ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-
T ss_pred cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCC
Confidence 589999999999999999998877 9999999886655
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.8e-08 Score=86.88 Aligned_cols=42 Identities=26% Similarity=0.541 Sum_probs=39.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|||+|||||+||+++|.+|++.|.+|+|||+++.+||.+..
T Consensus 5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~ 46 (233)
T d1v59a1 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN 46 (233)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence 699999999999999999999999999999999999997765
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.50 E-value=1.1e-08 Score=86.28 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=28.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+|+|||||++|+.+|..|++.+.++.|++..+
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~ 36 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD 36 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence 3569999999999999999999988776666544
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.46 E-value=6.2e-08 Score=89.02 Aligned_cols=43 Identities=37% Similarity=0.559 Sum_probs=39.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.++|+|||||++||++|..|++.|++|+|||+++.+||.+..
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t 43 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 43 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeE
Confidence 4688999999999999999999999999999999999997654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.46 E-value=1.5e-08 Score=84.86 Aligned_cols=34 Identities=29% Similarity=0.614 Sum_probs=30.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSD 37 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~ 37 (418)
++|||||||++|+.+|..|++.+ .+|+++|+++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 68999999999999999999976 47999999763
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.45 E-value=9.5e-07 Score=82.02 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHh----CCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL----KGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~----~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|+|||++|..|++ +|.+|+|+||....|+
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg 62 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence 4799999999999999999975 6899999999775543
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.40 E-value=1.5e-07 Score=74.29 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=42.7
Q ss_pred CCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 179 FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
|.+.-++ |+..++.. ...+++|+|+|||+|.+|+|.|..|..... +|++++|++.+
T Consensus 14 f~gkGVs---yca~CDg~-a~~frgk~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~ 69 (130)
T d1vdca2 14 FWNRGIS---ACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGS---KVYIIHRRDAF 69 (130)
T ss_dssp CBTTTEE---SCHHHHTT-SGGGTTSEEEEECCSHHHHHHHHHHTTTSS---EEEEECSSSSC
T ss_pred ccCCcEE---EEEEecCc-hHHhCCCEEEEEcCchHHHHHHHHHhCCCC---cEEEEEecccc
Confidence 6666677 44433100 137899999999999999999999988764 59999998864
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.37 E-value=1.3e-07 Score=82.09 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
++|||+|||||||||+||.+|++.|.+|+|||+....
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~ 38 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK 38 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 6899999999999999999999999999999986543
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.37 E-value=1.7e-06 Score=81.23 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=66.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHh------CCCceEEEeeCCCCCccccc-----------cCCcceec-------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL------KGFHPIVFEARSDIGGAWIK-----------TVETTMLQ------------- 52 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~------~~~~v~iie~~~~~gg~~~~-----------~~~~~~l~------------- 52 (418)
.+||+||||||||+++|+.|++ .|++|+||||...+|..... ..|.....
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~ 111 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 111 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceE
Confidence 3799999999999999999997 79999999999877532111 11111100
Q ss_pred ---CCccccccCCCC-CCC-CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcC
Q 014821 53 ---TPKQLYQFSDYP-WPD-SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 53 ---~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
.......+...+ ... ...........+..++...++..+. .+.....+.++...+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~--~~~~~~~~~~~l~~~ 171 (380)
T d2gmha1 112 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHE 171 (380)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECT
T ss_pred EEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccc--eeeeecceeeeeecc
Confidence 000000011111 000 0022234677888889999998888 777777888887755
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.35 E-value=1.4e-07 Score=82.42 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=38.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.|||+||||||+||++|.+|++.|++|+|||+...+||.+..
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~ 47 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN 47 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence 589999999999999999999999999999998888886543
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=98.33 E-value=1.9e-06 Score=80.45 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
.+|+||||+|++|+.+|..|++.|++|+|+|+.
T Consensus 7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 589999999999999999999999999999985
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.33 E-value=3.4e-07 Score=76.68 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
..+|||||||++|+.+|..|++.+.+++|++..+..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence 579999999999999999999999998888876543
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=98.29 E-value=1.2e-06 Score=81.83 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=31.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.||||||+|++|+.+|.+|++.|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 589999999999999999999999999999964
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=1.1e-05 Score=62.98 Aligned_cols=99 Identities=15% Similarity=0.242 Sum_probs=74.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|-+++..|..|.+...+|+++-|++.+ .......+.
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~-----------------------------------~~~~~~~~~ 71 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-----------------------------------RAEKILIKR 71 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-----------------------------------CCCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc-----------------------------------cchhHHHHH
Confidence 579999999999999999999999999999987522 112345566
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc-eeEEEeCEEEEeec
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS-TEVHQVDFVILCVG 159 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~i~~d~vIlAtG 159 (418)
++.....-++ .+..++.+.++..++ ...-.|.+.+.+++. .+++.+|-|+++.|
T Consensus 72 ~~~~~~~~~i--~~~~~~~v~~i~G~~---------------------~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 72 LMDKVENGNI--ILHTNRTLEEVTGDQ---------------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp HHHHHHTSSE--EEECSCEEEEEEECS---------------------SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred HHHhhcccce--eEecceEEEEEECCC---------------------CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 6665555566 677889999999865 123347777765444 46899999999987
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.22 E-value=3.9e-07 Score=78.69 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=36.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++||+||||||+|+++|.++++.|.+++|||+ ..+||.+..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk-~~~GG~~~~ 43 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLN 43 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-CCCCcceec
Confidence 58999999999999999999999999999999 468886554
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=6.5e-06 Score=64.30 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=72.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|.+++..|..|++...+|+|+-+++.+- ....
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~-----------------------------------~~~~---- 70 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-----------------------------------ADQV---- 70 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-----------------------------------SCHH----
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc-----------------------------------cccc----
Confidence 4799999999999999999999988999998865221 1112
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+.+.+... ++ .+.+++++.++..++ ...-.|.+.+..+++.+++.+|.|+++.|
T Consensus 71 ~~~~~~~~~~I--~v~~~~~v~~i~G~~---------------------~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 71 LQDKLRSLKNV--DIILNAQTTEVKGDG---------------------SKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp HHHHHHTCTTE--EEESSEEEEEEEESS---------------------SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred cccccccccce--eEEcCcceEEEEccc---------------------cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 22223333 45 788999999999865 23344777887778889999999999988
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.20 E-value=6.4e-07 Score=78.97 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|||||||++||++|..|+++|.+|+|||+..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5799999999999999999999999999999965
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.19 E-value=4.2e-06 Score=68.03 Aligned_cols=71 Identities=8% Similarity=-0.047 Sum_probs=52.1
Q ss_pred ccEEEE--cCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIV--GAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvII--G~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
..++|+ |||+.|+.+|..|+++|.+|+|+++.+.++.... .....
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~---------------------------------~~~~~ 86 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF---------------------------------TLEYP 86 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH---------------------------------TTCHH
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc---------------------------------hhHHH
Confidence 345555 9999999999999999999999999764432100 12233
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
.+...+.+.++ ++.+++++.+++...
T Consensus 87 ~~~~~l~~~GV--~i~~~~~v~~i~~~~ 112 (156)
T d1djqa2 87 NMMRRLHELHV--EELGDHFCSRIEPGR 112 (156)
T ss_dssp HHHHHHHHTTC--EEEETEEEEEEETTE
T ss_pred HHHHHHhhccc--eEEeccEEEEecCcc
Confidence 45555666788 899999999998644
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=2.2e-06 Score=70.22 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=23.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH 28 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~ 28 (418)
++|+|||||..|+-+|..|++.|.+
T Consensus 30 krVvVIGgG~~g~d~a~~~~r~G~~ 54 (162)
T d1ps9a2 30 NKVAIIGCGGIGFDTAMYLSQPGES 54 (162)
T ss_dssp SEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred CceEEEcCchhHHHHHHHHHHcCCc
Confidence 6899999999999999999998874
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.08 E-value=5.2e-06 Score=73.61 Aligned_cols=79 Identities=8% Similarity=-0.062 Sum_probs=50.3
Q ss_pred cCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhcccc--chhhhhhhcC-CCCCCccceeeeeeccC
Q 014821 336 EGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFL--SQTFQDYLAG-SPTEKLPLYRSAHIYID 412 (418)
Q Consensus 336 ~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 412 (418)
.+...+..+....++...+. .+|++ +++|.||+|||.+|+....+... ..+.+...+. +.++.+.++..+.+++|
T Consensus 147 ~~~~~~~~g~~~~~d~~~v~-~~g~~-i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~ 224 (261)
T d1mo9a1 147 LNLEYILNCPAKVIDNHTVE-AAGKV-FKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVP 224 (261)
T ss_dssp SCCCEEESSCCEEEETTEEE-ETTEE-EEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSST
T ss_pred ccceeEeeeEEEEeeecccc-cccce-EeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCcccCCC
Confidence 34444555544444444444 46778 99999999999999855433322 1112222232 45788999988899999
Q ss_pred cccc
Q 014821 413 TLTY 416 (418)
Q Consensus 413 ~~~~ 416 (418)
|||.
T Consensus 225 ~IyA 228 (261)
T d1mo9a1 225 NVYA 228 (261)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 9995
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=6.1e-06 Score=69.51 Aligned_cols=78 Identities=9% Similarity=-0.052 Sum_probs=45.5
Q ss_pred ccCcEEEeccCceeEecC--cEEE-cCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceee-eeec
Q 014821 335 EEGSIILKKSQDFSFCED--GIVV-DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRS-AHIY 410 (418)
Q Consensus 335 ~~~~v~~~~~~v~~~~~~--~v~~-~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 410 (418)
++-++++..+.|..++.. .... .+... ..+|.+++++|...... .-...++...+--+.++++.+... +.++
T Consensus 78 ~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~-~~~~~~~~a~g~~~~g~---~p~~~~~~~~veld~~G~i~~~~~~~~Ts 153 (192)
T d1vdca1 78 ERFGTTIFTETVTKVDFSSKPFKLFTDSKA-ILADAVILAIGAVAKGH---EPATKFLDGGVELDSDGYVVTKPGTTQTS 153 (192)
T ss_dssp HHTTCEEECCCCCEEECSSSSEEEECSSEE-EEEEEEEECCCEEECCE---EESCGGGTTSSCBCTTSCBCCCTTSCBCS
T ss_pred HhhcceeeeeeEEecccccCcEEeccccee-eeeeeEEEEeeeeeccc---CchHHHhcCceeecCCCeEEeCCCceEec
Confidence 344566666666666533 2333 34445 89999999999753210 001222222222256777877754 4999
Q ss_pred cCcccc
Q 014821 411 IDTLTY 416 (418)
Q Consensus 411 ~~~~~~ 416 (418)
+||||.
T Consensus 154 ~~GV~a 159 (192)
T d1vdca1 154 VPGVFA 159 (192)
T ss_dssp STTEEE
T ss_pred CCCEEE
Confidence 999985
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.01 E-value=4.4e-06 Score=67.69 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+++|+|||||.+|+|.|..+...|. ++|++++|++.
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA--~~V~vi~rr~~ 80 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGA--RRVFLVFRKGF 80 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTC--SEEEEECSSCG
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCC--cceeEEEeCCh
Confidence 46789999999999999999988776 46999999775
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.00 E-value=5.4e-06 Score=72.69 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=37.4
Q ss_pred chhhhhccCcEEEeccC-ceeEe--cC---cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 329 KFYDKVEEGSIILKKSQ-DFSFC--ED---GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 329 ~~~~~~~~~~v~~~~~~-v~~~~--~~---~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
.+.+.+++.+++++.+. +..+. ++ .|.+++|++ +++|.||.|||-..-+
T Consensus 115 ~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~-i~a~~vI~AtGg~S~p 169 (251)
T d2i0za1 115 ALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEV-LETNHVVIAVGGKSVP 169 (251)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCE-EECSCEEECCCCSSSG
T ss_pred HHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCe-EecCeEEEccCCcccc
Confidence 44566777889999886 66654 33 367889998 9999999999987654
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=2.3e-06 Score=78.04 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=38.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++||++|..|+++ |++|+|||+++.+||.+..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence 47999999999999999999974 8999999999999987654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.94 E-value=3.7e-06 Score=76.11 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+...|+|||+|.+|+-+|..|.+.|.. |+++.+.+
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~---v~i~Ek~~ 40 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAG 40 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEEcCC
Confidence 345799999999999999999998876 99999864
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.93 E-value=3.1e-06 Score=78.76 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=34.2
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
|+ ++||||||+|++|+.+|..|++.|++|+|+|+....
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 44 689999999999999999999999999999996533
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.92 E-value=3.8e-06 Score=72.95 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
++|||+||||||||+++|.++++.+. +|+|+|+.
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~ 36 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ 36 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence 67999999999999999999999876 67888874
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.91 E-value=3.2e-05 Score=62.41 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=29.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
..+|||||||.+|+-+|..|.++|. .++++.+++
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 3579999999999999999999986 588888864
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=8.7e-06 Score=68.34 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
++++|+|||+|++|+++|..+.+.+.. |+++.+..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~---v~iie~~~ 38 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGME 38 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEEeec
Confidence 467899999999999999999998865 99998654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.86 E-value=4.5e-06 Score=76.96 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHH-----hCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLL-----LKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~-----~~~~~v~iie~~~~~ 38 (418)
.|||+|||||++|+++|..|+ +.|++|+|||+++.+
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 489999999999999999997 469999999998755
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.83 E-value=1.8e-05 Score=67.83 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=47.7
Q ss_pred hhccCcEEEeccCceeEecCcEEE----cCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeee
Q 014821 333 KVEEGSIILKKSQDFSFCEDGIVV----DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSA 407 (418)
Q Consensus 333 ~~~~~~v~~~~~~v~~~~~~~v~~----~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 407 (418)
.+...+++++.............. .++.+ +.+|.||+|||.++.-. .+....-.+++..+. +..+.+.++..+
T Consensus 102 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~a~~VIiATGs~~~gr-~p~~~~l~l~~~gv~~~~~G~i~vd~~~ 179 (221)
T d1dxla1 102 LFKKNKVTYVKGYGKFVSPSEISVDTIEGENTV-VKGKHIIIATGSDVKGR-TPFTSGLNLDKIGVETDKLGRILVNERF 179 (221)
T ss_dssp HHHHHTCEEEESCEEEEETTEEEECCSSSCCEE-EECSEEEECCCEEECCE-EECCTTSCCTTTTCCBCSSSCBCCCTTC
T ss_pred hhhcCCeEEEEeccccccccccccccccccccc-cccceEEEeECCCccCc-cccCCCCChHhcCceEcCCCcEEeCCCc
Confidence 445556777766544444443322 23344 89999999999653210 011111112333332 457888899888
Q ss_pred eeccCcccc
Q 014821 408 HIYIDTLTY 416 (418)
Q Consensus 408 ~~~~~~~~~ 416 (418)
.+++||||.
T Consensus 180 ~T~v~gi~A 188 (221)
T d1dxla1 180 STNVSGVYA 188 (221)
T ss_dssp BCSSTTEEE
T ss_pred ccCCCCEEE
Confidence 999999995
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.82 E-value=1.4e-05 Score=68.55 Aligned_cols=83 Identities=6% Similarity=-0.042 Sum_probs=49.8
Q ss_pred hhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcc-hhccccchhhhhhhcCCCCCCccceeeeeec
Q 014821 332 DKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVK-LKNIFLSQTFQDYLAGSPTEKLPLYRSAHIY 410 (418)
Q Consensus 332 ~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
.......++++.+.....+.. ....++.+ +.+|.||+|||.+|... .........+....+...++.+.++..+.++
T Consensus 104 ~~~~~~~v~~i~G~~~~~~~~-~~~~~~~~-i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~~~~T~ 181 (220)
T d1lvla1 104 ALLKKHGVKVVHGWAKVLDGK-QVEVDGQR-IQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTS 181 (220)
T ss_dssp HHHHHTTCEEECSCEEEEETT-EEEETTEE-EECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCTTCBCS
T ss_pred hhhccCceEEEEeeecccCcc-ccccccee-EeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccchhhcC
Confidence 345556677777654333333 33345566 99999999999887531 1111111112222232346778888888899
Q ss_pred cCcccc
Q 014821 411 IDTLTY 416 (418)
Q Consensus 411 ~~~~~~ 416 (418)
+||||.
T Consensus 182 ~~~I~A 187 (220)
T d1lvla1 182 MHNVWA 187 (220)
T ss_dssp STTEEE
T ss_pred CCCEEE
Confidence 999985
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.78 E-value=0.00012 Score=57.11 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|-+++..|..|++...+|+++-|++.+. ......
T Consensus 34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r-----------------------------------a~~~~~-- 76 (130)
T d1vdca2 34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-----------------------------------ASKIMQ-- 76 (130)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SCHHHH--
T ss_pred CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc-----------------------------------cchhhh--
Confidence 5899999999999999999999989999999875321 011222
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
++..+.-++ .+.+++++.++..+. . .+..-.+.+++..+++..++.+|.|.+|.
T Consensus 77 -~~l~~~~nI--~v~~~~~v~~i~Gd~--~-----------------~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 77 -QRALSNPKI--DVIWNSSVVEAYGDG--E-----------------RDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp -HHHHTCTTE--EEECSEEEEEEEESS--S-----------------SSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred -hccccCCce--EEEeccEEEEEEccC--C-----------------cccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 222233345 788999999999865 0 01123467777777888999999999873
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=1.8e-05 Score=69.81 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=27.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++|||+|..|+.+|..++..|.. |.++.+.
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~---V~liE~~ 33 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAK---VALVEKS 33 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHHCCCe---EEEEecC
Confidence 489999999999999999998865 9999864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=7.4e-06 Score=68.02 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=33.8
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...+|+|+|||+|.+|+++|..|..+|.. |+++.+.+.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~---Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccc---eEEEeccCc
Confidence 35689999999999999999999999876 999998764
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.75 E-value=7.6e-06 Score=71.38 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~ 37 (418)
++|||+||||||||+++|.++++.|. ++.|+|+...
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~ 38 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH 38 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 67999999999999999999999875 6889998653
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=3.1e-05 Score=66.27 Aligned_cols=86 Identities=5% Similarity=-0.016 Sum_probs=53.1
Q ss_pred hhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcch--hccccchhhhhhhcC-CCCCCccceeee
Q 014821 331 YDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKL--KNIFLSQTFQDYLAG-SPTEKLPLYRSA 407 (418)
Q Consensus 331 ~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~--~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 407 (418)
...++..+|+++.+.-.....+.+....+...+.+|.++.+||..|.... .+....-.|++..+. +..+.+.++..+
T Consensus 98 ~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~ 177 (221)
T d3grsa1 98 QNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQ 177 (221)
T ss_dssp HHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBCTTSCBCCCTTC
T ss_pred hhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCcEECCCccEEeCCCc
Confidence 34566777888877644444444443333333899999999997765321 111111123333332 457789999999
Q ss_pred eeccCcccc
Q 014821 408 HIYIDTLTY 416 (418)
Q Consensus 408 ~~~~~~~~~ 416 (418)
.+++||||.
T Consensus 178 ~T~~~gvyA 186 (221)
T d3grsa1 178 NTNVKGIYA 186 (221)
T ss_dssp BCSSTTEEE
T ss_pred cccCCcEEE
Confidence 999999995
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.62 E-value=4.6e-05 Score=65.12 Aligned_cols=85 Identities=7% Similarity=0.031 Sum_probs=48.3
Q ss_pred hhhccCcEEEeccCceeEecCc--EEEcCCceeeeccEEEEccCCCCCcch--hccccchhhhhhhcC-CCCCCccceee
Q 014821 332 DKVEEGSIILKKSQDFSFCEDG--IVVDGQTTPLKTDLVILATGFKGDVKL--KNIFLSQTFQDYLAG-SPTEKLPLYRS 406 (418)
Q Consensus 332 ~~~~~~~v~~~~~~v~~~~~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~--~~~l~~~~~~~~~~~-~~~~~~~~~~~ 406 (418)
...+..+++++.+.-....... +...++...+.+|.+|+|+|..+.... .+....-.+++..+. +..+.+.++..
T Consensus 99 ~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~ 178 (223)
T d1ebda1 99 GLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQ 178 (223)
T ss_dssp HHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTSCBCCCTT
T ss_pred HhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCCCEeECCC
Confidence 3455667777776533333333 333444444899999999754333111 000111112333332 45778999988
Q ss_pred eeeccCcccc
Q 014821 407 AHIYIDTLTY 416 (418)
Q Consensus 407 ~~~~~~~~~~ 416 (418)
+.+++||||.
T Consensus 179 ~~T~~~gvyA 188 (223)
T d1ebda1 179 CRTSVPNIFA 188 (223)
T ss_dssp CBCSSTTEEE
T ss_pred CCCCCCCEEE
Confidence 8999999995
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=4.1e-05 Score=66.30 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=49.6
Q ss_pred hhhccCcEEEeccCceeEec------Cc--EEEcCCce-eeeccEEEEccCCCCCcchhc---cccchhhhhhhcC-CCC
Q 014821 332 DKVEEGSIILKKSQDFSFCE------DG--IVVDGQTT-PLKTDLVILATGFKGDVKLKN---IFLSQTFQDYLAG-SPT 398 (418)
Q Consensus 332 ~~~~~~~v~~~~~~v~~~~~------~~--v~~~~g~~-~~~~D~Vi~atG~~~~~~~~~---~l~~~~~~~~~~~-~~~ 398 (418)
..++..+|+++.+.-..+.. .. +...+|++ .+++|.||+|||.++...... ....-.+....+. +..
T Consensus 102 ~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~ 181 (233)
T d1xdia1 102 AQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRG 181 (233)
T ss_dssp HHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTT
T ss_pred hhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCC
Confidence 45566677777664211111 12 33456542 389999999999987632111 1111112233332 335
Q ss_pred CCccceeeeeeccCcccc
Q 014821 399 EKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ 416 (418)
+.+.++..+.+++||||.
T Consensus 182 G~I~vd~~~~T~~~gIyA 199 (233)
T d1xdia1 182 NYLTVDRVSRTLATGIYA 199 (233)
T ss_dssp TBCCCCSSSBCSSTTEEE
T ss_pred CcCCcCCCcccCCCCEEE
Confidence 678999888999999995
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=6.5e-05 Score=64.28 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=33.7
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhh-------------------hcCCCCCeEEEEecCccccc
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTT-------------------ANGLENPCTVLYRTEHWNIP 244 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~-------------------~~~~~~~V~~~~r~~~~~~~ 244 (418)
...+++|+|||+|.+|+|+|..|+. +.+. ++|+++.|++..-.+
T Consensus 36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~-~~V~iv~RRg~~~~~ 98 (216)
T d1lqta1 36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGI-QEVVIVGRRGPLQAA 98 (216)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCC-CEEEEECSSCGGGCC
T ss_pred cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCC-ceEEEEEECChHhCC
Confidence 3458999999999999999988762 1222 579999999865444
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.58 E-value=9.9e-05 Score=67.45 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
-|+|+|||||.+|+-+|..|++.+.. .+|+++.|+..
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~-~~v~vfEk~~~ 40 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAF-DQVTLFERRGS 40 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCC-SEEEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCC-CCEEEEECCCC
Confidence 47999999999999999999876642 35999999853
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.55 E-value=0.00025 Score=60.66 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|..|+++|..+++.+.. +-++..+.
T Consensus 3 YDVIVIGgG~AG~eAA~~aAR~G~k---tllit~~~ 35 (230)
T d2cula1 3 YQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSL 35 (230)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCG
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCc---EEEEEecc
Confidence 4699999999999999999998875 88887653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.51 E-value=0.00012 Score=62.99 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=53.3
Q ss_pred hhhhccCcEEEeccCceeEecCcEEE--cCCc-eeeeccEEEEccCCCCCcchhccccch--hhhhhhcCCC--CCCccc
Q 014821 331 YDKVEEGSIILKKSQDFSFCEDGIVV--DGQT-TPLKTDLVILATGFKGDVKLKNIFLSQ--TFQDYLAGSP--TEKLPL 403 (418)
Q Consensus 331 ~~~~~~~~v~~~~~~v~~~~~~~v~~--~~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~--~~~~~~~~~~--~~~~~~ 403 (418)
...+++.+|+++.+.........+.. .++. ..+.++.++++||.+|...-....... .+....+... .+.+.+
T Consensus 108 ~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~v 187 (235)
T d1h6va1 108 RVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPV 187 (235)
T ss_dssp HHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCCBCC
T ss_pred hhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeeccccCcccc
Confidence 34556677888887655555554333 3333 237999999999988764322211111 1222223222 477999
Q ss_pred eeeeeeccCcccc
Q 014821 404 YRSAHIYIDTLTY 416 (418)
Q Consensus 404 ~~~~~~~~~~~~~ 416 (418)
+..+.+++||||.
T Consensus 188 d~~~~TsvpgIyA 200 (235)
T d1h6va1 188 TDEEQTNVPYIYA 200 (235)
T ss_dssp CTTSBCSSTTEEE
T ss_pred CCccccCCCCEEE
Confidence 9999999999994
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.0001 Score=60.85 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=27.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|+|||||++|+++|..+.+.|.. |.++.++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~---v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIR---TGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCC---EEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCe---EEEEEEe
Confidence 589999999999999999888865 9999864
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.48 E-value=3.8e-05 Score=71.25 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.||+||||+|++|+.+|.+|++.|.+|+|+|+..
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 36899999999999999999999999999999974
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=97.38 E-value=0.00021 Score=62.45 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|.+.|.. |.++.+.+.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~---V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKK 38 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 4699999999999999999998865 999998763
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00014 Score=61.90 Aligned_cols=83 Identities=8% Similarity=0.004 Sum_probs=46.8
Q ss_pred hhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc-CCCCCCccceeeeeec
Q 014821 332 DKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA-GSPTEKLPLYRSAHIY 410 (418)
Q Consensus 332 ~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 410 (418)
..+++.+|++..+.-....... ...++.. +.++.+++|||..|...-.+....-.+....+ .+..+.+.++....++
T Consensus 99 ~~l~~~gV~v~~~~~~~~~~~~-~~~~~~~-~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~ 176 (217)
T d1gesa1 99 NVLGKNNVDVIKGFARFVDAKT-LEVNGET-ITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTN 176 (217)
T ss_dssp HHHHHTTCEEEESCCEEEETTE-EEETTEE-EEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred HHHhCCeEEEEeeecccceeee-ecCCCce-eeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCchhccC
Confidence 4556667777766543333333 3356677 99999999999876643333222112222222 2345556665555556
Q ss_pred cCcccc
Q 014821 411 IDTLTY 416 (418)
Q Consensus 411 ~~~~~~ 416 (418)
.|+||.
T Consensus 177 ~~~i~~ 182 (217)
T d1gesa1 177 IEGIYA 182 (217)
T ss_dssp STTEEE
T ss_pred CCcEEE
Confidence 667763
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=97.30 E-value=0.00013 Score=62.20 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=49.0
Q ss_pred hhhccCcEEEeccCceeEecCcEEE--cC-CceeeeccEEEEccCCCCCcchhccccch-hhhhhhcC-CCCCCccceee
Q 014821 332 DKVEEGSIILKKSQDFSFCEDGIVV--DG-QTTPLKTDLVILATGFKGDVKLKNIFLSQ-TFQDYLAG-SPTEKLPLYRS 406 (418)
Q Consensus 332 ~~~~~~~v~~~~~~v~~~~~~~v~~--~~-g~~~~~~D~Vi~atG~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~ 406 (418)
..++..+|+++.+............ .+ +...+.++.++.|||.++...-....... ++.+..+. +..+.+.++..
T Consensus 107 ~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~ 186 (229)
T d3lada1 107 SLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDY 186 (229)
T ss_dssp HHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTT
T ss_pred HHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCCCcEEeccc
Confidence 3455666777776543333333222 22 33337899999999987653211111111 22222222 34677888888
Q ss_pred eeeccCcccc
Q 014821 407 AHIYIDTLTY 416 (418)
Q Consensus 407 ~~~~~~~~~~ 416 (418)
+.+++||||.
T Consensus 187 ~~T~vpgiyA 196 (229)
T d3lada1 187 CATSVPGVYA 196 (229)
T ss_dssp SBCSSTTEEE
T ss_pred ccCCCCCEEE
Confidence 8999999985
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.25 E-value=9.2e-05 Score=69.37 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
.+|+||||||++|+.+|.+|++.+ .+|+|||+..
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 489999999999999999999987 6999999975
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.24 E-value=2.7e-05 Score=67.39 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=27.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
++|+|||||++||++|.+|+++|.+++++|+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~ 32 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV 32 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence 36999999999999999999999877666653
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.00011 Score=63.27 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=33.8
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhhhc------------------CCCCCeEEEEecCccc
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTTAN------------------GLENPCTVLYRTEHWN 242 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~~~------------------~~~~~V~~~~r~~~~~ 242 (418)
+..+++|+|||+|.+|+|+|..|.... ...++|+++.|++..-
T Consensus 36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~ 96 (225)
T d1cjca1 36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ 96 (225)
T ss_dssp CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG
T ss_pred cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh
Confidence 346899999999999999999998731 1125799999998533
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.19 E-value=0.00011 Score=68.72 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
.+|+||||||.+|+.+|.+|++.+ ++|+|||+..
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 489999999999999999999875 7999999975
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0003 Score=51.29 Aligned_cols=35 Identities=31% Similarity=0.718 Sum_probs=32.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.++|+|||.|-+|+++|..|.++|.+++++|.+.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 35789999999999999999999999999999865
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.11 E-value=0.0001 Score=68.04 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=29.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+||||+|++|+.+|.+|++. .+|+|||+.+
T Consensus 27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred ccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 7999999999999999999986 8999999974
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.96 E-value=0.00045 Score=60.14 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..++|+|||+|.+|+-+|..|++.|.. |+++.|++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~---v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 467999999999999999999998865 999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.96 E-value=0.001 Score=58.30 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=29.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||+|.+|+-+|..|+++|.. |+++.+..
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~---V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKN---TALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCC
Confidence 599999999999999999998865 99999864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.94 E-value=3.2e-05 Score=67.03 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=33.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...++|+|||+|.+|+.+|..|+..|.. |+++.++..
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~---v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccc---eeeEeeccc
Confidence 5689999999999999999999998876 999988764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.74 E-value=0.00047 Score=56.34 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=32.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||||..|..+|.+|.++|++|+|+|++.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 4789999999999999999999999999999975
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.65 E-value=0.00074 Score=55.49 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=31.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||+|..|+++|..|+++|++|.++++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 689999999999999999999999999999964
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=96.63 E-value=0.0038 Score=53.40 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=36.1
Q ss_pred eeccEEEEccCCCCCcchhcc--ccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 363 LKTDLVILATGFKGDVKLKNI--FLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 363 ~~~D~Vi~atG~~~~~~~~~~--l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.+|.|+++||.++...-... .....|.+..+. +..|.+.++.++.+++||+|.
T Consensus 150 i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA 206 (240)
T d1feca1 150 LDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYA 206 (240)
T ss_dssp EEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred EecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEE
Confidence 899999999998876432111 111113333332 456889999988999999994
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.62 E-value=0.00051 Score=56.98 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|+|||+|.+|+++|..|...|.. .|+++.|++.
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~--~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYS--DITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCC--eEEEEEecCc
Confidence 478999999999999999999998862 3999999874
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.62 E-value=0.0035 Score=46.54 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+-+|..|++...+++++.+++
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 4799999999999999999999888888777754
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=96.51 E-value=0.0024 Score=56.81 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=28.8
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|.+|+-+|..|+++|.. .|+++.|+.
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~--~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWN--NITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCC--CEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC--cEEEEeCCC
Confidence 699999999999999999988742 499999874
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0012 Score=54.82 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=33.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|.-|...|..++..|++|+++|+++
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 677899999999999999999999999999999964
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.0031 Score=53.47 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|..|+.+|..++..|.. |.++.+++
T Consensus 5 ~yDviVIG~GpAGl~aA~~aa~~G~k---V~lie~~~ 38 (233)
T d1v59a1 5 SHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRG 38 (233)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecC
Confidence 34699999999999999999998865 99998765
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=96.34 E-value=0.0039 Score=52.96 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
-.|+|||+|+.|+.+|..+...|.. |.++.+.+
T Consensus 7 yDviIIG~GPaGlsaA~~aa~~G~~---V~viE~~~ 39 (229)
T d1ojta1 7 YDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYK 39 (229)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 4699999999999999999998865 99998765
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.002 Score=51.76 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||+|.-|...|..|++.|++|+++++..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~ 33 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence 469999999999999999999999999999975
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=96.23 E-value=0.01 Score=53.08 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|++.|.. |.++.+.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~---V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCC---EEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCC
Confidence 3599999999999999999998865 99999865
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=96.21 E-value=0.003 Score=56.26 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
-.|+|||+|.+|+-+|..|++.|.. |.++.+.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~---V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAK---VILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 3699999999999999999998865 99999865
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0057 Score=54.71 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|..|+-+|..+.+.+.. .+|.++.+..
T Consensus 6 ~DVlVIG~G~AGl~AA~~a~~~~~g-~~V~lleK~~ 40 (311)
T d1kf6a2 6 ADLAIVGAGGAGLRAAIAAAQANPN-AKIALISKVY 40 (311)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTT-CCEEEEESSC
T ss_pred cCEEEECccHHHHHHHHHHHHhCCC-CEEEEEECCC
Confidence 4699999999999999999887543 4599998754
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=96.15 E-value=0.0096 Score=50.25 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=30.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
-|+|+|||+|.+|+-+|..|++.+.+++++-+..
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 5899999999999999999999999888887765
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.14 E-value=0.0014 Score=54.42 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.+.+|+|||+|.-|.++|..|++.|.+|.++.++.
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 556789999999999999999999999999999864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.14 E-value=0.0025 Score=49.31 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|+|+|..|..+|..|.+.|++++++|+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 469999999999999999999999999999975
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=96.14 E-value=0.0054 Score=53.63 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|+++|.. |+++.+..
T Consensus 4 yDvvIIGaGi~Gls~A~~La~~G~~---V~viE~~~ 36 (281)
T d2gf3a1 4 FDVIVVGAGSMGMAAGYQLAKQGVK---TLLVDAFD 36 (281)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCC
Confidence 4699999999999999999998865 99999864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.13 E-value=0.0026 Score=49.31 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=31.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+++|||+|..|..+|..|.+.|++++++|.+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 579999999999999999999999999999975
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.95 E-value=0.0043 Score=46.55 Aligned_cols=36 Identities=22% Similarity=0.019 Sum_probs=31.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.++++|+|||+|.+|..-|..|.+.+.. |+++....
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga~---v~v~~~~~ 45 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF 45 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 4689999999999999999999999876 88877533
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.93 E-value=0.0025 Score=53.34 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||.|+.|+.+|..|++.|++|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 359999999999999999999999999999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0032 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||..|+.-|..|.+.|.+|+|+.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4589999999999999999999999999999874
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.76 E-value=0.0037 Score=51.51 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=31.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|..|...|..++.+|++|+++|++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4789999999999999999999999999999964
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.66 E-value=0.029 Score=47.22 Aligned_cols=82 Identities=9% Similarity=-0.008 Sum_probs=48.4
Q ss_pred ccCcEEEeccCceeEecCcEEEcC-------CceeeeccEEEEccCCCCCcchhccccchhh--hhhhcCCCCCCcccee
Q 014821 335 EEGSIILKKSQDFSFCEDGIVVDG-------QTTPLKTDLVILATGFKGDVKLKNIFLSQTF--QDYLAGSPTEKLPLYR 405 (418)
Q Consensus 335 ~~~~v~~~~~~v~~~~~~~v~~~~-------g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 405 (418)
...+++++.+.-.......+...+ ....+++|.|++++|.++............+ ....+...++++.++.
T Consensus 115 ~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde 194 (238)
T d1aoga1 115 DTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDE 194 (238)
T ss_dssp HSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCT
T ss_pred cccccEEEEEEeeccccccccccccccccccccccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecC
Confidence 355677777643333333322211 1122789999999988876443322222222 2233434588899999
Q ss_pred eeeeccCcccc
Q 014821 406 SAHIYIDTLTY 416 (418)
Q Consensus 406 ~~~~~~~~~~~ 416 (418)
.+.+++|++|.
T Consensus 195 ~~~T~~~~iyA 205 (238)
T d1aoga1 195 YSRTNVSNIYA 205 (238)
T ss_dssp TCBCSSTTEEE
T ss_pred CeeeccCCEEE
Confidence 99999999985
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.62 E-value=0.0055 Score=49.06 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.-+|+|||+|.+|+.++..+...|.+|.++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 4689999999999999999999999999999964
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.47 E-value=0.0084 Score=44.83 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.++|+|||+|..|..-|..|.+.|.+++++++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 45799999999999999999999999999998754
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.44 E-value=0.035 Score=46.85 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=29.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--------------------CC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--------------------GF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--------------------~~-~v~iie~~~ 36 (418)
-++|+|||+|-.+|=+|+.|.+. +. +|.++.++.
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 37899999999999999999883 54 799999976
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.43 E-value=0.007 Score=49.14 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
-+|+|||+|.+|+.++..+...|.+|.++|.+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999999999999999875
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.37 E-value=0.0067 Score=47.75 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++++|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 35799999999999999999999885 899999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.29 E-value=0.0041 Score=54.61 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|+|||+|.+|+-+|..|++.|.. |+++.+++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~---V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCC---EEEEeCCC
Confidence 58999999999999999999998865 99998765
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=95.17 E-value=0.036 Score=49.23 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..+++.|.. |.++.+.+
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~---V~vlEK~~ 52 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAP 52 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCC
Confidence 3599999999999999999999875 99999865
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.01 Score=49.37 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=33.5
Q ss_pred CCCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|.+++|+|+|| |..|-.++..|.++|++|+++.|+.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 88999999995 9999999999999999999999864
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.06 E-value=0.012 Score=46.46 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=31.7
Q ss_pred CccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++|+||| .|.-|..+|.+|.++|+++.++|++.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 57999999 69999999999999999999999964
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.05 E-value=0.0098 Score=47.63 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||.|.-|.+.|..|.++|++|+++|++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 359999999999999999999999999999864
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.96 E-value=0.02 Score=49.98 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=30.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|.-+|..|...|.. |+++.|++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~---v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 3799999999999999999999876 999998763
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.83 E-value=0.013 Score=46.41 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=30.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++++|+|||+|..|.++|..|...++ +++++|.+.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 36799999999999999998888886 899999864
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.82 E-value=0.0063 Score=54.17 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=32.6
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...+|+|+|||+|.+|+-+|..|++.|.. |+++.+++
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~---V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASE 63 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCC
Confidence 45678999999999999999999999865 99998765
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.81 E-value=0.011 Score=48.33 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=29.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
++|+|||+|.-|.++|..|++.|.+|.++.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 47999999999999999999999999999774
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.81 E-value=0.014 Score=46.46 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=31.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
|.+.+|+|||+|..|.++|..|...++ +++++|.+.
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 456789999999999999999999886 799999863
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.01 Score=42.59 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=32.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.++|+|+|+|.|.||.-+|..|.+.|.. |+++..+.
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~---v~~~D~~~ 38 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRM 38 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCC---CEEEESSS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCE---EEEeeCCc
Confidence 6789999999999999999999999876 99888654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.74 E-value=0.0089 Score=51.12 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..++|+|||+|.+|+-+|..|+++|.. |+++.|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~---V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYS---VHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCC---EEEEeCCC
Confidence 457899999999999999999999875 99999864
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.70 E-value=0.017 Score=54.41 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.+||+|+|.|..=..+|.+|++.|++|+=+|+++.-||.|..
T Consensus 5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS 47 (491)
T d1vg0a1 5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 47 (491)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence 3589999999999999999999999999999999999999887
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.61 E-value=0.015 Score=45.35 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
+++|+|||+|.-|.++|..|+.+++ +++++|.+.
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~ 35 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 35 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence 4689999999999999999998876 899999854
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.54 E-value=0.014 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=29.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++|+|||+|..|.++|..|..++. +++++|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 689999999999999999999875 799999853
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.51 E-value=0.01 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+.|+|+|||||.+|+-+|..|++.|.. |+++.+++
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~---V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCC---EEEEECCC
Confidence 368999999999999999999987754 99999875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.025 Score=42.29 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=32.3
Q ss_pred CCccEEEEcCC-----------HHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAG-----------VSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G-----------~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+++|+|||+| +++..+++.|++.|++++++..++
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 46789999999 699999999999999999999987
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0096 Score=46.96 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||||..|.+-|..|.+.|.. |+++++.
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA~---VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 5689999999999999999999999876 9999864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.45 E-value=0.021 Score=45.43 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=31.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+.+|+|||+|..|.++|..|...++ +++++|.+.
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 5799999999999999999999987 899999863
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.44 E-value=0.02 Score=44.66 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=29.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+.+|+|||+|..|.++|..|..++. +++++|.+.
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 4589999999999999999999886 799999864
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.22 E-value=0.016 Score=47.83 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=28.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||.|+.|+.+|..|+ +|++|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP 32 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence 36999999999999998886 599999999865
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.03 E-value=0.021 Score=45.58 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=30.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||-|.-|...|.+|.++|++|.++|++.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 569999999999999999999999999999964
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.01 E-value=0.025 Score=44.41 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=30.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
..+|+|||+|..|.++|..|...++ +++++|.+.
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 3679999999999999999999876 799999854
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.98 E-value=0.027 Score=43.80 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 369999999999999999999875 899999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.97 E-value=0.029 Score=45.33 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+|.|||-|.-|..+|.+|+++|++|.++|++.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4689999999999999999999999999999965
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.025 Score=38.87 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=31.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.|.|||+|.-|..++....+.|+++.++++.+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 789999999999999999999999999999865
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.015 Score=51.68 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=31.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+.++|+|||+|.+|+-+|..|.+.|.. |+++.+++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~---V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCC
Confidence 3467899999999999999999998865 99998764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.87 E-value=0.027 Score=45.12 Aligned_cols=35 Identities=23% Similarity=0.026 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|+|||+|..|.-+|..|.+.|.. |+++.|+..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~---V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIK---VTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCE---EEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECChH
Confidence 68999999999999999999998765 999999753
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.64 E-value=0.028 Score=43.77 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=29.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++|+|||+|..|.++|..|+.++. +++++|.+.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 479999999999999999998876 799999754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.63 E-value=0.014 Score=49.34 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCC----CCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGL----ENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~----~~~V~~~~r~~ 239 (418)
+.+|+|||+|.+|+.+|..|..+|.. ..+|+++.+.+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 46999999999999999999998731 12499999876
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.56 E-value=0.031 Score=45.36 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.5
Q ss_pred cEEEE-cCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIV-GAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvII-G~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|| |+|.-|.++|..|++.|++|++.+|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999 679999999999999999999999964
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.46 E-value=0.029 Score=44.63 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|.|||.|.-|..+|.+|+++|++|.++|++.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 59999999999999999999999999999964
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.32 E-value=0.022 Score=47.95 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+.+|..|+..+.. .+|+++.+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~-~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSR-AHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSS-CEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCC-CeEEEEeCCCC
Confidence 3899999999999999999876432 35999988763
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.27 E-value=0.042 Score=42.74 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=29.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
.+|+|||+|..|.++|..|..+++ +++++|.+.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 479999999999999999999887 799999853
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.25 E-value=0.02 Score=48.67 Aligned_cols=33 Identities=30% Similarity=0.267 Sum_probs=28.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|.+|+-+|..|.+.|.. .|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~--~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGIT--DLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCC--CEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCC--cEEEEECCC
Confidence 699999999999999999998841 399998865
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.23 E-value=0.019 Score=49.89 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=29.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|.+|+-+|..|++.|.. |+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~---V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTD---AVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCC---EEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCC---EEEEecCC
Confidence 599999999999999999998875 99998864
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.04 E-value=0.052 Score=42.52 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=29.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
+.+|+|||+|..|.++|..|...++ +++++|.+.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 4689999999999999988888776 799999864
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.02 E-value=0.045 Score=42.64 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=28.6
Q ss_pred cEEEEcC-CHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 5 QIAIVGA-GVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~-G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
+|+|||| |..|.++|..|..++. +++++|.+.
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 5999996 9999999999999885 899999853
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.041 Score=42.64 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++|+|||+|..|.++|..|..++. +++++|.+.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 369999999999999999998775 799999753
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.049 Score=43.62 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|-++-+++..|.+.|.++.|+.|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 4789999999999999999999999999999963
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.94 E-value=0.049 Score=43.89 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=30.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|-|||.|.-|..+|.+|+++|++|.++|++.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 469999999999999999999999999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.90 E-value=0.049 Score=43.48 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~ 36 (418)
++|.|||.|.-|.+.|+.|.+.|+ +|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 479999999999999999999886 577788864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.066 Score=39.57 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=31.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+|.|||||.-|..++..+.+.|+++.++|+++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999875
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.36 Score=41.98 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..+.+.+ +|.++...+
T Consensus 8 ~DVvVVG~G~AGl~AA~~a~~~g----~V~llEK~~ 39 (305)
T d1chua2 8 CDVLIIGSGAAGLSLALRLADQH----QVIVLSKGP 39 (305)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTS----CEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHhhcCC----CEEEEECCC
Confidence 46999999999999988876644 399998765
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.058 Score=40.69 Aligned_cols=34 Identities=41% Similarity=0.588 Sum_probs=31.6
Q ss_pred CccEEEEcCCH-----------HHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGV-----------SGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~-----------aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|+ ++..++..|++.|++++++..++
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP 51 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP 51 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence 58999999985 89999999999999999999987
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.53 E-value=0.051 Score=42.60 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=29.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||.|..|..+|..|+++|++++++++..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 369999999999999999999999999988753
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.17 Score=44.90 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
-.|+|||+|..|+-+|.++.+.|.. |.++.+.+.
T Consensus 8 ~DVlVVG~G~AGl~AAl~aa~~G~~---V~lleK~~~ 41 (330)
T d1neka2 8 FDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP 41 (330)
T ss_dssp ESCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCG
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCe---EEEEeCCCC
Confidence 3599999999999999999998865 999998653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.11 E-value=0.034 Score=44.88 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|+|||+|..|.-+|..|...|.+ |+++.|++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~---V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 37999999999999999999998876 99999865
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.10 E-value=0.067 Score=42.68 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=30.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
.++|+|||+|-++-+++..|.+.|. ++.|+.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4689999999999999999999997 799998863
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.07 E-value=0.061 Score=41.83 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.9
Q ss_pred cEEEEcC-CHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 5 QIAIVGA-GVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 5 ~vvIIG~-G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
+|+|||| |..|.++|..|...++ +++++|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 6999996 9999999999998886 79999985
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.11 Score=40.52 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=30.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+-.|+|+|.|..|..++..|.+.|.+++++|..+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3459999999999999999999999999999864
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.57 E-value=0.049 Score=45.55 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
-.|+|||+|.+|+-+|..|++.|.. |+++.+++
T Consensus 6 yDviViGaG~~Gl~~A~~La~~G~~---V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLGTGITECILSGLLSVDGKK---VLHIDKQD 38 (297)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCC
Confidence 4599999999999999999998865 99999975
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.53 E-value=0.054 Score=47.68 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||||.+|+-+|..|++.|.. |+++.+++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~---V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKK---VLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCC---EEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCc---EEEEECCC
Confidence 689999999999999999988755 99998864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.39 E-value=0.095 Score=41.40 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=30.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
+.++|+|||+|-.|-.++.+|..+|. +++|+.|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 46789999999999999999999998 58888885
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.27 E-value=0.09 Score=45.39 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=32.7
Q ss_pred CCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+++|+|+|| |..|-.++..|.+.|.+|++++|+..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 4789999997 99999999999999999999998653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.14 E-value=0.1 Score=41.44 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|.+++++|+++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 468999999999999998888999999999865
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.97 E-value=0.095 Score=45.56 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
++.+|+|+|| |..|..++..|.++|++|+++.|+..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 4678999996 99999999999999999999998653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.1 Score=41.42 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=29.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..|+|+|+|..|+.++..+...|.++++++.++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 479999999999999988888899999999864
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.062 Score=42.43 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=30.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|..|.-+|..|++.|.+ |+++.|+..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~---V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHE---VQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCc---eEEEEcCHH
Confidence 699999999999999999998876 999999764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.55 E-value=0.058 Score=44.21 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
++|+|||+|..|..+|..++..|.. |+++.+++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCc---EEEEECCh
Confidence 7999999999999999999998876 99998876
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.16 Score=41.00 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
.++|+|||+|-+|-+++..|.++|. +++|++|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 4789999999999999999999987 688999864
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.13 Score=40.94 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=29.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 479999999999999999999998 689999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.43 E-value=0.13 Score=40.61 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|.+++++++++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 479999999999999998888999999999864
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=90.32 E-value=0.097 Score=41.21 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
-+.++|+|-|.+|-.+|.+|+..|.+|++.|..+
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 4789999999999999999999999999999964
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.23 E-value=0.11 Score=41.59 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=30.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+.|+|+|+|-++-+++..|.+.+.+++|+.|+.
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 4689999999999999999998888999999963
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.05 E-value=0.13 Score=40.15 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=29.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
++|.+||+|.-|-+.+..|.+.+ .++.+++++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 36999999999999999998877 7899999864
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.13 Score=40.62 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
-+.++|||-|..|-.+|..|+..|.+|++.|..+
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 3789999999999999999999999999999953
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.084 Score=46.72 Aligned_cols=31 Identities=26% Similarity=0.118 Sum_probs=28.3
Q ss_pred EEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 206 VTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 206 v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
|+|||+|.+|+-+|..|++.|.. |+++.+++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~---V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLN---VVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCC---EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCC---EEEEecCC
Confidence 89999999999999999999865 99998765
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.78 E-value=0.14 Score=40.06 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=29.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+|--|.+++..|.+.+.++++.+++.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 369999999999999999999999999998853
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.63 E-value=0.059 Score=43.86 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
=++|+|||+|..|..+|..++..|.. |+++.+++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTP---ILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCC---EEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe---EEEEECCHH
Confidence 46899999999999999999998876 999998763
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.28 E-value=0.1 Score=44.59 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
-+|+|||+|.+|+-+|..|.+.|.+ .|+++.|++.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~--~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIG--KVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--eEEEEeCCCC
Confidence 4799999999999999999988742 4899998764
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=89.21 E-value=0.18 Score=38.86 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.7
Q ss_pred cEEEEc-CCHHHHHHHHHHHhCCC--ceEEEeeC
Q 014821 5 QIAIVG-AGVSGLLACKYLLLKGF--HPIVFEAR 35 (418)
Q Consensus 5 ~vvIIG-~G~aGl~~a~~L~~~~~--~v~iie~~ 35 (418)
+|+||| +|..|.++|..|..++. +++++|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence 699999 69999999999999886 79999963
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.79 E-value=0.15 Score=40.98 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=29.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CEEEEECCCccchhheeccccccccccccccccc
Confidence 578999999999999999998997 789999864
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.21 E-value=0.22 Score=39.30 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=29.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..|+|+|+|..|+.++..+...|.++++++.+.
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 469999999999999988888999998998853
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.90 E-value=0.2 Score=42.48 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=30.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
..+|+|||+|--|..+|..|++.|. +++|+|..
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 3689999999999999999999998 79999974
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.74 E-value=0.21 Score=39.91 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.++|+|||+|-++-+++..|.+.+ ++.|+.|+.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 3578999999999999999997766 899999853
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.47 E-value=0.3 Score=43.36 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+++.|+|+|| |..|-.++..|.++|++|+++-|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 5789999995 9999999999999999999998854
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.38 E-value=0.11 Score=39.20 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHh-CCCc-eEEEeeCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLL-KGFH-PIVFEARSDI 38 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~-~~~~-v~iie~~~~~ 38 (418)
++.+|+|+|||.+|.+++.++.. .+++ +.+||.++..
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 35789999999999999987754 3555 5567776644
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.32 E-value=0.18 Score=43.48 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=30.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhh-cCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTA-NGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~-~~~~~~V~~~~r~~~ 240 (418)
.....|+|||+|.+|+.+|..|+++ |.. |+++.+++.
T Consensus 31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~---V~vlE~~~~ 68 (278)
T d1rp0a1 31 YAETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVS 68 (278)
T ss_dssp HTEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSS
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHccCCe---EEEEecCCC
Confidence 3456799999999999999999764 654 999998763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=87.30 E-value=0.33 Score=39.20 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=31.6
Q ss_pred CCccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+.|+|.| +|-.|..+|+.|+++|.+|++++++.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 458899999 68999999999999999999999964
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=0.29 Score=37.74 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.8
Q ss_pred ccEEEEc-CCHHHHHHHHHHHh-CC--CceEEEeeC
Q 014821 4 KQIAIVG-AGVSGLLACKYLLL-KG--FHPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG-~G~aGl~~a~~L~~-~~--~~v~iie~~ 35 (418)
++|+||| +|..|.++|..|.. .+ .+++++|..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 4799999 59999999988764 34 489999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.49 E-value=0.33 Score=38.61 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=28.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 479999999999999999998887 688898864
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.45 E-value=0.36 Score=38.11 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=31.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.++++|+|+|+|-+|--++..|...+. ++|+++.|+.
T Consensus 15 ~~~~~vlIlGaGGaarai~~aL~~~g~--~~I~I~nR~~ 51 (167)
T d1npya1 15 NKNAKVIVHGSGGMAKAVVAAFKNSGF--EKLKIYARNV 51 (167)
T ss_dssp CTTSCEEEECSSTTHHHHHHHHHHTTC--CCEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC--CEEEEecccH
Confidence 367899999999999999999998875 3599998875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.37 E-value=0.3 Score=38.96 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
-|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 59999999999999999999985 799999864
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.15 E-value=0.39 Score=39.63 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=28.8
Q ss_pred CccEEEEcCCHHHHHHHHHHH--------------------hCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLL--------------------LKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~--------------------~~~~-~v~iie~~~ 36 (418)
.++|+|||+|-.++=+|+.|+ +.+. +|.++.|+.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 478999999999999999887 4565 699999875
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.01 E-value=0.58 Score=35.91 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=33.3
Q ss_pred CccEEEEcC-CHHHHHHHHHHHhCC---CceEEEeeCCCCCcccccc
Q 014821 3 KKQIAIVGA-GVSGLLACKYLLLKG---FHPIVFEARSDIGGAWIKT 45 (418)
Q Consensus 3 ~~~vvIIG~-G~aGl~~a~~L~~~~---~~v~iie~~~~~gg~~~~~ 45 (418)
+.+|+|||| |+.|..+.+.|.+++ .++..+..+...|......
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~ 48 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA 48 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeec
Confidence 578999997 999999999997643 4788887766676655443
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=85.82 E-value=0.3 Score=43.64 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=30.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.|+|||+|..|.-+|..|++.|.. |.++.+...|..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~~~~ 39 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQLWNQ 39 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCCCCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCe---EEEEecCCCCCC
Confidence 589999999999999999998754 999999765543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=85.80 E-value=0.37 Score=39.91 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=29.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
+..+|++.|+|.+|+.+|..|...+. ++.++|+.
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~ 59 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 59 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence 45789999999999999999988776 68888885
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.68 E-value=0.31 Score=38.23 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=29.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|.++++++.+.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence 478999999999999999999999999998754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=85.68 E-value=0.21 Score=37.69 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
|+++|+|.|..|..+|..|...|.. |+++..++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~---vvvid~d~~ 34 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINEE 34 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---CEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe---EEEecCcHH
Confidence 6799999999999999999998876 999988764
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.63 E-value=0.085 Score=44.12 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=22.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
+|+|||+|.+|+-+|..|+++|..
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHS 25 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCC
Confidence 699999999999999999998864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=85.26 E-value=0.29 Score=38.40 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=31.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.++++|+|||+|..|..++..|...+. ++++++.|+.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~--~~i~v~nRt~ 58 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGV--RAVLVANRTY 58 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCC--SEEEEECSSH
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCC--cEEEEEcCcH
Confidence 568999999999999999999999875 3588888764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=84.92 E-value=0.31 Score=43.60 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
-.|+|||+|..|.-+|..|++.|. +|.++.+...|..
T Consensus 8 ~dvIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~~~~ 44 (370)
T d3coxa1 8 VPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGRSWDT 44 (370)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCSCS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCCC
Confidence 469999999999999999999875 4999998765543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.89 E-value=0.44 Score=38.63 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=27.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
..|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~ 60 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 60 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence 478999999999999998888777 677888754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.78 E-value=0.41 Score=38.06 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=28.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
..|+|+|+|+-|+.++..+...|.+ |++.|.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence 4689999999999999999999984 66677753
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.40 E-value=0.3 Score=41.57 Aligned_cols=33 Identities=30% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccEEEEcC-CHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGA-GVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~-G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|.|| |..|-.++..|.++|++|+.++++.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 46999997 9999999999999999999998853
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.80 E-value=0.63 Score=37.20 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+.|.|||.|..|-.+|..|...|.+|..+++..
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CceEEEeccccccccceeeeeccccccccccccc
Confidence 4679999999999999999999999999999854
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.36 E-value=0.51 Score=37.31 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=29.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
.+.|+|||-|.-|-+=|.+|+..|.+|+|==|.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~ 48 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS 48 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence 478999999999999999999999998885553
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=82.96 E-value=0.21 Score=40.55 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
-++|+|||+|.-|.-+|..|...+.. |+++.|+.
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~---V~l~~r~~ 40 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCRE---VCVWHMNE 40 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEE---EEEECSCH
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCe---EEEEEecH
Confidence 35899999999999999999887765 99998864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.79 E-value=0.28 Score=45.17 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
..+|+|||+|--|..+|..|+..|+ +++|+|..
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3589999999999999999999998 89999984
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.70 E-value=0.57 Score=40.81 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.0
Q ss_pred CccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 3 KKQIAIVG-AGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+++|+|.| +|+.|..++..|.+.|++|+.+++.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 57899999 6999999999999999999999863
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.68 E-value=0.66 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=30.9
Q ss_pred CccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|.| +|+.|..++..|.++|++|+++++..
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 57899999 79999999999999999999998754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.10 E-value=0.3 Score=33.19 Aligned_cols=33 Identities=12% Similarity=-0.067 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
|+|+|+|+|.-|-.++.+....|.. |+++...+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~---v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIA---VWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEE---EEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCE---EEEEcCCC
Confidence 6899999999999999999888865 88887654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=82.09 E-value=0.41 Score=37.81 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.5
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..++|+|+|+|+|-+|--++.+|...+.. |+++.|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~---i~I~nRt~ 51 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCA---VTITNRTV 51 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceE---EEeccchH
Confidence 35689999999999999999999887753 89988875
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.69 E-value=0.38 Score=38.45 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=27.6
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
+|+|||+|.-|.-+|..|...+.. |+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~---V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNE---VRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCE---EEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCE---EEEEEec
Confidence 689999999999999999988765 9998874
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=81.46 E-value=0.64 Score=40.91 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=28.6
Q ss_pred cEEEEc-CCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 5 QIAIVG-AGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 5 ~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+|+|+| +|+.|..++..|++.|++|+++|+-
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 499999 6999999999999999999999873
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.39 E-value=0.35 Score=38.49 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=28.6
Q ss_pred EEEEE-cCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVV-GLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~Vv-G~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|| |+|..|.-+|..|++.|.+ |++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~---V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 58999 6799999999999999876 99999976
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.37 E-value=0.78 Score=36.20 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=26.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceE-EEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPI-VFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~-iie~~ 35 (418)
..|+|+|+|+.|+.++..+...|.+++ +.+.+
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~ 62 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV 62 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence 479999999999999998888888655 45554
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=80.78 E-value=0.41 Score=42.03 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=28.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||+|.+|+-+|..+++.|.. |.++.+.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~---V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLS---TIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCC---EEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC---EEEEecCC
Confidence 499999999999999999998865 99998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.74 E-value=0.62 Score=36.90 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=28.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
..|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence 368999999999999999999886 677787753
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=80.71 E-value=0.81 Score=40.28 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=31.3
Q ss_pred CccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|.| +|+.|..++..|.+.|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 47899999 78999999999999999999999864
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=0.82 Score=40.22 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=31.1
Q ss_pred CCCccEEEEc-CCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVG-AGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG-~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|. ++|+|.| +|+.|-.++..|.+.|.+|+.+|+.+
T Consensus 1 M~-kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~ 36 (346)
T d1ek6a_ 1 MA-EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH 36 (346)
T ss_dssp CC-SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CC-CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 65 5899999 69999999999999999999998743
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.57 E-value=0.44 Score=35.79 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=29.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|+|+|..|..+|..|...|.. |.++..++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~---v~vid~d~~ 34 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDKD 34 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC---cceecCChh
Confidence 689999999999999999988765 999988663
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.30 E-value=0.36 Score=42.21 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=30.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...+.|+|||+|.+|+.+|..|+.+... .+|+++.+.+
T Consensus 48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~-~~~~~~~~~~ 85 (311)
T d2gjca1 48 FAVSDVIIVGAGSSGLSAAYVIAKNRPD-LKVCIIESSV 85 (311)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCTT-SCEEEECSSS
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCCC-CeEEEEEcCC
Confidence 3456799999999999999999875211 3599999875
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=80.23 E-value=0.83 Score=39.08 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-CCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGL-QKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~-G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+.++|+|.|| |..|-.++..|.+.|.. |+.+.|+.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence 3467999995 99999999999998865 99999865
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=80.18 E-value=0.72 Score=36.77 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=31.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.++++|+|+|+|-+|--++..|...+. ++++++.|+.
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~--~~i~i~nR~~ 52 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGL--KEIKLFNRRD 52 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCC--ceEeeeccch
Confidence 568999999999999889999988765 4799999875
|