Citrus Sinensis ID: 014835

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDKVKRKRKRKRKRNHTPKD
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccEEccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHccccccccccccHHHHHHHHHHHHccccccccccEEEEccccccccccccccccEEEEccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEEccccEEEEEEEcccccccccEEEEEccEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHEEEcccccccEccccHcccccccEEEccccccHccccccHccHHcccEEEcccccHHccccccccHHHcccccHccHHHHHHHHccccccccccccHHccccccEEEccccccHHcccHHcccHHHHHEEEcccccccccccHHHHHHcccEEEccccccccccccHHHHHHHcccHccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHcccccccEEEEEcccccccccccccEEEEEEEEEccccccccccEEEEEEEEcccEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEccccEEEEEEEEEccccccEEEEEcEEEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnfpsvtschVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLkslqsieisncpiferfteipscnidggigiERLASCRLVLEdcsslqslpsslcmfksltsleiidcqyfmilpdelgnLEALETLIVDrtamrevpeslgqlSSLKILVLSNIKRLPEYLQLHLqlpenglegipeylrrsprkltldpnelseivkdgwmkqsfdgnigitksmyfpgkeipkwfryqsmgssvnlkkrpadflnnKILVGFAFCIVVafpasrycdfehqirrksrpsvfgnydvfcdwkhksqgnldrrslgrisyvesDHVFLGSyllgsedlskrddevsfdevsfytkrddevsFYNCSlnkriygeycevkqcgihfvyaqdstdkVKRKRKrkrkrnhtpkd
Flexible Loop (DISEMBL)
mnfpsvtscHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREvpeslgqlsslKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRrsprkltldpnelseivkdgwmkqsfDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEhqirrksrpsvFGNYDVFCDWkhksqgnldrrslGRISYVESDHVFLGSYLlgsedlskrddeVSFDEvsfytkrddevsfYNCSLNKRIYGEYCEVKQCGIhfvyaqdstdkvkrkrkrkrkrnhtpkd
Low Complexity Region (SEG)
MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLEsisssifklkslqsiEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCsslqslpsslCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDKVkrkrkrkrkrNHTPKD
Disordered region (IsUnstruct)
*****VTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLR*****LTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDL****DEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQ**********************
Disordered Region (DISOPRED)
MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYA***********************
Disordered Region (DISEMBL)
MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDS********************
Disordered Region (DISPRO)
MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQD*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDKVKRKRKRKRKRNHTPKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.589	0.215	0.297	8e-10
Q9LVT1	623	Putative disease resistan	no	no	0.362	0.242	0.287	1e-09
P49606	2493	Adenylate cyclase OS=Usti	N/A	no	0.450	0.075	0.293	6e-09
Q7KRY7	1851	Protein lap4 OS=Drosophil	yes	no	0.431	0.097	0.287	2e-08
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.338	0.094	0.318	3e-08
P70587	1490	Leucine-rich repeat-conta	yes	no	0.338	0.094	0.318	3e-08
Q96NW7	1537	Leucine-rich repeat-conta	yes	no	0.400	0.108	0.278	2e-07
Q01631	2300	Adenylate cyclase OS=Neur	N/A	no	0.376	0.068	0.274	3e-07
Q9FW44	787	Disease resistance protei	no	no	0.347	0.184	0.276	3e-07
A6H6A4	596	Leucine-rich repeat and I	no	no	0.371	0.260	0.294	3e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 65.5 bits (158), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 53/299 (17%)

Query: 20   GIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSC 78
            GI+ELPSSI +  +++ KL + +   L ++ SSI +LKSL S+ +S C   E   E    
Sbjct: 723  GIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEI-- 780

Query: 79   NIDGGIGIERL--ASCRLVLEDCSSLQSLPS-SLCMFKS---------------LTSLEI 120
               G +   R+  AS  L+L   SS+  L    + MF+                L SLE 
Sbjct: 781  ---GDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEY 837

Query: 121  IDCQYFMI----LPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRL--- 173
            ++  Y  +    LP+E+G+L +L+ L + R     +P S+ QL +L+ L L + +RL   
Sbjct: 838  LNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQL 897

Query: 174  ----PEYLQLHLQLPENGLEGIPEYL---RRSPRKLTLDP--NELSEIVKDGWMKQ---S 221
                PE  +LH+      L+ I  YL   R+   ++ LD   N+    +    M Q   S
Sbjct: 898  PELPPELNELHVDC-HMALKFI-HYLVTKRKKLHRVKLDDAHNDTMYNLFAYTMFQNISS 955

Query: 222  FDGNIGITKSM---YFPGK----EIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFC 273
               +I  + S+    F G+    +IP WF +Q   SSV++      ++ +K L GFA C
Sbjct: 956  MRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFL-GFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 40/191 (20%)

Query: 2   NFPSVTS-CHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSM---------------- 44
           +FP  TS  ++ +L L +V + EL SS+  L NL KLY++ C +                
Sbjct: 404 DFPIPTSLTNLRSLWLERVHVPELSSSMIPLKNLHKLYLIICKINNSFDQTAIDIAQIFP 463

Query: 45  ------------LESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASC 92
                       L  + S+I  + SL SI I+NCP      E+P         I +L + 
Sbjct: 464 KLTDITIDYCDDLAELPSTICGITSLNSISITNCP---NIKELPK-------NISKLQAL 513

Query: 93  RLV-LEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE 151
           +L+ L  C  L+SLP  +C    L  ++I  C     LP+++GN+  LE + +   ++  
Sbjct: 514 QLLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDMRECSLSS 573

Query: 152 VPESLGQLSSL 162
           +P S   L+SL
Sbjct: 574 IPSSAVSLTSL 584

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P49606|CYAA_USTMA Adenylate cyclase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UAC1 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 44/232 (18%)

Query: 3    FPSVTSCHVYTLELVKVG---IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQ 59
            FP V  C V +L  + V    I ELP+ I  L NL++ +I+  + LE +  S+ +L SL+
Sbjct: 1218 FPKVI-CDVPSLVDLDVSFNSITELPAEIANLINLER-FILAGNELEKLPDSMSELVSLR 1275

Query: 60   SIEI------------------------SNCPIFE-----RFTEIP-SCNIDGGIGIERL 89
            +I++                        +N   FE     + T++    N    + I  L
Sbjct: 1276 TIDLRRNKVQDVSSLLGLPRLQNIQAESNNIKSFEATLGPQLTQVELGRNPLSKVRIAAL 1335

Query: 90   ASCRLVLEDCSSLQSLPSSLCMFKSLTSLE--IIDCQYFMILPDELGNLEALETLIVDRT 147
             +C L   D SS         +F  L +L    +D    ++LPD LG+L+ LE L     
Sbjct: 1336 TTCDLTSLDLSSTNMTRLEEGLFPQLPALVKLTLDGNQLVVLPDTLGDLKRLEMLSCSNN 1395

Query: 148  AMREVPESLGQLSSLKILVL--SNIKRLPEYLQL-----HLQLPENGLEGIP 192
             +  +PES+G L +LK L++  +N+K LP+ L L     H+ L  N LE  P
Sbjct: 1396 LLATLPESIGDLKALKELLVHNNNLKTLPQTLWLCESLAHINLSSNLLESFP 1447

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 29/209 (13%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
           I++LP +   L  L+KL + D + +  +   I   ++L  +++S         +IP    
Sbjct: 49  IRDLPKNFFRLHRLRKLGLSD-NEIGRLPPDIQNFENLVELDVSR-------NDIPDIPD 100

Query: 81  DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE 140
           D    I+ L S ++     + +  LPS     K+LT L + D      LP + G+L  LE
Sbjct: 101 D----IKHLQSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMS-LTTLPADFGSLTQLE 155

Query: 141 TLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYL--------------QLHLQLP 184
           +L +    ++ +PE++ QL+ LK L L +  I+ LP YL              QL    P
Sbjct: 156 SLELRENLLKHLPETISQLTKLKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPP 215

Query: 185 ENGLEGIPEYLRRSPRKLTLDPNELSEIV 213
           E GL     YL  S  +L   PNE+S +V
Sbjct: 216 ELGLLTKLTYLDVSENRLEELPNEISGLV 244

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 13/154 (8%)

Query: 14  LELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT 73
           L+L      ELP  ++ + NL++L++ D + L+ +  SI KLK L  +++S   I     
Sbjct: 189 LDLGNNEFSELPEVLDQIQNLRELWM-DNNALQVLPGSIGKLKMLVYLDMSKNRI----- 242

Query: 74  EIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL 133
           E    +I G   +E L      L   + LQ LP S+ + K LT+L++ D Q  M LP+ +
Sbjct: 243 ETVDMDISGCEALEDL------LLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTM-LPNTI 295

Query: 134 GNLEALETLIVDRTAMREVPESLGQLSSLKILVL 167
           GNL  LE        +  +P ++G L SL+ L +
Sbjct: 296 GNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAV 329

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 13/154 (8%)

Query: 14  LELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT 73
           L+L      ELP  ++ + NL++L++ D + L+ +  SI KLK L  +++S   I     
Sbjct: 189 LDLGNNEFSELPEVLDQIQNLRELWM-DNNALQVLPGSIGKLKMLVYLDMSKNRI----- 242

Query: 74  EIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL 133
           E    +I G   +E L      L   + LQ LP S+ + K LT+L++ D Q  M LP+ +
Sbjct: 243 ETVDMDISGCEALEDL------LLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTM-LPNTI 295

Query: 134 GNLEALETLIVDRTAMREVPESLGQLSSLKILVL 167
           GNL  LE        +  +P ++G L SL+ L +
Sbjct: 296 GNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAV 329

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 41/208 (19%)

Query: 14  LELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT 73
           L+L      ELP  ++ + NL++L++ D + L+ +  SI KLK L  +++S   I     
Sbjct: 189 LDLGNNEFGELPEVLDQIQNLRELWM-DNNALQVLPGSIGKLKMLVYLDMSKNRI----- 242

Query: 74  EIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI----- 128
           E    +I G   +E L      L   + LQ LP S+ + K LT+L++ D Q  M+     
Sbjct: 243 ETVDMDISGCEALEDL------LLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIG 296

Query: 129 -----------------LPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVL--SN 169
                            LP  +G L +L TL VD   + E+P  +G   ++ ++ L  + 
Sbjct: 297 NLSLLEEFDCSCNELESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNK 356

Query: 170 IKRLPEYL-QLH----LQLPENGLEGIP 192
           ++ LPE + Q+     L L +N L+ +P
Sbjct: 357 LEFLPEEIGQMQKLRVLNLSDNRLKNLP 384

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

>sp|Q01631|CYAA_NEUCR Adenylate cyclase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cr-1 PE=3 SV=2

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 29/186 (15%)

Query: 26   SSIECLSNLKKLYIV--DCSMLESISSSIFKLKSLQSIEISNCPI--FERFTEIPSCNID 81
            S+I+ LS+L +L I+  D + +   S S  +L+SL+   +++ PI  FE    +P+  I 
Sbjct: 1069 STIDVLSDLPRLEILSADHNQISKFSGSFERLRSLK---LNSNPIVKFEVKAPVPTLKI- 1124

Query: 82   GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALET 141
              +   +LAS    +++  +L+ L              I+D  YF+ LP+++GNL+ L+ 
Sbjct: 1125 LNLSNAQLASIDESIDNLMNLERL--------------ILDSNYFVSLPNQIGNLKKLDH 1170

Query: 142  LIVDRTAMREVPESLGQLSSLKILVL--SNIKRLPEYLQL-----HLQLPENGLEGIPEY 194
            L +    + E+P  +G L+ L+ L +  +N+++LP  +       HL    N L   P+ 
Sbjct: 1171 LSMANNHLGELPPEIGCLTELRTLDVHGNNMRKLPNEIWWANKLEHLNASSNILTEFPKP 1230

Query: 195  LRRSPR 200
              R+P+
Sbjct: 1231 ASRAPQ 1236

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 36/181 (19%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISS---------------------- 50
           +L L +V + EL S    L NL K++++ C +  S                         
Sbjct: 581 SLWLKRVHVPELTSCTIPLKNLHKIHLIFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDD 640

Query: 51  -----SIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSL 105
                SIF + SL S+ I+NCP   R  E+P  N+     +ERL      L  C  L SL
Sbjct: 641 LLELKSIFGITSLNSLSITNCP---RILELPK-NLSNVQSLERLR-----LYACPELISL 691

Query: 106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKIL 165
           P  +C    L  ++I  C   + LP++ G L +LE + +   ++  +P S+  L SL+ +
Sbjct: 692 PVEVCELPCLKYVDISQCVSLVSLPEKFGKLGSLEKIDMRECSLLGLPSSVAALVSLRHV 751

Query: 166 V 166
           +
Sbjct: 752 I 752

Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Arabidopsis thaliana (taxid: 3702)

>sp|A6H6A4|LRIQ4_MOUSE Leucine-rich repeat and IQ domain-containing protein 4 OS=Mus musculus GN=Lrriq4 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 18/173 (10%)

Query: 2   NFPSVTSCHVYTLELVKVG---IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSL 58
           +FP V  C +  LE++ +    +++LP SI  LSNLK L +    +L S    IF L SL
Sbjct: 353 HFP-VQICALKNLEILALDDNKVRQLPPSISLLSNLKILGLTGNDLL-SFPEEIFSLISL 410

Query: 59  QSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSL 118
           + + I       + + +P         I+RL + + +  + + L+ LP+SL +   + +L
Sbjct: 411 EKLYIGQDQ-GSKLSSLPE-------NIKRLMNLKELYIENNRLEQLPASLGL---MPNL 459

Query: 119 EIIDCQYFMI--LPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
           E++DC++ ++  LPD +     L  L+++   +  +PE+L  L +LK+L L N
Sbjct: 460 EVLDCRHNLLKQLPDAICRTRNLRELLLEDNLLCCLPENLDHLVNLKVLTLMN 512

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.839	0.311	0.305	3e-24
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.872	0.233	0.271	1e-22
255563202	1158	leucine-rich repeat containing protein,	0.652	0.234	0.298	1e-20
296081002	599	unnamed protein product [Vitis vinifera]	0.829	0.577	0.284	8e-19
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.841	0.244	0.254	2e-18
255537139	1137	leucine-rich repeat-containing protein,	0.767	0.281	0.276	3e-18
451798990	1335	TMV resistance protein N-like protein 7	0.402	0.125	0.381	5e-18
255544956	1403	leucine-rich repeat containing protein,	0.865	0.257	0.289	7e-18
451798988	1219	TMV resistance protein N-like protein 6	0.402	0.137	0.376	1e-17
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.836	0.237	0.254	1e-17

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 189/412 (45%), Gaps = 62/412 (15%)

Query: 3    FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
            FP + S ++  L L    I+E+PSSIE L+ L +LY+ +C  L SI SSI KLKSL+ + 
Sbjct: 747  FPEI-SGNIKYLYLQGTAIEEVPSSIEFLTALVRLYMTNCKQLSSIPSSICKLKSLEVLG 805

Query: 63   ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
            +S C   E F EI          +E + S R +  D ++++ LPSS+   K LT L+ + 
Sbjct: 806  LSGCSKLENFPEI----------MEPMESLRRLELDATAIKELPSSIKYLKFLTQLK-LG 854

Query: 123  CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS--NIKRLPEYLQLH 180
                  L   +  L++L  L +  TA++E+P S+  L  LK L LS   IK LPE     
Sbjct: 855  VTAIEELSSSIAQLKSLTHLDLGGTAIKELPSSIEHLKCLKHLDLSGTGIKELPELPSSL 914

Query: 181  LQLPEN---GLEGIPEYLRRSPRKLT------LDPNELSEIVKDGWMKQSFDGNIGITKS 231
              L  N    L+ +  +  R+ ++L       LD  +L   V+         G I     
Sbjct: 915  TALDVNDCKSLQTLSRFNLRNFQELNFANCFKLDQKKLMADVQCKIQSGEIKGEIF---Q 971

Query: 232  MYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIR 291
            +  P  EIP WFR Q+MGSSV  KK P   LN   + G AFCIV A P     D      
Sbjct: 972  IVLPKSEIPPWFRGQNMGSSVT-KKLP---LNCHQIKGIAFCIVFASPTPLLSD------ 1021

Query: 292  RKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSK--RDD 349
                     N+   CD K  +               E DHV L  Y L  +  +   + D
Sbjct: 1022 -------CANFSCKCDAKSDNG--------------EHDHVNLLWYDLDPQPKAAVFKLD 1060

Query: 350  EVSFDEVSFYTKRDDEVSFYNCS-LNKRIYG--EYCEVKQCGIHFVYAQDST 398
            +     + + + R    S Y+ S +    Y   E+ ++K+CG++F++ ++ +
Sbjct: 1061 DSDHMLLWYESTRTGLTSEYSGSEVTFEFYDKIEHSKIKRCGVYFLFDKNRS 1112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 205/468 (43%), Gaps = 104/468 (22%)

Query: 3    FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
            FP V++  +  L L    I+E+PSSIECL  L +L++ +C   E + SSI KL+ LQ + 
Sbjct: 848  FPKVSNT-IKELYLNGTAIREIPSSIECLFELAELHLRNCKQFEILPSSICKLRKLQRLN 906

Query: 63   ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
            +S C  F  F E+          +E +   R +  + + +  LPS +   K L  LE+ +
Sbjct: 907  LSGCVQFRDFPEV----------LEPMVCLRYLYLEQTRITKLPSPIGNLKGLACLEVGN 956

Query: 123  CQYF--------MILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS--NIKR 172
            CQ+         + LP E   L+ L  L +D   + EVP+SLG +SSL++L LS  N + 
Sbjct: 957  CQHLRDIECIVDLQLP-ERCKLDCLRKLNLDGCQIWEVPDSLGLVSSLEVLDLSGNNFRS 1015

Query: 173  LPEYLQLHLQLPENG------LEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQSFDGNI 226
            +P  +    +L   G      LE +PE     PR   LD +    +        + +GNI
Sbjct: 1016 IPISINKLFELQYLGLRNCRNLESLPEL---PPRLSKLDADNCWSLRTVSCSSTAVEGNI 1072

Query: 227  G--------------------------ITKSMY--------------FPGKEIPKWFRYQ 246
                                        TK +Y               PG   P+WF +Q
Sbjct: 1073 FEFIFTNCKRLRRINQILEYSLLKFQLYTKRLYHQLPDVPEEACSFCLPGDMTPEWFSHQ 1132

Query: 247  SMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFG----NY 302
            S GS V   +  + + + K L GF+ C V+AF +     F H ++ K           ++
Sbjct: 1133 SWGSIVTF-QLSSHWAHTKFL-GFSLCAVIAFHS-----FSHSLQVKCTYHFHNEHGDSH 1185

Query: 303  DVFCDWKHKSQGN------LDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVS-FDE 355
            D++C + H   GN       D     RI+   S H+F+G   L    ++K +D  S + E
Sbjct: 1186 DLYC-YLHVCYGNDLYCYLHDWYGEKRIN---SKHIFVG---LDPCLVAKENDMFSKYSE 1238

Query: 356  VSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDKVKR 403
            VS   + +D   +        +  + C+V +CG+  ++A D  D+++R
Sbjct: 1239 VSVEFQLEDMNGYL-------LPLDLCQVVECGVRLLHANDE-DEIQR 1278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 153/338 (45%), Gaps = 66/338 (19%)

Query: 3    FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
            FP V+  ++  L L +  I+E+P SIE LS L  L + +C+ LE I S+IFKLKSL  + 
Sbjct: 716  FPEVSR-NIRYLYLNETAIQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSLGVLI 774

Query: 63   ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
            +S C   E F EI          +E     + +  D +++ +LP + C  K+L  L   D
Sbjct: 775  LSGCKKLESFPEI----------LETTNHLQHLSLDETAMVNLPDTFCNLKALNMLNFSD 824

Query: 123  CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVL--SNIKRLPEYLQLH 180
            C     LP  + NL++L  L      +  +P  L  LSS+  L L  SN   +P  +   
Sbjct: 825  CSKLGKLPKNMKNLKSLAELRAGGCNLSTLPADLKYLSSIVELNLSGSNFDTMPAGINQL 884

Query: 181  LQLPENGLEG------IPE------YLR-RSPRKLT------------------------ 203
             +L    + G      +PE      YL  R  R L                         
Sbjct: 885  SKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSISGLKQLFELGCSNSLDDETFVF 944

Query: 204  -----LDPNELSEIVKDGWMK-QSFD-GNIGITKSMY--------FPGKEIPKWFRYQSM 248
                 LD +  ++I+    +K Q F  G     + +Y        +PG EIP+WF  +S+
Sbjct: 945  TNCFKLDQDNWADILASAQLKIQHFAMGRKHYDRELYDETFICFTYPGTEIPEWFADKSI 1004

Query: 249  GSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDF 286
            GSSV ++  P D+LN++ L GF+ C+VVAF     C++
Sbjct: 1005 GSSVTIQHLPPDWLNHRFL-GFSVCLVVAFDDRFLCEY 1041

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081002|emb|CBI18506.3| unnamed protein product [Vitis vinifera]

 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 191/446 (42%), Gaps = 100/446 (22%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI----- 75
           I ELP SI  L+ L  L + +C  L+S+ SSI KLKSL+++ +S C   E F EI     
Sbjct: 145 INELPFSIGYLTGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIMENME 204

Query: 76  --PSCNIDGGI------GIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYF 126
                 +DG         IE L     L L DC +L +LP S+   KSL +L +  C   
Sbjct: 205 HLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCSKL 264

Query: 127 MILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPE---------YL 177
             LP+ LG+L+ L  L  D T +R+ P S+  L +L+I  L+N   LP          +L
Sbjct: 265 QQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEI--LNNFFSLPAGISKLSKLRFL 322

Query: 178 QLH-----LQLPE---NGLEGIPEY-----------------------LRRSPRKLTLD- 205
            L+     LQ+PE   + +E   +Y                       +   P    LD 
Sbjct: 323 SLNHCKSLLQIPELPSSIIEVNAQYCSSLNTILTPSSVCNNQPVCRWLVFTLPNCFNLDA 382

Query: 206 --PNELSEIVKDGWMKQSFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLN 263
             P      +    M+ +F  + G   S++ PG EIP W   Q++GS V ++  P  F +
Sbjct: 383 ENPCSNDMAIISPRMQINFLPDFGF--SIFLPGSEIPDWISNQNLGSEVTIELPPHWFES 440

Query: 264 NKILVGFAFCIVVAFP--ASRYCDFEHQIRRKSRPSVFGN-----YDVFCDWKHKSQGNL 316
           N   +GFA C V AF   A   C  +   + +S  S F       + + C      +GN 
Sbjct: 441 N--FLGFAVCCVFAFEDIAPNGCSSQLLCQLQSDESHFRGIGHILHSIDC------EGNS 492

Query: 317 DRRSLGRISYVESDHVFLGSYLLGSEDLSKRD--DEVSFDEVSFYTKRDDEVSFYNCSLN 374
           + R       ++S H++L     G   +S  D  +     + SF         F +C  +
Sbjct: 493 EDR-------LKSHHMWLAYKPRGRLRISYGDCPNRWRHAKASF--------GFISCCPS 537

Query: 375 KRIYGEYCEVKQCGIHFVYAQDSTDK 400
                    V++CGIH +YAQD  ++
Sbjct: 538 NM-------VRKCGIHLIYAQDHEER 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 199/459 (43%), Gaps = 108/459 (23%)

Query: 3    FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
            FP V+  ++  L L    I+E+PSSIECL  L +L++ +C   E + SSI KLK L+ + 
Sbjct: 862  FPKVSR-NIRELYLDGTAIREIPSSIECLCELNELHLRNCKQFEILPSSICKLKKLRRLN 920

Query: 63   ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
            +S C  F  F E+          +E +   R +  + + +  LPS +   K L  LE+ +
Sbjct: 921  LSGCLQFRDFPEV----------LEPMVCLRYLYLEQTRITKLPSPIGNLKGLACLEVGN 970

Query: 123  CQYFMILPDELG---------NLEALETLIVDRTAMREVPESLGQLSSLKILVLS--NIK 171
            C+Y   +   +G         +L+ L  L +D  ++ EVP+SLG LSSL++L LS  N++
Sbjct: 971  CKYLEDIHCFVGLQLSKRHRVDLDCLRKLNLDGCSLSEVPDSLGLLSSLEVLDLSGNNLR 1030

Query: 172  RLPEYLQLHLQLPENG------LEGIPEYLRRSPRKLTLDPNEL----------SEIVKD 215
             +P  +    +L   G      L+ +PE     PR   LD +            S +V+ 
Sbjct: 1031 TIPISINKLFELQYLGLRNCKRLQSLPEL---PPRLSKLDVDNCQSLNYLVSRSSTVVEG 1087

Query: 216  GWMKQSFDGNIGI-----------------TKSMY--------------FPGKEIPKWFR 244
               +  F   + +                 TK +Y               PG   P+WF 
Sbjct: 1088 NIFEFIFTNCLRLPVVNQILEYSLLKFQLYTKRLYHQLPDVPEGACSFCLPGDVTPEWFS 1147

Query: 245  YQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKS----RPSVFG 300
            +QS GS     +  + ++N++ L GF+ C V+AF +       H ++ K     R     
Sbjct: 1148 HQSWGSIATF-QLSSHWVNSEFL-GFSLCAVIAFRS-----ISHSLQVKCTYHFRNEHGD 1200

Query: 301  NYDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLG--SYLLGSEDLSKRDDEVSFDEVSF 358
            ++D +C       G  D +       ++S H+F+G    L+  ED    +    + EVS 
Sbjct: 1201 SHDRYC----YLYGWYDEKR------IDSAHIFVGFDPCLVAKEDYMFSE----YSEVSI 1246

Query: 359  YTKRDDEVSFYNCSLNKRIYG-EYCEVKQCGIHFVYAQD 396
              + +D        +N  +   + C+V +CG+  +Y  +
Sbjct: 1247 EFQVED--------MNGNLLPIDLCQVHECGVRVLYEDE 1277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 180/409 (44%), Gaps = 89/409 (21%)

Query: 20   GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
             ++ +PS+    S L  L +  C+ LES+ SSI KLKSL+S+ +  C   + F EI    
Sbjct: 662  NLRSMPSTTRWKS-LSTLEMNYCTKLESLPSSICKLKSLESLSLCGCSNLQSFPEILESM 720

Query: 80   ------IDGGIGIERLASC--------RLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY 125
                  +  G  I+ L S          + LE+C +L  LP S C  K+L  L +  C  
Sbjct: 721  DRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCNLKALYWLFLTFCPK 780

Query: 126  FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEY-LQLHLQ 182
               LP++L NL  LE L V    + ++P  +  LS +  L LS     +LP +   L+L+
Sbjct: 781  LEKLPEKLSNLTTLEDLSVGVCNLLKLPSHMNHLSCISKLDLSGNYFDQLPSFKYLLNLR 840

Query: 183  ------------LPE--NGLEGIPEYLRRSPRKLT------------------------- 203
                        LPE  + L  I  +  RS   ++                         
Sbjct: 841  CLDISSCRRLRSLPEVPHSLTDIDAHDCRSLETISGLKQIFQLKYTHTFYDKKIIFTSCF 900

Query: 204  -LDPNELSEIVKDG--WMKQ-SFDGNIGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPA 259
             +D +  S+ + D   W+++ +       + S+++PG +IPKWF YQS GSS+ ++  P 
Sbjct: 901  KMDESAWSDFLADAQFWIQKVAMRAKDEESFSIWYPGSKIPKWFGYQSEGSSIVIQLHPR 960

Query: 260  DFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGN--LD 317
               +N  L+GF  C+V+AF      +FE+        + F  +DV C ++ K+      D
Sbjct: 961  SHKHN--LLGFTLCVVLAFED----EFEYH-------NSF--FDVLCVYQLKNYRGEYTD 1005

Query: 318  RRSL--------GRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVSF 358
             + +        G+  YV SDHV L          S   +E+S++E SF
Sbjct: 1006 CKEVYSSRTHVSGKNKYVGSDHVIL---FYDPNFSSTEANELSYNEASF 1051

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 98/186 (52%), Gaps = 18/186 (9%)

Query: 3   FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQS 60
           FP V     H+  L L    IK LP SIE L+ L  L + +C  LES+  SIFKLKSL++
Sbjct: 740 FPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKT 799

Query: 61  IEISNCPIFERFTEIPSCNIDG-------GIGIERLAS--------CRLVLEDCSSLQSL 105
           + +SNC   ++  EI   N++        G GI  L S          L L++C  L SL
Sbjct: 800 LILSNCTRLKKLPEIQE-NMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASL 858

Query: 106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKIL 165
           P S C   SL +L +  C     LPD LG+L+ L  L  D + ++EVP S+  L++L+IL
Sbjct: 859 PQSFCELTSLRTLTLCGCSELKDLPDNLGSLQCLTELNADGSGVQEVPPSITLLTNLQIL 918

Query: 166 VLSNIK 171
            L+  K
Sbjct: 919 SLAGCK 924

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 190/439 (43%), Gaps = 78/439 (17%)

Query: 3    FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQS 60
             PS   C   +  L L    IKELP SI CLS+L +L +  C ML S+  SI +LK L+ 
Sbjct: 909  LPSSIGCLTSLVKLNLAVTEIKELPPSIGCLSSLVELNLSQCPMLGSLPFSIGELKCLEK 968

Query: 61   IEISNCPIFERFTEIPSCNIDGGIGIERLASCRLV-LEDCSSLQSLPSSLCMFKSLTSLE 119
            + +       R   IPS        I  L   + V L  C+ L  LP SL    SL  L 
Sbjct: 969  LYLCG---LRRLRSIPS-------SIRELKRLQDVYLNHCTKLSKLP-SLSGCSSLRDL- 1016

Query: 120  IIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKR---LPEY 176
            ++     + +P  LG L +L+ L++       +P ++ QLS L++L +S  KR   LPE 
Sbjct: 1017 VLSYSGIVKVPGSLGYLSSLQVLLLKGNNFMRIPATIRQLSWLEVLDISYCKRLKALPEL 1076

Query: 177  LQ----------LHLQLPENGLEGIPEYLRRSPRK---------LTLDPNELSEIVKDGW 217
             Q            L+   + L    E   +SP           ++L+ N  S IV+   
Sbjct: 1077 PQRIRVLVAHNCTSLKTVSSPLIQFQESQEQSPDDKYGFTFANCVSLEKNARSNIVESAL 1136

Query: 218  MKQSFDGN-----------IGITKSMYFPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKI 266
            +K                 I ++  + FPG EIP+ FRYQ+ G+SV     P+ + NNK 
Sbjct: 1137 LKTQHLATAVLELLTSYEEILVSPVVCFPGSEIPECFRYQNTGASVT-TLLPSKWHNNK- 1194

Query: 267  LVGFAFCIVVAFPASRYCD---FEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRSLGR 323
            LVGF FC V+      Y D   F+   R ++    +G+   F   +    GN        
Sbjct: 1195 LVGFTFCAVIELENRHYQDGFTFQCDCRIENE---YGDSLEFTSKEIGEWGNQFE----- 1246

Query: 324  ISYVESDHVFLGS----YLLGSE--DLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRI 377
                E+DHVFL +    Y+L  E  +  +++   +  E + YT+ + +V     +  K  
Sbjct: 1247 ---FETDHVFLWNTSCIYILTEERYEQLRKNSCTAIFEFACYTEDEYKVMLPGANSFK-- 1301

Query: 378  YGEYCEVKQCGIHFVYAQD 396
                  VK  G + VYA+D
Sbjct: 1302 ------VKNSGFNPVYAKD 1314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 98/186 (52%), Gaps = 18/186 (9%)

Query: 3   FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQS 60
           FP V     H+  L L    IK LP SIE L+ L  L + +C  LES+  SIFKLKSL++
Sbjct: 732 FPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKT 791

Query: 61  IEISNCPIFERFTEIPSCNIDG-------GIGIERLAS--------CRLVLEDCSSLQSL 105
           + +SNC   ++  EI   N++        G GI  L S          L L++C  L SL
Sbjct: 792 LILSNCTRLKKLPEIQE-NMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASL 850

Query: 106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKIL 165
           P S C   SL +L +  C     LPD+LG+L+ L  L  D + ++EVP S+  L++L+ L
Sbjct: 851 PQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKL 910

Query: 166 VLSNIK 171
            L+  K
Sbjct: 911 SLAGCK 916

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 200/459 (43%), Gaps = 110/459 (23%)

Query: 3    FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
            FP V++ ++  L L    I+E+PSSI+CL  L +L++ +C   E + SSI  L+ L+ + 
Sbjct: 824  FPKVSN-NIKELYLDGTAIREIPSSIDCLFELVELHLRNCKQFEILPSSICTLRKLERLN 882

Query: 63   ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
            +S C  F  F E+          +E +   R +  + + +  LPS +   K L  LE+ +
Sbjct: 883  LSGCLQFRDFPEV----------LEPMVCLRYLYLEETRITKLPSPIGNLKGLACLEVGN 932

Query: 123  CQYF--------MILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS------ 168
            C+Y         + L +   +L+ L  L +D   +  VP+SLG LSSL++L LS      
Sbjct: 933  CKYLNDIECFVDLQLSERWVDLDYLRKLNLDGCHISVVPDSLGCLSSLEVLDLSGNNFST 992

Query: 169  ---NIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNEL----------SEIVKD 215
               +I +L E   L L+  +  LE +PE     PR   LD +            S +VK 
Sbjct: 993  IPLSINKLSELQYLGLRNCKR-LESLPEL---PPRLSKLDADNCESLNYLGSSSSTVVKG 1048

Query: 216  GWMKQSFDGNIGITK------------------------------SMYFPGKEIPKWFRY 245
               +  F   + + +                              S + PG   P+W  +
Sbjct: 1049 NIFEFIFTNCLSLCRINQILPYALKKFRLYTKRLHQLTDVLEGACSFFLPGGVSPQWLSH 1108

Query: 246  QSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRKSRPSVFGN---- 301
            QS GS+V   +  + + N+K L GF+ C V+AF +     F H ++ K     F N    
Sbjct: 1109 QSWGSTVTC-QLSSHWANSKFL-GFSLCAVIAFHS-----FGHSLQVKCTYH-FSNEHGD 1160

Query: 302  -YDVFCDWKHKSQGNLDRRSLGRISYVESDHVFLG--SYLLGSEDLSKRDDEVSFDEVSF 358
             +D++C + H   G  D +       ++S+H+ +G    L+  ED    +    + EVS 
Sbjct: 1161 SHDLYC-YLH---GWYDEKR------IDSEHILVGFDPCLVAKEDYMFSE----YSEVSV 1206

Query: 359  YTKRDDEVSFYNCSLNKRIYG-EYCEVKQCGIHFVYAQD 396
              + +D        +N  +   + C+V +CG+  +Y  +
Sbjct: 1207 EFQLED--------INGNLLPLDLCQVHKCGVRLLYEDE 1237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.366	0.126	0.306	2.3e-12
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.359	0.121	0.291	7.9e-12
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.362	0.362	0.296	7.6e-11
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.340	0.116	0.281	1.8e-10
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.606	0.216	0.262	4.3e-09
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.328	0.116	0.302	1.3e-08
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.330	0.109	0.254	4.3e-08
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.208	0.074	0.289	3.1e-07
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.347	0.121	0.263	3.5e-07
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.601	0.206	0.260	8.4e-07

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
 Identities = 54/176 (30%), Positives = 83/176 (47%)

Query:   234 FPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFP------ASRYCDFE 287
             FPG +IP WF +Q MGS +     P  + N+K  +G + C+VV F       A+R     
Sbjct:   993 FPGHDIPSWFSHQKMGSLIETDLLP-HWCNSKF-IGASLCVVVTFKDHEGHHANRL-SVR 1049

Query:   288 HQIRRKSRPSVFGNYDVFC--DWKHKSQGNL-DRRSLGRISYVESDHVFLGSYLLGSEDL 344
              + + KS+   F ++  FC   W      +  + R LG      SDHVF+ SY   +  +
Sbjct:  1050 CKSKFKSQNGQFISFS-FCLGGWNESCGSSCHEPRKLG------SDHVFI-SYNNCNVPV 1101

Query:   345 SKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDK 400
              K  +E +       T    E  FY     +R   E CE+ +CG++F+YA+D  D+
Sbjct:  1102 FKWSEETNEGNRCHPTSASFE--FYLTDETERKL-ECCEILRCGMNFLYARDENDR 1154

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 7.9e-12, Sum P(3) = 7.9e-12
 Identities = 49/168 (29%), Positives = 76/168 (45%)

Query:    21 IKELPSSIECLSNLKKLYIVDCSMLEXXXXXXXXXXXXXXXEISNCPIFERFTEIPSCNI 80
             +KELP  ++ ++NL  L +  C+ L                 +S C  F+ F E+ S ++
Sbjct:   694 LKELPDEMKDMTNLVFLNLRGCTSLLSLPKITTNSLKTLI--LSGCSSFQTF-EVISEHL 750

Query:    81 DG----GIGIERLASC-----RLV---LEDCXXXXXXXXXXCMFKSLTSLEIIDCQYFMI 128
             +     G  I  L        RL+   L+DC             KSL  L++  C    I
Sbjct:   751 ESLYLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSKLKI 810

Query:   129 LPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS---NIKRL 173
              PD    +E+L  L++D T++ E+P S+  LSSL+ L LS   NI+ L
Sbjct:   811 FPDVTAKMESLLVLLLDGTSIAELPCSIFHLSSLRRLCLSRNDNIRTL 858

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
 Identities = 51/172 (29%), Positives = 79/172 (45%)

Query:   234 FPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFP--ASRYCDFEHQIR 291
             FPG ++P WFR+Q +GSS+     P+ + ++K  +G + C VV+F     R   F    +
Sbjct:   181 FPGNDLPLWFRHQRIGSSMETNL-PSHWCDDKF-IGLSLCTVVSFKDYEDRTSRFSVICK 238

Query:   292 RKSRPSVFGNYDVF-CD---WKHKSQGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKR 347
              K R +  G+Y  F C+   WK +  G+       R+S   SDHVF+ SY        K 
Sbjct:   239 CKFR-NEDGDYISFTCNLGGWKEQC-GSSSHEESRRLS---SDHVFI-SYS-NCYHAKKN 291

Query:   348 DDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTD 399
             DD      ++          F+      +   + CEV +CG+  +YA D  D
Sbjct:   292 DD------LNRCCNTTASFKFFVTDGRAKRKLDCCEVVKCGMSLLYAPDEND 337

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 51/181 (28%), Positives = 80/181 (44%)

Query:   234 FPGKEIPKWFRYQSMGSSVNLKKRP--ADFLNNKILVGFAFCIVVAFPASRYCDFEHQIR 291
             +P  EIP WF +Q +G S+ +   P   D +N    VG A  +VV+F      D+E   +
Sbjct:  1004 YPATEIPSWFCHQRLGRSLEIPLPPHWCD-IN---FVGLALSVVVSFK-----DYEDSAK 1054

Query:   292 R---------KSRPSVFGNYD-VFCDWKHKSQGNLDRRSLGRISYVESDHVFLG--SYLL 339
             R         +++ S F  +D     W     G+L   S      + SDHVF+G  S  L
Sbjct:  1055 RFSVKCCGNFENKDSSFTRFDFTLAGWNEPC-GSLSHES----RKLTSDHVFMGYNSCFL 1109

Query:   340 GSEDLSKRDDEVSFDEVSF-YTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDST 398
               +++    +   + + SF +   DDE         K+I  E CEV +CG+  +Y  +  
Sbjct:  1110 -VKNVHGESNSCCYTKASFEFYVTDDET-------RKKI--ETCEVIKCGMSLMYVPEDD 1159

Query:   399 D 399
             D
Sbjct:  1160 D 1160

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 76/289 (26%), Positives = 120/289 (41%)

Query:   132 ELGNLEALETLIVDRTAMRE-VPESLGQLSSLKILVLSNIKRL---PEYLQLHLQ-LPEN 186
             ++ ++ +LE L + R      +   +  LS LK L L    +L   PE L  +LQ L  N
Sbjct:   840 KIPHISSLERLCLSRNEKISCLSNDIRLLSQLKWLDLKYCTKLVSIPE-LPTNLQCLDAN 898

Query:   187 GLEGIPEYLRRSPRKLTLDPNEL-SEIVKDGWMKQSFDGNIG-ITKSMY---FPGKEIPK 241
             G E +      +P    L   ++ S  +     K       G + ++++   FPG E+P 
Sbjct:   899 GCESLTTVA--NPLATHLPTEQIHSTFIFTNCDKLDRTAKEGFVPEALFSTCFPGCEVPS 956

Query:   242 WFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVV-AFP----ASRYCDFEHQIRRKSRP 296
             WF ++++GS + L   P    N    VG A C VV + P     +  C         S+ 
Sbjct:   957 WFCHEAVGSVLKLNLLP--HWNENRFVGIALCAVVGSLPNCQEQTNSCSVTCTFNIASKD 1014

Query:   297 SVFGN-YDVFCD---WKHKSQGN-LDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEV 351
             S  G+ Y +  D    +    GN LD++   ++   ESDHVF+  Y   S  +    D+ 
Sbjct:  1015 SKKGDPYKISFDRLVGRWNKHGNKLDKKG-NKLKKTESDHVFI-CYTRCSNSIKCLQDQH 1072

Query:   352 SFDEVSFYTKRDDEVSFYNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDK 400
             S       T  +  + F       R+     EV +CG+  VYA D   K
Sbjct:  1073 S----GTCTPTEAFLEFGVTDKESRL-----EVLKCGLRLVYASDEPQK 1112

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 52/172 (30%), Positives = 83/172 (48%)

Query:   227 GITKSMY---FPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRY 283
             G++++++   FPG ++P WF YQ+ GS++ LK  P  + +N++    A C VV FP    
Sbjct:   967 GVSEALFIACFPGSDVPSWFNYQTFGSALRLKL-PPHWCDNRLST-IALCAVVTFP---- 1020

Query:   284 CDFEHQIRRKSRPSVFGNYDVFCDWKHKSQGNLDRRS--LGRISYVES-----DHVFLG- 335
              D + +I R S        +  C++K++  G   R S  LG  S++ES     DHVF+G 
Sbjct:  1021 -DTQDEINRFS-------IECTCEFKNEL-GTCIRFSCTLGG-SWIESRKIDSDHVFIGY 1070

Query:   336 -------SYLLGSEDLSKRDDEVSFDEVSFYTKRDDEVSFYNCSLNKRIYGE 380
                     +L GS  L + D  V  +    +   D      NC L+  +Y E
Sbjct:  1071 TSSSHITKHLEGSLKLKEHDKCVPTEASIEFEVIDGAGEIVNCGLSL-VYEE 1121

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
 Identities = 39/153 (25%), Positives = 68/153 (44%)

Query:    20 GIKELPSSIECLSNLKKLYIVDCSMLEXXXXXXXXXXXXXXXEISNCPIFERFTEIPSCN 79
             G+K LP  ++ + +L  L +  C+ LE                +SNC  F+ F  I   N
Sbjct:   697 GLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVGLRTLI--LSNCSRFKEFKLIAK-N 753

Query:    80 ID----GGIGIERLASC-----RLV---LEDCXXXXXXXXXXCMFKSLTSLEIIDCQYFM 127
             ++     G  I+ L S      +L+   L+DC             K++  + +  C    
Sbjct:   754 LEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLE 813

Query:   128 ILPDELGNLEALETLIVDRTAMREVPESLGQLS 160
               P+   NL+ L+TL++D TA++++P+ L  LS
Sbjct:   814 SFPEVNQNLKHLKTLLLDGTAIKKIPDILHHLS 846

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 31/107 (28%), Positives = 55/107 (51%)

Query:   234 FPGKEIPKWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYCDFEHQIRRK 293
             +PG  +P WF +Q++GS +  +  P  +  N +L G A C VV+F         H+    
Sbjct:  1011 YPGYIVPSWFDHQAVGSVLEPRLEPHWY--NTMLSGIALCAVVSF---------HE---- 1055

Query:   294 SRPSVFGNYDVFCDWKHKSQ-GNL----DRRSLGRISYVESDHVFLG 335
             ++  + G++ V C  + +++ G+L    D   L     +E+DHVF+G
Sbjct:  1056 NQDPIIGSFSVKCTLQFENEDGSLRFDCDIGCLNEPGMIEADHVFIG 1102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
 Identities = 43/163 (26%), Positives = 73/163 (44%)

Query:    19 VGIKELPSSIECLSNLKKLYIVDCSMLEXXXXXXXXXXXXXXXEISNCPIFERFTEIPSC 78
             + +K LP  ++ + +L  L +  C+ L                 +S+C  FE+F  I  C
Sbjct:   715 IELKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKLKSLKTLI--LSHCKNFEQFPVISEC 772

Query:    79 NIDGGIGIERLASCRLVLEDCXXXXXXXXXXCMFKSLTSLEIIDCQYFMILPDELGNLEA 138
                    +E L      ++ C             + L  L++ DC+  + LPD LGNL +
Sbjct:   773 -------LEALYLQGTAIK-CIPTSIEN-----LQKLILLDLKDCEVLVSLPDCLGNLRS 819

Query:   139 LETLIVDRTA-MREVPESLGQLSSLKILVLSN--IKRLPEYLQ 178
             L+ LI+   + ++  PE    + S+KIL+L    IK++P  LQ
Sbjct:   820 LQELILSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILLQ 862

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 8.4e-07, P = 8.4e-07
 Identities = 74/284 (26%), Positives = 132/284 (46%)

Query:   129 LPDELGNLEALETLIVDR-TAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENG 187
             LP  +  L  L+ L +   T++  VPE    L  L     S++K + + L   +   +N 
Sbjct:   854 LPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNH 913

Query:   188 LEGI---PEYLRRSPRK-LTLDPNELSEIVKDGWMKQSFDGNIGITKSMY---FPGKEIP 240
                I    E L ++ ++ +T       +++   + ++ ++G + +++S++   FPG E+P
Sbjct:   914 STFIFTNCENLEQAAKEEITSYAQRKCQLLS--YARKRYNGGL-VSESLFSTCFPGCEVP 970

Query:   241 KWFRYQSMGSSVNLKKRPADFLNNKILVGFAFCIVVAFPASRYC-DFEHQIRRKSRPSVF 299
              WF ++++GS + +K  P    ++K L G A C VV+      C D + Q+ R S    F
Sbjct:   971 SWFCHETVGSELEVKLLP--HWHDKKLAGIALCAVVS------CLDPQDQVSRLSVTCTF 1022

Query:   300 GNYDVFCDWKHKS--QGNLDRRSLGRISYVESDHVFLGSYLLGSEDLSKRDDEVSFDEVS 357
                D    W   +   G+  R   G+   +E DHVF+G Y      + K  +E + DE +
Sbjct:  1023 KVKDEDKSWVAYTCPVGSWTRHGGGK-DKIELDHVFIG-YTSCPHTI-KCHEEGNSDECN 1079

Query:   358 FYTKRDDEVSF-YNCSLNKRIYGEYCEVKQCGIHFVYAQDSTDK 400
                    E S  +  +      G+Y +V +CG+  VYA+D  DK
Sbjct:  1080 -----PTEASLKFTVTGGTSENGKY-KVLKCGLSLVYAKDK-DK 1116

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 77/313 (24%), Positives = 116/313 (37%), Gaps = 89/313 (28%)

Query: 23  ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID- 81
           ELPSSI+ L+ L+ L +  C  LE + + I  LKSL  + +S C   + F +I + NI  
Sbjct: 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIST-NISW 729

Query: 82  ---GGIGIERLAS--------------------------------------CRLVLEDCS 100
                  IE   S                                       RL L D  
Sbjct: 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789

Query: 101 SLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALET------------------- 141
           SL  LPSS+     L  LEI +C     LP  + NLE+LE+                   
Sbjct: 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNI 848

Query: 142 --LIVDRTAMREVP---ESLGQLSSLKILVLSNIKR--LPEYLQLHLQ---------LPE 185
             L + RT + EVP   E    LS L +   +N++R  L      HL+         L E
Sbjct: 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908

Query: 186 NGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMK------QSFDGNIGITKSMYFPGKEI 239
               G P  +           ++L   V   ++       ++      I K +   G+E+
Sbjct: 909 ASWNGSPSEV---AMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEV 965

Query: 240 PKWFRYQSMGSSV 252
           P +F +++ G+S+
Sbjct: 966 PSYFTHRTTGASL 978

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 3   FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
           FP + S ++  L L + GI+E+P  IE  SNL  L +  C+ L+ +S +I KLK L++++
Sbjct: 841 FPDI-STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899

Query: 63  ISNC 66
            S+C
Sbjct: 900 FSDC 903

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 24/163 (14%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
           +KE+P  +   +NL+ L + DCS L  + SSI  L  L+ +++S C   E         +
Sbjct: 647 LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--------IL 697

Query: 81  DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE 140
             GI ++ L   RL L  CS L+S P       +  S   +D       P  L  LE L+
Sbjct: 698 PTGINLKSLY--RLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNL-RLENLD 750

Query: 141 TLIVDRTAMREVPESLGQLS--------SLKILVLSNIKRLPE 175
            LI+      ++ E +  L+        SL  L LS+I  L E
Sbjct: 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 47/213 (22%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSM--LESISSSIFKLKSLQSIEISNCPIFE 70
           +L+L    I ++P  I  L +   L  +D S   +ES+ S +  L +L+++++S   + +
Sbjct: 120 SLDLDNNNITDIPPLIGLLKS--NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177

Query: 71  RFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP 130
                                             LP  L    +L +L++   +   + P
Sbjct: 178 ----------------------------------LPKLLSNLSNLNNLDLSGNKISDL-P 202

Query: 131 DELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL-----HLQL 183
            E+  L ALE L +   ++ E+  SL  L +L  L LSN  ++ LPE +        L L
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262

Query: 184 PENGLEGIPEYL-RRSPRKLTLDPNELSEIVKD 215
             N +  I       + R+L L  N LS  +  
Sbjct: 263 SNNQISSISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.12
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
PLN03150	623	hypothetical protein; Provisional	98.86
PLN03150	623	hypothetical protein; Provisional	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.68
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
PRK15386	426	type III secretion protein GogB; Provisional	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.15
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.07
PRK15386	426	type III secretion protein GogB; Provisional	98.03
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.68
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.09
KOG4341	483	consensus F-box protein containing LRR [General fu	92.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.43
smart00370	26	LRR Leucine-rich repeats, outliers.	88.43
KOG4341	483	consensus F-box protein containing LRR [General fu	87.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.76
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.38

>PLN03210 Resistant to P

Probab=99.97  E-value=4.9e-30  Score=285.41  Aligned_cols=268  Identities=28%  Similarity=0.395  Sum_probs=190.1

Q ss_pred             CCCCcccC-cccEEEeecC-CCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC----
Q 014835            2 NFPSVTSC-HVYTLELVKV-GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI----   75 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l----   75 (417)
                      .+|++... +|+.|+|+++ .+.++|.+++++++|+.|++++|+.++.+|..+ ++++|+.|++++|..++.+|.+    
T Consensus       649 ~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL  727 (1153)
T PLN03210        649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI  727 (1153)
T ss_pred             cCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence            45666656 8888888874 466888888888888888888888888888765 7888888888888777666643    


Q ss_pred             CccccCCCc--cc----------------------------------ccccc-ceEEcCCCCCCCCCcccccCCCCCcEE
Q 014835           76 PSCNIDGGI--GI----------------------------------ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSL  118 (417)
Q Consensus        76 ~~l~l~g~~--~l----------------------------------~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L  118 (417)
                      ..+.++++.  .+                                  ...++ +.|+|++|..+..+|.+++++++|+.|
T Consensus       728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L  807 (1153)
T PLN03210        728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL  807 (1153)
T ss_pred             CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence            223333330  00                                  01134 667777777777788888888888888


Q ss_pred             ecccccCCccCCcccCCC---------------------CCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhh
Q 014835          119 EIIDCQYFMILPDELGNL---------------------EALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYL  177 (417)
Q Consensus       119 ~L~~n~~~~~lp~~l~~l---------------------~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l  177 (417)
                      ++++|..++.+|..+ ++                     ++|+.|+|++|.+..+|.++..+++|+.|+|++|+.+. . 
T Consensus       808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~-  884 (1153)
T PLN03210        808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-R-  884 (1153)
T ss_pred             ECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC-c-
Confidence            888877666666533 22                     35667777777788888888899999999999988776 4 


Q ss_pred             hcccCCCCccccC-CcceeecCCCc-cc-cCcCc----cc--------ccccc--ccccccCCcccC-------CceeEe
Q 014835          178 QLHLQLPENGLEG-IPEYLRRSPRK-LT-LDPNE----LS--------EIVKD--GWMKQSFDGNIG-------ITKSMY  233 (417)
Q Consensus       178 ~~~l~lp~~l~~l-~L~~L~l~~n~-L~-lp~~~----L~--------~l~~~--~~~~n~~~~~~~-------~~~~~~  233 (417)
                           +|..+..+ .|+.|++++|. |+ ++-..    ..        .+...  .-..||+.....       ....+.
T Consensus       885 -----l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~  959 (1153)
T PLN03210        885 -----VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLI  959 (1153)
T ss_pred             -----cCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEE
Confidence                 77777778 89999999987 55 22110    00        01000  011455554321       224578


Q ss_pred             cCCCCCCCCcccCCCCceEE-EEeCCCCCCCCCcccceEEEEEEecCC
Q 014835          234 FPGKEIPKWFRYQSMGSSVN-LKKRPADFLNNKILVGFAFCIVVAFPA  280 (417)
Q Consensus       234 ~~g~~iP~w~~~~~~g~~~~-i~l~~~~~~~~~~~~gf~~c~v~~~~~  280 (417)
                      +||.++|+||.|++.|++++ |.+| +.|.... +.||++|+|+++..
T Consensus       960 l~g~evp~~f~hr~~g~sl~~i~l~-~~~~~~~-~~~f~~c~v~~~~~ 1005 (1153)
T PLN03210        960 LSGEEVPSYFTHRTTGASLTNIPLL-HISPCQP-FFRFRACAVVDSES 1005 (1153)
T ss_pred             CCCccCchhccCCcccceeeeeccC-CcccCCC-ccceEEEEEEecCc
Confidence            99999999999999999998 9998 8888776 89999999997654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=7.5e-19  Score=194.42  Aligned_cols=185  Identities=19%  Similarity=0.260  Sum_probs=111.5

Q ss_pred             cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------CCCccccC
Q 014835           10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-------EIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------~l~~l~l~   81 (417)
                      +|++|+|++|+++ .+|.  +.+++|++|+|++|.+.+.+|..++++++|++|+|++|...+.+|       .+..|+++
T Consensus       119 ~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            7777777777665 4443  446666666666666666666666666666666666655443333       22223333


Q ss_pred             CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCc
Q 014835           82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REV  152 (417)
Q Consensus        82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~l  152 (417)
                      ++       ..++.+++ +.|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|+.|++++|.+ +.+
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            22       34555666 6666666666666666666666666666666666666666666666666666666666 355


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      |..+..+++|+.|+|++|. +.+.      +|..+..+ .|+.|++++|.+.
T Consensus       277 p~~l~~l~~L~~L~Ls~n~-l~~~------~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        277 PPSIFSLQKLISLDLSDNS-LSGE------IPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             chhHhhccCcCEEECcCCe-eccC------CChhHcCCCCCcEEECCCCccC
Confidence            6666666666666666665 3333      55555555 6666666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=6.7e-19  Score=194.82  Aligned_cols=187  Identities=23%  Similarity=0.250  Sum_probs=151.4

Q ss_pred             cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------CCCccccC
Q 014835           10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-------EIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------~l~~l~l~   81 (417)
                      +|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..++++++|++|+|++|...+.+|       .+..++++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            7888888888886 678778888888888888888888888888888888888888876544443       34445555


Q ss_pred             CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCc
Q 014835           82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REV  152 (417)
Q Consensus        82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~l  152 (417)
                      ++       ..+..+++ +.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|+.|++++|.+ +.+
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            44       45678888 9999999988888898899999999999999988888888888899999999999888 577


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      |..+..+++|+.|++++|. +.+.      +|..+..+ .|+.|++++|.++
T Consensus       301 p~~~~~l~~L~~L~l~~n~-~~~~------~~~~~~~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        301 PELVIQLQNLEILHLFSNN-FTGK------IPVALTSLPRLQVLQLWSNKFS  345 (968)
T ss_pred             ChhHcCCCCCcEEECCCCc-cCCc------CChhHhcCCCCCEEECcCCCCc
Confidence            8888888999999998888 4445      67777777 8888888888876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=1.4e-20  Score=158.70  Aligned_cols=163  Identities=24%  Similarity=0.358  Sum_probs=136.5

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.++.. +++.|.|++|.++.+|+.|..|.+|+.|++++| .++.+|.+++.+++|+.|+++-|              
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn--------------   89 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN--------------   89 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh--------------
Confidence            46677777 899999999999999999999999999999985 56778988999999999999874              


Q ss_pred             CCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                                          .+..+|..|+.++.|+.|||..|++.+ .+|..|..|+.|+.|+|++|.+.-+|..++++
T Consensus        90 --------------------rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l  149 (264)
T KOG0617|consen   90 --------------------RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL  149 (264)
T ss_pred             --------------------hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence                                344567778888888888888887654 57878888888888888888888888888888


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      ++|+.|.+..|..++        +|..+..+ .|+.|.+.+|+|+ +|+.
T Consensus       150 t~lqil~lrdndll~--------lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  150 TNLQILSLRDNDLLS--------LPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             cceeEEeeccCchhh--------CcHHHHHHHHHHHHhcccceeeecChh
Confidence            888888888888665        88888888 8888888888888 7775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.71  E-value=2.3e-19  Score=177.05  Aligned_cols=186  Identities=23%  Similarity=0.315  Sum_probs=121.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccc-----------------------cCccccccCCCCCCCcEEeeecC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCS-----------------------MLESISSSIFKLKSLQSIEISNC   66 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~-----------------------~~~~lp~~l~~L~~L~~L~Ls~c   66 (417)
                      .|+.||||+|+++++|..+...+++-+|+||+|+                       .+..+|+.+..|.+|++|+|++|
T Consensus       104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            5555555555555555555555555555555432                       34456666667777777777776


Q ss_pred             CC----CCcCCCCC---ccccCCC--------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC
Q 014835           67 PI----FERFTEIP---SCNIDGG--------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP  130 (417)
Q Consensus        67 ~~----l~~lp~l~---~l~l~g~--------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp  130 (417)
                      +.    +..+|.+.   .|+++++        .++..+.+ ..++++.| .+..+|+.+.++.+|+.|+|++|.+.. +.
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~ite-L~  261 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITE-LN  261 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceee-ee
Confidence            53    44555543   3677776        56777888 88999987 567789999999999999999998543 33


Q ss_pred             cccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          131 DELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       131 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ...+...+|++|+++.|+++.+|+.+.+|+.|+.|.+.+|+.--+-      ||+.|+.+ .|+.+..++|.|.
T Consensus       262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG------iPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG------IPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC------CccchhhhhhhHHHHhhccccc
Confidence            3445566777777777777777777777777777777776622112      55555555 5555555555554

>PLN03210 Resistant to P

Probab=99.69  E-value=3.1e-16  Score=175.31  Aligned_cols=137  Identities=23%  Similarity=0.402  Sum_probs=100.7

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|..+.. +|+.|+|+++.+..+|.++..+++|++|+|++|..++.+|. ++.+++|++|+|++|..+..+|       
T Consensus       603 ~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp-------  674 (1153)
T PLN03210        603 CMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP-------  674 (1153)
T ss_pred             CCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-------
Confidence            45665555 88888888888888888888888888888888877788875 7788888888888888887777       


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP  153 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp  153 (417)
                         ..+..+++ +.|++++|..++.+|..+ ++++|+.|++++|..+..+|..   .++|+.|++++|.+..+|
T Consensus       675 ---~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        675 ---SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP  741 (1153)
T ss_pred             ---hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence               46777777 888888887777777765 6777888888777666555543   234455555555544444

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.66  E-value=1.8e-17  Score=162.88  Aligned_cols=162  Identities=20%  Similarity=0.203  Sum_probs=126.6

Q ss_pred             cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835           10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~   81 (417)
                      ++++|+|++|.|+.+-.. |..|.+|.+|.|+.|.+...-+..|.+|++|+.|+|..|..       ...+|.+..+.+.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            788888888888866653 77788888888888666555556677788888888888642       2234444445554


Q ss_pred             CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc
Q 014835           82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP  153 (417)
Q Consensus        82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp  153 (417)
                      .+       ..+..+.+ ++|+|+.|++...-..++.+|++|+.|+|+.|.+...-++.....++|++|+|+.|+|++++
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence            44       56777888 99999999887777778899999999999999988888888888999999999999998887


Q ss_pred             h-hccCCCCCcEEEccCCC
Q 014835          154 E-SLGQLSSLKILVLSNIK  171 (417)
Q Consensus       154 ~-~l~~L~~L~~L~L~~n~  171 (417)
                      + ++..|+.|+.|+|+.|.
T Consensus       334 ~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             hhHHHHHHHhhhhcccccc
Confidence            4 67777777777777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=6.1e-18  Score=167.13  Aligned_cols=184  Identities=21%  Similarity=0.235  Sum_probs=122.3

Q ss_pred             cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      .|+.+.+..|+++  .||+.|..|..|..|+||.| .+..+|..+..-+++-+|+||+ +.+..+|.         .-+.
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn---------~lfi  147 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPN---------SLFI  147 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCc---------hHHH
Confidence            7899999999997  79999999999999999995 5677899899999999999999 56777775         3333


Q ss_pred             cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCC-------------------------ccCCcccCCCCCCCE
Q 014835           88 RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYF-------------------------MILPDELGNLEALET  141 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~-------------------------~~lp~~l~~l~~L~~  141 (417)
                      +|+. ..|+|++| .+..+|..+..+..|++|.|++|++.                         ..+|.++..+.+|..
T Consensus       148 nLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d  226 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD  226 (1255)
T ss_pred             hhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence            4444 44555544 23344444444444444444444321                         234555666666777


Q ss_pred             EEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhh-----------------cccCCCCccccC-CcceeecCCCccc
Q 014835          142 LIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQ-----------------LHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       142 L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~-----------------~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ++++.|.+..+|+.+.++.+|+.|+|++|+ ++ .+.                 ....+|+.+..+ .|+.|.+.+|+|+
T Consensus       227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~-it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  227 VDLSENNLPIVPECLYKLRNLRRLNLSGNK-IT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             ccccccCCCcchHHHhhhhhhheeccCcCc-ee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence            777777777777777777777777777766 33 100                 001266666666 6777777777666


Q ss_pred             ---cCcC
Q 014835          204 ---LDPN  207 (417)
Q Consensus       204 ---lp~~  207 (417)
                         ||+.
T Consensus       305 FeGiPSG  311 (1255)
T KOG0444|consen  305 FEGIPSG  311 (1255)
T ss_pred             ccCCccc
Confidence               5654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=3.9e-17  Score=137.94  Aligned_cols=143  Identities=24%  Similarity=0.405  Sum_probs=120.5

Q ss_pred             cccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCc
Q 014835            6 VTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI   84 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~   84 (417)
                      +... +|+.|++++|+|+++|.+++.+++|+.|++.-| .+..+|..|+.++.|+.|||++|+.                
T Consensus        52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl----------------  114 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNL----------------  114 (264)
T ss_pred             HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcccccc----------------
Confidence            4444 999999999999999999999999999999884 5667899999999999999999632                


Q ss_pred             cccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcE
Q 014835           85 GIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKI  164 (417)
Q Consensus        85 ~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~  164 (417)
                                      ....+|..|..++.|+.|+|++|. .+.+|..++++++|+.|.+..|.+-++|..++.++.|+.
T Consensus       115 ----------------~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen  115 ----------------NENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             ----------------ccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence                            223567778888888888898887 567788889999999999999999889999999999999


Q ss_pred             EEccCCCCChhhhhcccCCCCccccC
Q 014835          165 LVLSNIKRLPEYLQLHLQLPENGLEG  190 (417)
Q Consensus       165 L~L~~n~~l~~~l~~~l~lp~~l~~l  190 (417)
                      |.+.+|+ ++ .      +|..+..+
T Consensus       178 lhiqgnr-l~-v------lppel~~l  195 (264)
T KOG0617|consen  178 LHIQGNR-LT-V------LPPELANL  195 (264)
T ss_pred             Hhcccce-ee-e------cChhhhhh
Confidence            9999988 55 3      67666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=1.4e-15  Score=149.78  Aligned_cols=188  Identities=19%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             CCCcccC--cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835            3 FPSVTSC--HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      +|.+.+.  ||+.|+|.+|.|+++... +..++.|+.|||+.|.+...--.++..-.++++|+|++|. ++.+..     
T Consensus       117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~-----  190 (873)
T KOG4194|consen  117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLET-----  190 (873)
T ss_pred             cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cccccc-----
Confidence            4444444  445555554444444332 4444444444444432222111223333344444444421 111110     


Q ss_pred             cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc------------------------cCCcccC
Q 014835           80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM------------------------ILPDELG  134 (417)
Q Consensus        80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~------------------------~lp~~l~  134 (417)
                          ..+..+.+ ..|.|+.|++.+.-+..|.+|++|+.|+|..|.+..                        --...|.
T Consensus       191 ----~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  191 ----GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             ----ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence                44555555 556666555444333444445555555555554321                        1112233


Q ss_pred             CCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          135 NLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       135 ~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      .|.++++|+|..|++..+- .++..|+.|+.|+|++|. +...      -++..... +|+.|+|++|.|+ +|+.
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~ri------h~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRI------HIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhh-hhee------ecchhhhcccceeEeccccccccCChh
Confidence            4445555555555554433 245555666666666655 3312      12223333 6666666666665 5554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=1.9e-16  Score=149.65  Aligned_cols=192  Identities=23%  Similarity=0.281  Sum_probs=121.8

Q ss_pred             CCCcccC--cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-C----
Q 014835            3 FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-I----   75 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-l----   75 (417)
                      +|+.++.  .++.|+.++|++.++|..++.+..|+.|+.+.|. ...+|++++.+..|+.|+..+| .+..+|. +    
T Consensus        83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~  160 (565)
T KOG0472|consen   83 LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLS  160 (565)
T ss_pred             CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHH
Confidence            4554444  7777888888888888888888888888887754 3445666777777777777764 3334442 1    


Q ss_pred             --CccccCCC------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec
Q 014835           76 --PSCNIDGG------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR  146 (417)
Q Consensus        76 --~~l~l~g~------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~  146 (417)
                        ..+.+.|+      ...-+++. +.|+...| .++.+|..++.+.+|..|++..|++ ..+| .|+.+..|.+|+++.
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~  237 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGE  237 (565)
T ss_pred             HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcc
Confidence              11233333      22333666 77777766 5677787788888888888877763 3445 456666666666666


Q ss_pred             cCCCCcchhcc-CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          147 TAMREVPESLG-QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       147 n~l~~lp~~l~-~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      |.|..+|..+. ++.+|..|||..|+ ++ .      +|+.+..+ +|+.||+++|.++ +|.+
T Consensus       238 N~i~~lpae~~~~L~~l~vLDLRdNk-lk-e------~Pde~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  238 NQIEMLPAEHLKHLNSLLVLDLRDNK-LK-E------VPDEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             cHHHhhHHHHhcccccceeeeccccc-cc-c------CchHHHHhhhhhhhcccCCccccCCcc
Confidence            66666665443 56666666666666 44 3      66666666 6666666666666 5554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.48  E-value=4.2e-16  Score=147.30  Aligned_cols=171  Identities=24%  Similarity=0.286  Sum_probs=125.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .++.|+..+|+++.+|.+++++.+|..|++.+|+... +|+..-+++.|++||... +.++.+|          +.++.+
T Consensus       138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~-N~L~tlP----------~~lg~l  205 (565)
T KOG0472|consen  138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNS-NLLETLP----------PELGGL  205 (565)
T ss_pred             hhhhhhccccccccCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccch-hhhhcCC----------hhhcch
Confidence            4444444444444444444444455555554433322 222222355555555554 4555666          688999


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcchhccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVPESLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L  167 (417)
                      .+ ..|+|..|++ ..+| .|..+..|.+|+++.|. ...+|... .++++|..|||..|+++++|+.+..+++|.+||+
T Consensus       206 ~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  206 ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL  282 (565)
T ss_pred             hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence            99 9999999954 5677 78899999999999987 55666655 4899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcccCCCCccccCCcceeecCCCccc
Q 014835          168 SNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT  203 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~  203 (417)
                      ++|. ++ .      +|..++.++|+.|-+.+|++.
T Consensus       283 SNN~-is-~------Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  283 SNND-IS-S------LPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             cCCc-cc-c------CCcccccceeeehhhcCCchH
Confidence            9999 55 4      899998889999999999976

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=2.7e-12  Score=135.50  Aligned_cols=58  Identities=29%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             CCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCcC
Q 014835          137 EALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       137 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~~  207 (417)
                      .+|+.|++++|.+..+|..   .++|+.|++++|. ++ .      +|...  ..|+.|++++|.|+ +|..
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-Ls-s------IP~l~--~~L~~L~Ls~NqLt~LP~s  440 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LT-S------LPMLP--SGLLSLSVYRNQLTRLPES  440 (788)
T ss_pred             cccceEEecCCcccCCCCc---ccCCCEEEccCCc-CC-C------CCcch--hhhhhhhhccCcccccChH
Confidence            3577777777777767653   3567777887777 44 2      45311  15566677777766 6553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.37  E-value=5.3e-14  Score=133.00  Aligned_cols=202  Identities=16%  Similarity=0.203  Sum_probs=141.6

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCC----
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIP----   76 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~----   76 (417)
                      ++|.-.......|+|..|+|+.||+. |+.+++|+.|+|+.|++...-|.+|.+|++|..|-+.+++.++.+|.-.    
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            45555445778999999999999996 8999999999999999988899999999999999999988998888511    


Q ss_pred             ----ccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCc----------------
Q 014835           77 ----SCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFM----------------  127 (417)
Q Consensus        77 ----~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~----------------  127 (417)
                          .|.+..+       ..+..+++ ..|.+.+|.+ ..++. .+..+..++.+.+..|.+..                
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence                0111111       44555666 6666666633 33333 55566666666665554211                


Q ss_pred             ---------------------------------------------cCC-cccCCCCCCCEEEeeccCCCCcc-hhccCCC
Q 014835          128 ---------------------------------------------ILP-DELGNLEALETLIVDRTAMREVP-ESLGQLS  160 (417)
Q Consensus       128 ---------------------------------------------~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~  160 (417)
                                                                   ..| ..|..+++|+.|+|++|+++.+. .++..+.
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence                                                         001 13567888889999999887664 5788888


Q ss_pred             CCcEEEccCCCCChhhhhcccCCCCcc-ccC-CcceeecCCCccc-cCcCccccc
Q 014835          161 SLKILVLSNIKRLPEYLQLHLQLPENG-LEG-IPEYLRRSPRKLT-LDPNELSEI  212 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l-~~l-~L~~L~l~~n~L~-lp~~~L~~l  212 (417)
                      .++.|.|..|+ +. .      +...+ ..+ .|+.|+|.+|+|+ +-+-.++.+
T Consensus       299 ~l~eL~L~~N~-l~-~------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  299 ELQELYLTRNK-LE-F------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             hhhhhhcCcch-HH-H------HHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            88888888888 54 2      33333 344 8999999999988 444434333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.34  E-value=5e-12  Score=133.93  Aligned_cols=183  Identities=27%  Similarity=0.350  Sum_probs=94.5

Q ss_pred             CCCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-----CC
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-----IP   76 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-----l~   76 (417)
                      ++|..+..+|+.|+|++|.|+.+|..+.  .+|++|++++|++ ..+|..+.  .+|+.|+|++|+ +..+|.     +.
T Consensus       192 sLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~s~L~  265 (754)
T PRK15370        192 TIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINR-ITELPERLPSALQ  265 (754)
T ss_pred             cCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCc-cCcCChhHhCCCC
Confidence            3454333367777777777777776553  4777777777653 35665442  367777777753 344542     22


Q ss_pred             ccccCCC--cccc-cc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC
Q 014835           77 SCNIDGG--IGIE-RL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE  151 (417)
Q Consensus        77 ~l~l~g~--~~l~-~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~  151 (417)
                      .|+++++  ..+. .+ ++ +.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+  .++|+.|++++|.++.
T Consensus       266 ~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        266 SLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS  339 (754)
T ss_pred             EEECcCCccCccccccCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc
Confidence            2233222  0000 01 12 44444444322 2332221  23444444444432 233222  2456666666666666


Q ss_pred             cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCcC
Q 014835          152 VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       152 lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~~  207 (417)
                      +|..+.  ++|+.|+|++|+ +. .      +|..+. -.|+.|++++|.|+ +|+.
T Consensus       340 LP~~l~--~sL~~L~Ls~N~-L~-~------LP~~lp-~~L~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        340 LPASLP--PELQVLDVSKNQ-IT-V------LPETLP-PTITTLDVSRNALTNLPEN  385 (754)
T ss_pred             CChhhc--CcccEEECCCCC-CC-c------CChhhc-CCcCEEECCCCcCCCCCHh
Confidence            665442  567777777776 33 2      454331 16677777777766 5554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.31  E-value=2.7e-12  Score=136.00  Aligned_cols=181  Identities=20%  Similarity=0.275  Sum_probs=121.9

Q ss_pred             CCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-----CCc
Q 014835            3 FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-----IPS   77 (417)
Q Consensus         3 lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-----l~~   77 (417)
                      +|.....+|+.|+|++|.|+.+|..+.  .+|+.|+|++|.+. .+|..+.  .+|+.|++++| .+..+|.     +..
T Consensus       214 LP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~~sL~~  287 (754)
T PRK15370        214 LPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLPEELRY  287 (754)
T ss_pred             CChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccCCCCcE
Confidence            454333378888888888888887553  46788888876544 5666553  46777777764 4445543     334


Q ss_pred             cccCCC--cccc-cc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc
Q 014835           78 CNIDGG--IGIE-RL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV  152 (417)
Q Consensus        78 l~l~g~--~~l~-~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l  152 (417)
                      |.++++  ..+. .+ ++ +.|++++|.+. .+|..+  .++|+.|++++|.+.+ +|..+.  ++|+.|++++|.+..+
T Consensus       288 L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L  361 (754)
T PRK15370        288 LSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL  361 (754)
T ss_pred             EECCCCccccCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC
Confidence            555554  1111 12 24 77888888654 466544  3689999999988654 676553  6899999999999888


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCc
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~  206 (417)
                      |..+  .++|+.|+|++|. ++ .      +|..+.. .|+.|++++|+|+ +|.
T Consensus       362 P~~l--p~~L~~LdLs~N~-Lt-~------LP~~l~~-sL~~LdLs~N~L~~LP~  405 (754)
T PRK15370        362 PETL--PPTITTLDVSRNA-LT-N------LPENLPA-ALQIMQASRNNLVRLPE  405 (754)
T ss_pred             Chhh--cCCcCEEECCCCc-CC-C------CCHhHHH-HHHHHhhccCCcccCch
Confidence            8765  3689999999988 54 3      6654322 6888888888887 665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.30  E-value=8e-14  Score=143.90  Aligned_cols=183  Identities=21%  Similarity=0.261  Sum_probs=100.1

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccC----------------------ccccccCCCCCCCcEEeeecCC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSML----------------------ESISSSIFKLKSLQSIEISNCP   67 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~----------------------~~lp~~l~~L~~L~~L~Ls~c~   67 (417)
                      +|++++++.|+++.+|.+++.+.+|+.|++..|.+.                      .-+|.....+++|++|+|.. +
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N  320 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-N  320 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-c
Confidence            777888888888888877777778887777775442                      23455566688889999888 4


Q ss_pred             CCCcCCCCCc---------cccCCC-----ccc--ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC
Q 014835           68 IFERFTEIPS---------CNIDGG-----IGI--ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP  130 (417)
Q Consensus        68 ~l~~lp~l~~---------l~l~g~-----~~l--~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp  130 (417)
                      .+..+|+...         ++.+.+     ...  ..++. +.|++.+|.+....-..+.++++|+.|+|++|. +..+|
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fp  399 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFP  399 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCC
Confidence            5555554210         111100     111  11222 445555555444433344455555555555555 23333


Q ss_pred             c-ccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          131 D-ELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       131 ~-~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      + .+.++..|++|+||+|.++.+|..+..+..|++|...+|..+.        .| .+..+ .|+.+|++.|.|+
T Consensus       400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--------fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--------FP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--------ch-hhhhcCcceEEecccchhh
Confidence            3 2445555555555555555555555555555555555554222        44 44444 5555555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=6.5e-11  Score=125.10  Aligned_cols=50  Identities=20%  Similarity=0.269  Sum_probs=23.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC   66 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c   66 (417)
                      +|+.|++.+|+|+.+|..   +++|++|+|++|++. .+|..   .++|+.|++++|
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence            455555555555555531   345555555554322 34431   234555555553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=1.9e-13  Score=134.55  Aligned_cols=174  Identities=24%  Similarity=0.339  Sum_probs=136.6

Q ss_pred             ccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccc
Q 014835           11 VYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLA   90 (417)
Q Consensus        11 L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~   90 (417)
                      -...||+.|++.++|..+..+..|+.|.|..| -+..+|..+.+|..|.+|+|+. +.+..+|          ..+..++
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp----------~~lC~lp  144 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLP----------DGLCDLP  144 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCC----------hhhhcCc
Confidence            35678888888888888888888888888874 4567787788888888888888 4555566          4555666


Q ss_pred             cceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCC
Q 014835           91 SCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNI  170 (417)
Q Consensus        91 ~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n  170 (417)
                      -+.|-+++| .++.+|..++.+..|..|+.+.|. ...+|..++.+.+|+.|.+..|++..+|..+..| .|..||++.|
T Consensus       145 Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN  221 (722)
T KOG0532|consen  145 LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN  221 (722)
T ss_pred             ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC
Confidence            666667666 567788888888888888888887 4567777888888888888888888888888855 4888899888


Q ss_pred             CCChhhhhcccCCCCccccC-CcceeecCCCccccCcC
Q 014835          171 KRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLTLDPN  207 (417)
Q Consensus       171 ~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~lp~~  207 (417)
                      +...        ||..+.++ .|++|-|.+|+|+-|+.
T Consensus       222 kis~--------iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  222 KISY--------LPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             ceee--------cchhhhhhhhheeeeeccCCCCCChH
Confidence            8443        88888888 89999999888886665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=6.8e-13  Score=137.17  Aligned_cols=184  Identities=21%  Similarity=0.162  Sum_probs=134.5

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-------CCc-----
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-------IPS-----   77 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-------l~~-----   77 (417)
                      +|+.|+.++|.++++-. -..-.+|++++++.|+ ...+|.+++.+.+|+.|++..|. +..+|.       +..     
T Consensus       220 ~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             chheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence            66777777777663222 1234589999999954 55688999999999999999954 344442       111     


Q ss_pred             cccCCC-cccccccc-ceEEcCCCCCCCCCcccc--------------------------cCCCCCcEEecccccCCccC
Q 014835           78 CNIDGG-IGIERLAS-CRLVLEDCSSLQSLPSSL--------------------------CMFKSLTSLEIIDCQYFMIL  129 (417)
Q Consensus        78 l~l~g~-~~l~~l~~-~~L~L~~n~~l~~lp~~l--------------------------~~l~~L~~L~L~~n~~~~~l  129 (417)
                      +.++.. .....++. ++|+|..|.+ ..+|..+                          ..++.|+.|.+.+|.+....
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            122222 34455777 8888888754 3333221                          01345778888888887777


Q ss_pred             CcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835          130 PDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD  205 (417)
Q Consensus       130 p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp  205 (417)
                      -+.+.++.+|+.|+|++|++..+|+ .+.++..|+.|+|++|+ ++ .      +|..+..+ .|++|....|.|. +|
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~-~------Lp~tva~~~~L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LT-T------LPDTVANLGRLHTLRAHSNQLLSFP  446 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hh-h------hhHHHHhhhhhHHHhhcCCceeech
Confidence            6778899999999999999999996 67889999999999999 65 4      89888888 9999999999977 66

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=2.4e-12  Score=126.99  Aligned_cols=175  Identities=25%  Similarity=0.325  Sum_probs=144.8

Q ss_pred             CCCcccC--cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            3 FPSVTSC--HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      +|.-...  .|+.|.|..|.+..+|..+++|..|++|+|+.|. +..+|..++.|+ |+.|.+++ ++++.+|       
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp-------  159 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLP-------  159 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCC-------
Confidence            4544444  7889999999999999999999999999999965 556888888887 99999998 7888888       


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..++.+.. ..|+.+.|. +..+|..++.+.+|+.|.+..|. ...+|+.+..+ .|..||++.|++..||-.|.+|
T Consensus       160 ---~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m  233 (722)
T KOG0532|consen  160 ---EEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKM  233 (722)
T ss_pred             ---cccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCceeecchhhhhh
Confidence               57777777 889999884 56788999999999999999998 55677777744 5899999999999999999999


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCcccc---C-CcceeecCCCc
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLE---G-IPEYLRRSPRK  201 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~---l-~L~~L~l~~n~  201 (417)
                      +.|++|-|.+|+ ++ .      -|..+..   . ..++|+..-|+
T Consensus       234 ~~Lq~l~LenNP-Lq-S------PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  234 RHLQVLQLENNP-LQ-S------PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhheeeeeccCC-CC-C------ChHHHHhccceeeeeeecchhcc
Confidence            999999999999 66 2      3444322   2 67888888773

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.12  E-value=2e-11  Score=117.87  Aligned_cols=191  Identities=20%  Similarity=0.207  Sum_probs=114.6

Q ss_pred             cccEEEeecCCCc-----ccCccccCCcCcceeeccccccC------ccccccCCCCCCCcEEeeecCCCCC-------c
Q 014835           10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSML------ESISSSIFKLKSLQSIEISNCPIFE-------R   71 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~------~~lp~~l~~L~~L~~L~Ls~c~~l~-------~   71 (417)
                      +|++|+++++.++     .++..+...+.|+.|+++++...      ..++..+..+++|+.|++++|..-.       .
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            4666666666653     34444555555666666654433      1223334455566666666654321       1


Q ss_pred             C---CCCCccccCCC-----------cccccc-cc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCc----
Q 014835           72 F---TEIPSCNIDGG-----------IGIERL-AS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFM----  127 (417)
Q Consensus        72 l---p~l~~l~l~g~-----------~~l~~l-~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~----  127 (417)
                      +   +.+..++++++           ..+..+ ++ +.|++++|.+.+    .++..+..+++|++|++++|.+.+    
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            1   11444444433           234555 67 889999998763    244456677889999999988764    


Q ss_pred             cCCcccCCCCCCCEEEeeccCCC-----CcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc-cC-CcceeecCCC
Q 014835          128 ILPDELGNLEALETLIVDRTAMR-----EVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL-EG-IPEYLRRSPR  200 (417)
Q Consensus       128 ~lp~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~-~l-~L~~L~l~~n  200 (417)
                      .++..+..+++|+.|++++|.++     .++..+..+++|++|++++|. +.+...  ..+...+. .. .|+.|++++|
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~--~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA--AALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH--HHHHHHHhccCCCceEEEccCC
Confidence            23444556678999999999884     234456778889999999987 443100  00111121 23 8888999988


Q ss_pred             ccc
Q 014835          201 KLT  203 (417)
Q Consensus       201 ~L~  203 (417)
                      .++
T Consensus       261 ~i~  263 (319)
T cd00116         261 DIT  263 (319)
T ss_pred             CCC
Confidence            874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.10  E-value=1.6e-11  Score=118.47  Aligned_cols=191  Identities=17%  Similarity=0.101  Sum_probs=103.0

Q ss_pred             cccEEEeecCCCcc-------cCccccCCcCcceeeccccccCccccccCCCCCC---CcEEeeecCCCC----------
Q 014835           10 HVYTLELVKVGIKE-------LPSSIECLSNLKKLYIVDCSMLESISSSIFKLKS---LQSIEISNCPIF----------   69 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~-------lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~---L~~L~Ls~c~~l----------   69 (417)
                      +++.|+++++.+..       ++..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|...          
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            46777776665542       2334556667777777776665444444433333   777777776432          


Q ss_pred             -CcC-CCCCccccCCC-----------cccccccc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCcc---
Q 014835           70 -ERF-TEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFMI---  128 (417)
Q Consensus        70 -~~l-p~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~~---  128 (417)
                       ... +.+..++++++           ..+..+++ +.|++++|.+.+    .++..+..+++|++|++++|.+.+.   
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence             122 44455555554           12334456 677777776553    2333444556777777777765422   


Q ss_pred             -CCcccCCCCCCCEEEeeccCCCCc-chhcc-----CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCC
Q 014835          129 -LPDELGNLEALETLIVDRTAMREV-PESLG-----QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPR  200 (417)
Q Consensus       129 -lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~-----~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n  200 (417)
                       ++..+..+++|+.|++++|.++.. ...+.     ..+.|++|++++|. +++..  ...+...+... .|+.+++++|
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~--~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDG--AKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHH--HHHHHHHHhcCCCccEEECCCC
Confidence             333455566777777777766431 11111     23567777777776 32110  00022334444 6777777777


Q ss_pred             ccc
Q 014835          201 KLT  203 (417)
Q Consensus       201 ~L~  203 (417)
                      .++
T Consensus       289 ~l~  291 (319)
T cd00116         289 KFG  291 (319)
T ss_pred             CCc
Confidence            655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.06  E-value=6e-12  Score=119.25  Aligned_cols=194  Identities=17%  Similarity=0.176  Sum_probs=134.4

Q ss_pred             CCCC--cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccc-cCCCCCCCcEEeeecCCC-------C
Q 014835            2 NFPS--VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISS-SIFKLKSLQSIEISNCPI-------F   69 (417)
Q Consensus         2 ~lP~--~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~L~~L~~L~Ls~c~~-------l   69 (417)
                      .+|+  |... +|++|||++|+|+.|-+ .|..|..|..|-+.+++.++.+|. .|++|.+|+.|.+.-|..       +
T Consensus        81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al  160 (498)
T KOG4237|consen   81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL  160 (498)
T ss_pred             cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence            4665  2233 99999999999997754 699999999998888677777774 467777777777765431       1


Q ss_pred             CcCCCCCccccCCC-------cccccccc-ceEEcCC-------------------------------------------
Q 014835           70 ERFTEIPSCNIDGG-------IGIERLAS-CRLVLED-------------------------------------------   98 (417)
Q Consensus        70 ~~lp~l~~l~l~g~-------~~l~~l~~-~~L~L~~-------------------------------------------   98 (417)
                      ..+|.+..|.+-.+       .++..+.. +.+.+..                                           
T Consensus       161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~  240 (498)
T KOG4237|consen  161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED  240 (498)
T ss_pred             HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence            22232222221111       11222222 2222111                                           


Q ss_pred             ------------------CCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           99 ------------------CSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        99 ------------------n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                                        |......| ..|..+++|+.|+|++|++...-+.+|.....+++|.|..|++..+.. .+..
T Consensus       241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~  320 (498)
T KOG4237|consen  241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQG  320 (498)
T ss_pred             hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhc
Confidence                              11222223 247789999999999999999999999999999999999999976654 6788


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCcc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKL  202 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L  202 (417)
                      ++.|+.|+|.+|+ ++-.      .|-.+..+ .|.+|++-.|++
T Consensus       321 ls~L~tL~L~~N~-it~~------~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  321 LSGLKTLSLYDNQ-ITTV------APGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cccceeeeecCCe-eEEE------ecccccccceeeeeehccCcc
Confidence            9999999999999 5534      56566677 999998888774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=2.3e-10  Score=100.08  Aligned_cols=57  Identities=21%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             CCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCCCcch----hccCCCCCcEEEc
Q 014835          111 MFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMREVPE----SLGQLSSLKILVL  167 (417)
Q Consensus       111 ~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L  167 (417)
                      .+++|++|++++|++... --..+..+++|+.|++.+|.+...+.    .+..+++|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            456666666666654321 11234556666666666666643332    3455666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=4.1e-10  Score=112.33  Aligned_cols=171  Identities=26%  Similarity=0.367  Sum_probs=133.7

Q ss_pred             cccEEEeecCCCcccCccccCCc-CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLS-NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      .++.|++.+|.++++|.....+. +|+.|++++|. +..+|..+..+++|+.|++++| .+..+|          .....
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~----------~~~~~  184 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLP----------KLLSN  184 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhh----------hhhhh
Confidence            68889999999999998887775 99999999854 5566666888999999999984 455554          22335


Q ss_pred             ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEc
Q 014835           89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVL  167 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L  167 (417)
                      ++. ..|++++|+ +..+|..+..+..|++|.+++|. ....+..+.++.++..|.+.+|++..++..++.+++|+.|++
T Consensus       185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL  262 (394)
T ss_pred             hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence            666 788888884 55677766667779999999886 334555678888888888899988887888899999999999


Q ss_pred             cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ++|. +. .      ++. +... .++.|+++++.+.
T Consensus       263 s~n~-i~-~------i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         263 SNNQ-IS-S------ISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccc-cc-c------ccc-ccccCccCEEeccCcccc
Confidence            9998 44 2      554 6677 9999999999866

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=3.8e-09  Score=111.16  Aligned_cols=106  Identities=25%  Similarity=0.325  Sum_probs=85.0

Q ss_pred             CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcccccCC
Q 014835           33 NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMF  112 (417)
Q Consensus        33 ~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l  112 (417)
                      .++.|+|++|.+.+.+|..++.+++|+.|+|++|.                                 +.+.+|..++.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~---------------------------------l~g~iP~~~~~l  465 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS---------------------------------IRGNIPPSLGSI  465 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc---------------------------------ccCcCChHHhCC
Confidence            47889999998888999889999999999998863                                 345566677788


Q ss_pred             CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcchhccCC-CCCcEEEccCCC
Q 014835          113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVPESLGQL-SSLKILVLSNIK  171 (417)
Q Consensus       113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l~~L-~~L~~L~L~~n~  171 (417)
                      ++|+.|+|++|++.+.+|..++++++|+.|+|++|.+ +.+|..++.+ .++..+++.+|.
T Consensus       466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            8888888888888888888888888888888888887 5788777653 466778888877

>PLN03150 hypothetical protein; Provisional

Probab=98.84  E-value=5.1e-09  Score=110.16  Aligned_cols=103  Identities=24%  Similarity=0.312  Sum_probs=60.8

Q ss_pred             ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcchhccCCCCCcEEEccCC
Q 014835           92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVPESLGQLSSLKILVLSNI  170 (417)
Q Consensus        92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l~~L~~L~~L~L~~n  170 (417)
                      ..|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+ +.+|..++.+++|+.|+|++|
T Consensus       421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            4556666666666666666666666666666666666666666666666666666666 356666666666666666666


Q ss_pred             CCChhhhhcccCCCCccccC--CcceeecCCCc
Q 014835          171 KRLPEYLQLHLQLPENGLEG--IPEYLRRSPRK  201 (417)
Q Consensus       171 ~~l~~~l~~~l~lp~~l~~l--~L~~L~l~~n~  201 (417)
                      . +.+.      +|..+...  .+..+++.+|.
T Consensus       501 ~-l~g~------iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        501 S-LSGR------VPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             c-cccc------CChHHhhccccCceEEecCCc
Confidence            5 4444      55554432  34444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=2.7e-09  Score=106.47  Aligned_cols=157  Identities=29%  Similarity=0.417  Sum_probs=127.7

Q ss_pred             CCCCcccC---cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835            2 NFPSVTSC---HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSC   78 (417)
Q Consensus         2 ~lP~~~~~---~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l   78 (417)
                      ++|...+.   +|+.|++++|.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+.|++++ +.+..+|.    
T Consensus       130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~----  203 (394)
T COG4886         130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPP----  203 (394)
T ss_pred             cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC-CccccCch----
Confidence            45665554   5999999999999998889999999999999965 455676566899999999999 56777763    


Q ss_pred             ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhcc
Q 014835           79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLG  157 (417)
Q Consensus        79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~  157 (417)
                            .+..+.. +.|.+++|. ....+..+..+.++..|.+.+|++ ..++..++.+++|+.|++++|.+..++. ++
T Consensus       204 ------~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~  274 (394)
T COG4886         204 ------EIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-LG  274 (394)
T ss_pred             ------hhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eeccchhccccccceecccccccccccc-cc
Confidence                  3345555 788888885 345566778899999999888773 3447788999999999999999999987 99


Q ss_pred             CCCCCcEEEccCCCCC
Q 014835          158 QLSSLKILVLSNIKRL  173 (417)
Q Consensus       158 ~L~~L~~L~L~~n~~l  173 (417)
                      .+.+|+.|++++|...
T Consensus       275 ~~~~l~~L~~s~n~~~  290 (394)
T COG4886         275 SLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccCccCEEeccCcccc
Confidence            9999999999999843

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=5.1e-10  Score=102.90  Aligned_cols=124  Identities=18%  Similarity=0.278  Sum_probs=82.3

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .|++|||++|.|+.+..++.-+++++.|+++.|.+.. +.. +..|++|+.||||+| .+..+                 
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~n-La~L~~L~~LDLS~N-~Ls~~-----------------  344 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQN-LAELPQLQLLDLSGN-LLAEC-----------------  344 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceee-ehh-hhhcccceEeecccc-hhHhh-----------------
Confidence            5788888888888888888888888888888866544 333 677888888888884 22222                 


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L  167 (417)
                                      -.+-..+-+.+.|.|++|.+. .+ ..++++-+|..|++++|+|..+.  ..|++|+-|++|.|
T Consensus       345 ----------------~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  345 ----------------VGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             ----------------hhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence                            122224556666666666422 11 23556666777777777775443  35677777777777


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      .+|+
T Consensus       407 ~~NP  410 (490)
T KOG1259|consen  407 TGNP  410 (490)
T ss_pred             cCCC
Confidence            7777

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.1e-09  Score=101.50  Aligned_cols=153  Identities=18%  Similarity=0.194  Sum_probs=72.5

Q ss_pred             cccEEEeecCCCcccCc--cccCCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835           10 HVYTLELVKVGIKELPS--SIECLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG   85 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~   85 (417)
                      .|+.+.|.+..+...+.  ....|++++.|||+.|-+..-  +-.-...|++|+.|+|+.|....-...         ..
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---------~~  192 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---------NT  192 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---------cc
Confidence            56666666666654442  356677777777777433221  112234577777777776432211110         01


Q ss_pred             cccccc-ceEEcCCCCCCCC-CcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCC
Q 014835           86 IERLAS-CRLVLEDCSSLQS-LPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSS  161 (417)
Q Consensus        86 l~~l~~-~~L~L~~n~~l~~-lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~  161 (417)
                      -..++. +.|.|++|.+... +-..+..+++|+.|+|.+|............+..|++|+|++|++-..+  ..++.++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            112333 4555555544321 1112224455555555555322222222233445555555555553333  23445555


Q ss_pred             CcEEEccCCC
Q 014835          162 LKILVLSNIK  171 (417)
Q Consensus       162 L~~L~L~~n~  171 (417)
                      |+.|+++.+.
T Consensus       273 L~~Lnls~tg  282 (505)
T KOG3207|consen  273 LNQLNLSSTG  282 (505)
T ss_pred             hhhhhccccC
Confidence            5555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.66  E-value=1.1e-08  Score=89.58  Aligned_cols=117  Identities=20%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             eecCCCcccCccccCCcCcceeeccccccCccccccCC-CCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceE
Q 014835           16 LVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRL   94 (417)
Q Consensus        16 Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~-~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L   94 (417)
                      |..+.|.++|. +.+..+++.|+|++|.+.. +. .++ .+.+|+.|+|++| .++.++                     
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N-~I~~l~---------------------   58 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNN-QITKLE---------------------   58 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS---S--T---------------------
T ss_pred             ccccccccccc-ccccccccccccccccccc-cc-chhhhhcCCCEEECCCC-CCcccc---------------------
Confidence            33445555555 4455567777777765443 32 244 4677777777774 222221                     


Q ss_pred             EcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCC
Q 014835           95 VLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIK  171 (417)
Q Consensus        95 ~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~  171 (417)
                                   .+..++.|+.|++++|.+.. +.+.+ ..+++|++|++++|+|.++.  ..+..+++|+.|+|.+|+
T Consensus        59 -------------~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   59 -------------GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -------------T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             -------------CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence                         23457778888888887554 33333 35788888888888885443  356678888888888888

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.1e-08  Score=98.57  Aligned_cols=152  Identities=19%  Similarity=0.245  Sum_probs=92.2

Q ss_pred             cccEEEeecCCCc---ccCccccCCcCcceeeccccccCcccccc-CCCCCCCcEEeeecCCCCCc-CCCCCccccCCCc
Q 014835           10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSMLESISSS-IFKLKSLQSIEISNCPIFER-FTEIPSCNIDGGI   84 (417)
Q Consensus        10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~L~~L~~L~Ls~c~~l~~-lp~l~~l~l~g~~   84 (417)
                      +++.|||++|-+.   .+-.-...|++|+.|+|+.|.+.--..+. -..+++|+.|.|+.|..... +-          .
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~----------~  216 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ----------W  216 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH----------H
Confidence            8999999999887   33344678999999999998765432221 13578999999999954210 00          1


Q ss_pred             ccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC-CcccCCCCCCCEEEeeccCCCCc--chh-----
Q 014835           85 GIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL-PDELGNLEALETLIVDRTAMREV--PES-----  155 (417)
Q Consensus        85 ~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~n~l~~l--p~~-----  155 (417)
                      .+..+++ +.|+|.+|.....-......+..|+.|+|++|++...- -...+.++.|+.|+++.|.+.++  |+.     
T Consensus       217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k  296 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK  296 (505)
T ss_pred             HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh
Confidence            1223444 55666666432222222334566777777777643321 12356677777777777776432  332     


Q ss_pred             ccCCCCCcEEEccCCC
Q 014835          156 LGQLSSLKILVLSNIK  171 (417)
Q Consensus       156 l~~L~~L~~L~L~~n~  171 (417)
                      ...+++|++|++..|+
T Consensus       297 t~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  297 THTFPKLEYLNISENN  312 (505)
T ss_pred             hcccccceeeecccCc
Confidence            2446677777777776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=5.4e-08  Score=69.91  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=52.0

Q ss_pred             cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCC
Q 014835           10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCP   67 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~   67 (417)
                      +|++|++++|+|+.+|. .+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            58999999999999997 48899999999999988876667789999999999999974

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=5.6e-08  Score=105.06  Aligned_cols=155  Identities=26%  Similarity=0.313  Sum_probs=102.7

Q ss_pred             CCCcccC-cccEEEeecCCCcccCccccCCcCcceeecccccc-Cccccc-cCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835            3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSM-LESISS-SIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus         3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~-~~~lp~-~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      .|..... .++.+.+-+|.+..++....+ ++|++|-+.+|.. ...++. .|..++.|++|||++|..+..+|      
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP------  588 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP------  588 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC------
Confidence            3444444 667777777777777665433 3677777777652 333433 35567888888888877777777      


Q ss_pred             cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC---Ccchh
Q 014835           80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR---EVPES  155 (417)
Q Consensus        80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~  155 (417)
                          ..++.|-+ ++|++++.. +..+|..+.+|+.|.+|++..+.....+|..+..|.+|++|.+......   ..-..
T Consensus       589 ----~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e  663 (889)
T KOG4658|consen  589 ----SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE  663 (889)
T ss_pred             ----hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh
Confidence                57777777 788887764 4478888888888888888877766666666667888888887665421   11223


Q ss_pred             ccCCCCCcEEEccC
Q 014835          156 LGQLSSLKILVLSN  169 (417)
Q Consensus       156 l~~L~~L~~L~L~~  169 (417)
                      +..|.+|+.+....
T Consensus       664 l~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  664 LENLEHLENLSITI  677 (889)
T ss_pred             hhcccchhhheeec
Confidence            45555666555533

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=3.4e-08  Score=91.09  Aligned_cols=32  Identities=9%  Similarity=0.164  Sum_probs=18.5

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVD   41 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~   41 (417)
                      +|..+.++...-..|-.-...-+.|+++...+
T Consensus       215 ~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~  246 (490)
T KOG1259|consen  215 NLKTLKFSALSTENIVDIELLKPTLQTICVHN  246 (490)
T ss_pred             hhheeeeeccchhheeceeecCchhheeeeec
Confidence            66677777655444433233346777777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.46  E-value=5.9e-07  Score=88.09  Aligned_cols=59  Identities=22%  Similarity=0.465  Sum_probs=33.8

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT   73 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp   73 (417)
                      +++.|+++++.|+.+|. +  ..+|+.|.+++|..+..+|..+  .++|++|++++|..+..+|
T Consensus        53 ~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             CCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            56666666666666662 1  2346666666666666666544  2456666666665554444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=2.3e-07  Score=66.59  Aligned_cols=59  Identities=32%  Similarity=0.487  Sum_probs=45.9

Q ss_pred             CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCC
Q 014835          113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIK  171 (417)
Q Consensus       113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~  171 (417)
                      ++|++|++++|++....+..|..+++|++|++++|.+..++. .+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            467888888887666555677888888888888888877764 67888888888888876

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=4.9e-07  Score=97.89  Aligned_cols=174  Identities=25%  Similarity=0.248  Sum_probs=115.3

Q ss_pred             cccEEEeecCC--CcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835           10 HVYTLELVKVG--IKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI   86 (417)
Q Consensus        10 ~L~~L~Ls~n~--l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l   86 (417)
                      .|++|-+.+|.  +..++.. |..++.|++|||++|...+.+|..+++|-+|++|++++ ..+..+|          ..+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP----------~~l  614 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLP----------SGL  614 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccc----------hHH
Confidence            68888888876  6666665 66788889999988888888888888888888888888 5566777          688


Q ss_pred             ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccC--CccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCc
Q 014835           87 ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLK  163 (417)
Q Consensus        87 ~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~--~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~  163 (417)
                      .+|+. .+|++..+..+..+|..+..|++|++|.+.....  ....-..+.++.+|+.|....... .+-..+..++.|.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR  693 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence            88888 8888888877777777777788888888876431  122223345555566555543333 1112222233332


Q ss_pred             ----EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          164 ----ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       164 ----~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                          .+.+.++...  .      .+..+..+ .|+.|.+.+|...
T Consensus       694 ~~~~~l~~~~~~~~--~------~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKR--T------LISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HHhHhhhhcccccc--e------eecccccccCcceEEEEcCCCc
Confidence                3333333311  2      44466667 8888888888754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=4e-08  Score=90.57  Aligned_cols=175  Identities=19%  Similarity=0.178  Sum_probs=110.7

Q ss_pred             cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      .|+.|||+...|+  .+..-+..+.+|+.|.|.++.+...+-..+.+-.+|+.|+|+.|+.++....-        .-+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--------ll~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--------LLLS  257 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--------HHHH
Confidence            5999999999887  56666788999999999998888877777888899999999999876654310        1234


Q ss_pred             cccc-ceEEcCCCCCCCCCcc-ccc-CCCCCcEEecccccCC---ccCCcccCCCCCCCEEEeeccCC-C-CcchhccCC
Q 014835           88 RLAS-CRLVLEDCSSLQSLPS-SLC-MFKSLTSLEIIDCQYF---MILPDELGNLEALETLIVDRTAM-R-EVPESLGQL  159 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~~lp~-~l~-~l~~L~~L~L~~n~~~---~~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~l~~L  159 (417)
                      +++. ..|+|+-|...+..-. .+. --.+|..|+|+|+...   ..+.-....+++|.+|||++|.. + .+-..+.++
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf  337 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF  337 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence            4555 5666666654442211 111 1245667777776421   11111234567777777777653 2 333456677


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCcc---ccC-CcceeecCCCc
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENG---LEG-IPEYLRRSPRK  201 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l---~~l-~L~~L~l~~n~  201 (417)
                      +.|++|.++.|..+         +|..+   ... .|.+|++.+|-
T Consensus       338 ~~L~~lSlsRCY~i---------~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDI---------IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             chheeeehhhhcCC---------ChHHeeeeccCcceEEEEecccc
Confidence            77777777777632         33332   223 66777766653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.15  E-value=2.1e-07  Score=87.63  Aligned_cols=188  Identities=16%  Similarity=0.204  Sum_probs=114.2

Q ss_pred             ccC-cccEEEeecCCCc--ccCc---cccCCcCcceeeccccccCcc-------------ccccCCCCCCCcEEeeecCC
Q 014835            7 TSC-HVYTLELVKVGIK--ELPS---SIECLSNLKKLYIVDCSMLES-------------ISSSIFKLKSLQSIEISNCP   67 (417)
Q Consensus         7 ~~~-~L~~L~Ls~n~l~--~lp~---~i~~L~~L~~L~Ls~n~~~~~-------------lp~~l~~L~~L~~L~Ls~c~   67 (417)
                      .+. +|++||||.|.+.  .++.   -+..+..|+.|.|.+|.+...             .-..+..-+.|+++...+| 
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-  167 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-  167 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence            344 6777777777665  2222   245567777777776643321             1112334456777766663 


Q ss_pred             CCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCC----CcccccCCCCCcEEecccccCCc----cCCcccCCCCC
Q 014835           68 IFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQS----LPSSLCMFKSLTSLEIIDCQYFM----ILPDELGNLEA  138 (417)
Q Consensus        68 ~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~----lp~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~  138 (417)
                      .+...+...   +  ...+...+. +.+.+..|.+...    +-..+..+++|+.|||.+|.+..    .+...+..+++
T Consensus       168 rlen~ga~~---~--A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  168 RLENGGATA---L--AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             ccccccHHH---H--HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            222222100   0  034455566 7788887766432    23456788999999999998754    34455677889


Q ss_pred             CCEEEeeccCCCC-----cchhc-cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          139 LETLIVDRTAMRE-----VPESL-GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       139 L~~L~L~~n~l~~-----lp~~l-~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      |++|++++|.+..     +-..+ ...++|+.|.|.+|..-.+.   ...+..++... .|..|++++|.+.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da---~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA---ALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH---HHHHHHHHhcchhhHHhcCCccccc
Confidence            9999999998832     22222 34789999999999832211   11123344556 8999999999973

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.07  E-value=5.9e-07  Score=90.26  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeec
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN   65 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~   65 (417)
                      +|+.|++.+|.|+.+...+..+++|++|+|++|.+ +.+.. +..++.|+.|++++
T Consensus        96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~-l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEG-LSTLTLLKELNLSG  149 (414)
T ss_pred             ceeeeeccccchhhcccchhhhhcchheecccccc-ccccc-hhhccchhhheecc
Confidence            44455555555544443344455555555555322 22222 33444455555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.03  E-value=1.3e-05  Score=78.77  Aligned_cols=134  Identities=26%  Similarity=0.367  Sum_probs=80.7

Q ss_pred             ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCc
Q 014835           28 IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLP  106 (417)
Q Consensus        28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp  106 (417)
                      +..+.+++.|++++| .+..+|. +  ..+|+.|.+++|+.+..+|.          .+  .++ +.|.+++|..+..+|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~----------~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPG----------SI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCc----------hh--hhhhhheEccCcccccccc
Confidence            345688999999988 5667773 2  34699999999988887773          22  134 788888886666666


Q ss_pred             ccccCCCCCcEEecccccC--CccCCcccCCCCCCCEEEeeccC-C--CCcchhccCCCCCcEEEccCCCCChhhhhccc
Q 014835          107 SSLCMFKSLTSLEIIDCQY--FMILPDELGNLEALETLIVDRTA-M--REVPESLGQLSSLKILVLSNIKRLPEYLQLHL  181 (417)
Q Consensus       107 ~~l~~l~~L~~L~L~~n~~--~~~lp~~l~~l~~L~~L~L~~n~-l--~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l  181 (417)
                      .      +|+.|++.++..  .+.+|.      +|+.|.+.+++ .  ..+|.  .-.++|++|++++|..+.       
T Consensus       112 ~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-------  170 (426)
T PRK15386        112 E------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-------  170 (426)
T ss_pred             c------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCccc-------
Confidence            4      356666654432  334443      45566654322 1  11221  112578888888877443       


Q ss_pred             CCCCccccCCcceeecCCC
Q 014835          182 QLPENGLEGIPEYLRRSPR  200 (417)
Q Consensus       182 ~lp~~l~~l~L~~L~l~~n  200 (417)
                       +|..+. .+|+.|.++.+
T Consensus       171 -LP~~LP-~SLk~L~ls~n  187 (426)
T PRK15386        171 -LPEKLP-ESLQSITLHIE  187 (426)
T ss_pred             -Cccccc-ccCcEEEeccc
Confidence             443221 26777777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.93  E-value=1e-06  Score=88.60  Aligned_cols=126  Identities=24%  Similarity=0.256  Sum_probs=68.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .++.+++..|.++.+-..+..+++|..|++.+|.+.+ +...+..+++|++|++++| .++.+.           .+..+
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N-~I~~i~-----------~l~~l  139 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFN-KITKLE-----------GLSTL  139 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccc-cccccc-----------chhhc
Confidence            4556666667776644446777788888887755443 3333566778888888874 333332           33444


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCCC
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMRE  151 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~~  151 (417)
                      +. +.|++.+|.+...  ..+..++.|+.+++++|.+...-+ . +..+.+|+.+.+.+|.+..
T Consensus       140 ~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            44 5555555543321  122235555666666655433222 1 3445555555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.86  E-value=1.5e-06  Score=81.98  Aligned_cols=183  Identities=13%  Similarity=0.108  Sum_probs=111.6

Q ss_pred             cccEEEeecCCCc-----ccCccccCCcCcceeeccccccCcc----ccc-------cCCCCCCCcEEeeecCCCCCcCC
Q 014835           10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSMLES----ISS-------SIFKLKSLQSIEISNCPIFERFT   73 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~~~----lp~-------~l~~L~~L~~L~Ls~c~~l~~lp   73 (417)
                      .+++|+|++|.+.     .+-..+.+.++|+.-++++ -+++.    +|.       .+...++|++|+||.|-.-...+
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            7899999999886     3555577788999999987 45542    333       34456789999999963221111


Q ss_pred             -CCCccccCCCcccccccc-ceEEcCCCCCCCCC-------------cccccCCCCCcEEecccccCCcc----CCcccC
Q 014835           74 -EIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSL-------------PSSLCMFKSLTSLEIIDCQYFMI----LPDELG  134 (417)
Q Consensus        74 -~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~l-------------p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~  134 (417)
                       .+.       .-+..... +.|.|.+|.+-..-             ..-+..-+.|+.+..+.|.+...    +...+.
T Consensus       110 ~~l~-------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  110 RGLE-------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             HHHH-------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence             110       23344555 77777777542211             11233456788888877764321    223455


Q ss_pred             CCCCCCEEEeeccCCC-----CcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          135 NLEALETLIVDRTAMR-----EVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       135 ~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ..+.|+.+.+..|.|.     -+-..+..+++|+.|||..|. ++...  ...+...+..+ +|+.|++++|.++
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~eg--s~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEG--SVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHH--HHHHHHHhcccchheeecccccccc
Confidence            5678888888888773     123456778888888888887 33110  11123334445 6888888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.6e-05  Score=52.78  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=25.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSML   45 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~   45 (417)
                      +|++|++++|+|+++|+.+++|++|++|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            477888888888888777788888888888876543

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=6.6e-06  Score=76.19  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             cccEEEeecCCCc---ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCC--------CCCcCCCCCcc
Q 014835           10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCP--------IFERFTEIPSC   78 (417)
Q Consensus        10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~--------~l~~lp~l~~l   78 (417)
                      +++.|||.+|.|+   +|-.-+.+|+.|++|+|+.|.+...+-..=..+.+|++|.|.|..        .+..+|.+.++
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            7889999999987   555557789999999999876654432210256788999888742        12333333333


Q ss_pred             ccCCC---------cccccccc--ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEe
Q 014835           79 NIDGG---------IGIERLAS--CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIV  144 (417)
Q Consensus        79 ~l~g~---------~~l~~l~~--~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L  144 (417)
                      +++.+         ..+.....  .+|.+..|....  ..-.--..++++..+.+..|++-. .-.......+.+..|+|
T Consensus       152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL  231 (418)
T ss_pred             hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence            33322         01111111  111111110000  000000123455555555554322 11223445666777788


Q ss_pred             eccCCCCcc--hhccCCCCCcEEEccCCC
Q 014835          145 DRTAMREVP--ESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       145 ~~n~l~~lp--~~l~~L~~L~~L~L~~n~  171 (417)
                      +.|+|.+..  +.+..+++|..|.+++++
T Consensus       232 ~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  232 GANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             cccccccHHHHHHHcCCchhheeeccCCc
Confidence            888875543  356778888888888877

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.77  E-value=5.5e-07  Score=91.97  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=80.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .|...+.+.|.+..+..++.-++.|+.|||+.|++...-  .+..+++|++|||++ +.+..+|.+.             
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsy-N~L~~vp~l~-------------  228 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSY-NCLRHVPQLS-------------  228 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhccccccccccc-chhccccccc-------------
Confidence            567777888888888888888888888888887665543  467788888888888 4455444311             


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L  167 (417)
                                         ...+ .|+.|.+++|.+.. + ..+.++.+|+.||+++|-+....  .-+..|..|+.|.|
T Consensus       229 -------------------~~gc-~L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L  286 (1096)
T KOG1859|consen  229 -------------------MVGC-KLQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL  286 (1096)
T ss_pred             -------------------hhhh-hheeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence                               0112 26667777665332 1 23566777777777777663221  23456677777777


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      .+|+
T Consensus       287 eGNP  290 (1096)
T KOG1859|consen  287 EGNP  290 (1096)
T ss_pred             cCCc
Confidence            7777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=4e-05  Score=50.93  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=23.2

Q ss_pred             CCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835          137 EALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       137 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      ++|++|++++|+|+++|..+++|++|+.|++++|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            35677777777777776667777777777777776

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=4.3e-06  Score=77.38  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=94.2

Q ss_pred             cccEEEeecCCCc-ccCccccCCcCcceeeccccccCcccc--ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835           10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESIS--SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI   86 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp--~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l   86 (417)
                      .|+.|.|+++++. .|-..|..-.+|+.|+|+.|+-.++..  --+.+++.|..|+|++|-..+..-.         ..+
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt---------v~V  281 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT---------VAV  281 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh---------HHH
Confidence            7899999999987 666678888999999999998666432  2357889999999999965433210         111


Q ss_pred             cccc-c-ceEEcCCCCCCC---CCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCC--CcchhccC
Q 014835           87 ERLA-S-CRLVLEDCSSLQ---SLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMR--EVPESLGQ  158 (417)
Q Consensus        87 ~~l~-~-~~L~L~~n~~l~---~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~  158 (417)
                      .... + ..|+|+|+...-   .+..-...+++|.+|||++|..+. .....+-+++.|++|.++.|..-  +.--.+..
T Consensus       282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s  361 (419)
T KOG2120|consen  282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS  361 (419)
T ss_pred             hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc
Confidence            1111 1 445555543211   111122356777777777765332 22234556777777777777531  11113566


Q ss_pred             CCCCcEEEccCCC
Q 014835          159 LSSLKILVLSNIK  171 (417)
Q Consensus       159 L~~L~~L~L~~n~  171 (417)
                      .++|.+|++.++-
T Consensus       362 ~psl~yLdv~g~v  374 (419)
T KOG2120|consen  362 KPSLVYLDVFGCV  374 (419)
T ss_pred             CcceEEEEecccc
Confidence            7778888876653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.52  E-value=6.3e-06  Score=67.99  Aligned_cols=105  Identities=19%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             eEEcCCCCCCCCCcc---cccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           93 RLVLEDCSSLQSLPS---SLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        93 ~L~L~~n~~l~~lp~---~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      .++|++|.+ ..++.   .+.....|...+|++|.+ ..+|..| ...+.++.|++++|.|.++|..+..++.|+.|+++
T Consensus        31 ~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   31 FLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hcccccchh-hHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            455555533 22333   334556677778988874 4555554 34568899999999999999999999999999999


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      .|+...        .|..+..+ ++..|+..+|.+. +|..
T Consensus       109 ~N~l~~--------~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FNPLNA--------EPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cCcccc--------chHHHHHHHhHHHhcCCCCccccCcHH
Confidence            998443        67777778 8888888888754 5544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.39  E-value=5.9e-06  Score=84.65  Aligned_cols=19  Identities=37%  Similarity=0.751  Sum_probs=11.2

Q ss_pred             cccCCCCCCCcEEeeecCC
Q 014835           49 SSSIFKLKSLQSIEISNCP   67 (417)
Q Consensus        49 p~~l~~L~~L~~L~Ls~c~   67 (417)
                      |-.|..+.+|++|.|.+|+
T Consensus       102 pi~ifpF~sLr~LElrg~~  120 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCD  120 (1096)
T ss_pred             CceeccccceeeEEecCcc
Confidence            3345556666666666664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.37  E-value=9.6e-06  Score=66.92  Aligned_cols=52  Identities=21%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             CCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh
Q 014835          103 QSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES  155 (417)
Q Consensus       103 ~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~  155 (417)
                      ..+|..+..++.|+.|+++.|++. ..|..+..+.+|..|+..+|.+.++|..
T Consensus        90 sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen   90 SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            345555555666666666665532 3344444455566666666665555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.25  E-value=0.00058  Score=60.18  Aligned_cols=59  Identities=22%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCCCCcch----hccCCCCCcEEEccCC
Q 014835          111 MFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAMREVPE----SLGQLSSLKILVLSNI  170 (417)
Q Consensus       111 ~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L~~n  170 (417)
                      .+++|+.|.|.+|++..  .+ +.+..++.|++|.+-+|.+..-+.    -+..+++|+.||+.+-
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            34556666666665422  11 124455566666666666543322    3455666666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.18  E-value=0.00017  Score=76.45  Aligned_cols=128  Identities=20%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             cccEEEeecCCC-c-ccCcccc-CCcCcceeeccccccCc-cccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835           10 HVYTLELVKVGI-K-ELPSSIE-CLSNLKKLYIVDCSMLE-SISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG   85 (417)
Q Consensus        10 ~L~~L~Ls~n~l-~-~lp~~i~-~L~~L~~L~Ls~n~~~~-~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~   85 (417)
                      +|+.|+++|... . .-|..++ .||.|+.|.+++=.+.. .+-.-..++++|..||+|+++ ++.+           ..
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-----------~G  190 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-----------SG  190 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-----------HH
Confidence            566666666332 1 2222343 36666666666522211 112223456666666666632 2211           24


Q ss_pred             cccccc-ceEEcCCCCCCC-CCcccccCCCCCcEEecccccCCccC--C----cccCCCCCCCEEEeeccCC
Q 014835           86 IERLAS-CRLVLEDCSSLQ-SLPSSLCMFKSLTSLEIIDCQYFMIL--P----DELGNLEALETLIVDRTAM  149 (417)
Q Consensus        86 l~~l~~-~~L~L~~n~~l~-~lp~~l~~l~~L~~L~L~~n~~~~~l--p----~~l~~l~~L~~L~L~~n~l  149 (417)
                      +++|++ +.|.+.+-.+.. .--..+.+|++|+.||+|........  .    +.-..+++|+.||.|++.+
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            455555 555554432222 11123456666666666654432211  0    1112355666666666555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.16  E-value=0.00059  Score=60.15  Aligned_cols=38  Identities=18%  Similarity=0.068  Sum_probs=23.2

Q ss_pred             cCCCCCcEEecccccCCccCC---cccCCCCCCCEEEeecc
Q 014835          110 CMFKSLTSLEIIDCQYFMILP---DELGNLEALETLIVDRT  147 (417)
Q Consensus       110 ~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~n  147 (417)
                      ..+++|++|.+-+|+....--   -.+..+++|+.||..+-
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            356777777777776443211   12556778888877653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.74  E-value=0.00048  Score=73.14  Aligned_cols=82  Identities=20%  Similarity=0.166  Sum_probs=41.5

Q ss_pred             cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcch-------hccC
Q 014835           88 RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVPE-------SLGQ  158 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp~-------~l~~  158 (417)
                      ++++ ..||++++.+.. + ..++.|++|+.|.+.+-.+.. ..-..+.++++|+.||+|.......+.       .-..
T Consensus       171 sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             ccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            4455 566666654322 2 455566666666665533221 111234556666666666654422221       1123


Q ss_pred             CCCCcEEEccCCC
Q 014835          159 LSSLKILVLSNIK  171 (417)
Q Consensus       159 L~~L~~L~L~~n~  171 (417)
                      |++|+.||.++..
T Consensus       249 LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  249 LPELRFLDCSGTD  261 (699)
T ss_pred             CccccEEecCCcc
Confidence            6666666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.23  E-value=0.0046  Score=57.09  Aligned_cols=63  Identities=21%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             cccEEEeecCCCc-----ccCccccCCcCcceeeccccccCcc----cc-------ccCCCCCCCcEEeeecCCCCCcCC
Q 014835           10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSMLES----IS-------SSIFKLKSLQSIEISNCPIFERFT   73 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~~~----lp-------~~l~~L~~L~~L~Ls~c~~l~~lp   73 (417)
                      .++.++||+|-|.     .+-..|.+-.+|+..++++ -+++.    +|       ..+-++++|+..+||.|-.-..+|
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5677788887775     2444466667777777776 34432    12       224466777777777764433333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.15  E-value=0.0019  Score=35.89  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=11.1

Q ss_pred             cccEEEeecCCCcccCcccc
Q 014835           10 HVYTLELVKVGIKELPSSIE   29 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~   29 (417)
                      +|++|+|++|+|+++|++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35556666665555555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.94  E-value=0.0042  Score=56.92  Aligned_cols=112  Identities=20%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             CCcCcceeeccccccCccccccCCCCCCCcEEeeecC--CCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCC--C
Q 014835           30 CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC--PIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQ--S  104 (417)
Q Consensus        30 ~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c--~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~--~  104 (417)
                      .+..|+.|.+.++..++ +- .+-.|++|+.|.++.|  .....++          .....+++ +++++++|++.-  .
T Consensus        41 ~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~----------vl~e~~P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLE----------VLAEKAPNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             cccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccce----------ehhhhCCceeEEeecCCccccccc
Confidence            34445555554433222 11 1334556666666655  2222222          12233355 566666665432  1


Q ss_pred             CcccccCCCCCcEEecccccCCccCC---cccCCCCCCCEEEeeccCCCCcch
Q 014835          105 LPSSLCMFKSLTSLEIIDCQYFMILP---DELGNLEALETLIVDRTAMREVPE  154 (417)
Q Consensus       105 lp~~l~~l~~L~~L~L~~n~~~~~lp---~~l~~l~~L~~L~L~~n~l~~lp~  154 (417)
                      ++ .+..+.+|..|++..|.....--   ..+.-+++|+.|+-....-.+.|.
T Consensus       109 l~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~  160 (260)
T KOG2739|consen  109 LR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE  160 (260)
T ss_pred             cc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence            11 23466778888888887544111   124456777777644433334443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.80  E-value=0.0064  Score=55.75  Aligned_cols=61  Identities=23%  Similarity=0.214  Sum_probs=42.0

Q ss_pred             CCCCCcEEecccc--cCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCC
Q 014835          111 MFKSLTSLEIIDC--QYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       111 ~l~~L~~L~L~~n--~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~  171 (417)
                      .|++|+.|.++.|  ...+.++.....+++|++|++++|++..+-  ..+..+.+|..|++.+|.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            5678888888888  555566655666688888888888775321  134566677777777776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.42  E-value=0.059  Score=44.17  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=12.7

Q ss_pred             ccCCcCcceeeccccccCccccccCCCCCCCcEEeeec
Q 014835           28 IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN   65 (417)
Q Consensus        28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~   65 (417)
                      +..+++|+.+.+.. .....-...+.++++|+.+.+..
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            44444555555543 22211123344444555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.01  Score=55.52  Aligned_cols=80  Identities=19%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC--CCcchhccCCCCCcEEEc
Q 014835           92 CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM--REVPESLGQLSSLKILVL  167 (417)
Q Consensus        92 ~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~l~~L~~L~~L~L  167 (417)
                      +.++|.+|.+..  .+...+.+|+.|+.|+|+.|++...+-..-....+|+.|.|.++.+  +.....+..++.++.|.+
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm  153 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM  153 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence            566777665533  2333455788888888888876543322113456788888888777  455556677777888887


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      +.|.
T Consensus       154 S~N~  157 (418)
T KOG2982|consen  154 SDNS  157 (418)
T ss_pred             ccch
Confidence            7774

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.81  E-value=0.01  Score=32.91  Aligned_cols=17  Identities=29%  Similarity=0.458  Sum_probs=7.8

Q ss_pred             CCEEEeeccCCCCcchh
Q 014835          139 LETLIVDRTAMREVPES  155 (417)
Q Consensus       139 L~~L~L~~n~l~~lp~~  155 (417)
                      |++|++++|+++.+|.+
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.29  E-value=0.1  Score=42.73  Aligned_cols=53  Identities=25%  Similarity=0.371  Sum_probs=32.9

Q ss_pred             cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeec
Q 014835           10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISN   65 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~   65 (417)
                      +|+.+.+.. .++.|+.. +..+++|+.+.+.. . +..++ ..+.++++|+.+.+.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             CCCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc
Confidence            899999884 67888875 78888999999987 3 44444 4577787899999864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.17  E-value=0.06  Score=27.74  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=5.8

Q ss_pred             CCCEEEeeccCCCCcc
Q 014835          138 ALETLIVDRTAMREVP  153 (417)
Q Consensus       138 ~L~~L~L~~n~l~~lp  153 (417)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3445555555544443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.09  E-value=0.048  Score=28.10  Aligned_cols=16  Identities=31%  Similarity=0.536  Sum_probs=8.0

Q ss_pred             cccEEEeecCCCcccC
Q 014835           10 HVYTLELVKVGIKELP   25 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp   25 (417)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4666777777666655

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.22  E-value=0.047  Score=53.39  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             CCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCC-CCc-----chhccCCCCCcEEEccCCCCChhhhhcccC
Q 014835          111 MFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAM-REV-----PESLGQLSSLKILVLSNIKRLPEYLQLHLQ  182 (417)
Q Consensus       111 ~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l-~~l-----p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~  182 (417)
                      +.+.|+.+++.+|....  .+...-.+++.|+.|.++++.. ++.     ...-..+..|..|.|++++.+++.      
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~------  417 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA------  417 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH------
Confidence            45566666666654321  1222234566666666666544 211     122244566777777777755543      


Q ss_pred             CCCccccC-CcceeecCCCc
Q 014835          183 LPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       183 lp~~l~~l-~L~~L~l~~n~  201 (417)
                      .-..+... .|+.+++-+|.
T Consensus       418 ~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  418 TLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             HHHHHhhCcccceeeeechh
Confidence            22223333 66666666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.98  E-value=0.0066  Score=56.24  Aligned_cols=54  Identities=13%  Similarity=0.203  Sum_probs=32.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC   66 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c   66 (417)
                      +++.|+.-|+.|..|.- ...++.|++|.|+-|++.. +.. +..+++|+.|+|..|
T Consensus        20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIss-L~p-l~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISS-LAP-LQRCTRLKELYLRKN   73 (388)
T ss_pred             HhhhhcccCCCccHHHH-HHhcccceeEEeecccccc-chh-HHHHHHHHHHHHHhc
Confidence            45666777766665532 4456677777777654433 322 556667777777663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.28  E-value=0.053  Score=50.29  Aligned_cols=170  Identities=17%  Similarity=0.073  Sum_probs=102.0

Q ss_pred             cccEEEeecC--CC-c-ccCcc-------ccCCcCcceeeccccccCccccc----cCCCCCCCcEEeeecCCCCCcCCC
Q 014835           10 HVYTLELVKV--GI-K-ELPSS-------IECLSNLKKLYIVDCSMLESISS----SIFKLKSLQSIEISNCPIFERFTE   74 (417)
Q Consensus        10 ~L~~L~Ls~n--~l-~-~lp~~-------i~~L~~L~~L~Ls~n~~~~~lp~----~l~~L~~L~~L~Ls~c~~l~~lp~   74 (417)
                      +|+..+++.-  +. . ++|++       +-.+++|+..+||+|.+....|.    -++.-+.|++|.|++| .++.+..
T Consensus        59 ~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG  137 (388)
T COG5238          59 NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAG  137 (388)
T ss_pred             ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccch
Confidence            7777777762  22 2 45543       45789999999999987766654    3567789999999985 4443321


Q ss_pred             CCccccCCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-----cccCCCCCCCEEEeeccCC
Q 014835           75 IPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-----DELGNLEALETLIVDRTAM  149 (417)
Q Consensus        75 l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-----~~l~~l~~L~~L~L~~n~l  149 (417)
                               ..|+   +.-..|..|+.       ...-+.|+......|++.. .|     ..+..-..|+++.+..|.|
T Consensus       138 ---------~rig---kal~~la~nKK-------aa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgI  197 (388)
T COG5238         138 ---------GRIG---KALFHLAYNKK-------AADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGI  197 (388)
T ss_pred             ---------hHHH---HHHHHHHHHhh-------hccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCc
Confidence                     0111   00011112211       2245678888888776432 22     1233335788999999988


Q ss_pred             CC--cc----hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          150 RE--VP----ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       150 ~~--lp----~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ..  +.    ..+..+.+|+.|||..|. ++-..+..  +...+... .|+.|.+.+|.++
T Consensus       198 rpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~--La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         198 RPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRY--LADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             CcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHH--HHHHhcccchhhhccccchhhc
Confidence            42  11    234568899999999988 44111111  22233344 6788999999865

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.14  E-value=0.012  Score=54.64  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             CCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEEEccCCC
Q 014835          111 MFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSNIK  171 (417)
Q Consensus       111 ~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~  171 (417)
                      .|+.|+.|.|+-|++...-|  +..+++|++|+|..|.|.++.+  -+.++++|+.|.|..|+
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            34444444444444332211  3344444444444444433322  23444444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.43  E-value=0.36  Score=27.63  Aligned_cols=19  Identities=16%  Similarity=0.330  Sum_probs=12.1

Q ss_pred             CCCCEEEeeccCCCCcchh
Q 014835          137 EALETLIVDRTAMREVPES  155 (417)
Q Consensus       137 ~~L~~L~L~~n~l~~lp~~  155 (417)
                      ++|+.|+|++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.43  E-value=0.36  Score=27.63  Aligned_cols=19  Identities=16%  Similarity=0.330  Sum_probs=12.1

Q ss_pred             CCCCEEEeeccCCCCcchh
Q 014835          137 EALETLIVDRTAMREVPES  155 (417)
Q Consensus       137 ~~L~~L~L~~n~l~~lp~~  155 (417)
                      ++|+.|+|++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.10  E-value=0.15  Score=50.07  Aligned_cols=183  Identities=17%  Similarity=0.110  Sum_probs=108.9

Q ss_pred             cccEEEeecC-CCc--ccCccccCCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCc
Q 014835           10 HVYTLELVKV-GIK--ELPSSIECLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI   84 (417)
Q Consensus        10 ~L~~L~Ls~n-~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~   84 (417)
                      +|++|+++.+ .++  .+-.-...++.|+.+.+++|.-.+.  +-..-....-+..+++..|+.++...-         .
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---------~  287 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---------W  287 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH---------H
Confidence            7888888873 333  2333355677788888888754431  111112344566677777765554321         1


Q ss_pred             cc-ccccc-ceEEcCCCCCCCCCcc--cccCCCCCcEEecccccCCccCC--cccCCCCCCCEEEeeccCCC---Ccchh
Q 014835           85 GI-ERLAS-CRLVLEDCSSLQSLPS--SLCMFKSLTSLEIIDCQYFMILP--DELGNLEALETLIVDRTAMR---EVPES  155 (417)
Q Consensus        85 ~l-~~l~~-~~L~L~~n~~l~~lp~--~l~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~n~l~---~lp~~  155 (417)
                      .+ ..... +.|..++|...+..+-  -..+..+|+.|-+++|+..+..-  ..-.+.+.|+.|++.++...   ++-..
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            11 22344 7778887766543321  12356899999999998543321  11245778999999888762   23333


Q ss_pred             ccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          156 LGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       156 l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      -.+++.|+.|.|++|..+++..-.  .+...-... .+..+.+++|++.
T Consensus       368 s~~C~~lr~lslshce~itD~gi~--~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIR--HLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhh--hhhhccccccccceeeecCCCCc
Confidence            357889999999999866643000  012222334 7888999999854

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.76  E-value=0.19  Score=51.04  Aligned_cols=62  Identities=26%  Similarity=0.282  Sum_probs=28.0

Q ss_pred             CCCCcEEecccccC-CccCCcccC-CCCCCCEEEeeccC-CC--CcchhccCCCCCcEEEccCCCCC
Q 014835          112 FKSLTSLEIIDCQY-FMILPDELG-NLEALETLIVDRTA-MR--EVPESLGQLSSLKILVLSNIKRL  173 (417)
Q Consensus       112 l~~L~~L~L~~n~~-~~~lp~~l~-~l~~L~~L~L~~n~-l~--~lp~~l~~L~~L~~L~L~~n~~l  173 (417)
                      +.+|+.|+++.+.. ....-..+. .+++|+.|.+.++. ++  .+-.....+++|++|+|+.|..+
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            45555555555542 211111111 24556666555444 32  22222344555666666665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.38  E-value=0.026  Score=51.14  Aligned_cols=86  Identities=14%  Similarity=0.139  Sum_probs=57.8

Q ss_pred             cccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcE
Q 014835           86 IERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKI  164 (417)
Q Consensus        86 l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~  164 (417)
                      +..... +.||++.|+. ..+-..+..++.|..|+++.|. ...+|..++....+..+++..|+.+..|.+.+.++++++
T Consensus        38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            333444 5555555532 2333445566777777877765 455677777777777788888888888888888888888


Q ss_pred             EEccCCCCC
Q 014835          165 LVLSNIKRL  173 (417)
Q Consensus       165 L~L~~n~~l  173 (417)
                      +++.++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            888777733

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 9e-27
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 31/194 (15%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSI---------FKLKSLQSIEISNCPIFER 71
           ++ LP+SI  L+ L++L I  C  L  +   +           L +LQS+ +    I   
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--- 195

Query: 72  FTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP 130
              +P+        I  L +   L + +   L +L  ++     L  L++  C      P
Sbjct: 196 -RSLPA-------SIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 131 DELGNLEALETLIV-DRTAMREVPESLGQLSSLKILVLSN---IKRLPEYL-QL----HL 181
              G    L+ LI+ D + +  +P  + +L+ L+ L L     + RLP  + QL     +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 182 QLPENGLEGIPEYL 195
            +P +    + ++ 
Sbjct: 307 LVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 4e-26
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 24/175 (13%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
            LEL  V + + P     LS+L+ + I     L  +  ++ +   L+++ ++  P+    
Sbjct: 85  ALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL---- 139

Query: 73  TEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLC------MFKSLTSLEIIDCQY 125
             +P+        I  L   R L +  C  L  LP  L         + L +L+ +  ++
Sbjct: 140 RALPA-------SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 126 --FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN---IKRLPE 175
                LP  + NL+ L++L +  + +  +  ++  L  L+ L L     ++  P 
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 31/216 (14%)

Query: 27  SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIP-------SCN 79
                S  + LY    + L      + + +   + + +      R            +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 80  IDGGI--GIERLASCRL-VLE-DCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGN 135
                   +E         LE     L   P        L  + I      M LPD +  
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQ 125

Query: 136 LEALETLIVDRTAMREVPESLGQLSSLKILVLS---NIKRLPEYL-------------QL 179
              LETL + R  +R +P S+  L+ L+ L +     +  LPE L              L
Sbjct: 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 180 -HLQLPENGLEGIPEYLRR--SPRKLTLDPNELSEI 212
             L+L   G+  +P  +    + + L +  + LS +
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
           +L L   GI+ LP+SI  L NLK L I +   L ++  +I  L  L+ +++  C      
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGC---TAL 242

Query: 73  TEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPD 131
              P             A   RL+L+DCS+L +LP  +     L  L++  C     LP 
Sbjct: 243 RNYPPI-------FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 132 ELGNLEALETLIVDRTAMREVPESL 156
            +  L A   ++V      ++ +  
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
           +  L  +I  L  L++L +  C+ L +          L+ + + +C        +P    
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS---NLLTLPL--- 271

Query: 81  DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEAL 139
                I RL    +L L  C +L  LPS +    +   + +       +         A 
Sbjct: 272 ----DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 14/122 (11%)

Query: 102 LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSS 161
           + S            +L            D L   +       +R             ++
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANSNN 57

Query: 162 LKILVLS--NIKRLPEYLQ-------LHLQLPENGLEGIPEYLRR--SPRKLTLDPNELS 210
            +I   +   +K   + L+       + L+L    L   P+   R    + +T+D   L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 211 EI 212
           E+
Sbjct: 118 EL 119

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 3e-19
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 31/216 (14%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
            +    S   L +L  + + +C  +  +   ++ L  LQS+ I+      R         
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN----RGISAAQLKA 535

Query: 81  DGGIGIERLASCR----LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELG 134
           D     +   +        +   + L+  P+S    + +  L ++DC +     L    G
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVRHLE-AFG 592

Query: 135 NLEALETLIVDRTAMREVPESLGQ-LSSLKILVLSN--IKRLPEYLQLH-------LQLP 184
               L  L +D   + E+PE        ++ L  S+  +K +P             +   
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 185 ENGLEGIPEYLRRSP--------RKLTLDPNELSEI 212
            N +      +  S           +TL  NE+ + 
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 39/225 (17%)

Query: 13  TLELVKVGIKELPSSIEC----LSNLKKLYIVDCS-MLESISSSIFKLKSLQSIEISNCP 67
             +L++  I   P           +LK   I + +  +  IS +I +L  LQ I  +N  
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS- 458

Query: 68  IFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM 127
               FT               +       +     ++   S    K LT +E+ +C    
Sbjct: 459 ---PFTYDNIA----------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 128 ILPDELGNLEALETLIVDR----------TAMREVPESLGQLSSLKILVLS--NIKRLPE 175
            LPD L +L  L++L +                 + +       ++I  +   N++  P 
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 176 YLQL-------HLQLPENGLEGIPEYLR-RSPRKLTLDPNELSEI 212
              L        L    N +  +  +        L LD N++ EI
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 56/242 (23%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESI--SSSIFKLKSLQSIEISNCPIFERFTEIPS 77
           I+E+P         ++ L       L+ I    +   +  + S++ S   I         
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI----GSEGR 661

Query: 78  CNIDGGIGIER--------LASCRL------VLEDCSSLQ----------SLPSSLC--- 110
            NI   +   +        L+   +      +    S +           S+P +     
Sbjct: 662 -NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 111 --MFKSLTSLEIIDCQY--FMILPDEL--GNLEALETLIVDRTAMREVPESLGQLSSLKI 164
              +K+   L  ID ++     L D+     L  L  + V        P      S LK 
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 165 LVLSN---------IKRLPEYL----QL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELS 210
             + +         +++ P  +     L  LQ+  N +  + E L      L +  N   
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840

Query: 211 EI 212
            I
Sbjct: 841 SI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 27/231 (11%), Positives = 57/231 (24%), Gaps = 46/231 (19%)

Query: 23  ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG 82
            +P +I  L+ LK L                  +   + ++S               +D 
Sbjct: 338 RVPDAIGQLTELKVLS-FGTHSETVSGRLFGDEEL--TPDMSEERKHRIRMHYKKMFLDY 394

Query: 83  GIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ-YFMILPDELGNLEALET 141
              +      +  +     ++ +        SL   +I +       +   +  L  L+ 
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDS--RISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 142 LIVDR--------------------TAMREVPESLGQLSSLKILVLSN---IKRLPEYL- 177
           +                                S   L  L  + L N   + +LP++L 
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 178 ---QL-HLQLPENGLEGIPEYLRRSP------------RKLTLDPNELSEI 212
              +L  L +  N      +                  +   +  N L E 
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 35/213 (16%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
             K +  S        ++  +  + +  +S ++ +L  L+   + N              
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNS------------P 217

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEAL 139
                  E   +     E     ++        K LT +E+ +C     LP  L  L  +
Sbjct: 218 FVAENICEAWEN--ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 140 ETLIVDRTAMREVPE---------SLGQLSSLKILVLS--NIKRLPEYLQL-------HL 181
           + + V         +                ++I+ +   N+K  P    L        L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 182 QLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
           +   N LEG             L L  N+++EI
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 36/203 (17%)

Query: 22  KELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID 81
           K      + L +L  + + +C  L  + + +  L  +Q I ++      R         D
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN----RGISGEQLKDD 294

Query: 82  GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALET 141
                +              +Q +        +L +  +            L  ++ L  
Sbjct: 295 WQALAD--------APVGEKIQIIYIGYN---NLKTFPV---------ETSLQKMKKLGM 334

Query: 142 LIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYL-----QL-HLQLPENGLEGIPE 193
           L      +     + G    L  L L+   I  +P        Q+ +L    N L+ IP 
Sbjct: 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 194 YLR----RSPRKLTLDPNELSEI 212
                       +    NE+  +
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSV 417

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 24/220 (10%), Positives = 68/220 (30%), Gaps = 36/220 (16%)

Query: 14  LELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT 73
           +  +   I  +  ++  L+ L++ Y+ +   +       ++ ++ +  +         + 
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ--------YK 239

Query: 74  EIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSL--------EIIDCQ 124
                        + L     + + +C +L  LP+ L     +  +             +
Sbjct: 240 TEDL-------KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 125 YFMILPDELGNLEALETLIVDRTAMREV--PESLGQLSSLKILVLSN--IKRLPEYL--- 177
                  +    E ++ + +    ++      SL ++  L +L      ++         
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 178 -QL-HLQLPENGLEGIPEYLRRSPRKLT---LDPNELSEI 212
            +L  L L  N +  IP        ++       N+L  I
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 32/219 (14%)

Query: 21  IKELPSSIEC--LSNLKKLYI-------VDCSMLESISSSIFKLKSLQSIEISNCPIFER 71
           +K +P+  +   +S +  +         VD    + +  + FK  ++ SI +SN     +
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN----Q 444

Query: 72  FTEIPSCNIDGGIGIERL--ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL 129
            ++ P      G  +  +      L     +SL+    +      LTS+++   +    L
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKL 503

Query: 130 PDEL--GNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRL---------PEYL- 177
            D+     L  L  + +   +  + P      S+LK   + N +           PE + 
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 178 ---QL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
               L  LQ+  N +  + E +  +   L +  N    I
Sbjct: 564 LCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 41/232 (17%)

Query: 10  HVYTLELVKVGIK-ELPSSIECLSNLKKLYI----VDCSMLESISSSIFKLKSLQSIEIS 64
            V  L L   G    +P +I  L+ L+ L +       +        I    S +  +  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 65  NCPIFERF-TEIPSCN-----------IDGGIGIERLASCRLVLED----CSSLQSLPSS 108
                + F    P  +                 I++ +   L         +++  +  +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS 168
           +     L    + +  +      E    E  E         +        L  L  + + 
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVY 257

Query: 169 N---IKRLPEYL-QL----HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
           N   + +LP +L  L     + +  N      +        L  D   L++ 
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQ--------LKDDWQALADA 301

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 13/169 (7%), Positives = 37/169 (21%), Gaps = 16/169 (9%)

Query: 31  LSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLA 90
              +  L +        +  +I +L  L+ + + +                 GI      
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH----GEKVNERLFGPKGISANMS- 134

Query: 91  SCRLVLEDCSSLQSLPSSL-----CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVD 145
                 +    +    + +       F  L    I        +            +   
Sbjct: 135 ---DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 146 RTAMREVPESLGQLSSLKILVLSNIK---RLPEYLQLHLQLPENGLEGI 191
              +  V +++ +L+ L+   + N             +           
Sbjct: 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 18/132 (13%)

Query: 99  CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR-----EVP 153
                    SL     +T L +        +PD +G L  LE L +     +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 154 ESLGQLSSLKILVLSNIKRLP---------EYLQL-HLQLPENGLEG-IPEYLRRSPR-- 200
           + +    S +      +             ++  L    +  +  +  I +  R + +  
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 201 KLTLDPNELSEI 212
           ++    N ++ +
Sbjct: 187 QIGQLSNNITFV 198

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 28/203 (13%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
            L +    +++LP  ++  S LK + + + S L+ +      L+ +      N     + 
Sbjct: 135 YLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIA---AGNN----QL 185

Query: 73  TEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPD 131
            E+P         ++ L     +  ++ S L+ LP       SL S+   +      LP 
Sbjct: 186 EELPE--------LQNLPFLTAIYADNNS-LKKLPDLPL---SLESIVAGNNI-LEELP- 231

Query: 132 ELGNLEALETLIVDRTAMREVPESLGQLSSLKIL--VLSNIKRLPEYLQLHLQLPENGLE 189
           EL NL  L T+  D   ++ +P+    L +L +    L+++  LP+ L   L + EN   
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT-FLDVSENIFS 290

Query: 190 GIPEYLRRSPRKLTLDPNELSEI 212
           G+ E    +   L    NE+  +
Sbjct: 291 GLSELP-PNLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 42/223 (18%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF 69
             + LEL  +G+  LP       +L+ L    C+ L  +      LKSL     +   + 
Sbjct: 72  QAHELELNNLGLSSLPELP---PHLESLV-ASCNSLTELPELPQSLKSLLVDNNNLKALS 127

Query: 70  E-------------RFTEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSL 115
           +             +  ++P         ++  +  + + +++  SL+ LP       SL
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPE--------LQNSSFLKIIDVDNN-SLKKLPDLP---PSL 175

Query: 116 TSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRL 173
             +   + Q    LP EL NL  L  +  D  +++++P+      SL+ +V  N  ++ L
Sbjct: 176 EFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEEL 230

Query: 174 PEYLQL----HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
           PE   L     +    N L+ +P+    S   L +  N L+++
Sbjct: 231 PELQNLPFLTTIYADNNLLKTLPDLP-PSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 46/214 (21%)

Query: 21  IKELPSSIECLSNLKKLYI--------------VDCS--MLESISSSIFKLKSLQSIEIS 64
           + ELP   + L +L                   +  S   LE +   +     L+ I++ 
Sbjct: 103 LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL-PELQNSSFLKIIDVD 161

Query: 65  NCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ 124
           N  +     ++P            L    +   +   L+ LP      ++L  L  I   
Sbjct: 162 NNSL----KKLPD-------LPPSLEF--IAAGNN-QLEELPE----LQNLPFLTAIYAD 203

Query: 125 Y--FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL- 179
                 LPD   +   LE+++     + E+PE L  L  L  +   N  +K LP+     
Sbjct: 204 NNSLKKLPDLPLS---LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSL 259

Query: 180 -HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
             L + +N L  +PE   +S   L +  N  S +
Sbjct: 260 EALNVRDNYLTDLPELP-QSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 32/192 (16%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84
           P ++   + L++      S L  +      +KS      +                    
Sbjct: 5   PRNVS-NTFLQEPLR-HSSNLTEMPVEAENVKSKTEYYNAWSEW---------------- 46

Query: 85  GIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIV 144
                 +      +   +       C+ +    LE+ +      LP+   +   LE+L+ 
Sbjct: 47  ----ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPH---LESLVA 98

Query: 145 DRTAMREVPESLGQLSSLKILVLS--NIKRLPEYLQLHLQLPENGLEGIPEYLRRSP--R 200
              ++ E+PE    L SL +   +   +  LP  L+ +L +  N LE +PE L+ S   +
Sbjct: 99  SCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE-YLGVSNNQLEKLPE-LQNSSFLK 156

Query: 201 KLTLDPNELSEI 212
            + +D N L ++
Sbjct: 157 IIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 42/187 (22%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
            L++ +     L        NL  L          I S      SL+ + +SN     + 
Sbjct: 281 FLDVSENIFSGLSELPP---NLYYLNASSNE----IRSLCDLPPSLEELNVSNN----KL 329

Query: 73  TEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDE 132
            E+P+          RL   RL+      L  +P       +L  L +         PD 
Sbjct: 330 IELPAL-------PPRLE--RLIASFNH-LAEVPELPQ---NLKQLHVEYNP-LREFPDI 375

Query: 133 LGNLE----------------ALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEY 176
             ++E                 L+ L V+   +RE P+    +  L++     +    E+
Sbjct: 376 PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE-RVVDPYEF 434

Query: 177 LQLHLQL 183
                  
Sbjct: 435 AHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 128 ILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENG 187
           I P  + N   L+  +   + + E+P     + S      +  +        + +  E  
Sbjct: 3   INPRNVSNTF-LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 188 LEGIPEYLRRSPRKLTLDPNELSEI 212
           +  + + L R   +L L+   LS +
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSL 86

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 42/218 (19%), Positives = 70/218 (32%), Gaps = 38/218 (17%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF 69
           H+ TL +    +  LP+       L+ L +     L S+      L  L         + 
Sbjct: 62  HITTLVIPDNNLTSLPALPP---ELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLP 117

Query: 70  E-------------RFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLT 116
                         + T +P            L    L + D   L SLP+       L 
Sbjct: 118 ALPSGLCKLWIFGNQLTSLPVL-------PPGLQE--LSVSDN-QLASLPALPS---ELC 164

Query: 117 SLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKIL--VLSNIKRLP 174
            L   + Q    LP        L+ L V    +  +P    +L  L      L+++  LP
Sbjct: 165 KLWAYNNQ-LTSLPMLPSG---LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP 220

Query: 175 EYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
             L+  L +  N L  +P       ++L +  N L+ +
Sbjct: 221 SGLK-ELIVSGNRLTSLPVLP-SELKELMVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 30/180 (16%)

Query: 9   CHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI 68
             +  L      +  LP      S L++L + D   L S+ +   +L  L      N   
Sbjct: 161 SELCKLWAYNNQLTSLPMLP---SGLQELSVSDNQ-LASLPTLPSELYKL---WAYNN-- 211

Query: 69  FERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI 128
             R T +P+           L    L++     L SLP        L  L +   +    
Sbjct: 212 --RLTSLPA-------LPSGLKE--LIVSGNR-LTSLPVLPS---ELKELMVSGNR-LTS 255

Query: 129 LPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLHLQLPEN 186
           LP     L    +L V R  +  +PESL  LSS   + L    +          +     
Sbjct: 256 LPMLPSGLL---SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 25/192 (13%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
           +  LP+     S L KL+  +   L S+ +    LK L    +S   +    T +P    
Sbjct: 193 LASLPTLP---SELYKLWAYNNR-LTSLPALPSGLKEL---IVSGNRL----TSLPV--- 238

Query: 81  DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE 140
                   L    L++     L SLP        L SL +   Q    LP+ L +L +  
Sbjct: 239 ----LPSELKE--LMVSGNR-LTSLPMLPS---GLLSLSVYRNQ-LTRLPESLIHLSSET 287

Query: 141 TLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPR 200
           T+ ++   + E      +  +        I R         +          ++L  +  
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

Query: 201 KLTLDPNELSEI 212
                 +     
Sbjct: 348 GEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 36/176 (20%)

Query: 55  LKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKS 114
                 + +    +    T +P C     +    + +  LV+ D + L SLP+       
Sbjct: 39  NNGNAVLNVGESGL----TTLPDC-----LP-AHITT--LVIPDNN-LTSLPALPP---E 82

Query: 115 LTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL--------------S 160
           L +LE+   Q    LP     L  L       T +  +P  L +L               
Sbjct: 83  LRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP 141

Query: 161 SLKILVLSN--IKRLPEYL-QL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
            L+ L +S+  +  LP    +L  L    N L  +P       ++L++  N+L+ +
Sbjct: 142 GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP-SGLQELSVSDNQLASL 196

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 21/224 (9%)

Query: 2   NFPSVTSCHVYTLELVKVGIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQ 59
               V +  +  L + +  +    S++   L  +K++ + +   +  +  S  + LKSL+
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLE 337

Query: 60  SIEISNCPIFERFTEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSL 118
            +++S   + E + +  +C            S + LVL     L+S+  +  +  +L +L
Sbjct: 338 FLDLSENLMVEEYLKNSAC-------KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL 389

Query: 119 EIIDCQY--FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLP 174
             +D     F  +PD     E +  L +  T +R V   +    +L++L +SN  +    
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS 447

Query: 175 EYL-QL-HLQLPENGLEGIPEY-LRRSPRKLTLDPNELSEIVKD 215
            +L +L  L +  N L+ +P+  L      + +  N+L  +   
Sbjct: 448 LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFE 70
           TL L +  ++ +  + E L  LK L  +D S      +  S    + ++ + +S+     
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST---- 420

Query: 71  RFTEIPSCNIDGGIGIERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMI 128
               + +C               L + D S+  L S    L     L  L I   +    
Sbjct: 421 GIRVVKTCIPQ-----------TLEVLDVSNNNLDSFSLFL---PRLQELYISRNK-LKT 465

Query: 129 LPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVLSN 169
           LPD       L  + + R  ++ VP+    +L+SL+ + L  
Sbjct: 466 LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 41/195 (21%)

Query: 13  TLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFE 70
            LE+  + ++   S S++ + ++  L +        +       L S++ +E+ +  +  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNL-A 209

Query: 71  RFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY----- 125
           RF   P    +    +++LA    VL D  S   L   L     L+ +E  DC       
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDE-SFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 126 ------------------------------FMILPDELGNLEALETLIVDRTAMREVPES 155
                                         F  L      LE ++ + V+ + +  VP S
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 156 LGQ-LSSLKILVLSN 169
             Q L SL+ L LS 
Sbjct: 329 FSQHLKSLEFLDLSE 343

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 54/214 (25%)

Query: 27  SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-EIPSCNIDGGIG 85
            +   S L+ L I    +    S +I     L+ + IS+     +F   IP         
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN----QFVGPIPPLP------ 267

Query: 86  IERLASCRLVLEDCSSLQSL-----------PSSLC-MFKSLTSLEIIDCQYFMILPDEL 133
                          SLQ L           P  L     +LT L++    ++  +P   
Sbjct: 268 -------------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 134 GNLEALETLIVDRTAMR-EVP-ESLGQLSSLKILVLSN----------IKRLPEYLQLHL 181
           G+   LE+L +       E+P ++L ++  LK+L LS           +  L   L   L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL-TL 373

Query: 182 QLPENGLEG-IPEYLRRSPRK----LTLDPNELS 210
            L  N   G I   L ++P+     L L  N  +
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 47/212 (22%)

Query: 23  ELPSSI--ECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-EIPSCN 79
            +  ++     + L++LY+ +      I  ++     L S+ +S        +  IPS  
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN----YLSGTIPSS- 437

Query: 80  IDGGIGIERLASCRLVLEDCSSLQ-----------SLPSSLCMFKSLTSLEIIDCQYFMI 128
                           L   S L+            +P  L   K+L +L +        
Sbjct: 438 ----------------LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 129 LPDELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSNIK---RLPEYL----QLH 180
           +P  L N   L  + +    +  E+P+ +G+L +L IL LSN      +P  L     L 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 181 -LQLPENGLEG-IPEYLRRSPRKLTLDPNELS 210
            L L  N   G IP  + +   K+    N ++
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAA--NFIA 571

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 22/165 (13%)

Query: 23  ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-EIPSC--- 78
           E+P  I  L NL  L + + S   +I + +   +SL  ++++       F   IP+    
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT----NLFNGTIPAAMFK 560

Query: 79  --------NIDGGIGIE-----RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY 125
                    I G   +          C                L    +     I    Y
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 126 FMILPDELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSN 169
                    N  ++  L +    +   +P+ +G +  L IL L +
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 46/260 (17%), Positives = 93/260 (35%), Gaps = 62/260 (23%)

Query: 10  HVYTLELVKVGIK----ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN 65
            V +++L    +      + SS+  L+ L+ L++ +  +  S+ S      SL S+++S 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSR 109

Query: 66  CPIFERFTEIPS--------------CNIDGGIGIERLASCR------------------ 93
             +    T + S                +D    +                         
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 94  --LVLEDCSSLQSL---------PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETL 142
             ++ + C  L+ L            +    +L  L++    +   +P  LG+  AL+ L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 143 IVDRTAMR-EVPESLGQLSSLKILVLSNIK---RLPE----YLQLHLQLPENGLEG-IPE 193
            +    +  +   ++   + LK+L +S+ +    +P      LQ +L L EN   G IP+
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ-YLSLAENKFTGEIPD 287

Query: 194 YLRRSPRKLT---LDPNELS 210
           +L  +   LT   L  N   
Sbjct: 288 FLSGACDTLTGLDLSGNHFY 307

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 7e-12
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 48/217 (22%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF 69
            +  LE+ +  +  LP     L  L        + L ++      LK L    + N    
Sbjct: 81  QITVLEITQNALISLPELPASLEYLD----ACDNRLSTLPELPASLKHLD---VDNN--- 130

Query: 70  ERFTEIPSCNIDGGIG-IERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQYF 126
            + T +P          +E +        +  +  L  LP       SL  L + + Q  
Sbjct: 131 -QLTMLPEL-----PALLEYI--------NADNNQLTMLPELPT---SLEVLSVRNNQ-L 172

Query: 127 MILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN 186
             LP+   +   LE L V    +  +P    +                E  ++  +  EN
Sbjct: 173 TFLPELPES---LEALDVSTNLLESLPAVPVRNHHS------------EETEIFFRCREN 217

Query: 187 GLEGIPEYLRR--SPRKLTLDPNELSEIVKDGWMKQS 221
            +  IPE +        + L+ N LS  +++   +Q+
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
           +  LP      + L+ +   +   L  +      L+ L    + N  +    T +P    
Sbjct: 132 LTMLPELP---ALLEYINADNNQ-LTMLPELPTSLEVL---SVRNNQL----TFLPEL-- 178

Query: 81  DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEII-DCQYFMI--LPDELGNLE 137
                 E L    L +     L+SLP+           EI   C+   I  +P+ + +L+
Sbjct: 179 -----PESL--EALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

Query: 138 ALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQL---HLQLPENGLEGIPE 193
              T+I++   +     ESL Q ++        I       Q    H  L +      PE
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

Query: 194 YLRRSPRKLTLD 205
             +    ++   
Sbjct: 291 NKQSDVSQIWHA 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 13/161 (8%)

Query: 55  LKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKS 114
           L    +  +S    +   +   +   D     ++     L  E+ +   SL    C+   
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYA---DYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQ 60

Query: 115 LTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN-IKRL 173
            + L++        LPD L     +  L + + A+  +PE    L  L      N +  L
Sbjct: 61  FSELQLNRLN-LSSLPDNLPPQ--ITVLEITQNALISLPELPASLEYLD--ACDNRLSTL 115

Query: 174 PEYL-QL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
           PE    L HL +  N L  +PE        +  D N+L+ +
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELP-ALLEYINADNNQLTML 155

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 31/223 (13%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF 69
            V TL+  ++GIK +   +E L+NL ++   +   L  I + +  L  L  I ++N  I 
Sbjct: 47  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDI-TPLKNLTKLVDILMNNNQI- 102

Query: 70  ERFTEIPSCNIDGGIGIERL--ASCRL----VLEDCSSLQSL------PSSLCMFKSLTS 117
               +I    +     +  L   + ++     L++ ++L  L       S +     LTS
Sbjct: 103 ---ADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 157

Query: 118 LEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPE 175
           L+ +     +     L NL  LE L +    + +    L +L++L+ L+ +N  I  +  
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP 216

Query: 176 YLQL----HLQLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
              L     L L  N L+ I   L        L L  N++S +
Sbjct: 217 LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNL 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 39/202 (19%)

Query: 26  SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85
           S I  LS L  L  +      +    +  L +L+ ++IS+  +    ++I          
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV----SDISV-------- 194

Query: 86  IERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEA 138
                     L   ++L+SL       S +     LT+L+ +      +     L +L  
Sbjct: 195 ----------LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 244

Query: 139 LETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL----HLQLPENGLEGIP 192
           L  L +    +  +   L  L+ L  L L    I  +     L    +L+L EN LE I 
Sbjct: 245 LTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 303

Query: 193 E--YLRRSPRKLTLDPNELSEI 212
               L ++   LTL  N +S+I
Sbjct: 304 PISNL-KNLTYLTLYFNNISDI 324

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 38/202 (18%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84
             ++  L+NL  L + +   + ++ + +  L  L  +++    I    + I         
Sbjct: 236 IGTLASLTNLTDLDLANNQ-ISNL-APLSGLTKLTELKLGANQI----SNISP------- 282

Query: 85  GIERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMIL-PDELGNLE 137
                      L   ++L +L         +    +L +L  +   +  I     + +L 
Sbjct: 283 -----------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 331

Query: 138 ALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL----HLQLPENGLEGI 191
            L+ L      + +V   L  L+++  L   +  I  L     L     L L +      
Sbjct: 332 KLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNA 390

Query: 192 PEYLRRSPRKLTLDPNELSEIV 213
           P   + +        N    ++
Sbjct: 391 PVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
           S++  LS L KL  +      + +IS  +  L +L ++E++   +     +I    I   
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL----EDIS--PISNL 308

Query: 84  IGIERL--ASCRLV----LEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMIL-P 130
             +  L      +     +   + LQ L       S +    +LT++  +   +  I   
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 368

Query: 131 DELGNLEALETLIVDRTAMREVPESLGQLSSLKILVL---------SNIKRLPEYLQLHL 181
             L NL  +  L ++  A    P +     S+   V          + I     Y +  +
Sbjct: 369 TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

Query: 182 QLPENGLEGIPE 193
               N      E
Sbjct: 429 T--WNLPSYTNE 438

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 45/217 (20%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
              L K  + ++ +  E L ++ KL +     + SI   I  L +L+ + ++   I    
Sbjct: 26  RAVLQKASVTDVVT-QEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQI---- 78

Query: 73  TEIPSCNIDGGIGIERLASCRLVLEDCSSLQSL---------PSSLCMFKSLTSLEIIDC 123
           T+I                    L +   L +L          S+L    +L  L + + 
Sbjct: 79  TDISP------------------LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120

Query: 124 QYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL-- 179
               I    L NL  + +L +           L  ++ L  L ++   +K +     L  
Sbjct: 121 NISDI--SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD 178

Query: 180 --HLQLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
              L L  N +E I   L         T   N++++I
Sbjct: 179 LYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 35/155 (22%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
           + I  ++N+ +L  +      +  +S  +  L  L  +EI    I    ++I +      
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI----SDINA------ 260

Query: 84  IGIERLASCRLVLEDCSSLQSL---------PSSLCMFKSLTSLEIIDCQYFMILPDELG 134
                       ++D + L+ L          S L     L SL + + Q      + +G
Sbjct: 261 ------------VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 135 NLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
            L  L TL + +  + ++   L  LS +     +N
Sbjct: 309 GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 23/219 (10%)

Query: 2   NFPSVTSCHVYTLELVKVGIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQ 59
            F  +T  +   +      +++LP+++ +    ++ L + D   +E I +  F    ++Q
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQ 96

Query: 60  SIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLE 119
            + +    I      +P         +  L    L   + + L SLP  +  F +   L 
Sbjct: 97  KLYMGFNAI----RYLPP---HVFQNVPLLTVLVL---ERNDLSSLPRGI--FHNTPKLT 144

Query: 120 IIDCQY--FMILPDE-LGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLP 174
            +         + D+      +L+ L +    +  V   L  + SL    +S   +  L 
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA 202

Query: 175 EYLQLH-LQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
             + +  L    N +  +   +      L L  N L++ 
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 241

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 40/237 (16%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPI----FERFTE 74
           +  LP  I      L  L + + + LE I    F+   SLQ++++S+  +          
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

Query: 75  IPSCNIDGGIGIERLASC----RLVLEDCSSLQSLPSSLCM-----------------FK 113
           +   N+     +  LA       L     S +  +   + +                   
Sbjct: 188 LFHANVSY-NLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDTAWLL 245

Query: 114 SLTSLEIIDCQY---FMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN- 169
           +   L  +D  Y     I+      ++ LE L +    +  +      + +LK+L LS+ 
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305

Query: 170 -IKRLPEYL----QL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQ 220
            +  +        +L +L L  N +  +      + + LTL  N+          + 
Sbjct: 306 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN 362

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 29/195 (14%)

Query: 26  SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85
           S++     +++L     S +  +   +     L  +++ +  +    T+           
Sbjct: 199 STLAIPIAVEELDASHNS-INVVRGPVNV--ELTILKLQHNNL----TDTAW-------- 243

Query: 86  IERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELGNLEALETL 142
           +        + L     L+ +      F  +  LE +       + L      +  L+ L
Sbjct: 244 LLNYPGLVEVDLSYNE-LEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 143 IVDRTAMREVPESLGQLSSLKILVLSN--IKRLPE----YLQLHLQLPENGLEGIP-EYL 195
            +    +  V  +  Q   L+ L L +  I  L       L+ +L L  N  +      L
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK-NLTLSHNDWDCNSLRAL 359

Query: 196 RRSPRKLTLDPNELS 210
            R+  +  +D  +  
Sbjct: 360 FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 34/205 (16%), Positives = 76/205 (37%), Gaps = 24/205 (11%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
             K + S+++       ++I   +           L + + +   N  +     ++P+  
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM----RKLPAAL 64

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDELGNL 136
           +D    +E      L L D   ++ + +    F    +++ +   +     + P    N+
Sbjct: 65  LDSFRQVE-----LLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116

Query: 137 EALETLIVDRTAMREVPESL-GQLSSLKILVLSN--IKRLPEYL-----QL-HLQLPENG 187
             L  L+++R  +  +P  +      L  L +SN  ++R+ +        L +LQL  N 
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 188 LEGIPEYLRRSPRKLTLDPNELSEI 212
           L  +   L  S     +  N LS +
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTL 201

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 50/239 (20%), Positives = 77/239 (32%), Gaps = 44/239 (18%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
            L+L    + ELPS +  LS LKKL +           S     SL  + I         
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK---R 338

Query: 73  TEIPSCNIDG----------GIGIERLASCRLVLEDCSSLQSL----------PSSLCMF 112
            E+ +  ++              IE    C L L + S LQSL           +    F
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--F 396

Query: 113 KSLTSLEIIDCQY----FMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVL 167
           K    LE++D  +             NL  L+ L +  + +     +    L +L+ L L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 168 SN------IKRLPEYLQ-----LHLQLPENGLEGIPEYLRRSPRKLT---LDPNELSEI 212
                     +    LQ       L L    L  I ++   S + +    L  N L+  
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 28/200 (14%)

Query: 21  IKELPSSIECLSNLKKLYIVDCS--MLESISSSIFK-LKSLQSIEISNCPIFERFTEIPS 77
           I+        L NL  L  ++ S     S+ +  FK    L+ ++++      R     +
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT----RLKVKDA 417

Query: 78  CNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY------FMILPD 131
            +    +    L    L     S L      L  F  L +L+ ++ Q        +   +
Sbjct: 418 QSPFQNL--HLLKVLNL---SHSLLDISSEQL--FDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 132 ELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSN--IKRLPEYL-----QLHLQL 183
            L  L  LE L++    +  +   +   L  +  + LS+  +             ++L L
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530

Query: 184 PENGLEGIPEYLRRSPRKLT 203
             N +  I   L     +  
Sbjct: 531 ASNHISIILPSLLPILSQQR 550

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 10/156 (6%)

Query: 25  PSSIECLSNLKKLYIVDCSM--LESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG 82
              +  L     L + + +   +  I    F     QS+             +       
Sbjct: 170 KEDMSSLQQATNLSL-NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL-----LVIFKGLK 223

Query: 83  GIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETL 142
              I+ L        D   +           S+ S+ +    +F I  +       L+ L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 143 IVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEY 176
            +  T + E+P  L  LS+LK LVLS    + L + 
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 30/201 (14%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
           G+ E+P ++   ++ + L       L +I ++ F  L +L  ++++ C    +   I   
Sbjct: 23  GLNEIPGTL--PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRC----QIYWIHED 75

Query: 79  NIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELGN 135
                  ++      LVL     L  +  +        +L+ +         I    L N
Sbjct: 76  TFQSQHRLD-----TLVLTAN-PLIFMAETA--LSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 136 LEALETLIVDRTAMREVP-ESLGQLSSLKILVLSN--IKRLPEYL--------QLHLQLP 184
            + LE+L +    +  +          LK+L   N  I  L +           L L L 
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 185 ENGLEGIPEYLRRSPRKLTLD 205
            N + GI      S    +L+
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLN 208

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 26/215 (12%), Positives = 59/215 (27%), Gaps = 39/215 (18%)

Query: 21  IKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
           +  +  ++   L NL  L +  C +      +      L ++ ++  P+      +    
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL----IFMAE-- 98

Query: 80  IDGGIGIERLASCR----LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDE 132
                    L+  +    L       + S+        +  +LE +         I   +
Sbjct: 99  -------TALSGPKALKHLFFIQT-GISSIDFI--PLHNQKTLESLYLGSNHISSIKLPK 148

Query: 133 LGNLEALETLIVDRTAMREV-PESLGQLSSLKILVL-----------SNIKRLPEYLQLH 180
               E L+ L     A+  +  E +  L     L L                   +  L+
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 181 LQLPENGLEGIPEYLRRSPRKLT---LDPNELSEI 212
               +N L         + + L     +  +  +I
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 24/175 (13%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCNIDGG 83
            S  + L  LK L +     L+  S  +F  L +LQ + +        F +      +  
Sbjct: 418 QSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGN----HFPKGNIQKTNSL 472

Query: 84  IGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDELGNLEALE 140
             + RL    LVL  C  L S+      F SL  +  +D  +        + L +L+ + 
Sbjct: 473 QTLGRLEI--LVLSFCD-LSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526

Query: 141 TLIVDRTAMREVPES-LGQLSSLKILVLSN--------IKRLPEYLQLHLQLPEN 186
            L +    +  +  S L  LS  + + L               E+ + ++Q  E+
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 39/223 (17%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84
            +++     LK L+ +   +       +   K+L+S+ + +  I    + I         
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI----SSIKLPKGFPTE 153

Query: 85  GIERL--ASCRL------VLEDCSSLQ------------SLPSSLCMFKSLTSLEIIDCQ 124
            ++ L   +  +       +                    +           SL     Q
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 125 YFMILPDELGN--LEALETLIVDRTAMREVPESL---GQLSSLKILVLSN--IKRLPEYL 177
             +++   L N  +++L     +     ++  ++       S++ + L       +    
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 178 -----QLH-LQLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
                 L  L L    L  +P  L      +KL L  N+   +
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 23/219 (10%)

Query: 2   NFPSVTSCHVYTLELVKVGIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIF-KLKSLQ 59
            F  +T  +   +      +++LP+++ +    ++ L + D   +E I +  F    ++Q
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQ 102

Query: 60  SIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLE 119
            + +    I      +P         +  L    LVLE    L SLP  +  F +   L 
Sbjct: 103 KLYMGFNAI----RYLPP---HVFQNVPLLTV--LVLERND-LSSLPRGI--FHNTPKLT 150

Query: 120 IIDCQY--FMILPDE-LGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLP 174
            +         + D+      +L+ L +    +  V   L  + SL    +S   +  L 
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA 208

Query: 175 EYLQL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
             + +  L    N +  +   +      L L  N L++ 
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 37/237 (15%), Positives = 77/237 (32%), Gaps = 40/237 (16%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPI----FERFTE 74
           +  LP  I      L  L + + + LE I    F+   SLQ++++S+  +          
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193

Query: 75  IPSCNIDGGIGIERLASC----RLVLEDCSSLQSLPSSLCM-----------------FK 113
           +   N+     +  LA       L     S +  +   + +                   
Sbjct: 194 LFHANVSY-NLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDTAWLL 251

Query: 114 SLTSLEIIDCQY--FMILPDE-LGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN- 169
           +   L  +D  Y     +       ++ LE L +    +  +      + +LK+L LS+ 
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311

Query: 170 -IKRLPEYL----QL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEIVKDGWMKQ 220
            +  +        +L +L L  N +  +      + + LTL  N+          + 
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN 368

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 29/195 (14%)

Query: 26  SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG 85
           S++     +++L     S +  +   +     L  +++ +  +    T+           
Sbjct: 205 STLAIPIAVEELDASHNS-INVVRGPVNV--ELTILKLQHNNL----TDTAW-------- 249

Query: 86  IERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELGNLEALETL 142
           +        + L     L+ +      F  +  LE +       + L      +  L+ L
Sbjct: 250 LLNYPGLVEVDLSYNE-LEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 143 IVDRTAMREVPESLGQLSSLKILVLSN--IKRLPE----YLQLHLQLPENGLEGIP-EYL 195
            +    +  V  +  Q   L+ L L +  I  L       L+ +L L  N  +      L
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK-NLTLSHNDWDCNSLRAL 365

Query: 196 RRSPRKLTLDPNELS 210
            R+  +  +D  +  
Sbjct: 366 FRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 30/208 (14%)

Query: 23  ELPSSIECLSNLKKLYIVDCSMLESISSSIFK------LKSLQSIEISNCPIFERFTEIP 76
             P      SNL+   +     ++  +  ++       L + + +   N        ++P
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS----TMRKLP 67

Query: 77  SCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDEL 133
           +  +D    +E      L L D   ++ + +    F    +++ +   +     + P   
Sbjct: 68  AALLDSFRQVE-----LLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 134 GNLEALETLIVDRTAMREVPESL-GQLSSLKILVLSN--IKRLPEYL-----QL-HLQLP 184
            N+  L  L+++R  +  +P  +      L  L +SN  ++R+ +        L +LQL 
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 185 ENGLEGIPEYLRRSPRKLTLDPNELSEI 212
            N L  +   L  S     +  N LS +
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLLSTL 207

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 27/221 (12%)

Query: 4   PSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIE 62
           P    CH+  ++   +G++++P  +    +   L + +   +  I    FK LK+L ++ 
Sbjct: 26  PFRCQCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLI 82

Query: 63  ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
           + N  I    ++I        + +ERL    L     + L+ LP  +   K+L  L + +
Sbjct: 83  LINNKI----SKISPGAFAPLVKLERL---YL---SKNQLKELPEKM--PKTLQELRVHE 130

Query: 123 CQYFMILPDELGNLEALETLIVDRTAMREV---PESLGQLSSLKILVLS--NIKRLPEYL 177
            +   +       L  +  + +    ++       +   +  L  + ++  NI  +P+ L
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190

Query: 178 --QLH-LQLPENGLEGIPE-YLRRSP--RKLTLDPNELSEI 212
              L  L L  N +  +    L+      KL L  N +S +
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 43/214 (20%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCN 79
           +KELP   +    L++L + +   +  +  S+F  L  +  +E+   P+  + + I +  
Sbjct: 112 LKELPE--KMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPL--KSSGIENGA 166

Query: 80  IDGGIGIE--RLASCRLVLEDCSSLQS-LPSSL---------------CMFKSLTSLEII 121
             G   +   R+A   +     +++   LP SL                  K L +L  +
Sbjct: 167 FQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 122 DCQYFMI--LPDE-LGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEY 176
              +  I  + +  L N   L  L ++   + +VP  L     ++++ L N  I  +   
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 177 LQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELS 210
                  P         Y       ++L  N + 
Sbjct: 282 ----DFCPPGYNTKKASY-----SGVSLFSNPVQ 306

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 20/203 (9%), Positives = 59/203 (29%), Gaps = 25/203 (12%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCN 79
           I  +  S       K +Y+ +   +  +          +Q +++    I      +    
Sbjct: 111 ISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEI----DTVNFAE 163

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEAL 139
           +      + L    L L+    +  +   +     L +L++   +    +  E  +   +
Sbjct: 164 LAASS--DTLEH--LNLQYNF-IYDVKGQVVF-AKLKTLDLSSNK-LAFMGPEFQSAAGV 216

Query: 140 ETLIVDRTAMREVPESLGQLSSLKILVLSN----IKRLPEYLQLHLQLPE------NGLE 189
             + +    +  + ++L    +L+   L         L ++   + ++          L 
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 190 GIPEYLRRSPRKLTLDPNELSEI 212
           G  E     P           ++
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDL 299

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 101 SLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDELGNLEALETLIVDRTAMREVPESLG 157
           SL+   +SL   +S  +++ +D        I   +L     LE L +    + E  + L 
Sbjct: 21  SLKQALASL--RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE 77

Query: 158 QLSSLKILVLSN--IKRLPEYLQL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
            LS+L+ L L+N  ++ L     +  L    N +  +     +  + + L  N+++ +
Sbjct: 78  SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 41/209 (19%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
            I E+  +    +  K   + D S L+   +S+ +   +++ +++S  P+    ++I + 
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPL----SQISAA 52

Query: 79  NIDGGIGIERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNL 136
           ++     +E L        + SS  L          +SL++L  +D     +   EL   
Sbjct: 53  DLAPFTKLELL--------NLSSNVLYETLD----LESLSTLRTLDLNNNYV--QELLVG 98

Query: 137 EALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEY-------LQLHLQLPENG 187
            ++ETL      +  V  S GQ    K + L+N  I  L +        +Q +L L  N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNE 155

Query: 188 LEGIP--EYLRRSP--RKLTLDPNELSEI 212
           ++ +   E    S     L L  N + ++
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 48/226 (21%)

Query: 3   FPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSI 61
            P     ++  L L    ++ L  ++    S L  L +   ++ +       KL  L+ +
Sbjct: 19  VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78

Query: 62  EISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEII 121
            + +  +    +++                                +     +LT L ++
Sbjct: 79  NLQHNEL----SQLS-----------------------------DKTFAFCTNLTELHLM 105

Query: 122 DCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSN------IKRLP 174
                 I  +     + L TL +    +      +  QL +L+ L+LSN           
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 175 EYLQL----HLQLPENGLEGI-PEYLRRSP--RKLTLDPNELSEIV 213
           +         L+L  N ++   P           L L+  +L   +
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 27/224 (12%)

Query: 13  TLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER 71
              +    + ++   S + L  L+ L + D  +    S+    L +L+ + +SN      
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT--- 365

Query: 72  FTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY----FM 127
              + +   +  + +       L L     +  + S    F  L  LE++D         
Sbjct: 366 --SLRTLTNETFVSLAHSPLHILNLTKN-KISKIESD--AFSWLGHLEVLDLGLNEIGQE 420

Query: 128 ILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSN--IKRLPEYLQLHLQLP 184
           +   E   LE +  + +      ++   S   + SL+ L+L    +K +         L 
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 185 --------ENGLEGIP-EYLRRSP--RKLTLDPNELSEIVKDGW 217
                    N +  I  + L        L L  N L+ + K   
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 28/201 (13%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
            +   PS  + L NL  L + + + + +I+  + + L+ L+ +++ +         +   
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN----NLARLWKH 522

Query: 79  NIDGGIGIERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQY---FMILPDEL 133
              GG          L + +  S     +P  +  FK L  L+IID        +     
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV--FKDLFELKIIDLGLNNLNTLPASVF 580

Query: 134 GNLEALETLIVDRTAMREVPESL--GQLSSLKILVLS---------NIKRLPEYLQLHLQ 182
            N  +L++L + +  +  V + +      +L  L +          +I     ++     
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640

Query: 183 ----LPENGLEGIPEYLRRSP 199
               L  + L   P +    P
Sbjct: 641 NIPELSSHYLCNTPPHYHGFP 661

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 21/200 (10%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
            +K     I   S+LKKL +    + E        +  L  + ++N  +        +  
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL----GPSLTEK 214

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSL---CMFKSLTSLEIIDCQYFMILPDELGNL 136
           +   +    + +  L L +   L +  ++      + +LT L++      ++  D    L
Sbjct: 215 LCLELANTSIRN--LSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 137 EALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYL 195
             LE   ++   ++ +   SL  L +++ L L               +    L  I ++ 
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-------FTKQSISLASLPKIDDFS 324

Query: 196 RRSPRKLT---LDPNELSEI 212
            +  + L    ++ N++  I
Sbjct: 325 FQWLKCLEHLNMEDNDIPGI 344

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 33/209 (15%), Positives = 77/209 (36%), Gaps = 32/209 (15%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84
             +    +NL +L+++  S+ +  ++   K K+L ++++S+       +           
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN----GLSSTKL------G 139

Query: 85  GIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDELGNLEALE 140
              +L + + L+L +   +Q+L S      + +SL+ ++          P     +  L 
Sbjct: 140 TQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 141 TLIVDRTAMRE-VPESLG---QLSSLKILVLSN--IKRLPEYLQLHLQLPE--------N 186
            L ++   +   + E L      +S++ L LSN  +        L L+           N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 187 GLEGI-PEYLRRSP--RKLTLDPNELSEI 212
            L  +  +     P      L+ N +  +
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 45/232 (19%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-----FERFTEIPSCN 79
             S   L  L+  ++   ++    S S+  L +++ + +               +I   +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 80  IDGGIGIER--LASCRL------VLEDCSSLQSL------------PSSLCMFKSLTSLE 119
                 +E   +    +      +     +L+ L             +   +  + + L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 120 IIDCQY---FMILPDELGNLEALETLIVDRTAMREV--PESLGQLSSLKILVLSN--IKR 172
           I++        I  D    L  LE L +    + +    +    L ++  + LS     +
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 173 LPEY-------LQLHLQLPENGLEGIPEYLR-----RSPRKLTLDPNELSEI 212
           L          LQ  L L    L+ +          R+   L L  N ++ I
Sbjct: 445 LTRNSFALVPSLQ-RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 19/197 (9%), Positives = 57/197 (28%), Gaps = 37/197 (18%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSCN 79
           I  +  S       K +Y+ +   +  +          +Q +++    I      +    
Sbjct: 111 ISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEI----DTVNFAE 163

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELGNLE 137
           +      + L    L L+    +  +   +        L+ +D        +  E  +  
Sbjct: 164 LAASS--DTLEH--LNLQYNF-IYDVKGQVV----FAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 138 ALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIP--EYL 195
            +  + +    +  + ++L    +L+   L                  NG       ++ 
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRG----------------NGFHCGTLRDFF 258

Query: 196 RRSPRKLTLDPNELSEI 212
            ++ R  T+    + ++
Sbjct: 259 SKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 101 SLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDELGNLEALETLIVDRTAMREVPESLG 157
           SL+   +SL   +S  +++ +D        I   +L     LE L +    + E  + L 
Sbjct: 21  SLKQALASL--RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE 77

Query: 158 QLSSLKILVLSN--IKRLPEYLQL-HLQLPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
            LS+L+ L L+N  ++ L     +  L    N +  +     +  + + L  N+++ +
Sbjct: 78  SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 41/209 (19%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
            I E+  +    +  K   + D S L+   +S+ +   +++ +++S  P+    ++I + 
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPL----SQISAA 52

Query: 79  NIDGGIGIERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNL 136
           ++     +E L        + SS  L          +SL++L  +D     +   EL   
Sbjct: 53  DLAPFTKLELL--------NLSSNVLYETLD----LESLSTLRTLDLNNNYV--QELLVG 98

Query: 137 EALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEY-------LQLHLQLPENG 187
            ++ETL      +  V  S GQ    K + L+N  I  L +        +Q +L L  N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNE 155

Query: 188 LEGIP--EYLRRSP--RKLTLDPNELSEI 212
           ++ +   E    S     L L  N + ++
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 35/205 (17%), Positives = 57/205 (27%), Gaps = 54/205 (26%)

Query: 24  LPSSIECLSNLKKLYIVDC--SMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID 81
           L  +      +  L +          I SS+  L  L  + I               N+ 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----------NLV 90

Query: 82  GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALET 141
           G I                     P ++     L  L I        +PD L  ++ L T
Sbjct: 91  GPI---------------------PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 142 LIVDRTAMR-EVPESLGQLSSLKILVLS-------------NIKRLPEYLQLHLQLPENG 187
           L     A+   +P S+  L +L  +                +  +L   + +      N 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS----RNR 185

Query: 188 LEG-IPEYLRR-SPRKLTLDPNELS 210
           L G IP      +   + L  N L 
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLE 210

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 50/200 (25%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLE-SISSSIFKLKSLQSIEISNCPIFERFT-EIPS 77
               +PSS+  L  L  LYI   + L   I  +I KL  L  + I++       +  IP 
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT----NVSGAIPD 119

Query: 78  CNIDGGIGIERLASCRLVLEDCSSLQSL-----------PSSLCMFKSLTSLEIIDCQYF 126
                 +                +L +L           P S+    +L  +     +  
Sbjct: 120 -----FLS------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 127 MILPDELGNLEALET-LIVDRTAMR-EVPESLGQLSSLKILVLSN----------IKRLP 174
             +PD  G+   L T + + R  +  ++P +   L +L  + LS                
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221

Query: 175 EYLQLHLQLPENGLEG-IPE 193
              Q  + L +N L   + +
Sbjct: 222 N-TQ-KIHLAKNSLAFDLGK 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 19/164 (11%)

Query: 23  ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSI-------------EISNCPIF 69
            +P  +  +  L  L     ++  ++  SI  L +L  I                +    
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 70  ERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQ---SLPSSLCMFKSLTSLEIIDCQYF 126
                I    + G I     A+  L   D S               K+   + +      
Sbjct: 176 FTSMTISRNRLTGKIPPT-FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 127 MILPDELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSN 169
             L  ++G  + L  L +    +   +P+ L QL  L  L +S 
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 35/227 (15%)

Query: 4   PSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEI 63
           P V      T + +++   ++P ++    + K L +    +    S S F    LQ +++
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 64  SNCPIFERFTEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
           S C        I             L+    L+L     +QSL      F  L+SL+ + 
Sbjct: 60  SRC----EIQTIEDGAYQS------LSHLSTLILTGN-PIQSLALGA--FSGLSSLQKLV 106

Query: 123 ---CQYFMILPDELGNLEALETLIVDRTAMREV--PESLGQLSSLKILVLS--NIKRLPE 175
                   +    +G+L+ L+ L V    ++    PE    L++L+ L LS   I+ +  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 176 ----------YLQLHLQLPENGLEGIPEYLRRSPR--KLTLDPNELS 210
                      L L L L  N +  I     +  R  KLTL  N  S
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 28/208 (13%), Positives = 65/208 (31%), Gaps = 37/208 (17%)

Query: 2   NFPSVTSCHVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQ 59
               + +  +    L  +     ++     CL+N+    +V  + +E +    +     Q
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSY-NFGWQ 307

Query: 60  SIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLE 119
            +E+ NC    +F + P+  +         +  RL         +          L SLE
Sbjct: 308 HLELVNC----KFGQFPTLKL--------KSLKRLTFTSNKGGNAFS-----EVDLPSLE 350

Query: 120 IID-----CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKR 172
            +D       +            +L+ L +    +  +  +   L  L+ L   +  +K+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 173 LPEY--------LQLHLQLPENGLEGIP 192
           + E+        L  +L +         
Sbjct: 411 MSEFSVFLSLRNLI-YLDISHTHTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 31/197 (15%)

Query: 25  PSSIECLSNLKKLYIV-DCSM--LESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID 81
            + +  L  +  L +  D S+  +  I    FK   L  + + N         +    I 
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS---LNVMKTCIQ 222

Query: 82  GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ------YFMILPDELGN 135
           G  G+E          +  +L+    S    + L +L I + +      Y   + D    
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 136 LEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYL 195
           L  + +                 L S+ I  + +        Q HL+L        P   
Sbjct: 281 LTNVSSF---------------SLVSVTIERVKDFSYNFG-WQ-HLELVNCKFGQFPTLK 323

Query: 196 RRSPRKLTLDPNELSEI 212
            +S ++LT   N+    
Sbjct: 324 LKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 51/192 (26%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84
             +   LS+L+KL  V+ ++    +  I  LK+L+ + +++                   
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN----LIQSFK-------- 140

Query: 85  GIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY---FMILPDELGNLEALE- 140
                               LP     F +LT+LE +D        I   +L  L  +  
Sbjct: 141 --------------------LPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 141 ---TLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIP--EYL 195
              +L +    M  +     +   L  L L N           L + +  ++G+   E  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN-------NFDSLNVMKTCIQGLAGLEVH 230

Query: 196 RRSPRKLTLDPN 207
           R    +   + N
Sbjct: 231 RLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 39/149 (26%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGI 84
            S    L NL  L I       + +     L SL+ ++++     E F            
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---------- 463

Query: 85  GIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELGNLEALET 141
                                     +F  L +L  +D   CQ   + P    +L +L+ 
Sbjct: 464 -------------------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 142 LIVDRTAMREV-PESLGQLSSLKILVLSN 169
           L +       +       L+SL++L  S 
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 4   PSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIE 62
           P    CH+  ++   +G+K +P  I    +   L + +   +  +    FK L+ L ++ 
Sbjct: 28  PFGCHCHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALV 84

Query: 63  ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
           + N  I    ++I          +++L    +     + L  +P +L    SL  L I D
Sbjct: 85  LVNNKI----SKIHEKAFSPLRKLQKL---YI---SKNHLVEIPPNL--PSSLVELRIHD 132

Query: 123 CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS----NIKRLPEYLQ 178
            +   +       L  +  + +    +       G    LK+  L      +  +P+ L 
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192

Query: 179 LHLQ---LPENGLEGIPE-YLRRSP--RKLTLDPNELSEI 212
             L    L  N ++ I    L R     +L L  N++  I
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 38/219 (17%), Positives = 70/219 (31%), Gaps = 54/219 (24%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCN 79
           + E+P ++   S+L +L I D   +  +   +F  L+++  IE+   P+           
Sbjct: 114 LVEIPPNL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN--------- 161

Query: 80  IDGGIGIERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSL-------EIIDCQYF---- 126
              G         +L     S   L  +P  L   ++L  L       + I+ +      
Sbjct: 162 --SGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYS 217

Query: 127 -------------MILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IK 171
                        MI    L  L  L  L +D   +  VP  L  L  L+++ L    I 
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277

Query: 172 RLPEYLQLHLQLPENGLEGIPEYLRRSPRKLTLDPNELS 210
           ++       +            Y       ++L  N + 
Sbjct: 278 KVGVNDFCPVGFGVKRA-----YYNG----ISLFNNPVP 307

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
                  S    ++L+ L +        +S++   L+ LQ ++  +  +      +   +
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTL----KRVTEFS 418

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY----FMILPDELGN 135
               +  E+L    L +   +  +       +F  LTSL  +           L +   N
Sbjct: 419 AFLSL--EKLLY--LDISYTN-TKIDFDG--IFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 136 LEALETLIVDRTAMREVPE-SLGQLSSLKILVLSN--IKRLPEYL-----QL-HLQLPEN 186
              L  L + +  + ++       L  L++L +S+  +  L          L  L    N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 187 GLEGIPEYLRRSPRKLT 203
            +E     L+  P+ L 
Sbjct: 532 RIETSKGILQHFPKSLA 548

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 28/190 (14%)

Query: 21  IKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN 79
           +K L   S    S L+ L +  C +      +   L  L ++ ++  PI          +
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGS 99

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY----FMILPDELGN 135
             G   +E      LV  +   L SL S       L +L+ ++  +       LP    N
Sbjct: 100 FSGLTSLE-----NLVAVET-KLASLESF--PIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 136 LEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYL 195
           L  L  + +              + ++ +  L  ++  P  + L L +  N ++ I +  
Sbjct: 152 LTNLVHVDLSYN----------YIQTITVNDLQFLRENP-QVNLSLDMSLNPIDFIQDQA 200

Query: 196 RRSPRKLTLD 205
            +  +   L 
Sbjct: 201 FQGIKLHELT 210

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)

Query: 23  ELPSSIECLSNLKKLYIVDCSMLESISSSIFKL-----KSLQSIEISNCPIFERFTEIPS 77
           +LP+    L+NL  + +     +++I+ +  +      +   S+++S  PI      I  
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPI----DFIQD 198

Query: 78  CNIDGGIGIERL---------ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI 128
                GI +  L            +  L++ + L      L  FK   +LEI +      
Sbjct: 199 -QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 129 LPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL----HLQ 182
           L     ++   E  +       +       L+++  + L+   IK L +  +      L 
Sbjct: 258 LC----DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313

Query: 183 LPENGLEGIPEYLRRSPRKLTLDPNELSEI 212
           +    L+  P       + LTL  N+ S  
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 46/214 (21%)

Query: 3   FPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSI 61
              +    +    L              CL+N+  + +   S ++ +          QS+
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHF-KWQSL 312

Query: 62  EISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSL------PSSLCMFKSL 115
            I  C    +  + P+ +                      L+SL       S      +L
Sbjct: 313 SIIRC----QLKQFPTLD-------------------LPFLKSLTLTMNKGSISFKKVAL 349

Query: 116 TSLEIID-----CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN- 169
            SL  +D       +            +L  L +       +  +   L  L+ L   + 
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

Query: 170 -IKRLPEYLQL-------HLQLPENGLEGIPEYL 195
            +KR+ E+          +L +     +   + +
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/228 (12%), Positives = 58/228 (25%), Gaps = 42/228 (18%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFE--RFTEIPS 77
           I  +         L +L +       +I  +  + L  L    +      +         
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 78  CNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNL 136
             ++G      L    +     +        +  F  L ++  +      I   +++   
Sbjct: 253 SIMEG------LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306

Query: 137 EALETLIVDRTAMREVP--------------------ESLGQLSSLKILVLSN--IKRLP 174
              ++L + R  +++ P                         L SL  L LS   +    
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366

Query: 175 E-------YLQL-HLQLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
                      L HL L  NG   +          + L    + L  +
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 42/217 (19%)

Query: 25  PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFE-------------- 70
           P S   L++L+ L  V+  +    S  I +L +L+ + +++  I                
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 71  -------RFTEIPSCNIDGGIGIERLASCRLVLE--DCS--SLQSLPSSLCMFKSLTSLE 119
                      I   ++        L     V    D S   +  +         L  L 
Sbjct: 157 HVDLSYNYIQTITVNDLQF------LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 120 IIDCQ-YFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQ 178
           +        I+   L NL  L          R +        +L+I   S ++ L +   
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVH-------RLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 179 LHLQLPENGLEGIPEYLRRSP---RKLTLDPNELSEI 212
              +L                     ++L    +  +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 39/207 (18%), Positives = 69/207 (33%), Gaps = 38/207 (18%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
           + I+ ++ L +L   DCS   L  +  S   L  L ++      +     EI   +    
Sbjct: 225 TEID-VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDL----LEIDLTHN--- 274

Query: 84  IGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLI 143
                        E C  ++ L          T L ++DCQ   I   +L     L  L 
Sbjct: 275 -----TQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324

Query: 144 VDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLH------------LQLPENGLE 189
           ++ T + E+   +   + LK L   N  I+      ++             + +P+  L 
Sbjct: 325 LNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 190 GIPEYLRRSPRKLTLDPNELSEIVKDG 216
                +  SP  L    N ++    DG
Sbjct: 383 NNSLTIAVSPDLLDQFGNPMNIEPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 31/207 (14%), Positives = 62/207 (29%), Gaps = 33/207 (15%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
           + +  +  L  L  + C+   + ++   + +  +L  +   +  +    T +    +   
Sbjct: 55  TDMTGIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKL----TNLD---VTPL 105

Query: 84  IGIERLASCR------LVLEDCSSLQSLPSSLCMFKSL-----TSLEIIDCQYFMIL-PD 131
             +  L +C       L +     L  L  +      +     T L  +DC     +   
Sbjct: 106 TKLTYL-NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL 164

Query: 132 ELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLP----EYLQLHLQLPE 185
           ++     L TL      + E+   + Q   L  L      I +L       L   L    
Sbjct: 165 DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLT-FLDCSS 221

Query: 186 NGLEGIPEYLRRSPRKLTLDPNELSEI 212
           N L  I               N L+E+
Sbjct: 222 NKLTEIDVTPLTQLTYFDCSVNPLTEL 248

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 37/201 (18%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI 80
           +  L      ++ L KL  ++C   +     + +   L  +  +   +    TEI   + 
Sbjct: 97  LTNLD-----VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTL----TEIDVSHN 147

Query: 81  DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE 140
                       +L   DC   + +  +       T L  +DC +  I   ++   + L 
Sbjct: 148 T-----------QLTELDCHLNKKI--TKLDVTPQTQLTTLDCSFNKITELDVSQNKLLN 194

Query: 141 TLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLP-------EYLQLHLQLPENGLEGI 191
            L  D   + ++   L Q   L  L  S+  +  +         Y         N L  +
Sbjct: 195 RLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCS----VNPLTEL 248

Query: 192 PEYLRRSPRKLTLDPNELSEI 212
                     L     +L EI
Sbjct: 249 DVSTLSKLTTLHCIQTDLLEI 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 31/190 (16%)

Query: 32  SNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS 91
            N          M  + + S  +L +L S++  N  I    T++         GIE+L  
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI----TDMT--------GIEKLTG 65

Query: 92  CRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM 149
             L    C+S  + +L          T+L  + C    +   ++  L  L  L  D   +
Sbjct: 66  --LTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118

Query: 150 REVPESLGQLSSLKILVLSN--IKRLP--EYLQL-HLQLPENGLEGIPEYLRRSP--RKL 202
            ++  S  Q   L  L  +   +  +      QL  L    N      + +        L
Sbjct: 119 TKLDVS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTL 175

Query: 203 TLDPNELSEI 212
               N+++E+
Sbjct: 176 DCSFNKITEL 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 30/226 (13%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPI--FERFTEIP 76
           + EL SS    L  +  + +     +  I    FK L+ LQ++++ +  +        IP
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 77  ----SCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILP 130
               S N    +    L +  + L + + L++L   L     +  L+I+      F    
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSE-NRLENLDI-LYFLLRVPHLQILILNQNRFSSCS 442

Query: 131 DE--LGNLEALETLIVDRTAMREVPES------LGQLSSLKILVLSN--IKRLPEYL--- 177
            +       +LE L +    ++   E+         LS L++L L++  +  LP  +   
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 178 --QL-HLQLPENGLEGIPEY-LRRSPRKLTLDPNELSEIVKDGWMK 219
              L  L L  N L  +    L  +   L +  N+L     D ++ 
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS 548

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 45/224 (20%), Positives = 77/224 (34%), Gaps = 48/224 (21%)

Query: 3   FPSVTSCHVYTLELVKVGIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQS 60
           F  +    V  L+L    +  L S + E L +LK L +     +  I+   F  L +LQ 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQV 318

Query: 61  IEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEI 120
           + +S   +     E+ S                      S+   LP        +  +++
Sbjct: 319 LNLSYNLL----GELYS----------------------SNFYGLP-------KVAYIDL 345

Query: 121 IDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS--NIKRLPE-YL 177
                 +I       LE L+TL +   A+  +      + S+  + LS   +  LP+  L
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINL 401

Query: 178 QL-HLQLPENGLEGIPEYLRRSP----RKLTLDPNELSEIVKDG 216
               + L EN LE +            + L L+ N  S    D 
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 44/224 (19%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
            + ++P     L+  ++L +     + ++++S F  L+ LQ +E+ +             
Sbjct: 15  NLTQVPQV---LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYT--------PL 62

Query: 79  NIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY-----FMILPDE 132
            ID       L + R L L     +  L      F+ L  L  +   +      ++    
Sbjct: 63  TIDKEA-FRNLPNLRILDLGSS-KIYFLHPDA--FQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 133 LGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSN--IKRLP------------EY 176
             NL+AL  L + +  +R +    S G+L+SLK +  S+  I  +              +
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 177 LQLH----LQLPENGLEGIPEYLR-RSPRKLTLDPNELSEIVKD 215
             L                    R      L +  N  +  +  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 30/152 (19%)

Query: 77  SCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNL 136
           SC+ DG     R+A  R       +L  +P  L    +   L +       +       L
Sbjct: 1   SCSFDG-----RIAFYRF-----CNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFL 47

Query: 137 EALETLIVD--RTAMREVPESLGQLSSLKILVLSN--IKRLPE-------YLQLHLQLPE 185
           E L+ L +    T +    E+   L +L+IL L +  I  L         +L   L+L  
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF-ELRLYF 106

Query: 186 NGLEGI---PEYLRRSP--RKLTLDPNELSEI 212
            GL        Y R      +L L  N++  +
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 42/218 (19%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF 69
           +   +   K  + +   +   L  +  L       + +I   +  L +L  +E+ +  I 
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTG-VTTI-EGVQYLNNLIGLELKDNQI- 75

Query: 70  ERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDC 123
              T++                    L++ + +  L        ++     L S++ +D 
Sbjct: 76  ---TDLAP------------------LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 124 QYFMIL-PDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL- 179
               I     L  L  L+ L +D   +  +   L  L++L+ L + N  +  L     L 
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLS 173

Query: 180 ---HLQLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
               L+  +N +  I   L   P   ++ L  N++S++
Sbjct: 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 26  SSIECLSNLKKLYIVDCSM--LESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
           + +  L NL K+  ++ S   L+++ S+I  L+S++++++++  I    T++        
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQI----TDVTPLAGLSN 130

Query: 84  IGIERLASCRLV----LEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMI--LPD 131
           + +  L   ++     L   ++LQ L       S L    +L+ L  +      I  +  
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 132 ELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLHLQLP 184
            L +L  L  + +    + +V   L   S+L I+ L+N  I   P +   +L +P
Sbjct: 191 -LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 28/192 (14%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCN 79
           +  + S+   L  L+ L     ++ +    S+F  L++L  ++IS+           +  
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGI 145

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELGNL 136
            +G   +E      L +   S  ++    +  F  L +L  +D   CQ   + P    +L
Sbjct: 146 FNGLSSLE-----VLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 137 EALETLIVDRTAMREVPES-LGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYL 195
            +L+ L +       +       L+SL++L  S          +     +  L+  P  L
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-------HIM-TSKKQELQHFPSSL 250

Query: 196 RRSPRKLTLDPN 207
                 L L  N
Sbjct: 251 AF----LNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 21/133 (15%)

Query: 102 LQSLPSSLCMFKSLTSLEIIDCQY-----FMILPDELGNLEALETLIVDRTAMREVPESL 156
           LQSLP    +F  LT L  +                     +L+ L +    +  +  + 
Sbjct: 40  LQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97

Query: 157 GQLSSLKILVLSN--IKRLPEY--------LQLHLQLPENGLEGIPEY-LRRSP--RKLT 203
             L  L+ L   +  +K++ E+        L  +L +                     L 
Sbjct: 98  LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 204 LDPNELSEIVKDG 216
           +  N   E     
Sbjct: 157 MAGNSFQENFLPD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 18/159 (11%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF 72
            + L  + + +L + IE   N+K L I +     +  + I  L +L+ + I    +    
Sbjct: 48  YITLANINVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDV---- 100

Query: 73  TEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPD- 131
           T     N+ G   +  L        D S      S L    +L  +  ID  Y   + D 
Sbjct: 101 TSDKIPNLSGLTSLTLL--------DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 132 -ELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
             L  L  L++L +    + +    +     L  L   +
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 36/218 (16%), Positives = 81/218 (37%), Gaps = 35/218 (16%)

Query: 8   SCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNC 66
           S     +   +     +P  I   +  + L +     +++++   F     L+ +E++  
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN 66

Query: 67  PIFERFTEIPSCNIDGGIGIE--RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID-- 122
            +    + +     +    +    L S RL        + +P    +F  L++L  +D  
Sbjct: 67  IV----SAVEPGAFNNLFNLRTLGLRSNRL--------KLIPLG--VFTGLSNLTKLDIS 112

Query: 123 -CQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLS--NIKRLPEY-- 176
             +  ++L     +L  L++L V    +  +   +   L+SL+ L L   N+  +P    
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172

Query: 177 -----LQLHLQLPENGLEGIPEY-LRRSPRKLTLDPNE 208
                L   L+L    +  I +Y  +R  R   L+ + 
Sbjct: 173 SHLHGLI-VLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 13  TLELVKVGIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER 71
            L L  + I  +     + L  LK L I     L++++ +     +L S+ I++C +   
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--- 236

Query: 72  FTEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFM 127
            T +P   +        L   R L L   + + ++  S  M   L  L+ I     Q  +
Sbjct: 237 -TAVPYLAVRH------LVYLRFLNLSY-NPISTIEGS--MLHELLRLQEIQLVGGQLAV 286

Query: 128 ILPDELGNLEALETLIVDRTAMREVPESL-GQLSSLKILVLSN 169
           + P     L  L  L V    +  + ES+   + +L+ L+L +
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 30/219 (13%)

Query: 1   MNFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDC--SMLESISSSIFKLKSL 58
             FP++    +  L           S ++ L +L+ L +     S     S S F   SL
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 59  QSIEISNCPIFERFTEIPSCNIDGGIGIERLASCR-LVLEDCSSLQSLPSSLCMFKSLTS 117
           + +++S   +      + S           L     L  +  + L+ +     +F SL +
Sbjct: 376 KYLDLSFNGV----ITMSS-------NFLGLEQLEHLDFQHSN-LKQMSEF-SVFLSLRN 422

Query: 118 LEIID---CQYFMILPDELGNLEALETLIVDRTAMREV--PESLGQLSSLKILVLSN--I 170
           L  +D       +        L +LE L +   + +E   P+   +L +L  L LS   +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 171 KRLPEYL-----QL-HLQLPENGLEGIPEYLRRSPRKLT 203
           ++L          L  L +  N L+ +P+ +      L 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 30/154 (19%), Positives = 64/154 (41%), Gaps = 16/154 (10%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCN 79
           +  + S+   L  L+ L     ++ +    S+F  L++L  ++IS+           +  
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGI 440

Query: 80  IDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELGNL 136
            +G   +E L      +   S  ++    +  F  L +L  +D   CQ   + P    +L
Sbjct: 441 FNGLSSLEVL-----KMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 137 EALETLIVDRTAMREVPES-LGQLSSLKILVLSN 169
            +L+ L +    ++ VP+    +L+SL+ + L  
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 58/211 (27%)

Query: 21  IKELPS-SIECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSC 78
           ++ L S S      L+ L +  C  +++I    +  L  L ++ ++  P           
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP----------- 87

Query: 79  NIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELGN 135
                                  +QSL      F  L+SL+ +         +    +G+
Sbjct: 88  -----------------------IQSLALGA--FSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 136 LEALETLIVDRTAMREV--PESLGQLSSLKILVLSN--IKRLPE----------YLQLHL 181
           L+ L+ L V    ++    PE    L++L+ L LS+  I+ +             L L L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 182 QLPENGLEGIPEYLRRSP--RKLTLDPNELS 210
            L  N +  I     +     KLTL  N  S
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 31/214 (14%)

Query: 30  CLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88
           C   +++  +            +F  L ++ S  + +  I      +   + + G     
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI----ERVKDFSYNFGWQHLE 310

Query: 89  LASCRLVLEDCSSLQSLP---------SSLCMFKSLTSLEIID-----CQYFMILPDELG 134
           L +C+        L+SL           +      L SLE +D       +         
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 135 NLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLH-------LQLPE 185
              +L+ L +    +  +  +   L  L+ L   +  +K++ E+           L +  
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 186 NGLEGIPEYLRRSPRKLT---LDPNELSEIVKDG 216
                    +      L    +  N   E     
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 102 LQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQL 159
           L+ L S S   F  L  L++  C+   I      +L  L TLI+    ++ +   +   L
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 160 SSLKILVLSN--IKRLPEYL-----QL-HLQLPENGLEGI--PEYLRRSP--RKLTLDPN 207
           SSL+ LV     +  L  +       L  L +  N ++    PEY         L L  N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 208 ELSEI 212
           ++  I
Sbjct: 160 KIQSI 164

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 32/209 (15%)

Query: 13  TLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFE 70
           TL+L++  ++ +PS +   L N+ ++Y+     L+ + S  F  L  +  IEI N     
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-- 92

Query: 71  RFTEIPSCNIDGGI--GIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI 128
             T I            +  L    L + +   L+  P  L    S     I++      
Sbjct: 93  -LTYIDP-----DALKELPLLK--FLGIFNT-GLKMFP-DLTKVYSTDIFFILEITDNPY 142

Query: 129 L----PDELGNLEA-LETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQL 183
           +     +    L     TL +       V       + L  + L+  K L         +
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV-------I 195

Query: 184 PENGLEGIPEYLRRSPRKLTLDPNELSEI 212
            ++   G    +   P  L +    ++ +
Sbjct: 196 DKDAFGG----VYSGPSLLDVSQTSVTAL 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
           I+ +PS     + +L++L + +   L  IS   F+ L +L+ + ++ C +     EIP+ 
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL----REIPN- 202

Query: 79  NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELG 134
                  +  L     L L     L ++      F+ L  L+ +     Q  +I  +   
Sbjct: 203 -------LTPLIKLDELDLSGN-HLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 135 NLEALETLIVDRTAMREVPES-LGQLSSLKILVLSN 169
           NL++L  + +    +  +P      L  L+ + L +
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 19/131 (14%)

Query: 98  DCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE- 154
            C    L+ +P  +    +   L + + Q  +I  +   +L  LE L + R  +R +   
Sbjct: 49  ICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 155 SLGQLSSLKILVLSN--IKRLPE-------YLQLHLQLPENGLEGIPEYLRRSPRKLTL- 204
           +   L++L  L L +  +  +P         L+  L L  N +E IP Y       L   
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYAFNRIPSLRRL 165

Query: 205 ---DPNELSEI 212
              +   LS I
Sbjct: 166 DLGELKRLSYI 176

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 21  IKELPSSI--ECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPS 77
            K L  +     L+ L+ L + +      I    F  L  L+ +EI    +         
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL----QSYEP 191

Query: 78  CNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY-----------F 126
            ++     I+ ++   L+L        L          +S+E ++ +             
Sbjct: 192 KSLKS---IQNVS--HLILHMKQ-HILLLEIF--VDVTSSVECLELRDTDLDTFHFSELS 243

Query: 127 MILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPE 175
               + L        + +   ++ +V + L Q+S L  L  S   +K +P+
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 16/126 (12%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 21  IKELPSSIECLSNLKKLYIVDCSM--LESISSSIF-KLKSLQSIEISNCPIFE-RFTEIP 76
           ++      + L +++ +  +   M     +         S++ +E+ +  +    F+E+ 
Sbjct: 186 LQSYEP--KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 77  SCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNL 136
           +   +  I      + ++      SL  +   L     L  LE    Q   +       L
Sbjct: 244 TGETNSLIKKFTFRNVKI---TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300

Query: 137 EALETL 142
            +L+ +
Sbjct: 301 TSLQKI 306

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 28/227 (12%)

Query: 3   FPSVTSCHVYTLELVKVGIKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQS 60
            PS    +   L  V   ++ +         +L+K+ I    +LE I + +F  L  L  
Sbjct: 24  IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83

Query: 61  IEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEI 120
           I I           I     +    +  L    L++ +   ++ LP             +
Sbjct: 84  IRIEKAN---NLLYINP---EAFQNLPNLQY--LLISNT-GIKHLPDV--HKIHSLQKVL 132

Query: 121 ID----CQYFMILPDELGNLEA-LETLIVDRTAMREVPES-LGQLSSLKILVLSN--IKR 172
           +D         I  +    L      L +++  ++E+  S        ++ +  N  ++ 
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192

Query: 173 LPEYL------QLHLQLPENGLEGIPEYLRRSPRKLT-LDPNELSEI 212
           LP  +       + L +    +  +P Y   + +KL       L ++
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 37/172 (21%)

Query: 31  LSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89
           L  L ++ I   + L  I+   F+ L +LQ + ISN  I      +P         I  L
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI----KHLPD-----VHKIHSL 128

Query: 90  ASCRLVLEDCSSLQSLPS----SLC-------------------MFKSLTSLEIIDCQY- 125
               L ++D  ++ ++       L                     F      E+      
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 126 --FMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLP 174
               +  D          L + RT +  +P   L  L  L+     N+K+LP
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP 240

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSC 78
           I+ +PS     + +L +L + +   LE IS   F+ L +L+ + +  C I     ++P+ 
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI----KDMPN- 213

Query: 79  NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIID---CQYFMILPDELG 134
                  +  L     L +   +    +      F  L+SL+ +     Q  +I  +   
Sbjct: 214 -------LTPLVGLEELEMSG-NHFPEIRPG--SFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 135 NLEALETLIVDRTAMREVPES-LGQLSSLKILVLSN 169
            L +L  L +    +  +P      L  L  L L +
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 98  DCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE- 154
            C+   L  +P  +    +   L +++    MI  D   +L  LE L + R ++R++   
Sbjct: 60  VCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117

Query: 155 SLGQLSSLKILVLSN--IKRLPE-------YLQLHLQLPENGLEGIPEYLRRSPRKLT-- 203
           +   L+SL  L L +  +  +P         L+  L L  N +E IP Y       L   
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR-ELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 204 --LDPNELSEI 212
              +  +L  I
Sbjct: 177 DLGELKKLEYI 187

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 24/209 (11%)

Query: 31  LSNLKKLYIVDCSMLESISSSIFKL--KSLQSIEISNCPIFERFTEIPSCNIDGGIGIER 88
           +S L++L + +  +  +    + +     L  + + N     R   +         G++ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 89  LASCRLVLEDCSSLQSLPSSLCMFKSLTSLEI----IDCQYFMILPDELGNLEALETLIV 144
           L+     +    SL      + +F +L++L++       +  +I          L+ L +
Sbjct: 154 LS-----IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 145 DRTAMR----EVPESLGQLSSLKILVLS--NIKRLPEYLQL-------HLQLPENGLEGI 191
               M                L+ L LS  +++                L L   GL+ +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 192 PEYLRRSPRKLTLDPNELSEIVKDGWMKQ 220
           P+ L      L L  N L        + Q
Sbjct: 269 PKGLPAKLSVLDLSYNRLDRNPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 31  LSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLA 90
              LK L I     L      +    +L ++++S+ P       I +        ++ LA
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 91  SCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDELG--NLEALETLIVDR 146
                +E   +   + S+L    +   L+ +D  +                 L +L +  
Sbjct: 208 LRNAGME---TPSGVCSAL--AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 147 TAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL-HLQ 182
           T +++VP+ L     L +L LS   + R P   +L  + 
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDELPQVG 299

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 19/152 (12%)

Query: 31  LSNLKKLYIVDCSMLESISSSIFK-LKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL 89
           L+ L++L + D + L S+  + F  L  L ++ +  C +     E+      G   ++  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL----QELGPGLFRGLAALQ-- 132

Query: 90  ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQY--FMILPDE-LGNLEALETLIVDR 146
               L L+D  +LQ+LP     F+ L +L  +         +P+     L +L+ L++ +
Sbjct: 133 ---YLYLQDN-ALQALPDDT--FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 147 TAMREVPE-SLGQLSSLKILVLSN--IKRLPE 175
             +  V   +   L  L  L L    +  LP 
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 32/210 (15%)

Query: 2   NFPSVTSCHVYTLELVKVGIKELPSSIEC----LSNLKKLYIVDCSMLESISSSIF-KLK 56
                +   +  L + +V                SN+        S    +      K+ 
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN-FTVSGTRMVHMLCPSKIS 324

Query: 57  SLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASC-RLVLEDCSSLQSLPSSLCMFKSL 115
               ++ SN       T+    N         L     L+L   + L+ L     M   +
Sbjct: 325 PFLHLDFSNN----LLTDTVFENCGH------LTELETLIL-QMNQLKELSKIAEMTTQM 373

Query: 116 TSLEIIDCQY----FMILPDELGNLEALETLIVDRTAMRE-VPESLGQLSSLKILVLSN- 169
            SL+ +D       +     +    ++L +L +    + + +   L     +K+L L + 
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 170 -IKRLPEYL----QL-HLQLPENGLEGIPE 193
            IK +P+ +     L  L +  N L+ +P+
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPD 461

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 33/153 (21%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
            S++ +  L  +  +  +   L  I   +  LK+L  + +    I     ++ S      
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKI----KDLSS------ 104

Query: 84  IGIERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMIL-PDELGNL 136
                       L+D   L+SL       S +     L  LE +      I     L  L
Sbjct: 105 ------------LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL 152

Query: 137 EALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
             L+TL ++   + ++   L  L+ L+ L LS 
Sbjct: 153 TKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 42/204 (20%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
             I       +    +     +     +  +L S+  I  +N  I          ++ G 
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDI---------KSVQG- 60

Query: 84  IGIERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMILP-DELGNL 136
                       ++   ++  L       + +    +L +L  +      I     L +L
Sbjct: 61  ------------IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL 108

Query: 137 EALETLIVDRTAMREVPESLGQLSSLKILVLSN-----IKRLPEYLQLH-LQLPENGLEG 190
           + L++L ++   + ++   L  L  L+ L L N     I  L    +L  L L +N +  
Sbjct: 109 KKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 167

Query: 191 IPEYLRRSP--RKLTLDPNELSEI 212
           I   L      + L L  N +S++
Sbjct: 168 IVP-LAGLTKLQNLYLSKNHISDL 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 46/220 (20%)

Query: 10  HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF 69
                 L K  + +   +   L+++ ++   +   ++S+   I  L ++  + ++   + 
Sbjct: 25  ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKL- 80

Query: 70  ERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLP---------SSLCMFKSLTSLEI 120
              T+I                    L +  +L  L          SSL   K L SL +
Sbjct: 81  ---TDIKP------------------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 121 IDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQ 178
                  I  + L +L  LE+L +    + ++   L +L+ L  L L +  I  +     
Sbjct: 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAG 176

Query: 179 L----HLQLPENGLEGIPEYLRRSP--RKLTLDPNELSEI 212
           L    +L L +N +  +   L        L L   E    
Sbjct: 177 LTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 25/178 (14%)

Query: 26  SSIECLSNLKKLYIVDCSM--LESISSSIFKLKSLQSIEISNCPI-----FERFTEIPSC 78
            S++ +  L  +  +  +   L  I   +  LK+L  + +    +      +   ++ S 
Sbjct: 59  KSVQGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 79  NIDGGIGIERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMI--LP 130
           ++    GI  +      L     L+SL       + + +   LT L+ +  +   I  + 
Sbjct: 118 SL-EHNGISDING----LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172

Query: 131 DELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLHLQLPEN 186
             L  L  L+ L + +  + ++  +L  L +L +L L +      P   Q +L +P  
Sbjct: 173 P-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 32/188 (17%)

Query: 45  LESISSSIF-KLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQ 103
           L  + S  F     LQ +++S C I      I          +  L    L     + +Q
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTL---IL---TGNPIQ 89

Query: 104 SLPSSLCMFKSLTSLE---IIDCQYFMILPDELGNLEALETLIVDRTAMREVPES--LGQ 158
           SL      F  L+SL+    ++     +    +G+L+ L+ L V    ++          
Sbjct: 90  SLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 LSSLKILVLSN--IKRLP----------EYLQLHLQLPENGLEGIPEYLRRSPR--KLTL 204
           L++L+ L LS+  I+ +             L L L L  N +  I     +  R  +L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 205 DPNELSEI 212
           D N+L  +
Sbjct: 208 DTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 23/159 (14%)

Query: 21  IKELPSSI-ECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSC 78
           I+ L       LS+L+KL  V+ + L S+ +     LK+L+ + +++             
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH----NLIQSFKLP 142

Query: 79  NI-DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM------ILPD 131
                   +E      L L     +QS+  +    + L  + +++    +       +  
Sbjct: 143 EYFSNLTNLE-----HLDLSSN-KIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 132 ELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSN 169
                  L+ L +D   ++ VP+    +L+SL+ + L  
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 39/211 (18%), Positives = 62/211 (29%), Gaps = 24/211 (11%)

Query: 12  YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER 71
           +  EL       L S +E    L++L   +   L +I   +  L  L   E      F  
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFST 410

Query: 72  FTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPD 131
              +          +         +            L   K LT L             
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLC------------ 457

Query: 132 ELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLH----LQLPE 185
            L  L  +  L +    +R +P +L  L  L++L  S+  ++ +     L     L L  
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517

Query: 186 NGLEGIPE--YLRRSP--RKLTLDPNELSEI 212
           N L+       L   P    L L  N L + 
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 18/174 (10%)

Query: 26  SSIECLSNLKKLYIVDCS--MLESISSSIFKLKSLQSIEISNCPI-----FERFTEIPSC 78
           + +     L  +   +     ++S+ + +    +L+ + +S+  I      +  T++   
Sbjct: 32  TDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEEL 90

Query: 79  NIDG-GI-GIERLASCRLVLEDCSS--LQSLPSSLCMFKSLTSLEIIDCQYFMILPDELG 134
           +++   +  +  + S  L      +  L+    SL   K+L  L I + +   I    LG
Sbjct: 91  SVNRNRLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--VMLG 147

Query: 135 NLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQLHLQLPEN 186
            L  LE L +    +      L +L  +  + L+       P   Q  L +   
Sbjct: 148 FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 38/182 (20%)

Query: 26  SSIECLSNLKKLYIVDCSM--LESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG 83
           + +     L      +     +  +  S  +L  +Q+    N  I          ++ G 
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNI---------QSLAG- 58

Query: 84  IGIERLASCRLVLEDCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMILPDELGNLE 137
                       ++  ++L+ L       S L   K LT LE +      +         
Sbjct: 59  ------------MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA 106

Query: 138 ALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL----HLQLPENGLEGI 191
            L  L +D   +R+  +SL  L +L+IL + N  +K +     L     L L  N +   
Sbjct: 107 CLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165

Query: 192 PE 193
             
Sbjct: 166 GG 167

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 71/242 (29%)

Query: 20  GIKELPSSIECLSNLKKLYIVDCSM----LESISSSIFKLKSLQSIEISNCPIFERFTEI 75
              EL   +  L   + + + DC +     + ISS++    +L  + + +  +       
Sbjct: 19  RWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL------- 68

Query: 76  PSCNIDGGIGIERLASC---------RLVLEDCS----SLQSLPSSLCMFKSLTSLEIID 122
                 G +G+  +            +L L++C         L S+L    +L  L + D
Sbjct: 69  ------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 123 CQYFMILPDE---------LGNLEALETLIVDR-----TAMREVPESLGQLSSLKILVLS 168
                 L D          L     LE L ++       +   +   L      K L +S
Sbjct: 123 NL----LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 169 N-------IKRLPEYLQ--------LHL---QLPENGLEGIPEYLRRSP--RKLTLDPNE 208
           N       ++ L + L+        L L    +  +    +   +      R+L L  N+
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 209 LS 210
           L 
Sbjct: 239 LG 240

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 33  NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASC 92
           N+K L I D   +  +        S   +  +       FT+              L   
Sbjct: 332 NIKMLSISDTPFIHMVCPPS--PSSFTFLNFTQN----VFTDSVFQGCS------TLKRL 379

Query: 93  RLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNL----EALETLIVDRTA 148
           + ++   + L++      M K+++SLE +D     +            E++  L +    
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 149 MRE-VPESLGQLSSLKILVLSN--IKRLPEYL----QL-HLQLPENGLEGIPE 193
           +   V   L     +K+L L N  I  +P+ +     L  L +  N L+ +P+
Sbjct: 440 LTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.69
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.65
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.21
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.96
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.46
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.01

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.2e-22  Score=196.07  Aligned_cols=215  Identities=17%  Similarity=0.231  Sum_probs=171.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +++.|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|. +..+|          ..+..+
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp----------~~l~~l  149 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALP----------ASIASL  149 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCC----------GGGGGC
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCc----------HHHhcC
Confidence            789999999999999999999999999999998766 889889999999999999964 44777          578889


Q ss_pred             cc-ceEEcCCCCCCCCCcccccC---------CCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCM---------FKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~---------l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                      ++ +.|++++|...+.+|..+..         +++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..++.+
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l  228 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL  228 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence            99 99999999999999987654         999999999999876 88888999999999999999999999889999


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--cCcCccccccccccccccCCcccCCceeEecCC
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--LDPNELSEIVKDGWMKQSFDGNIGITKSMYFPG  236 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--lp~~~L~~l~~~~~~~n~~~~~~~~~~~~~~~g  236 (417)
                      ++|+.|+|++|.... .      +|..+..+ .|+.|++++|.+.  +|.. +..+..+..+.  +        ..+---
T Consensus       229 ~~L~~L~Ls~n~~~~-~------~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~--L--------~~n~~~  290 (328)
T 4fcg_A          229 PKLEELDLRGCTALR-N------YPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLD--L--------RGCVNL  290 (328)
T ss_dssp             TTCCEEECTTCTTCC-B------CCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEE--C--------TTCTTC
T ss_pred             CCCCEEECcCCcchh-h------hHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEe--C--------CCCCch
Confidence            999999999998444 5      88888888 9999999999855  6654 33333221110  0        001112


Q ss_pred             CCCCCCcccCCCCceEEEEeC
Q 014835          237 KEIPKWFRYQSMGSSVNLKKR  257 (417)
Q Consensus       237 ~~iP~w~~~~~~g~~~~i~l~  257 (417)
                      ..+|+|+.....-  ..+.+|
T Consensus       291 ~~iP~~l~~L~~L--~~l~l~  309 (328)
T 4fcg_A          291 SRLPSLIAQLPAN--CIILVP  309 (328)
T ss_dssp             CCCCGGGGGSCTT--CEEECC
T ss_pred             hhccHHHhhccCc--eEEeCC
Confidence            4688888776443  334454

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.8e-22  Score=194.89  Aligned_cols=199  Identities=24%  Similarity=0.309  Sum_probs=167.5

Q ss_pred             CCCCccc-C-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCC-cc
Q 014835            2 NFPSVTS-C-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIP-SC   78 (417)
Q Consensus         2 ~lP~~~~-~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~-~l   78 (417)
                      .+|+.+. . +|++|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|+.++.+|.-- ..
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            4676444 4 999999999999999999999999999999998766 889889999999999999999998888411 01


Q ss_pred             ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcchhc
Q 014835           79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVPESL  156 (417)
Q Consensus        79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l  156 (417)
                      .+.  ..+..+++ +.|++++|.+. .+|..+..+++|++|++++|.+.+ +|..++.+++|++|++++|.+ +.+|..+
T Consensus       174 ~~~--~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~  249 (328)
T 4fcg_A          174 DAS--GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF  249 (328)
T ss_dssp             C-C--CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred             cch--hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh
Confidence            111  23556899 99999999766 899999999999999999999774 777899999999999999887 7889999


Q ss_pred             cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--cCcCcccccc
Q 014835          157 GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--LDPNELSEIV  213 (417)
Q Consensus       157 ~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--lp~~~L~~l~  213 (417)
                      +.+++|+.|+|++|..+. .      +|..+..+ .|+.|++++|.+.  +|.. +..+.
T Consensus       250 ~~l~~L~~L~L~~n~~~~-~------~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~  301 (328)
T 4fcg_A          250 GGRAPLKRLILKDCSNLL-T------LPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLP  301 (328)
T ss_dssp             TCCCCCCEEECTTCTTCC-B------CCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSC
T ss_pred             cCCCCCCEEECCCCCchh-h------cchhhhcCCCCCEEeCCCCCchhhccHH-Hhhcc
Confidence            999999999999998444 6      88889889 9999999999955  7764 44444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=7.9e-22  Score=189.14  Aligned_cols=193  Identities=15%  Similarity=0.172  Sum_probs=130.2

Q ss_pred             CCCcccC--cccEEEeec-CCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-----
Q 014835            3 FPSVTSC--HVYTLELVK-VGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-----   73 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~-n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-----   73 (417)
                      +|+.+..  +|++|+|++ |.+. .+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+|++|...+.+|     
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence            5554444  899999995 8887 788889999999999999988888888888899999999999875443443     


Q ss_pred             --CCCccccCCC-------ccccccc-c-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEE
Q 014835           74 --EIPSCNIDGG-------IGIERLA-S-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETL  142 (417)
Q Consensus        74 --~l~~l~l~g~-------~~l~~l~-~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L  142 (417)
                        .+..++++++       ..+..++ . +.|++++|.+.+.+|..+..++ |+.|++++|.+.+..|..++.+++|+.|
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence              3333444443       2344554 4 6666666655555666665555 6666666666665666666666666666


Q ss_pred             EeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          143 IVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       143 ~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ++++|.+...+..+..+++|++|+|++|. +.+.      +|..+..+ .|+.|++++|.++
T Consensus       227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IYGT------LPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEECCBGGGCCCCTTCCEEECCSSC-CEEC------CCGGGGGCTTCCEEECCSSEEE
T ss_pred             ECCCCceeeecCcccccCCCCEEECcCCc-ccCc------CChHHhcCcCCCEEECcCCccc
Confidence            66666665444446666666666666666 4434      66666666 7777777777765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=1.4e-21  Score=209.44  Aligned_cols=197  Identities=19%  Similarity=0.238  Sum_probs=127.2

Q ss_pred             CCCcccC--cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC------
Q 014835            3 FPSVTSC--HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT------   73 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp------   73 (417)
                      +|..++.  +|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+|++|...+.+|      
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence            4554443  8888888888887 778888888888888888888888888888888888888888877655555      


Q ss_pred             -CCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcccc-----------------------------------
Q 014835           74 -EIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPSSL-----------------------------------  109 (417)
Q Consensus        74 -~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l-----------------------------------  109 (417)
                       .+..++++++       ..+..+++ +.|++++|.+.+.+|..+                                   
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence             2233344433       34455555 566666555544444322                                   


Q ss_pred             -----------------------------------cCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC-CCcc
Q 014835          110 -----------------------------------CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM-REVP  153 (417)
Q Consensus       110 -----------------------------------~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp  153 (417)
                                                         ..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+ +.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                               2234556666666666666666666666666666666666 3566


Q ss_pred             hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--cCc
Q 014835          154 ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--LDP  206 (417)
Q Consensus       154 ~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--lp~  206 (417)
                      ..++.+++|+.|+|++|+ +++.      +|..+..+ .|+.|++++|+|+  +|.
T Consensus       674 ~~l~~L~~L~~LdLs~N~-l~g~------ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNK-LDGR------IPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGGGGCTTCCEEECCSSC-CEEC------CCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             hHHhCCCCCCEEECCCCc-ccCc------CChHHhCCCCCCEEECcCCcccccCCC
Confidence            666666666666666666 4444      66666666 6666666666665  554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=5.3e-21  Score=180.56  Aligned_cols=193  Identities=19%  Similarity=0.215  Sum_probs=158.5

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.-...+|++|+|++|.++.+|. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|..++.++.      
T Consensus        25 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~------   98 (285)
T 1ozn_A           25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP------   98 (285)
T ss_dssp             SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT------
T ss_pred             cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH------
Confidence            3554333389999999999998875 488999999999999887777688899999999999999766766643      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                         ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..
T Consensus        99 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  175 (285)
T 1ozn_A           99 ---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (285)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ---HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence               56778888 999999998887778888889999999999998877666778899999999999999988775 5888


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELS  210 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~  210 (417)
                      +++|+.|+|++|. +.+.      .|..+..+ .|+.|++++|.++ +|+..+.
T Consensus       176 l~~L~~L~l~~n~-l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  222 (285)
T 1ozn_A          176 LHSLDRLLLHQNR-VAHV------HPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (285)
T ss_dssp             CTTCCEEECCSSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             ccccCEEECCCCc-cccc------CHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence            9999999999998 5544      57777788 9999999999987 6654333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=3.1e-21  Score=184.94  Aligned_cols=176  Identities=19%  Similarity=0.268  Sum_probs=157.0

Q ss_pred             cccEEEeecCCCc---ccCccccCCcCcceeeccc-cccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835           10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVD-CSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG   85 (417)
Q Consensus        10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~   85 (417)
                      +++.|+|+++.++   .+|..++.+++|++|+|++ |.+.+.+|..++++++|++|+|++|...+.+|          ..
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------~~  120 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------DF  120 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----------GG
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC----------HH
Confidence            6999999999998   6999999999999999995 88888999999999999999999976655676          57


Q ss_pred             cccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCC-CCCEEEeeccCCC-CcchhccCCCCC
Q 014835           86 IERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLE-ALETLIVDRTAMR-EVPESLGQLSSL  162 (417)
Q Consensus        86 l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~l~~L~~L  162 (417)
                      +..+++ ++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.++ +|+.|++++|.+. .+|..+..++ |
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L  199 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L  199 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence            888999 9999999988888999999999999999999998889999999988 9999999999994 7888888887 9


Q ss_pred             cEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          163 KILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       163 ~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +.|+|++|. +.+.      +|..+..+ .|+.|++++|.++
T Consensus       200 ~~L~Ls~N~-l~~~------~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          200 AFVDLSRNM-LEGD------ASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             SEEECCSSE-EEEC------CGGGCCTTSCCSEEECCSSEEC
T ss_pred             cEEECcCCc-ccCc------CCHHHhcCCCCCEEECCCCcee
Confidence            999999998 5545      67677778 9999999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=7.4e-21  Score=203.87  Aligned_cols=128  Identities=21%  Similarity=0.283  Sum_probs=90.1

Q ss_pred             CCCccc-C-cccEEEeecCCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC-----
Q 014835            3 FPSVTS-C-HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE-----   74 (417)
Q Consensus         3 lP~~~~-~-~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~-----   74 (417)
                      +|..+. . +|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..+..+++|++|++++|...+.+|.     
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            455444 4 9999999999998 7888899999999999999999999999999999999999999876656652     


Q ss_pred             --CCccccCCC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC
Q 014835           75 --IPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP  130 (417)
Q Consensus        75 --l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp  130 (417)
                        +..++++++       ..++.+++ +.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence              223333333       23444555 555555555555555555555555555555555444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.2e-19  Score=170.13  Aligned_cols=182  Identities=18%  Similarity=0.197  Sum_probs=127.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +++.++++++.++.+|..+.  ++|+.|+|++|.+.+..+..+.++++|++|+|++| .++.+|.         ..+..+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~---------~~~~~l   84 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPA---------GIFKEL   84 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCT---------TTTSSC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeCh---------hhhcCC
Confidence            46778888888888877554  57888888887666555556777888888888874 3445543         345667


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L  167 (417)
                      ++ +.|++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|+.|+|
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            77 7888888766655555667778888888888877766666677788888888888888776653 677788888888


Q ss_pred             cCCCCChhhhhcccCCCC-ccccC-CcceeecCCCccc-cCcCcccc
Q 014835          168 SNIKRLPEYLQLHLQLPE-NGLEG-IPEYLRRSPRKLT-LDPNELSE  211 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~-~l~~l-~L~~L~l~~n~L~-lp~~~L~~  211 (417)
                      ++|. +++       +|. .+..+ .|+.|++++|.++ +|+..+..
T Consensus       165 ~~n~-l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          165 YNNQ-LKR-------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CSSC-CSC-------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cCCc-CcE-------eChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            8777 442       443 35556 7888888888777 66554433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=1.8e-20  Score=196.70  Aligned_cols=180  Identities=20%  Similarity=0.288  Sum_probs=154.8

Q ss_pred             cccEEEeecCCCc-ccCccccCCcCcceeecccccc--------------------------------------------
Q 014835           10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSM--------------------------------------------   44 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~--------------------------------------------   44 (417)
                      +++.|+|++++++ .+|+++++|++|++|+|++|.+                                            
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~  161 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL  161 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence            7899999999998 8999999999999999998743                                            


Q ss_pred             ---------------------------------CccccccCCCCCCCcEEeeecCCCCCc-----------------CCC
Q 014835           45 ---------------------------------LESISSSIFKLKSLQSIEISNCPIFER-----------------FTE   74 (417)
Q Consensus        45 ---------------------------------~~~lp~~l~~L~~L~~L~Ls~c~~l~~-----------------lp~   74 (417)
                                                       ++.+|..++++++|++|+|++|..-+.                 +| 
T Consensus       162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-  240 (636)
T 4eco_A          162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-  240 (636)
T ss_dssp             HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-
T ss_pred             HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-
Confidence                                             112788899999999999999764442                 66 


Q ss_pred             CCccccCCCcccc--cccc-ceEEcCCCCCCCCCcccccCCCCCcEEeccccc-CCc-cCCcccCCC------CCCCEEE
Q 014835           75 IPSCNIDGGIGIE--RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ-YFM-ILPDELGNL------EALETLI  143 (417)
Q Consensus        75 l~~l~l~g~~~l~--~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~-~~~-~lp~~l~~l------~~L~~L~  143 (417)
                               ..++  ++++ ++|+|++|.+.+.+|..++.+++|++|++++|. +.+ .+|..++.+      ++|++|+
T Consensus       241 ---------~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~  311 (636)
T 4eco_A          241 ---------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY  311 (636)
T ss_dssp             ---------SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred             ---------hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence                     5777  8999 999999999999999999999999999999998 777 788888776      8999999


Q ss_pred             eeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          144 VDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       144 L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      +++|.++.+|.  .++.+++|+.|++++|. +.+.      +| .+..+ .|+.|++++|.++ +|..
T Consensus       312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~------ip-~~~~l~~L~~L~L~~N~l~~lp~~  371 (636)
T 4eco_A          312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGK------LP-AFGSEIKLASLNLAYNQITEIPAN  371 (636)
T ss_dssp             CCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEE------CC-CCEEEEEESEEECCSSEEEECCTT
T ss_pred             CCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccc------hh-hhCCCCCCCEEECCCCccccccHh
Confidence            99999999998  89999999999999998 5555      88 77777 8999999999887 7664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=6.8e-20  Score=168.46  Aligned_cols=194  Identities=21%  Similarity=0.213  Sum_probs=149.1

Q ss_pred             CCCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835            1 MNFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSC   78 (417)
Q Consensus         1 ~~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l   78 (417)
                      +++|. +..+|++|+|++|+++.+|. .++.+++|++|++++|..++.+| ..+.++++|++|++++|+.++.+|.    
T Consensus        24 ~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~----   98 (239)
T 2xwt_C           24 QRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP----   98 (239)
T ss_dssp             SSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT----
T ss_pred             cccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH----
Confidence            35677 44489999999999998887 58889999999999986455555 4678899999999998666666664    


Q ss_pred             ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCc---EEecccc-cCCccCCcccCCCCCCC-EEEeeccCCCCc
Q 014835           79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLT---SLEIIDC-QYFMILPDELGNLEALE-TLIVDRTAMREV  152 (417)
Q Consensus        79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~---~L~L~~n-~~~~~lp~~l~~l~~L~-~L~L~~n~l~~l  152 (417)
                           ..+..+++ +.|++++|.+.+ +|. +..+++|+   +|++++| .+....+..+..+++|+ .|++++|.++.+
T Consensus        99 -----~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C           99 -----DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             -----TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             -----HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence                 46778888 999999987654 776 77788887   9999998 66665556688899999 999999999888


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCCCC-ccccC--CcceeecCCCccc-cCcCcccccc
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE-NGLEG--IPEYLRRSPRKLT-LDPNELSEIV  213 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~-~l~~l--~L~~L~l~~n~L~-lp~~~L~~l~  213 (417)
                      |......++|+.|+|++|+.++ .      +|. .+..+  .|+.|++++|.++ +|+..+..+.
T Consensus       172 ~~~~~~~~~L~~L~L~~n~~l~-~------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          172 QGYAFNGTKLDAVYLNKNKYLT-V------IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             CTTTTTTCEEEEEECTTCTTCC-E------ECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred             CHhhcCCCCCCEEEcCCCCCcc-c------CCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence            8765555889999999985354 2      443 34444  7889999999887 7776555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.9e-20  Score=196.54  Aligned_cols=195  Identities=13%  Similarity=0.148  Sum_probs=126.9

Q ss_pred             CCCcccC--cccEEEeecCCCcc------------------cCcccc--CCcCcceeeccccccCccccccCCCCCCCcE
Q 014835            3 FPSVTSC--HVYTLELVKVGIKE------------------LPSSIE--CLSNLKKLYIVDCSMLESISSSIFKLKSLQS   60 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~n~l~~------------------lp~~i~--~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~   60 (417)
                      +|+.++.  +|++|+|++|.++.                  +|..++  ++++|++|+|++|.+.+.+|..++++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            5665544  99999999999997                  999999  9999999999999999999999999999999


Q ss_pred             EeeecCCCCC--cCC-------------CCCccccCCC------c--ccccccc-ceEEcCCCCCCCCCcccccCCCCCc
Q 014835           61 IEISNCPIFE--RFT-------------EIPSCNIDGG------I--GIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLT  116 (417)
Q Consensus        61 L~Ls~c~~l~--~lp-------------~l~~l~l~g~------~--~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~  116 (417)
                      |++++|..+.  .+|             .+..++++++      .  .+..+++ +.|++++|.+.+.+| .+..+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            9999987343  344             3333444433      1  3445555 555555555544555 555555555


Q ss_pred             EEecccccCCccCCcccCCCCC-CCEEEeeccCCCCcchhccCCC--CCcEEEccCCCCChhhhhcccCCCCccc-----
Q 014835          117 SLEIIDCQYFMILPDELGNLEA-LETLIVDRTAMREVPESLGQLS--SLKILVLSNIKRLPEYLQLHLQLPENGL-----  188 (417)
Q Consensus       117 ~L~L~~n~~~~~lp~~l~~l~~-L~~L~L~~n~l~~lp~~l~~L~--~L~~L~L~~n~~l~~~l~~~l~lp~~l~-----  188 (417)
                      +|++++|.+. .+|..++.+++ |+.|++++|.++.+|..+..++  +|+.|++++|. +.+.      +|..+.     
T Consensus       357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~------~p~~l~~~~~~  428 (636)
T 4eco_A          357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSV------DGKNFDPLDPT  428 (636)
T ss_dssp             EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTT------TTCSSCTTCSS
T ss_pred             EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCc------chhhhcccccc
Confidence            5555555544 45555555555 6666666666655555554433  56666666555 3333      444443     


Q ss_pred             --cC-CcceeecCCCccc-cCc
Q 014835          189 --EG-IPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       189 --~l-~L~~L~l~~n~L~-lp~  206 (417)
                        .+ .|+.|++++|.++ +|.
T Consensus       429 ~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          429 PFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             CCCCCCEEEEECCSSCCCSCCT
T ss_pred             cccCCCCCEEECcCCccCcCCH
Confidence              44 5666666666655 444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=6.5e-20  Score=174.76  Aligned_cols=184  Identities=21%  Similarity=0.223  Sum_probs=112.1

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCc--cccccCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLE--SISSSIFKLKSLQSIEISNCPIFERFTEIPSC   78 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~--~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l   78 (417)
                      ++|.-...+|++|+|++|.++.+|.. ++.+++|++|+|++|.+..  ..|..+..+++|++|++++|. +..+|     
T Consensus        21 ~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~-----   94 (306)
T 2z66_A           21 SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS-----   94 (306)
T ss_dssp             SCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE-----
T ss_pred             cCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccCh-----
Confidence            45654434899999999999999886 6889999999999977653  235566678999999999864 33333     


Q ss_pred             ccCCCcccccccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC--cch
Q 014835           79 NIDGGIGIERLAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE--VPE  154 (417)
Q Consensus        79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~--lp~  154 (417)
                           ..+..+++ +.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..  +|.
T Consensus        95 -----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           95 -----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             -----EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             -----hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence                 23445555 555555554433322 345555555555555555555555555555555555555555532  455


Q ss_pred             hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          155 SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       155 ~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      .+..+++|+.|+|++|. +++.      .|..+..+ .|+.|++++|.++
T Consensus       170 ~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQ-LEQL------SPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             CCTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECTTSCCS
T ss_pred             HHhhCcCCCEEECCCCC-cCCc------CHHHhcCCCCCCEEECCCCccC
Confidence            55555555555555555 3322      34444444 5555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=5e-19  Score=170.52  Aligned_cols=189  Identities=16%  Similarity=0.167  Sum_probs=138.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.....+|++|+|++|.++.+|. .++.+++|++|+|++|.+.+..|..+.++++|++|++++| .++.+|.      
T Consensus        45 ~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~------  117 (330)
T 1xku_A           45 KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE------  117 (330)
T ss_dssp             SCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS------
T ss_pred             ccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh------
Confidence            3454333478888888888887776 5888888888888888777776888888888888888885 4555552      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCCCCcchhcc
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAMREVPESLG  157 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~  157 (417)
                          .+.  ++ +.|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.++.+|..+.
T Consensus       118 ----~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~  191 (330)
T 1xku_A          118 ----KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP  191 (330)
T ss_dssp             ----SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC
T ss_pred             ----hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc
Confidence                222  46 788888887776666677888888888888887643  566677888888888888888887776554


Q ss_pred             CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccccc
Q 014835          158 QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEI  212 (417)
Q Consensus       158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l  212 (417)
                        ++|+.|++++|. +++.      .|..+..+ .|+.|++++|.++ +++..+..+
T Consensus       192 --~~L~~L~l~~n~-l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          192 --PSLTELHLDGNK-ITKV------DAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             --TTCSEEECTTSC-CCEE------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             --ccCCEEECCCCc-CCcc------CHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence              788888888887 5533      45566677 8888888888877 655444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2.4e-19  Score=179.74  Aligned_cols=198  Identities=17%  Similarity=0.185  Sum_probs=129.7

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-------   73 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------   73 (417)
                      ++|..+..+++.|+|++|.++.++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++| .++.+|       
T Consensus        57 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l  135 (440)
T 3zyj_A           57 EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYL  135 (440)
T ss_dssp             SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSC
T ss_pred             cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhcc
Confidence            4666555589999999999997764 5899999999999998877777788999999999999996 344443       


Q ss_pred             -CCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCcccCCCCCCCEEE
Q 014835           74 -EIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLI  143 (417)
Q Consensus        74 -~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~  143 (417)
                       .+..|+++++       ..+..+++ +.|++++|..++.++. .+..+++|++|++++|.+. .+| .+..+++|+.|+
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~  213 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD  213 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEE
Confidence             3334445444       23455556 6666666555554443 4556666666666666543 334 355666666666


Q ss_pred             eeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcc
Q 014835          144 VDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNEL  209 (417)
Q Consensus       144 L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L  209 (417)
                      |++|.+..+ |..+..+++|+.|+|++|. +++.      .+..+..+ +|+.|++++|.|+ +|+..+
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVI------ERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEE------CTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCc-eeEE------ChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            666666544 4456666666666666666 4423      34445555 6777777777766 555433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=1.3e-19  Score=170.05  Aligned_cols=193  Identities=18%  Similarity=0.221  Sum_probs=146.5

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|..+..+|++|+|++|.++.++. .+..+++|++|+|++|.+.+..+..+.++++|++|+|++|.. ..++.      
T Consensus        21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~------   93 (276)
T 2z62_A           21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLAL------   93 (276)
T ss_dssp             SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECT------
T ss_pred             ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccCh------
Confidence            4566444489999999999998876 688999999999999877766666788999999999999643 33332      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcc-hhcc
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVP-ESLG  157 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~  157 (417)
                         ..+..+++ +.|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.++.++ ..+.
T Consensus        94 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           94 ---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             ---hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence               46777888 888888887766666578888888888888888766 36888888888888888888887665 3555


Q ss_pred             CCCCCc----EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccccc
Q 014835          158 QLSSLK----ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEI  212 (417)
Q Consensus       158 ~L~~L~----~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l  212 (417)
                      .+++|+    .|++++|. +. .      ++...... +|+.|++++|.++ +|+..+..+
T Consensus       171 ~l~~L~~l~l~L~ls~n~-l~-~------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNP-MN-F------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             HHHTCTTCCEEEECCSSC-CC-E------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             hhhhccccceeeecCCCc-cc-c------cCccccCCCcccEEECCCCceeecCHhHhccc
Confidence            555555    78888888 44 2      55556666 8888888888877 666544333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=2.6e-19  Score=179.80  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             CCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-C
Q 014835          114 SLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-I  191 (417)
Q Consensus       114 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~  191 (417)
                      +|+.|++++|.+.+..|..++.+++|+.|++++|.+..+ |..+..+++|++|+|++|. +.+.      .|..+..+ .
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~~~~l~~  348 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSI------DSRMFENLDK  348 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEE------CGGGGTTCTT
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCc------ChhHhcCccc
Confidence            455555555555556667777777777777777777554 4467777777777777776 4423      34455556 7


Q ss_pred             cceeecCCCccc-cCcCccc
Q 014835          192 PEYLRRSPRKLT-LDPNELS  210 (417)
Q Consensus       192 L~~L~l~~n~L~-lp~~~L~  210 (417)
                      |+.|++++|.++ +++..+.
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTT
T ss_pred             CCEEECCCCcccccChhhcc
Confidence            777777777766 4443333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=8.3e-19  Score=164.32  Aligned_cols=184  Identities=21%  Similarity=0.251  Sum_probs=154.4

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|..+..+|++|+|++|.++.+|. .+..+++|++|+|++|.+....+..+.++++|++|++++| .+..+|.      
T Consensus        30 ~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~------  102 (270)
T 2o6q_A           30 AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPI------  102 (270)
T ss_dssp             SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCT------
T ss_pred             ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCH------
Confidence            4565444489999999999998887 5999999999999998766544455688999999999996 4555553      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                         ..+..+++ +.|++++|.+....|..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..
T Consensus       103 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  179 (270)
T 2o6q_A          103 ---GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK  179 (270)
T ss_dssp             ---TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ---hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence               46778899 999999998887777788999999999999999877666678999999999999999988875 5889


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~  203 (417)
                      +++|+.|+|++|. ++ .      +|.. +..+ .|+.|++++|++.
T Consensus       180 l~~L~~L~L~~N~-l~-~------~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          180 LTELKTLKLDNNQ-LK-R------VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTCCEEECCSSC-CS-C------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCcCEEECCCCc-CC-c------CCHHHhccccCCCEEEecCCCee
Confidence            9999999999998 55 2      5544 5567 9999999999976

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=2.6e-19  Score=168.91  Aligned_cols=176  Identities=20%  Similarity=0.235  Sum_probs=150.2

Q ss_pred             cccEEEeecCCCccc-CccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      +|++|+|++|.++.+ |..++.+++|++|+|++|..++.+ |..+..+++|++|++++|......|          ..+.
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~  126 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------GLFR  126 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------TTTT
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH----------hHhh
Confidence            999999999999977 567999999999999998745555 7789999999999999975433323          5678


Q ss_pred             cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEE
Q 014835           88 RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKIL  165 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L  165 (417)
                      .+++ +.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+ |..+..+++|+.|
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            8999 9999999988766667788999999999999998876667799999999999999999765 7789999999999


Q ss_pred             EccCCCCChhhhhcccCCC-CccccC-CcceeecCCCccc
Q 014835          166 VLSNIKRLPEYLQLHLQLP-ENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       166 ~L~~n~~l~~~l~~~l~lp-~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ++++|. +++       +| ..+..+ .|+.|++++|++.
T Consensus       207 ~l~~n~-l~~-------~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          207 YLFANN-LSA-------LPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECCSSC-CSC-------CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             eCCCCc-CCc-------CCHHHcccCcccCEEeccCCCcc
Confidence            999998 552       44 346677 9999999999976

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=3.7e-19  Score=179.04  Aligned_cols=196  Identities=20%  Similarity=0.205  Sum_probs=123.5

Q ss_pred             CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-------
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-------   73 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------   73 (417)
                      .+|.-+..+|++|+|++|.|+.++ ..++.+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|       
T Consensus        68 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  146 (452)
T 3zyi_A           68 EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYL  146 (452)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSC
T ss_pred             ccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhccc
Confidence            456544448999999999999774 468999999999999988877777889999999999999964 44433       


Q ss_pred             -CCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCcccCCCCCCCEEE
Q 014835           74 -EIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLI  143 (417)
Q Consensus        74 -~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~  143 (417)
                       .+..|+++++       ..+..+++ +.|++++|..++.+|. .+..+++|++|++++|.+.+ +| .+..+++|+.|+
T Consensus       147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  224 (452)
T 3zyi_A          147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE  224 (452)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEE
Confidence             3333444444       23445555 5555555545544443 34555666666666655433 23 355556666666


Q ss_pred             eeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          144 VDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       144 L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      |++|.+..+ |..+..+++|+.|+|++|. +.+.      .|..+..+ +|+.|++++|.|+ +|+.
T Consensus       225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLI------ERNAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             CTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CcCCcCcccCcccccCccCCCEEEeCCCc-CceE------CHHHhcCCCCCCEEECCCCcCCccChH
Confidence            666666443 4455666666666666665 3323      34444455 6666666666655 5544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=5.7e-19  Score=163.60  Aligned_cols=175  Identities=13%  Similarity=0.123  Sum_probs=149.7

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      ..++++++++.++.+|..+.  ++|+.|+|++|.+.+..|..+.++++|++|+|++|. +..++.         ..+..+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~~l   82 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSA---------GVFDDL   82 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT---------TTTTTC
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCH---------hHhccC
Confidence            57899999999999998776  699999999998888878889999999999999964 444442         467888


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L  167 (417)
                      ++ +.|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.++.+|. .+..+++|++|+|
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence            99 999999998877667778899999999999999887666678999999999999999988876 6899999999999


Q ss_pred             cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ++|. +++.      .+..+..+ .|+.|++++|+++
T Consensus       163 ~~N~-l~~~------~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          163 STNQ-LQSV------PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CSSC-CSCC------CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCc-CCcc------CHHHHhCCCCCCEEEeeCCcee
Confidence            9998 5533      34456677 9999999999976

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=6e-19  Score=167.24  Aligned_cols=175  Identities=17%  Similarity=0.169  Sum_probs=136.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +++++++++++++.+|..+.  ++|+.|+|++|.+.+..|..+.++++|++|+|++|. ++.++           ....+
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-----------~~~~l   76 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ-----------VDGTL   76 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEE-----------CCSCC
T ss_pred             CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCccc-----------CCCCC
Confidence            78999999999999988764  689999999988777777788899999999999853 44443           22567


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L  167 (417)
                      ++ +.|++++|.+ ..+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|. .+..+++|+.|+|
T Consensus        77 ~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            77 8888888855 4677778888888888888888777666778888888888888888877765 4577888888888


Q ss_pred             cCCCCChhhhhcccCCCCcc-ccC-CcceeecCCCccc-cCcC
Q 014835          168 SNIKRLPEYLQLHLQLPENG-LEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l-~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      ++|+ ++ .      +|... ..+ .|+.|++++|.|+ +|..
T Consensus       156 ~~N~-l~-~------l~~~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          156 ANNN-LT-E------LPAGLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             TTSC-CS-C------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCc-CC-c------cCHHHhcCcCCCCEEECCCCcCCccChh
Confidence            8888 54 3      66554 446 8888888888877 6665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=5e-19  Score=170.76  Aligned_cols=193  Identities=19%  Similarity=0.172  Sum_probs=125.8

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-----CC
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-----EI   75 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-----~l   75 (417)
                      ++|.....+|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..|..+.++++|++|++++|. +..+|     .+
T Consensus        47 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L  125 (332)
T 2ft3_A           47 AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSL  125 (332)
T ss_dssp             SCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTC
T ss_pred             ccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccC
Confidence            4565444489999999999998765 68999999999999988877778889999999999999964 44554     34


Q ss_pred             CccccCCC-------cccccccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEee
Q 014835           76 PSCNIDGG-------IGIERLAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVD  145 (417)
Q Consensus        76 ~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~  145 (417)
                      ..++++++       ..+..+++ +.|++++|.+..  ..|..+..+ +|++|++++|.+.+ +|..+.  ++|++|+++
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~  201 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLD  201 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCC
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECC
Confidence            44555554       23666777 788888776632  445555555 55555555555333 333322  456666666


Q ss_pred             ccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835          146 RTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       146 ~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~  206 (417)
                      +|.+..++ ..+..+++|+.|+|++|. +.+.      .+..+..+ .|+.|++++|.++ +|.
T Consensus       202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~lp~  258 (332)
T 2ft3_A          202 HNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMI------ENGSLSFLPTLRELHLDNNKLSRVPA  258 (332)
T ss_dssp             SSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCC------CTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCc-CCcC------ChhHhhCCCCCCEEECCCCcCeecCh
Confidence            66665444 456666666666666665 3322      23344555 6666666666655 554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=7.6e-20  Score=178.00  Aligned_cols=159  Identities=20%  Similarity=0.249  Sum_probs=98.0

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.....+|++|+|++|.++.+|. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|. ++.+|.      
T Consensus        45 ~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------  117 (353)
T 2z80_A           45 SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSS------  117 (353)
T ss_dssp             SCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCH------
T ss_pred             cccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCH------
Confidence            4666444489999999999998887 68999999999999988777777789999999999999964 344432      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcc--cccCCCCCcEEeccccc-CCccCCcccCCCCCCCEEEeeccCCCCc-chh
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPS--SLCMFKSLTSLEIIDCQ-YFMILPDELGNLEALETLIVDRTAMREV-PES  155 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~--~l~~l~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~  155 (417)
                         ..+..+++ ++|++++|.+. .+|.  .+..+++|++|++++|. +....+..++.+++|++|++++|.+..+ |..
T Consensus       118 ---~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          118 ---SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             ---HHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ---hHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence               12444444 55555554333 2332  34445555555555543 2222233444455555555555554332 344


Q ss_pred             ccCCCCCcEEEccCCC
Q 014835          156 LGQLSSLKILVLSNIK  171 (417)
Q Consensus       156 l~~L~~L~~L~L~~n~  171 (417)
                      +..+++|++|++++|.
T Consensus       194 l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             TTTCSEEEEEEEECSC
T ss_pred             HhccccCCeecCCCCc
Confidence            4444555555554444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=9.6e-20  Score=196.14  Aligned_cols=179  Identities=23%  Similarity=0.279  Sum_probs=139.5

Q ss_pred             cccEEEeecCCCc-ccCccccCCcCcceeec-cccccCcc----------------------------------------
Q 014835           10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYI-VDCSMLES----------------------------------------   47 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L-s~n~~~~~----------------------------------------   47 (417)
                      +++.|+|+++++. .+|+++++|++|++|+| ++|.+.+.                                        
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            6889999999987 88888999999999999 55532221                                        


Q ss_pred             ------------------------------------ccccCCCCCCCcEEeeecCCCCC-----------------cCCC
Q 014835           48 ------------------------------------ISSSIFKLKSLQSIEISNCPIFE-----------------RFTE   74 (417)
Q Consensus        48 ------------------------------------lp~~l~~L~~L~~L~Ls~c~~l~-----------------~lp~   74 (417)
                                                          +|..++++++|++|+|++|...+                 .+| 
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-  482 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-  482 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-
Confidence                                                78888889999999999976444                 155 


Q ss_pred             CCccccCCCcccc--cccc-ceEEcCCCCCCCCCcccccCCCCCcEEeccccc-CCc-cCCcccCCC-------CCCCEE
Q 014835           75 IPSCNIDGGIGIE--RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ-YFM-ILPDELGNL-------EALETL  142 (417)
Q Consensus        75 l~~l~l~g~~~l~--~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~-~~~-~lp~~l~~l-------~~L~~L  142 (417)
                               ..++  .+++ +.|+|++|.+.+.+|..+..+++|+.|+|++|+ +.+ .+|..++.+       ++|+.|
T Consensus       483 ---------~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          483 ---------EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             ---------SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             ---------hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence                     4555  8888 888888888888888888888888888888887 666 677655544       488888


Q ss_pred             EeeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          143 IVDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       143 ~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      ++++|.+..+|.  .++.+++|+.|+|++|. +. .      +| .+..+ .|+.|++++|.++ +|..
T Consensus       554 ~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~-~------lp-~~~~L~~L~~L~Ls~N~l~~lp~~  613 (876)
T 4ecn_A          554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VR-H------LE-AFGTNVKLTDLKLDYNQIEEIPED  613 (876)
T ss_dssp             ECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CC-B------CC-CCCTTSEESEEECCSSCCSCCCTT
T ss_pred             EeeCCcCCccCChhhhhcCCCCCEEECCCCC-cc-c------ch-hhcCCCcceEEECcCCccccchHH
Confidence            888888888887  78888888888888887 44 4      77 66677 8888888888877 6653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=3.3e-19  Score=175.75  Aligned_cols=66  Identities=20%  Similarity=0.168  Sum_probs=38.3

Q ss_pred             cCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835          133 LGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       133 l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~  206 (417)
                      ++.+++|++|++++|.+..+ |..+..+++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.++ +|+
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~-~------~~~~~~~l~~L~~L~L~~n~l~~~~~  312 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV-A------LNLYGQPIPTLKVLDLSHNHLLHVER  312 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CC-E------EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Cc-c------cCcccCCCCCCCEEECCCCcceecCc
Confidence            44556666666666666443 4556666666666666666 33 2      44444445 6666666666655 443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=2.1e-19  Score=171.22  Aligned_cols=193  Identities=18%  Similarity=0.206  Sum_probs=148.4

Q ss_pred             CCCC--cccC-cccEEEeecCCCccc---CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC
Q 014835            2 NFPS--VTSC-HVYTLELVKVGIKEL---PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI   75 (417)
Q Consensus         2 ~lP~--~~~~-~L~~L~Ls~n~l~~l---p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l   75 (417)
                      .+|.  +... +|++|+|++|.++.+   |..+..+++|++|+|++|.+. .+|..+..+++|++|++++|. +..++..
T Consensus        42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-l~~~~~~  119 (306)
T 2z66_A           42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEF  119 (306)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE-EESSTTT
T ss_pred             ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc-ccccccc
Confidence            4555  2344 999999999999855   566788999999999997654 577778899999999999963 3333311


Q ss_pred             CccccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCc-
Q 014835           76 PSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREV-  152 (417)
Q Consensus        76 ~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~l-  152 (417)
                              ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.++.+ 
T Consensus       120 --------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  191 (306)
T 2z66_A          120 --------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  191 (306)
T ss_dssp             --------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             --------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence                    25677788 889999888777777888888899999999888776 5788888889999999999988766 


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE  211 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~  211 (417)
                      |..+..+++|+.|+|++|. +++.      .+..+..+ .|+.|++++|.++ .++..+..
T Consensus       192 ~~~~~~l~~L~~L~L~~N~-l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          192 PTAFNSLSSLQVLNMSHNN-FFSL------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CSBC------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             HHHhcCCCCCCEEECCCCc-cCcc------ChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            5678888899999999888 4422      23345566 8899999999877 44443433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=1.4e-18  Score=174.49  Aligned_cols=204  Identities=17%  Similarity=0.166  Sum_probs=139.9

Q ss_pred             CCCCcccCcccEEEeecCCCccc-CccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCC-------CcC
Q 014835            2 NFPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIF-------ERF   72 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l-------~~l   72 (417)
                      .+|. ...+|++|+|++|.++.+ |..++.+++|++|+|++|.+.+.+ |..+.++++|++|+|++|...       ..+
T Consensus        24 ~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           24 QVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             SCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             cCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence            4555 223788888888888765 556778888888888887766555 445777888888888876532       233


Q ss_pred             CCCCccccCCC---------cccccccc-ceEEcCCCCCCCCCccc-ccCCCCCcEEecccccCCccCCcccCCC-----
Q 014835           73 TEIPSCNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSS-LCMFKSLTSLEIIDCQYFMILPDELGNL-----  136 (417)
Q Consensus        73 p~l~~l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l-----  136 (417)
                      +.+..|+++++         ..+..+++ +.|+|++|.+.+..|.. +..+++|++|++++|.+.+..|..+..+     
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence            44455566555         12666777 77777777776666655 6677777777777776655444332211     


Q ss_pred             --------------------------------------------------------------------------------
Q 014835          137 --------------------------------------------------------------------------------  136 (417)
Q Consensus       137 --------------------------------------------------------------------------------  136 (417)
                                                                                                      
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence                                                                                            


Q ss_pred             ------------CCCCEEEeeccCCCC-cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCcc
Q 014835          137 ------------EALETLIVDRTAMRE-VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKL  202 (417)
Q Consensus       137 ------------~~L~~L~L~~n~l~~-lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L  202 (417)
                                  ++|+.|++++|.+.. +|..++.+++|+.|+|++|. +.+.      .|..+..+ .|+.|++++|.+
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKI------DDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCC
T ss_pred             cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-cccc------ChhHhcCcccCCEEECCCCcc
Confidence                        356666666676643 46788999999999999999 5544      56677888 999999999998


Q ss_pred             c-cCcCcccccc
Q 014835          203 T-LDPNELSEIV  213 (417)
Q Consensus       203 ~-lp~~~L~~l~  213 (417)
                      + +++..+..+.
T Consensus       336 ~~~~~~~~~~l~  347 (455)
T 3v47_A          336 GSIDSRMFENLD  347 (455)
T ss_dssp             CEECGGGGTTCT
T ss_pred             CCcChhHhcCcc
Confidence            8 6665444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=1.9e-18  Score=174.80  Aligned_cols=187  Identities=20%  Similarity=0.208  Sum_probs=98.7

Q ss_pred             cccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835           10 HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~   81 (417)
                      +|++|+|++|.++.+ |..++.+++|++|+|++|.+....+..+.++++|++|+|++|..       +..++.+..++++
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  136 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG  136 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence            666777766666654 44566666666666666554433333456666666666666542       2223334444444


Q ss_pred             CC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEeccccc------------------------CCccC
Q 014835           82 GG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQ------------------------YFMIL  129 (417)
Q Consensus        82 g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~------------------------~~~~l  129 (417)
                      ++       ..+..+++ +.|++++|.+....+..+..+++|+.|++++|.                        ..+.+
T Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~  216 (477)
T 2id5_A          137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM  216 (477)
T ss_dssp             CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred             CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence            43       24455555 566665554443333334444444444444444                        44444


Q ss_pred             CcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          130 PDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       130 p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      |.......+|+.|++++|.++.+| ..+..+++|+.|+|++|. +++.      .+..+..+ .|+.|++++|.++
T Consensus       217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTI------EGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEE------CTTSCTTCTTCCEEECCSSCCS
T ss_pred             CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCcc------ChhhccccccCCEEECCCCccc
Confidence            433333345555555566665555 345666677777777666 3322      22233344 5555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1.7e-18  Score=174.14  Aligned_cols=184  Identities=22%  Similarity=0.258  Sum_probs=151.8

Q ss_pred             cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835           10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~   81 (417)
                      +|++|+|++|.|+.++. .+..+++|++|+|++|.+....+..+..+++|++|+|++|..       +..++.+..|+++
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence            89999999999997764 588899999999999877665556688899999999998753       2334555567776


Q ss_pred             CC--------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc
Q 014835           82 GG--------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV  152 (417)
Q Consensus        82 g~--------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l  152 (417)
                      ++        ..+..+++ +.|+|++|.+. .+| .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+..+
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence            63        35778899 99999999765 455 478899999999999999999899999999999999999999765


Q ss_pred             -chhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835          153 -PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       153 -p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~  203 (417)
                       |..+..+++|+.|+|++|. ++ .      +|.. +..+ .|+.|++++|++.
T Consensus       258 ~~~~~~~l~~L~~L~L~~N~-l~-~------~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          258 ERNAFDGLASLVELNLAHNN-LS-S------LPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CS-C------CCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CHHHhcCCCCCCEEECCCCc-CC-c------cChHHhccccCCCEEEccCCCcC
Confidence             5678999999999999998 55 2      5544 4566 9999999999976

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.8e-18  Score=173.41  Aligned_cols=188  Identities=20%  Similarity=0.271  Sum_probs=154.4

Q ss_pred             cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCC
Q 014835            6 VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIP   76 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~   76 (417)
                      +... +|++|+|++|.++.++. .+..+++|++|+|++|.+....+..+..+++|++|+|++|..       +..++.+.
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            3344 89999999999998774 588899999999999876665556788999999999999753       33445566


Q ss_pred             ccccCCC--------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeecc
Q 014835           77 SCNIDGG--------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRT  147 (417)
Q Consensus        77 ~l~l~g~--------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n  147 (417)
                      .|+++++        ..+..+++ +.|+|++|.+. .+| .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            6777763        35778999 99999999654 566 4788999999999999999988999999999999999999


Q ss_pred             CCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835          148 AMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       148 ~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~  203 (417)
                      .+..++ ..+..+++|+.|+|++|+ ++.       +|.. +..+ .|+.|++++|++.
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-------~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNN-LTL-------LPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSC-CCC-------CCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCC-CCc-------cChhHhccccCCCEEEcCCCCcc
Confidence            997664 578999999999999998 552       5544 4566 9999999999976

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=8.9e-19  Score=182.46  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=82.3

Q ss_pred             ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835           92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus        92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      +.|+|++|.+.+  +..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+..+|..+..+++|+.|+|++|.
T Consensus       235 ~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence            444444444433  345677888888888888888877888888888888888888888788777778888888888887


Q ss_pred             CChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccccc
Q 014835          172 RLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIV  213 (417)
Q Consensus       172 ~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~  213 (417)
                       +. .      +|..+..+ .|+.|++++|.++ +|...+..+.
T Consensus       313 -l~-~------i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~  348 (597)
T 3oja_B          313 -LL-H------VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK  348 (597)
T ss_dssp             -CC-C------CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred             -CC-c------cCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence             44 3      77777777 8888888888877 6655554444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=174.12  Aligned_cols=160  Identities=19%  Similarity=0.252  Sum_probs=107.0

Q ss_pred             CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|..+..+++.|+|++|.++.++ ..+..+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|.      
T Consensus        25 ~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------   97 (477)
T 2id5_A           25 AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPL------   97 (477)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCT------
T ss_pred             cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCc------
Confidence            466654448999999999999875 469999999999999998888778899999999999999964 445543      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                         ..+..+++ +.|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..
T Consensus        98 ---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  174 (477)
T 2id5_A           98 ---GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH  174 (477)
T ss_dssp             ---TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred             ---ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence               23445555 555555555555455555555555555555555555555555555555555555555544442 3445


Q ss_pred             CCCCcEEEccCCC
Q 014835          159 LSSLKILVLSNIK  171 (417)
Q Consensus       159 L~~L~~L~L~~n~  171 (417)
                      +++|+.|+|++|.
T Consensus       175 l~~L~~L~l~~n~  187 (477)
T 2id5_A          175 LHGLIVLRLRHLN  187 (477)
T ss_dssp             CTTCCEEEEESCC
T ss_pred             cCCCcEEeCCCCc
Confidence            5555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=3.2e-19  Score=192.08  Aligned_cols=180  Identities=18%  Similarity=0.228  Sum_probs=119.3

Q ss_pred             CCCcccC--cccEEEeecCCCcc------------------cCcccc--CCcCcceeeccccccCccccccCCCCCCCcE
Q 014835            3 FPSVTSC--HVYTLELVKVGIKE------------------LPSSIE--CLSNLKKLYIVDCSMLESISSSIFKLKSLQS   60 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~n~l~~------------------lp~~i~--~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~   60 (417)
                      +|+.++.  +|++|+|++|.++.                  +|..++  .+++|++|+|++|.+.+.+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            6765544  99999999999997                  999988  9999999999999999999999999999999


Q ss_pred             EeeecCCCCC--cCCCCCccccCCCccccccc-------c-ceEEcCCCCCCCCCcc--cccCCCCCcEEecccccCCcc
Q 014835           61 IEISNCPIFE--RFTEIPSCNIDGGIGIERLA-------S-CRLVLEDCSSLQSLPS--SLCMFKSLTSLEIIDCQYFMI  128 (417)
Q Consensus        61 L~Ls~c~~l~--~lp~l~~l~l~g~~~l~~l~-------~-~~L~L~~n~~l~~lp~--~l~~l~~L~~L~L~~n~~~~~  128 (417)
                      |+|++|+.+.  .+|          ..++.++       + +.|+|++|.+. .+|.  .+..+++|+.|+|++|.+. .
T Consensus       520 L~Ls~N~~lsg~~iP----------~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~  587 (876)
T 4ecn_A          520 LNIACNRGISAAQLK----------ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H  587 (876)
T ss_dssp             EECTTCTTSCHHHHH----------HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred             EECcCCCCcccccch----------HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence            9999986343  344          2233332       5 55666655544 5555  5555666666666665544 5


Q ss_pred             CCcccCCCCCCCEEEeeccCCCCcchhccCCCC-CcEEEccCCCCChhhhhcccCCCCccccC-C--cceeecCCCccc
Q 014835          129 LPDELGNLEALETLIVDRTAMREVPESLGQLSS-LKILVLSNIKRLPEYLQLHLQLPENGLEG-I--PEYLRRSPRKLT  203 (417)
Q Consensus       129 lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~-L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~--L~~L~l~~n~L~  203 (417)
                      +| .++.+++|+.|+|++|.+..+|..+..+++ |+.|+|++|. +. .      +|..+... .  |+.|++++|.+.
T Consensus       588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~-~------lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LK-Y------IPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CC-S------CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CC-c------CchhhhccccCCCCEEECcCCcCC
Confidence            55 555555666666666655555555555555 6666665555 33 2      44443333 2  555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=3.8e-18  Score=160.04  Aligned_cols=174  Identities=17%  Similarity=0.171  Sum_probs=147.3

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|+.|+++++.++.++. ++.+++|++|+|++|.+.+ ++ .+.++++|++|++++| .++.++.         ..+..+
T Consensus        42 ~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n-~l~~~~~---------~~~~~l  108 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGN-QLQSLPN---------GVFDKL  108 (272)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTS-CCCCCCT---------TTTTTC
T ss_pred             ceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCC-ccCccCh---------hHhcCC
Confidence            79999999999998875 8899999999999987655 44 5889999999999996 4445543         457888


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L  167 (417)
                      ++ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .++.+++|+.|+|
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence            99 999999998877777778899999999999999887777778999999999999999987765 4688999999999


Q ss_pred             cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ++|. +++.      .|..+..+ .|+.|++++|++.
T Consensus       189 ~~N~-l~~~------~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          189 YQNQ-LKSV------PDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CSSC-CSCC------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCc-CCcc------CHHHHhCCcCCCEEEccCCCcc
Confidence            9998 5533      44446677 9999999999976

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=2.8e-18  Score=178.63  Aligned_cols=194  Identities=19%  Similarity=0.179  Sum_probs=114.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC--------CCCCccccC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF--------TEIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l--------p~l~~l~l~   81 (417)
                      +|++|++++|.++++|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.....+        +.+..++++
T Consensus       279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  358 (606)
T 3t6q_A          279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS  358 (606)
T ss_dssp             TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred             CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence            778888888877777777777788888888877766666667777788888888776543332        333344444


Q ss_pred             CC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcc-cCCCCCCCEEEeeccCCC
Q 014835           82 GG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDE-LGNLEALETLIVDRTAMR  150 (417)
Q Consensus        82 g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~L~~n~l~  150 (417)
                      ++         ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.
T Consensus       359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD  438 (606)
T ss_dssp             SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred             CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence            43         12445555 66666666555555555556666666666666555444332 555666666666666663


Q ss_pred             C-cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          151 E-VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       151 ~-lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      . .|..+..+++|+.|++++|. +.+.   .+..+..+..+ .|+.|++++|.++ +++.
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~-l~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  494 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNH-FPKG---NIQKTNSLQTLGRLEILVLSFCDLSSIDQH  494 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCB-CGGG---EECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred             CcCHHHHhCCCCCCEEECCCCC-CCcc---ccccchhhccCCCccEEECCCCccCccChh
Confidence            3 34455566666666666665 3211   00012334455 6666666666655 4433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=1.9e-18  Score=162.12  Aligned_cols=182  Identities=16%  Similarity=0.197  Sum_probs=150.0

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .++.+... +|++|+|++|.++.++ .++.+++|++|+|++|.+.+..+..+.++++|++|++++|. +..++.      
T Consensus        55 ~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------  126 (272)
T 3rfs_A           55 SVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPD------  126 (272)
T ss_dssp             CCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT------
T ss_pred             cccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCH------
Confidence            35566666 9999999999999876 59999999999999998877667778999999999999964 444443      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                         ..+..+++ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+..+|. .+..
T Consensus       127 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (272)
T 3rfs_A          127 ---GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  203 (272)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ---HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC
Confidence               45788999 999999998776666677899999999999999887777778999999999999999977765 5789


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc--cCcC
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT--LDPN  207 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~--lp~~  207 (417)
                      +++|+.|+|++|+ +...      .|      .++.|++..|.++  +|..
T Consensus       204 l~~L~~L~l~~N~-~~~~------~~------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          204 LTSLQYIWLHDNP-WDCT------CP------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CTTCCEEECCSSC-BCCC------TT------TTHHHHHHHHHTGGGBBCT
T ss_pred             CcCCCEEEccCCC-cccc------Cc------HHHHHHHHHHhCCCcccCc
Confidence            9999999999998 3312      22      5777777777766  5553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=1.2e-18  Score=163.60  Aligned_cols=180  Identities=17%  Similarity=0.160  Sum_probs=152.1

Q ss_pred             cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCC
Q 014835            6 VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG   83 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~   83 (417)
                      +... +|++|+|++|.++.++. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|. +..++.         
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------  117 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLEN---------  117 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTT---------
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCc---------
Confidence            3344 99999999999998876 58999999999999988877777889999999999999964 444442         


Q ss_pred             cccccccc-ceEEcCCCCCCC-CCcccccCCCCCcEEecccccCCccCCcccCCCCCCC----EEEeeccCCCCcchhcc
Q 014835           84 IGIERLAS-CRLVLEDCSSLQ-SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE----TLIVDRTAMREVPESLG  157 (417)
Q Consensus        84 ~~l~~l~~-~~L~L~~n~~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~----~L~L~~n~l~~lp~~l~  157 (417)
                      ..+..+++ +.|++++|.+.. .+|..+..+++|++|++++|.+.+..+..+..+++|+    .|++++|.+..++....
T Consensus       118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~  197 (276)
T 2z62_A          118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  197 (276)
T ss_dssp             CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred             hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence            45788899 999999998876 4799999999999999999998887777777666666    89999999998887777


Q ss_pred             CCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc
Q 014835          158 QLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~  203 (417)
                      ...+|+.|+|++|. ++ .      +|.. +..+ .|+.|++++|+++
T Consensus       198 ~~~~L~~L~L~~n~-l~-~------~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          198 KEIRLKELALDTNQ-LK-S------VPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSCCEEEEECCSSC-CS-C------CCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcccEEECCCCc-ee-e------cCHhHhcccccccEEEccCCccc
Confidence            77799999999999 55 3      5555 4567 9999999999987

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=5.2e-19  Score=169.29  Aligned_cols=176  Identities=19%  Similarity=0.170  Sum_probs=123.2

Q ss_pred             cccEEEeecCCCc-ccCccc--cCCcCcceeeccccccCccccccCCCC-----CCCcEEeeecCCCCCcCCCCCccccC
Q 014835           10 HVYTLELVKVGIK-ELPSSI--ECLSNLKKLYIVDCSMLESISSSIFKL-----KSLQSIEISNCPIFERFTEIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i--~~L~~L~~L~Ls~n~~~~~lp~~l~~L-----~~L~~L~Ls~c~~l~~lp~l~~l~l~   81 (417)
                      +|++|+|++|.++ .+|..+  +.+++|++|+|++|.+.+. |..++.+     ++|++|+|++|.. ..++.       
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~-------  166 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSC-------  166 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCT-------
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchH-------
Confidence            8999999999998 788876  8899999999999877766 7666666     8999999999654 33332       


Q ss_pred             CCcccccccc-ceEEcCCCCCCCC--Ccccc--cCCCCCcEEecccccCCc--cCC-cccCCCCCCCEEEeeccCCCCcc
Q 014835           82 GGIGIERLAS-CRLVLEDCSSLQS--LPSSL--CMFKSLTSLEIIDCQYFM--ILP-DELGNLEALETLIVDRTAMREVP  153 (417)
Q Consensus        82 g~~~l~~l~~-~~L~L~~n~~l~~--lp~~l--~~l~~L~~L~L~~n~~~~--~lp-~~l~~l~~L~~L~L~~n~l~~lp  153 (417)
                        ..+..+++ +.|++++|.+.+.  +|..+  ..+++|++|++++|.+.+  .++ ..+..+++|+.|++++|.+...+
T Consensus       167 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          167 --EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             --TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             --HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence              45667777 7777777766554  33333  677777777777777652  222 22346677777777777775433


Q ss_pred             --hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cC
Q 014835          154 --ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LD  205 (417)
Q Consensus       154 --~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp  205 (417)
                        ..+..+++|++|+|++|. ++ .      +|..+. -.|+.|++++|+|+ +|
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~-l~-~------ip~~~~-~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTG-LK-Q------VPKGLP-AKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSC-CS-S------CCSSCC-SEEEEEECCSSCCCSCC
T ss_pred             chhhhhhcCCCCEEECCCCc-cC-h------hhhhcc-CCceEEECCCCCCCCCh
Confidence              345556777777777777 44 3      665544 46777777777776 54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=5e-18  Score=163.50  Aligned_cols=191  Identities=18%  Similarity=0.272  Sum_probs=154.9

Q ss_pred             cccC-cccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCC-------CcCCCCC
Q 014835            6 VTSC-HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF-------ERFTEIP   76 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l-------~~lp~l~   76 (417)
                      +... +|++|+|++|.++.+ |..++.+++|++|+|++|.+. .+|..+.  ++|++|++++|..-       ..++.+.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            3344 999999999999977 677999999999999997644 6776554  78999999986532       2344555


Q ss_pred             ccccCCC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec
Q 014835           77 SCNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR  146 (417)
Q Consensus        77 ~l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~  146 (417)
                      .++++++         ..+..+++ +.|++++|.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            5666554         34677888 99999999654 5676543  8999999999998888889999999999999999


Q ss_pred             cCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccc
Q 014835          147 TAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELS  210 (417)
Q Consensus       147 n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~  210 (417)
                      |.++.++. .+..+++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.++ +|+..+.
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNK-LV-K------VPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSC-CS-S------CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCc-Cc-c------CChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            99977664 78999999999999998 55 4      88888888 9999999999998 7776553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=3.1e-18  Score=168.79  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=96.6

Q ss_pred             ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835           92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus        92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      +.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.++.+|..+..+++|+.|+|++|+
T Consensus       229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence            5566666654432  46778999999999999999888999999999999999999999999888899999999999998


Q ss_pred             CChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCccccccccccccc
Q 014835          172 RLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIVKDGWMKQ  220 (417)
Q Consensus       172 ~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~~~~~~~n  220 (417)
                       +. .      +|..+..+ .|+.|++++|.++ +|...+..+.......|
T Consensus       307 -l~-~------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          307 -LL-H------VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             -CC-C------CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred             -ce-e------cCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCC
Confidence             54 3      77777778 9999999999988 77655555554333333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=4.4e-18  Score=161.28  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=154.6

Q ss_pred             CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|..+..+++.|+|++|.++.++ ..+..+++|++|+|++|.+.+ ++. ...+++|++|++++| .++.+|       
T Consensus        24 ~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N-~l~~l~-------   93 (290)
T 1p9a_G           24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHN-QLQSLP-------   93 (290)
T ss_dssp             SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSS-CCSSCC-------
T ss_pred             cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEECCCC-cCCcCc-------
Confidence            456544448999999999999775 469999999999999976554 555 378999999999995 566777       


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~  158 (417)
                         ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|+++.+|.. +..
T Consensus        94 ---~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  170 (290)
T 1p9a_G           94 ---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (290)
T ss_dssp             ---CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             ---hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence               46778889 9999999988776678899999999999999998877777789999999999999999998864 578


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +++|+.|+|++|. ++ .      +|..+... .|+.|++++|++.
T Consensus       171 l~~L~~L~L~~N~-l~-~------ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          171 LENLDTLLLQENS-LY-T------IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTCCEEECCSSC-CC-C------CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCCCEEECCCCc-CC-c------cChhhcccccCCeEEeCCCCcc
Confidence            9999999999999 55 4      89888888 9999999999865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.1e-18  Score=177.28  Aligned_cols=186  Identities=15%  Similarity=0.173  Sum_probs=150.4

Q ss_pred             cccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC---CCCCccccCCC--
Q 014835           10 HVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF---TEIPSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l---p~l~~l~l~g~--   83 (417)
                      +|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..|  +..+++|++|+|++|. ++.+   +.+..|+++++  
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCcC
Confidence            7999999999999776 469999999999999988776655  8899999999999974 3333   45555677766  


Q ss_pred             --cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccC-CCCCCCEEEeeccCCCCcchhccCC
Q 014835           84 --IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELG-NLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        84 --~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                        .....+++ +.|+|++|.+.+..|..++.+++|+.|+|++|.+.+..|..+. .+++|+.|+|++|.++.+|. ...+
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l  190 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVF  190 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccC
Confidence              22334677 8899999988887788888899999999999998887777775 78999999999999987765 4468


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      ++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.|+ +|..
T Consensus       191 ~~L~~L~Ls~N~-l~-~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          191 AKLKTLDLSSNK-LA-F------MGPEFQSAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             TTCCEEECCSSC-CC-E------ECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred             CCCCEEECCCCC-CC-C------CCHhHcCCCCccEEEecCCcCcccchh
Confidence            899999999998 55 2      66667777 8999999999988 7664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=7e-18  Score=156.26  Aligned_cols=160  Identities=18%  Similarity=0.217  Sum_probs=137.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|..+..+|+.|+|++|.++.++. .++.+++|++|+|++|.+.+..|..+.++++|++|+|++|. ++.+|.      
T Consensus        28 ~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------  100 (251)
T 3m19_A           28 SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPL------  100 (251)
T ss_dssp             SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT------
T ss_pred             ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccCh------
Confidence            4565544589999999999997766 58999999999999998888777778999999999999964 455553      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                         ..+..+++ +.|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..++.+++|+.|+|++|.+..+|. .+..
T Consensus       101 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  177 (251)
T 3m19_A          101 ---GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR  177 (251)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ---hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence               46788899 999999998776656667899999999999999887767689999999999999999987775 7889


Q ss_pred             CCCCcEEEccCCC
Q 014835          159 LSSLKILVLSNIK  171 (417)
Q Consensus       159 L~~L~~L~L~~n~  171 (417)
                      +++|+.|+|++|+
T Consensus       178 l~~L~~L~l~~N~  190 (251)
T 3m19_A          178 LGKLQTITLFGNQ  190 (251)
T ss_dssp             CTTCCEEECCSCC
T ss_pred             CCCCCEEEeeCCc
Confidence            9999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.77  E-value=5.1e-18  Score=176.64  Aligned_cols=205  Identities=19%  Similarity=0.156  Sum_probs=167.4

Q ss_pred             CCCCcccC--cccEEEeecCCCccc-CccccCCcCcceeeccccccCcccccc-CCCCCCCcEEeeecCCC---------
Q 014835            2 NFPSVTSC--HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSS-IFKLKSLQSIEISNCPI---------   68 (417)
Q Consensus         2 ~lP~~~~~--~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~L~~L~~L~Ls~c~~---------   68 (417)
                      ++|+.+..  +|++|++++|.++.+ |..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|..         
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  371 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ  371 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence            46664444  999999999999976 446999999999999999888777654 88999999999999753         


Q ss_pred             CCcCCCCCccccCCC-------cccccccc-ceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCcccCCCCCC
Q 014835           69 FERFTEIPSCNIDGG-------IGIERLAS-CRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPDELGNLEAL  139 (417)
Q Consensus        69 l~~lp~l~~l~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L  139 (417)
                      +..++.+..++++++       ..+..+++ +.|++++|.+.+..|. .+..+++|+.|++++|.+.+..|..++.+++|
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            334556666777776       46778889 9999999988776654 48899999999999999988889999999999


Q ss_pred             CEEEeeccCCCC--c--chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccccc
Q 014835          140 ETLIVDRTAMRE--V--PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIV  213 (417)
Q Consensus       140 ~~L~L~~n~l~~--l--p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~  213 (417)
                      ++|++++|.+..  +  +..+..+++|+.|++++|. +++.      .|..+..+ .|+.|++++|.++ +++..+..+.
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSI------DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCcc------ChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            999999999954  2  2568899999999999998 5545      57778888 9999999999987 5555455444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=1.4e-18  Score=166.67  Aligned_cols=187  Identities=15%  Similarity=0.156  Sum_probs=140.7

Q ss_pred             cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC--CCcCCCCCccccCCC---
Q 014835           10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI--FERFTEIPSCNIDGG---   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~--l~~lp~l~~l~l~g~---   83 (417)
                      +|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..|  +..+++|++|++++|..  +...+.+..++++++   
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence            79999999999998774 69999999999999987766544  88999999999999742  122345555666665   


Q ss_pred             -cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc-CCCCCCCEEEeeccCCCCcchhccCCC
Q 014835           84 -IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL-GNLEALETLIVDRTAMREVPESLGQLS  160 (417)
Q Consensus        84 -~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~l~~L~  160 (417)
                       .....+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.+|. ...++
T Consensus       113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~  191 (317)
T 3o53_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFA  191 (317)
T ss_dssp             EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCT
T ss_pred             CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccc
Confidence             22334667 888888887776666677778888888888888777666655 467888888888888877754 33578


Q ss_pred             CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      +|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.++ +|..
T Consensus       192 ~L~~L~Ls~N~-l~-~------l~~~~~~l~~L~~L~L~~N~l~~l~~~  232 (317)
T 3o53_A          192 KLKTLDLSSNK-LA-F------MGPEFQSAAGVTWISLRNNKLVLIEKA  232 (317)
T ss_dssp             TCCEEECCSSC-CC-E------ECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred             cCCEEECCCCc-CC-c------chhhhcccCcccEEECcCCcccchhhH
Confidence            88888888887 44 2      66667677 8888888888877 6653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.76  E-value=2.1e-18  Score=179.60  Aligned_cols=181  Identities=14%  Similarity=0.089  Sum_probs=151.9

Q ss_pred             cccEEEeecCCCccc---CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835           10 HVYTLELVKVGIKEL---PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI   86 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~l---p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l   86 (417)
                      +|++|++++|.++.+   |..+..+++|++|++++|.+. .+|..+..+++|++|++++|...+..|.         ..+
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~  420 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF---------SAF  420 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTT---------TTT
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccCh---------hhh
Confidence            899999999999865   777899999999999997644 5778899999999999999754443332         357


Q ss_pred             ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCc
Q 014835           87 ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLK  163 (417)
Q Consensus        87 ~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~  163 (417)
                      ..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+..+ |..+..+++|+
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence            77888 999999998888888889999999999999998877 4788899999999999999999655 56788999999


Q ss_pred             EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      .|+|++|+ +++.      .|..+..+ .|+.|++++|.++ +|..
T Consensus       501 ~L~Ls~N~-l~~~------~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          501 LLNMSHNN-LLFL------DSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             EEECCSSC-CSCE------EGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             EEECCCCc-CCCc------CHHHccCCCcCCEEECCCCcCcccCHh
Confidence            99999998 5544      57777788 9999999999988 7765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=1.8e-18  Score=165.60  Aligned_cols=180  Identities=17%  Similarity=0.162  Sum_probs=147.2

Q ss_pred             cccEEEeecCCCc--ccCcccc-------CCcCcceeeccccccCccccccC--CCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835           10 HVYTLELVKVGIK--ELPSSIE-------CLSNLKKLYIVDCSMLESISSSI--FKLKSLQSIEISNCPIFERFTEIPSC   78 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--~lp~~i~-------~L~~L~~L~Ls~n~~~~~lp~~l--~~L~~L~~L~Ls~c~~l~~lp~l~~l   78 (417)
                      .|+.|+|++|.++  .+|..+.       .+++|++|+|++|.+.+.+|..+  ..+++|++|+|++|. +..+|     
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-----  137 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD-----  137 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS-----
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh-----
Confidence            5888999999986  5777665       79999999999999988899876  899999999999964 44445     


Q ss_pred             ccCCCcccccc-----cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCcc--CCccc--CCCCCCCEEEeeccC
Q 014835           79 NIDGGIGIERL-----AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI--LPDEL--GNLEALETLIVDRTA  148 (417)
Q Consensus        79 ~l~g~~~l~~l-----~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~--lp~~l--~~l~~L~~L~L~~n~  148 (417)
                           ..+..+     ++ ++|++++|.+.+..|..+..+++|++|++++|.+.+.  +|..+  +.+++|++|++++|.
T Consensus       138 -----~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          138 -----AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             -----SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             -----HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence                 455555     78 9999999998887778999999999999999998765  34444  889999999999999


Q ss_pred             CCCcch----hccCCCCCcEEEccCCCCChhhhhcccCCC-CccccC-CcceeecCCCccc-cCcC
Q 014835          149 MREVPE----SLGQLSSLKILVLSNIKRLPEYLQLHLQLP-ENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       149 l~~lp~----~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp-~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      ++.++.    .+..+++|+.|+|++|. +++.      .| ..+..+ .|+.|++++|.|+ +|..
T Consensus       213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          213 METPSGVCSALAAARVQLQGLDLSHNS-LRDA------AGAPSCDWPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS------CCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred             CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc------cchhhhhhcCCCCEEECCCCccChhhhh
Confidence            985442    34678999999999998 5534      43 344456 9999999999988 7765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=1.8e-17  Score=159.81  Aligned_cols=191  Identities=22%  Similarity=0.319  Sum_probs=147.4

Q ss_pred             cccC-cccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-------CCcCCCCC
Q 014835            6 VTSC-HVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-------FERFTEIP   76 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~   76 (417)
                      +... +|++|+|++|.++.+ |..++.+++|++|+|++|.+. .+|..+.  ++|++|++++|..       +..++.+.
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            3344 899999999999976 557899999999999997654 6776554  7889999888643       22334445


Q ss_pred             ccccCCC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec
Q 014835           77 SCNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR  146 (417)
Q Consensus        77 ~l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~  146 (417)
                      .++++++         ..+..+ + +.|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            5666655         234445 6 88999998654 4676553  7899999999998888778899999999999999


Q ss_pred             cCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835          147 TAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE  211 (417)
Q Consensus       147 n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~  211 (417)
                      |.++.++. .+..+++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.++ +|...+..
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNK-LS-R------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSC-CC-B------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCc-Ce-e------cChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            99977664 78889999999999998 55 4      88888888 9999999999988 77665443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.1e-17  Score=174.12  Aligned_cols=176  Identities=14%  Similarity=0.075  Sum_probs=95.2

Q ss_pred             cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      +|++|+|++|.++.+|+ .++.+++|++|+|++|.+.+..|..++++++|++|+|++| .+..+|.         ..+..
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~---------~~~~~  145 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR---------GIFHN  145 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---------TTTTT
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCH---------HHhcc
Confidence            55555555555554443 4555555555555555554444444555555555555554 2223331         22455


Q ss_pred             ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCC--------------------------------
Q 014835           89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGN--------------------------------  135 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~--------------------------------  135 (417)
                      +++ +.|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..                                
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV  225 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred             CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence            666 66666666665555555666666666666666544321111111                                


Q ss_pred             -----CCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          136 -----LEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       136 -----l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                           .++|+.|+|++|.+... ..+..+++|+.|+|++|. +.+.      .|..+..+ .|+.|++++|.++
T Consensus       226 ~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~------~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          226 VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE-LEKI------MYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             EECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCEE------ESGGGTTCSSCCEEECTTSCCC
T ss_pred             cccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCc-cCCC------CHHHhcCccCCCEEECCCCCCC
Confidence                 12344444444444332 345666777777777776 4434      45566666 7777777777766

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=167.69  Aligned_cols=197  Identities=18%  Similarity=0.161  Sum_probs=148.7

Q ss_pred             cccC-cccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCC
Q 014835            6 VTSC-HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGG   83 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~   83 (417)
                      +... +|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..+..+.++++|++|++++| .++.+|..        
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~--------  142 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGET--------  142 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSS--------
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCch--------
Confidence            4444 99999999999997754 5999999999999998776544455889999999999996 45555520        


Q ss_pred             cccccccc-ceEEcCCCCCCCCC-cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhc-cCCC
Q 014835           84 IGIERLAS-CRLVLEDCSSLQSL-PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESL-GQLS  160 (417)
Q Consensus        84 ~~l~~l~~-~~L~L~~n~~l~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l-~~L~  160 (417)
                      ..+..+++ +.|++++|...+.+ |..+..+++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+ ..++
T Consensus       143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  222 (353)
T 2z80_A          143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS  222 (353)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT
T ss_pred             hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc
Confidence            25677888 99999998544444 567888999999999999888888888899999999999999988877643 4588


Q ss_pred             CCcEEEccCCCCChhhhhc-------------------------ccCCCCccccC-CcceeecCCCccc-cCcCccccc
Q 014835          161 SLKILVLSNIKRLPEYLQL-------------------------HLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEI  212 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~-------------------------~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l  212 (417)
                      +|+.|++++|. +++....                         ...+|..+..+ .|+.|++++|.++ +|...+..+
T Consensus       223 ~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l  300 (353)
T 2z80_A          223 SVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL  300 (353)
T ss_dssp             TEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC
Confidence            88899988887 4421000                         00134445667 8999999999988 776543333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=2.1e-17  Score=160.00  Aligned_cols=188  Identities=18%  Similarity=0.231  Sum_probs=116.3

Q ss_pred             CCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC---------
Q 014835            3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF---------   72 (417)
Q Consensus         3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l---------   72 (417)
                      +|.+... +|++|+|++|.++.+| .+..+++|++|++++|.+.+ +|. +..+++|++|++++|..+..+         
T Consensus        81 ~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L  157 (347)
T 4fmz_A           81 ISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGL  157 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred             chhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence            3443344 6777777777666665 36666677777776655433 333 555666666666665433222         


Q ss_pred             -------------------CCCCccccCCC-----cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc
Q 014835           73 -------------------TEIPSCNIDGG-----IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM  127 (417)
Q Consensus        73 -------------------p~l~~l~l~g~-----~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~  127 (417)
                                         +.+..++++++     ..+..+++ +.|++++|.+....+  +..+++|++|++++|.+..
T Consensus       158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             cEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence                               22233333333     22334444 455555544333222  6678888899998888655


Q ss_pred             cCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835          128 ILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD  205 (417)
Q Consensus       128 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp  205 (417)
                      ..+  +..+++|++|++++|.++.++ .+..+++|+.|++++|. ++ .      ++ .+..+ .|+.|++++|.++ .+
T Consensus       236 ~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~-~------~~-~~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          236 LSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-IS-D------IS-VLNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CC-C------CG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred             Ccc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc-cC-C------Ch-hhcCCCCCCEEECcCCcCCCcC
Confidence            433  788888999999888887774 57888888888888887 44 2      43 45666 8888888888876 44


Q ss_pred             cC
Q 014835          206 PN  207 (417)
Q Consensus       206 ~~  207 (417)
                      +.
T Consensus       304 ~~  305 (347)
T 4fmz_A          304 ME  305 (347)
T ss_dssp             HH
T ss_pred             hh
Confidence            33

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=1.9e-17  Score=158.20  Aligned_cols=167  Identities=20%  Similarity=0.258  Sum_probs=133.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|++|+++++.++.+| .+..+++|++|+|++|.+.+ ++. +..+++|++|++++|. ++.++           .+..+
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-l~~~~-----------~~~~l  106 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-LKNVS-----------AIAGL  106 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-CSCCG-----------GGTTC
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-CCCch-----------hhcCC
Confidence            8999999999999988 58999999999999986554 555 8899999999999964 44443           56778


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|++++|.+.. +|. +..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+..++. +..+++|+.|+++
T Consensus       107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD  181 (308)
T ss_dssp             TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECC
Confidence            88 889999887654 443 7888899999999888665433  7788889999999998888776 8888899999999


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD  205 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp  205 (417)
                      +|. ++ .      ++. +..+ .|+.|++++|.++ ++
T Consensus       182 ~n~-l~-~------~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          182 DNK-IS-D------ISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSC-CC-C------CGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCc-cC-c------Chh-hcCCCCCCEEEccCCccCccc
Confidence            888 54 2      443 6667 8899999999877 44

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.74  E-value=1.1e-16  Score=161.30  Aligned_cols=180  Identities=19%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC----CCcCCCCCccccCCC--
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI----FERFTEIPSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~----l~~lp~l~~l~l~g~--   83 (417)
                      +|++|+|++|.++.+|  ++.+++|++|++++|.+.+ +|  ++++++|++|++++|..    +..++.+..++++++  
T Consensus        65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l  139 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTL  139 (457)
T ss_dssp             TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCC
T ss_pred             CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcc
Confidence            4444444444444443  4444444444444443332 22  44444445555444321    111122222333332  


Q ss_pred             --cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCC
Q 014835           84 --IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLS  160 (417)
Q Consensus        84 --~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~  160 (417)
                        ..++.+++ +.|++++|...+.+  .+..+++|++|++++|.+.+ +|  ++.+++|+.|++++|.++.++  ++.++
T Consensus       140 ~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~  212 (457)
T 3bz5_A          140 TEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNI  212 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred             ceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCC
Confidence              12334444 44555444444433  24455555555555555443 33  455555555555555555442  55566


Q ss_pred             CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835          161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE  211 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~  211 (417)
                      +|+.|++++|+ ++ .      +|  +..+ .|+.|++++|.++ +|...+..
T Consensus       213 ~L~~L~Ls~N~-l~-~------ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          213 QLTFLDCSSNK-LT-E------ID--VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             TCSEEECCSSC-CS-C------CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             CCCEEECcCCc-cc-c------cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence            66666666665 33 1      44  4455 6777777777766 55443433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=1.1e-17  Score=174.14  Aligned_cols=184  Identities=17%  Similarity=0.153  Sum_probs=129.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.-...+|++|+|++|.++.+++ .++.+++|++|+|++|.+.+..|..|.++++|++|+|++|......|       
T Consensus        25 ~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-------   97 (606)
T 3vq2_A           25 KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-------   97 (606)
T ss_dssp             SCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-------
T ss_pred             cCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-------
Confidence            4555433478888888888887665 57788888888888877666667777788888888888764333334       


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcc-hhcc
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVP-ESLG  157 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~  157 (417)
                         ..++++++ ++|++++|.+.+..|..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+..++ ..++
T Consensus        98 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  174 (606)
T 3vq2_A           98 ---GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ  174 (606)
T ss_dssp             ---TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred             ---hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence               46777777 888888887666555677788888888888887765 56777888888888888888876553 3454


Q ss_pred             CCCCC----cEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          158 QLSSL----KILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       158 ~L~~L----~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      .+++|    ..|++++|. ++ .      ++...... .|+.|++++|.++
T Consensus       175 ~l~~L~~~l~~L~l~~n~-l~-~------~~~~~~~~~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          175 FLRENPQVNLSLDMSLNP-ID-F------IQDQAFQGIKLHELTLRGNFNS  217 (606)
T ss_dssp             HHHHCTTCCCEEECTTCC-CC-E------ECTTTTTTCEEEEEEEESCCSC
T ss_pred             hhhccccccceeeccCCC-cc-e------eCcccccCceeeeeeccCCccc
Confidence            44444    378888877 44 2      55565666 7888888887653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=3e-17  Score=159.61  Aligned_cols=200  Identities=18%  Similarity=0.183  Sum_probs=150.4

Q ss_pred             CCCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccc-cCCCCCCCcEEeeecCCCCCcCCCCCcc
Q 014835            1 MNFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISS-SIFKLKSLQSIEISNCPIFERFTEIPSC   78 (417)
Q Consensus         1 ~~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~-~l~~L~~L~~L~Ls~c~~l~~lp~l~~l   78 (417)
                      +++|.-+..++++|+|++|+|+.||.. |..+++|++|+|++|.+.+.+|. .|.++++|+.+.+.+++.+..++.    
T Consensus        22 t~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~----   97 (350)
T 4ay9_X           22 TEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP----   97 (350)
T ss_dssp             CSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT----
T ss_pred             CccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc----
Confidence            356654433788889998888888874 78888899999988887777764 467788887766555566666653    


Q ss_pred             ccCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCC-CCCEEEeeccCCCCcchh
Q 014835           79 NIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLE-ALETLIVDRTAMREVPES  155 (417)
Q Consensus        79 ~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~-~L~~L~L~~n~l~~lp~~  155 (417)
                           ..+..+++ +.|++++|.+....+..+....++..|++.++.....+| ..+..+. .++.|++++|.++.+|..
T Consensus        98 -----~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~  172 (350)
T 4ay9_X           98 -----EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS  172 (350)
T ss_dssp             -----TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred             -----hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence                 56788888 999999987766555556667778888887765455554 3455554 688999999999999888


Q ss_pred             ccCCCCCcEEEccCCCCChhhhhcccCCCCcc-ccC-CcceeecCCCccc-cCcCccccccccc
Q 014835          156 LGQLSSLKILVLSNIKRLPEYLQLHLQLPENG-LEG-IPEYLRRSPRKLT-LDPNELSEIVKDG  216 (417)
Q Consensus       156 l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l-~~l-~L~~L~l~~n~L~-lp~~~L~~l~~~~  216 (417)
                      +....+|+.|++++++.++ .      +|... ..+ .|+.|++++|+|+ +|+..+..+..+.
T Consensus       173 ~f~~~~L~~l~l~~~n~l~-~------i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          173 AFNGTQLDELNLSDNNNLE-E------LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             SSTTEEEEEEECTTCTTCC-C------CCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             hccccchhHHhhccCCccc-C------CCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence            7788899999998765566 4      77654 556 9999999999998 8887666666443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=1.7e-16  Score=163.83  Aligned_cols=99  Identities=16%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC-----CC
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT-----EI   75 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-----~l   75 (417)
                      .+|.....+|++|+|++|.++.+|+ .++.+++|++|+|++|.+.+..|..+.++++|++|+|++|. ++.+|     .+
T Consensus        45 ~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L  123 (562)
T 3a79_B           45 HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASL  123 (562)
T ss_dssp             SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTC
T ss_pred             cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccC
Confidence            3454333367777777777776664 57777777777777776666666667777777777777753 33443     23


Q ss_pred             CccccCCC--------cccccccc-ceEEcCCCCC
Q 014835           76 PSCNIDGG--------IGIERLAS-CRLVLEDCSS  101 (417)
Q Consensus        76 ~~l~l~g~--------~~l~~l~~-~~L~L~~n~~  101 (417)
                      ..|+++++        ..++++++ +.|++++|.+
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            33444444        23555556 6666665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.73  E-value=3.7e-17  Score=168.63  Aligned_cols=183  Identities=19%  Similarity=0.186  Sum_probs=105.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCC-----cCCCCCccccCCC-
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFE-----RFTEIPSCNIDGG-   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~-----~lp~l~~l~l~g~-   83 (417)
                      +|+.|++++|.++.+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|....     .+|.+..++++++ 
T Consensus       283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             cccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            8888888888888888887777 8888888887654 5554  356666777766654332     3344444555444 


Q ss_pred             --------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCC-Cc
Q 014835           84 --------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMR-EV  152 (417)
Q Consensus        84 --------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~-~l  152 (417)
                              ..+..+++ +.|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. ..
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             cCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence                    12334555 666666654433 23335555666666666655544433 34555556666666665553 33


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      |..+..+++|+.|++++|....+.      +|..+..+ .|+.|++++|.++
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~------~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENF------LPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGE------ECSCCTTCTTCCEEECTTSCCC
T ss_pred             hhhhhcCCcCcEEECcCCcCcccc------chhhhhcccCCCEEECCCCccc
Confidence            445555556666666555521123      45455555 5555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=4e-17  Score=155.92  Aligned_cols=176  Identities=20%  Similarity=0.244  Sum_probs=136.3

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.+... +|++|+|++|.++.++. +..+++|++|+|++|.+. .+| .+..+++|++|++++|. +..++       
T Consensus        55 ~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~-l~~~~-------  123 (308)
T 1h6u_A           55 TIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQ-ITDVT-------  123 (308)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSC-CCCCG-------
T ss_pred             CchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCC-CCCch-------
Confidence            45666566 89999999999988887 888999999999987654 455 48888999999999864 34333       


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                          .+..+++ +.|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+..++. +..+
T Consensus       124 ----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l  194 (308)
T 1h6u_A          124 ----PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASL  194 (308)
T ss_dssp             ----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred             ----hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCC
Confidence                4777888 8999998866543 33 7788999999999988665 343 8888999999999999988775 7888


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~  206 (417)
                      ++|++|+|++|. +.+       ++ .+..+ .|+.|++++|+++ .|.
T Consensus       195 ~~L~~L~L~~N~-l~~-------~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          195 PNLIEVHLKNNQ-ISD-------VS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TTCCEEECTTSC-CCB-------CG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCEEEccCCc-cCc-------cc-cccCCCCCCEEEccCCeeecCCe
Confidence            899999999988 542       44 36667 8899999988876 443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=3e-17  Score=146.37  Aligned_cols=147  Identities=16%  Similarity=0.202  Sum_probs=73.1

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|++|++++|.++.+| .+..+++|++|++++|. ...++ .+..+++|++|++++|..-...+          ..+..+
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~----------~~l~~l  111 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKI----------PNLSGL  111 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGS----------CCCTTC
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccC----------hhhcCC
Confidence            6677777777777666 46667777777777662 33333 46666777777777653222122          233344


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|++++|.+....|..+..+++|++|++++|...+.+| .+..+++|+.|++++|.+..++ .+..+++|+.|+++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence            44 444444444443344444444444444444444233333 2444444444444444444443 34444444444444


Q ss_pred             CCC
Q 014835          169 NIK  171 (417)
Q Consensus       169 ~n~  171 (417)
                      +|+
T Consensus       190 ~N~  192 (197)
T 4ezg_A          190 SQT  192 (197)
T ss_dssp             BC-
T ss_pred             Ccc
Confidence            443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=2.6e-17  Score=157.29  Aligned_cols=174  Identities=17%  Similarity=0.114  Sum_probs=117.6

Q ss_pred             cccEEEeecCCCc-ccCccc--cCCcCcceeeccccccCcccc----ccCCCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835           10 HVYTLELVKVGIK-ELPSSI--ECLSNLKKLYIVDCSMLESIS----SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG   82 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i--~~L~~L~~L~Ls~n~~~~~lp----~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g   82 (417)
                      +|++|+|++|.++ .+|..+  +.+++|++|+|++|.+.+..|    ..+..+++|++|+|++|......+         
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---------  162 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC---------  162 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT---------
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH---------
Confidence            5889999999887 566666  888999999999988776544    345578899999999865433222         


Q ss_pred             Ccccccccc-ceEEcCCCCCCCC--C--cccccCCCCCcEEecccccCCccCCc----ccCCCCCCCEEEeeccCCCCc-
Q 014835           83 GIGIERLAS-CRLVLEDCSSLQS--L--PSSLCMFKSLTSLEIIDCQYFMILPD----ELGNLEALETLIVDRTAMREV-  152 (417)
Q Consensus        83 ~~~l~~l~~-~~L~L~~n~~l~~--l--p~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l~~L~~L~L~~n~l~~l-  152 (417)
                       ..+..+++ ++|+|++|.+.+.  +  +..+..+++|++|++++|.+. .++.    .++.+++|++|+|++|.++.+ 
T Consensus       163 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  240 (310)
T 4glp_A          163 -EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATV  240 (310)
T ss_dssp             -TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred             -HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence             45667777 7777777765542  2  222356777777777777754 2222    245667777777777777554 


Q ss_pred             chhccCC---CCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc
Q 014835          153 PESLGQL---SSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT  203 (417)
Q Consensus       153 p~~l~~L---~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~  203 (417)
                      |..+..+   ++|++|+|++|. ++ .      +|..+. -.|+.|++++|.|+
T Consensus       241 p~~~~~~~~~~~L~~L~Ls~N~-l~-~------lp~~~~-~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          241 NPSAPRCMWSSALNSLNLSFAG-LE-Q------VPKGLP-AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CSCCSSCCCCTTCCCEECCSSC-CC-S------CCSCCC-SCCSCEECCSCCCC
T ss_pred             hhhHHhccCcCcCCEEECCCCC-CC-c------hhhhhc-CCCCEEECCCCcCC
Confidence            6555555   577777777777 44 3      665442 27777777777766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=9.2e-18  Score=172.54  Aligned_cols=160  Identities=18%  Similarity=0.231  Sum_probs=113.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccC-ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|+....+|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..|..+.++++|++|+|++|.. ..++.      
T Consensus        19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~------   91 (549)
T 2z81_A           19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSS------   91 (549)
T ss_dssp             SCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CSCCH------
T ss_pred             cccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc-CccCH------
Confidence            567644448999999999999764 5699999999999999988877778899999999999999643 33331      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCC-CCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCC-Ccchhc
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQ-SLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMR-EVPESL  156 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~l  156 (417)
                         ..++.+++ ++|++++|.+.+ ..|..+..+++|++|++++|...+.+| ..++.+++|++|++++|.+. .+|..+
T Consensus        92 ---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A           92 ---SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             ---HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             ---HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence               33666666 777777776554 345566667777777777766444444 45666777777777777664 355566


Q ss_pred             cCCCCCcEEEccCCC
Q 014835          157 GQLSSLKILVLSNIK  171 (417)
Q Consensus       157 ~~L~~L~~L~L~~n~  171 (417)
                      +.+++|+.|+++.|.
T Consensus       169 ~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          169 KSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCSEEEEEEEECSB
T ss_pred             hccccCceEecccCc
Confidence            666666666666655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=3e-17  Score=166.82  Aligned_cols=182  Identities=14%  Similarity=0.051  Sum_probs=150.1

Q ss_pred             cccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCC----cCCCCCcccc
Q 014835            6 VTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFE----RFTEIPSCNI   80 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~----~lp~l~~l~l   80 (417)
                      +... +|++|+|++|.++.+++ ++.+++|++|+|++|.+.+ +|.    .++|++|++++|....    .++.+..+++
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L  127 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV----GPSIETLHAANNNISRVSCSRGQGKKNIYL  127 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE----CTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred             HhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC----CCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence            3344 99999999999997766 9999999999999986543 443    2788899988865432    2445555666


Q ss_pred             CCC-------cccccccc-ceEEcCCCCCCCCCccccc-CCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC
Q 014835           81 DGG-------IGIERLAS-CRLVLEDCSSLQSLPSSLC-MFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE  151 (417)
Q Consensus        81 ~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~-~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~  151 (417)
                      +++       ..+..+++ +.|+|++|.+.+..|..+. .+++|+.|+|++|.+.+. | ....+++|+.|+|++|.++.
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC
Confidence            665       46778899 9999999999888888876 799999999999997766 3 24469999999999999999


Q ss_pred             cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          152 VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       152 lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +|..+..+++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.+.
T Consensus       206 ~~~~~~~l~~L~~L~Ls~N~-l~-~------lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          206 MGPEFQSAAGVTWISLRNNK-LV-L------IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECGGGGGGTTCSEEECTTSC-CC-E------ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCHhHcCCCCccEEEecCCc-Cc-c------cchhhccCCCCCEEEcCCCCCc
Confidence            98889999999999999999 55 3      78888888 9999999999976

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.5e-17  Score=155.15  Aligned_cols=169  Identities=20%  Similarity=0.230  Sum_probs=142.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|+.|++++|.++.+|. +..+++|++|+|++|.+.+ ++. +.++++|++|++++|. +..+|           .+..+
T Consensus        47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~-----------~l~~l  111 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK-VKDLS-----------SLKDL  111 (291)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCGG-----------GGTTC
T ss_pred             cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc-CCCCh-----------hhccC
Confidence            89999999999999975 8999999999999987665 444 8899999999999964 44443           57888


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|++++|.+.. + ..+..+++|+.|++++|.+.+.  ..++.+++|+.|++++|.++.++. +..+++|+.|+|+
T Consensus       112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~  186 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS  186 (291)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECC
Confidence            89 999999997655 4 4678899999999999987664  568899999999999999988876 8999999999999


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      +|. ++ .      +| .+..+ .|+.|++++|+++ .|..
T Consensus       187 ~N~-i~-~------l~-~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          187 KNH-IS-D------LR-ALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             SSC-CC-B------CG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             CCc-CC-C------Ch-hhccCCCCCEEECcCCcccCCccc
Confidence            998 55 2      55 47777 9999999999976 4443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=3.2e-17  Score=157.21  Aligned_cols=178  Identities=15%  Similarity=0.047  Sum_probs=146.1

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCC----CcCCCCCccccCCC--
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIF----ERFTEIPSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l----~~lp~l~~l~l~g~--   83 (417)
                      +|++|+|++|.++.+++ +..+++|++|+|++|.+.+ +|    ..++|++|++++|...    ..++.+..++++++  
T Consensus        59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l  132 (317)
T 3o53_A           59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI  132 (317)
T ss_dssp             TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCC
T ss_pred             cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCC
Confidence            89999999999997776 9999999999999986543 33    2378888888886532    23445555666665  


Q ss_pred             -----cccccccc-ceEEcCCCCCCCCCcccc-cCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhc
Q 014835           84 -----IGIERLAS-CRLVLEDCSSLQSLPSSL-CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESL  156 (417)
Q Consensus        84 -----~~l~~l~~-~~L~L~~n~~l~~lp~~l-~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l  156 (417)
                           ..+..+++ +.|++++|.+.+..|..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.++.+|..+
T Consensus       133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~  210 (317)
T 3o53_A          133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEF  210 (317)
T ss_dssp             CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGG
T ss_pred             CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhh
Confidence                 36677889 999999998887767766 4789999999999997665 3 3445999999999999999999889


Q ss_pred             cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          157 GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       157 ~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ..+++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|++.
T Consensus       211 ~~l~~L~~L~L~~N~-l~-~------l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          211 QSAAGVTWISLRNNK-LV-L------IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGTTCSEEECTTSC-CC-E------ECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccCcccEEECcCCc-cc-c------hhhHhhcCCCCCEEEccCCCcc
Confidence            999999999999998 55 4      88888888 9999999999976

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=5.1e-17  Score=171.47  Aligned_cols=164  Identities=18%  Similarity=0.194  Sum_probs=139.7

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.....+|++|+|++|.++.+|.. ++.+++|++|+|++|.+.+..|..++++++|++|+|++| .+..+|.      
T Consensus        18 ~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~------   90 (680)
T 1ziw_A           18 QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSD------   90 (680)
T ss_dssp             SCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCT------
T ss_pred             ccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccCh------
Confidence            46765445899999999999988874 999999999999999888888888999999999999996 5556663      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hc--
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SL--  156 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l--  156 (417)
                         ..+..+++ ++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.+..++. .+  
T Consensus        91 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  167 (680)
T 1ziw_A           91 ---KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI  167 (680)
T ss_dssp             ---TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred             ---hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence               46888999 999999998876667889999999999999999988888889999999999999999977654 33  


Q ss_pred             cCCCCCcEEEccCCCCChhh
Q 014835          157 GQLSSLKILVLSNIKRLPEY  176 (417)
Q Consensus       157 ~~L~~L~~L~L~~n~~l~~~  176 (417)
                      ..+++|+.|++++|. +++.
T Consensus       168 ~~~~~L~~L~L~~n~-l~~~  186 (680)
T 1ziw_A          168 FANSSLKKLELSSNQ-IKEF  186 (680)
T ss_dssp             GTTCEESEEECTTCC-CCCB
T ss_pred             cccccccEEECCCCc-cccc
Confidence            356899999999997 5433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=5.2e-17  Score=175.73  Aligned_cols=184  Identities=18%  Similarity=0.169  Sum_probs=148.7

Q ss_pred             CCCCcccCcccEEEeecCCCccc-CccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      .+|. ...+|++|+|++|.|+.+ |..++.+++|++|+|++|...+.+ |..+.++++|++|+|++|......|      
T Consensus        18 ~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p------   90 (844)
T 3j0a_A           18 QVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP------   90 (844)
T ss_dssp             CCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT------
T ss_pred             CCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH------
Confidence            5677 333899999999999976 557999999999999998777777 7789999999999999976544445      


Q ss_pred             cCCCcccccccc-ceEEcCCCCCCCCCccc--ccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCC-Ccch
Q 014835           80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSS--LCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMR-EVPE  154 (417)
Q Consensus        80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~--l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~-~lp~  154 (417)
                          ..+..+++ ++|+|++|.+.+.+|..  +..+++|++|+|++|.+.+..+ ..++++++|++|++++|.+. ..|.
T Consensus        91 ----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           91 ----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             ----TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             ----hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence                57888999 99999999888766665  8899999999999999877654 57899999999999999985 4556


Q ss_pred             hccCC--CCCcEEEccCCCCChhhhhcccCCCCccccC-------CcceeecCCCccc
Q 014835          155 SLGQL--SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-------IPEYLRRSPRKLT  203 (417)
Q Consensus       155 ~l~~L--~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-------~L~~L~l~~n~L~  203 (417)
                      .+..+  ++|+.|++++|. +.+.      .|..+...       .|+.|++++|.++
T Consensus       167 ~l~~l~~~~L~~L~L~~n~-l~~~------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANS-LYSR------VSVDWGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSB-SCCC------CCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             HcccccCCccceEECCCCc-cccc------cccchhhcCCccccCceeEEecCCCcCc
Confidence            67666  889999999998 4434      44443333       4899999998654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.71  E-value=7.2e-17  Score=164.89  Aligned_cols=174  Identities=14%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             cccEEEeecCCCcccC-ccccCC---cCcceeecccc----------------------ccCccccccCCCCCCCcEEee
Q 014835           10 HVYTLELVKVGIKELP-SSIECL---SNLKKLYIVDC----------------------SMLESISSSIFKLKSLQSIEI   63 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp-~~i~~L---~~L~~L~Ls~n----------------------~~~~~lp~~l~~L~~L~~L~L   63 (417)
                      +|+.+++++|.+ .+| ..+..+   .+|+.|++++|                      .+.+.+|..++++++|++|++
T Consensus       277 ~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  355 (520)
T 2z7x_B          277 ALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL  355 (520)
T ss_dssp             EEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred             eeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence            677777777766 566 233332   34555555554                      444434444444444444444


Q ss_pred             ecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccc-ccCCCCCcEEecccccCCccCCcccCCCCCCCE
Q 014835           64 SNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSS-LCMFKSLTSLEIIDCQYFMILPDELGNLEALET  141 (417)
Q Consensus        64 s~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~  141 (417)
                      ++|.. ..++.++       ..+..+++ +.|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+.  ++|+.
T Consensus       356 ~~N~l-~~l~~~~-------~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~  425 (520)
T 2z7x_B          356 QMNQL-KELSKIA-------EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV  425 (520)
T ss_dssp             CSSCC-CBHHHHH-------HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred             cCCcc-Cccccch-------HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence            44321 1111000       22444444 55555555444434432 34445555555555554444444332  44555


Q ss_pred             EEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCcc
Q 014835          142 LIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKL  202 (417)
Q Consensus       142 L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L  202 (417)
                      |++++|.++.+|..+..+++|++|+|++|+ ++ .      +|.. +..+ .|+.|++++|++
T Consensus       426 L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~-~------l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          426 LDLHSNKIKSIPKQVVKLEALQELNVASNQ-LK-S------VPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSSCCCCCCGGGGGCTTCCEEECCSSC-CC-C------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcccccchhhhcCCCCCEEECCCCc-CC-c------cCHHHhccCCcccEEECcCCCC
Confidence            555555555555444455555555555554 32 2      4433 3334 455555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.71  E-value=2.6e-16  Score=158.54  Aligned_cols=191  Identities=17%  Similarity=0.168  Sum_probs=150.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC----CCcCCCCCccccCCC--
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI----FERFTEIPSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~----l~~lp~l~~l~l~g~--   83 (417)
                      +|++|++++|.++.+| .++.+++|++|+|++|.+.+ +|  ++.+++|++|++++|..    +..++.+..++++++  
T Consensus        43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcC
Confidence            8999999999999998 59999999999999987665 45  88999999999999753    233445555666666  


Q ss_pred             --cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCC
Q 014835           84 --IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLS  160 (417)
Q Consensus        84 --~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~  160 (417)
                        ..+..+++ +.|++++|.+.+ ++  ++.+++|++|++++|...+.+  .++.+++|+.|++++|.++.+|  +..++
T Consensus       119 ~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~  191 (457)
T 3bz5_A          119 TKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK  191 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT
T ss_pred             CeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCC
Confidence              34677888 899999887665 43  778899999999998777766  4788999999999999998887  78899


Q ss_pred             CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccccccccccccc
Q 014835          161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSEIVKDGWMKQS  221 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~~~~~~~n~  221 (417)
                      +|+.|++++|. ++ .      +  .+..+ .|+.|++++|.++ +|...+..+.......|.
T Consensus       192 ~L~~L~l~~N~-l~-~------~--~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          192 LLNRLNCDTNN-IT-K------L--DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             TCCEEECCSSC-CS-C------C--CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred             CCCEEECcCCc-CC-e------e--ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence            99999999998 55 2      3  36677 9999999999988 775544444433333333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.71  E-value=1.4e-16  Score=167.99  Aligned_cols=161  Identities=18%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             ccEEEeecCCCccc-CccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCC-------CCcCCCCCccccC
Q 014835           11 VYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPI-------FERFTEIPSCNID   81 (417)
Q Consensus        11 L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~-------l~~lp~l~~l~l~   81 (417)
                      |+.|++++|.++.+ |..+..+++|++|+|++|.+.+.+| ..+.++++|++|++++|..       +..+|.+..+.+.
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            44444444444433 2335555555555555555444443 3445555555555555431       1122223323332


Q ss_pred             CC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC----C----cccCCCCCCCEEE
Q 014835           82 GG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL----P----DELGNLEALETLI  143 (417)
Q Consensus        82 g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l----p----~~l~~l~~L~~L~  143 (417)
                      ++         ..+..+++ +.|++++|.+.+..|..+..+++|++|++++|.+.+..    |    ..++.+++|+.|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            22         22334444 45555554444333334444455555555554433221    1    1134445555555


Q ss_pred             eeccCCCCcch-hccCCCCCcEEEccCCC
Q 014835          144 VDRTAMREVPE-SLGQLSSLKILVLSNIK  171 (417)
Q Consensus       144 L~~n~l~~lp~-~l~~L~~L~~L~L~~n~  171 (417)
                      +++|.++.+|. .+..+++|+.|+|++|.
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCC
Confidence            55555544443 24445555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.1e-16  Score=161.51  Aligned_cols=142  Identities=19%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|++|++++|.++.++. +..+++|++|++++|.+.+..|  ++.+++|++|++++|. +..+           ..+..+
T Consensus       178 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-----------~~l~~l  242 (466)
T 1o6v_A          178 TLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDI-----------GTLASL  242 (466)
T ss_dssp             TCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC-----------GGGGGC
T ss_pred             CCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccc-----------hhhhcC
Confidence            45555555555554432 4455555555555544433322  3445555555555542 1111           234455


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|++++|.+.+..|  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..++. +..+++|+.|+|+
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~  317 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLY  317 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECC
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECc
Confidence            55 556666554443322  4555555666665555443322  4555555555555555554443 4555555555555


Q ss_pred             CCC
Q 014835          169 NIK  171 (417)
Q Consensus       169 ~n~  171 (417)
                      +|.
T Consensus       318 ~n~  320 (466)
T 1o6v_A          318 FNN  320 (466)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1e-16  Score=143.95  Aligned_cols=150  Identities=17%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .-+.++.+++.++++|..+  .++|++|+|++|.+.+..+..+.++++|++|++++| .++.+|.         ..+..+
T Consensus         8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~l   75 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPN---------GVFNKL   75 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT---------TTTTTC
T ss_pred             CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccCh---------hhcCCC
Confidence            4567888899999999765  468999999998777655566788999999999995 4445543         345667


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L  167 (417)
                      ++ ++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence            77 7777777766554445566777777777777776665555567777777777777777666653 667777777777


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      ++|.
T Consensus       156 ~~N~  159 (208)
T 2o6s_A          156 HDNP  159 (208)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            7776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=7.9e-17  Score=166.43  Aligned_cols=135  Identities=15%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             CCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCccC
Q 014835           53 FKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMIL  129 (417)
Q Consensus        53 ~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~l  129 (417)
                      ..+++|++|++++|......|          ..+..+++ +.|++++|.+.+  .+|..+..+++|++|++++|.+.+.+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVF----------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT----------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             cCCCCceEEECCCCccccchh----------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            455666666666654433333          34555666 666666665443  23445556666666666666655544


Q ss_pred             Cc-ccCCCCCCCEEEeeccCC-CCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835          130 PD-ELGNLEALETLIVDRTAM-REVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD  205 (417)
Q Consensus       130 p~-~l~~l~~L~~L~L~~n~l-~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp  205 (417)
                      |. .+..+++|+.|++++|.+ +.+|..+.  ++|+.|+|++|. ++ .      +|..+..+ .|+.|++++|.++ +|
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~-~------ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IM-S------IPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CC-C------CCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-Cc-c------cChhhcCCCCCCEEECCCCCCCCCC
Confidence            43 355566666666666666 33333222  466666666665 33 3      56555555 6666666666665 55


Q ss_pred             cC
Q 014835          206 PN  207 (417)
Q Consensus       206 ~~  207 (417)
                      +.
T Consensus       490 ~~  491 (562)
T 3a79_B          490 DG  491 (562)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.70  E-value=2.4e-17  Score=170.01  Aligned_cols=179  Identities=18%  Similarity=0.134  Sum_probs=105.5

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccc--cccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESI--SSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~l--p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      +|+.|++++|.+...... ..+++|++|++++|.+.+..  |..+.++++|++|++++|. +..+|          ..+.
T Consensus       326 ~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~----------~~~~  393 (570)
T 2z63_A          326 SLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS----------SNFL  393 (570)
T ss_dssp             SCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEE----------EEEE
T ss_pred             ccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccc----------cccc
Confidence            788888888877643332 67788888888887665443  5667778888888888863 22222          2244


Q ss_pred             cccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC--CcchhccCCCCCc
Q 014835           88 RLAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR--EVPESLGQLSSLK  163 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~  163 (417)
                      .+++ +.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.  .+|..+..+++|+
T Consensus       394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            5555 556665555444333 34455556666666666555555555555666666666665553  3555555556666


Q ss_pred             EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      .|+|++|. +++.      .|..+..+ .|+.|++++|.++ +|+.
T Consensus       474 ~L~l~~n~-l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          474 FLDLSQCQ-LEQL------SPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             EEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             EEECCCCc-cccC------ChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            66666555 3323      34455555 5666666666555 4443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=1.7e-16  Score=171.73  Aligned_cols=83  Identities=19%  Similarity=0.220  Sum_probs=44.6

Q ss_pred             CCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-C
Q 014835          114 SLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-I  191 (417)
Q Consensus       114 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~  191 (417)
                      +|+.|++++|.+.+..|..++.+++|+.|+|++|.+..+ |..+..+++|++|+|++|. +.+.      .|..+..+ .
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~~~~l~~  339 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGEL------YSSNFYGLPK  339 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCC------CSCSCSSCTT
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCcc------CHHHhcCCCC
Confidence            444455555444444455555566666666666666443 3455566666666666665 3322      34444445 5


Q ss_pred             cceeecCCCccc
Q 014835          192 PEYLRRSPRKLT  203 (417)
Q Consensus       192 L~~L~l~~n~L~  203 (417)
                      |+.|++++|.++
T Consensus       340 L~~L~L~~N~i~  351 (844)
T 3j0a_A          340 VAYIDLQKNHIA  351 (844)
T ss_dssp             CCEEECCSCCCC
T ss_pred             CCEEECCCCCCC
Confidence            555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.70  E-value=2.8e-16  Score=151.99  Aligned_cols=185  Identities=17%  Similarity=0.242  Sum_probs=146.2

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-----CCcCCCC
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-----FERFTEI   75 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-----l~~lp~l   75 (417)
                      .+|.+... +|++|++++|.++.+|. +..+++|++|++++|.+. .+| .+.++++|++|++++|..     +..++.+
T Consensus        58 ~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L  134 (347)
T 4fmz_A           58 SIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISPLANLTKM  134 (347)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTC
T ss_pred             cchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccCchhhccCCce
Confidence            46666666 99999999999999988 999999999999998655 455 488999999999999753     2234455


Q ss_pred             CccccCCC------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccC
Q 014835           76 PSCNIDGG------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTA  148 (417)
Q Consensus        76 ~~l~l~g~------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~  148 (417)
                      ..++++++      ..+..+++ +.|++++|.+....+  +..+++|++|++++|.+.+. +. +..+++|+.|++++|.
T Consensus       135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC
T ss_pred             eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCC
Confidence            55777766      45777888 999999987655433  77899999999999986543 33 7788899999999998


Q ss_pred             CCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          149 MREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       149 l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +..++. +..+++|+.|++++|. ++ .      ++. +..+ .|+.|++++|.++
T Consensus       211 l~~~~~-~~~~~~L~~L~l~~n~-l~-~------~~~-~~~l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          211 ITDITP-VANMTRLNSLKIGNNK-IT-D------LSP-LANLSQLTWLEIGTNQIS  256 (347)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSSC-CC-C------CGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCch-hhcCCcCCEEEccCCc-cC-C------Ccc-hhcCCCCCEEECCCCccC
Confidence            877765 7888899999999988 44 2      443 6666 8888999888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.2e-16  Score=144.29  Aligned_cols=151  Identities=16%  Similarity=0.152  Sum_probs=104.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      ..+.++.+++.++.+|..+.  ++|++|+|++|.+.+..|..+.++++|++|+|++|. ++.+|.               
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~---------------   81 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPV---------------   81 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---------------
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcCh---------------
Confidence            56789999999999998665  899999999998888888889999999999999963 343332               


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccC
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN  169 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~  169 (417)
                                       ..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++
T Consensus        82 -----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           82 -----------------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ  144 (229)
T ss_dssp             -----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS
T ss_pred             -----------------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC
Confidence                             234456666666666666555444455666666666666666666666666666666666666


Q ss_pred             CCCChhhhhcccCCCC-ccccC-CcceeecCCCccc
Q 014835          170 IKRLPEYLQLHLQLPE-NGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       170 n~~l~~~l~~~l~lp~-~l~~l-~L~~L~l~~n~L~  203 (417)
                      |. ++ .      +|. .+..+ .|+.|++++|++.
T Consensus       145 N~-l~-~------~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          145 NQ-LK-S------IPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SC-CC-C------CCTTTTTTCTTCCEEECTTSCBC
T ss_pred             Cc-CC-c------cCHHHHhCCCCCCEEEeeCCCcc
Confidence            65 33 1      332 34445 6666666666644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=4e-16  Score=143.13  Aligned_cols=179  Identities=17%  Similarity=0.233  Sum_probs=146.7

Q ss_pred             cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835           12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS   91 (417)
Q Consensus        12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~   91 (417)
                      +.+++....++++|. +.  .+|++|+|++|.+.+..+..+.++++|++|++++|..++.++.         ..+..+++
T Consensus        14 ~~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---------~~f~~l~~   81 (239)
T 2xwt_C           14 EDFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES---------HSFYNLSK   81 (239)
T ss_dssp             STTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT---------TTEESCTT
T ss_pred             CcceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH---------hHcCCCcC
Confidence            334444555889998 54  4899999999887766666799999999999999766777774         57888999


Q ss_pred             -ceEEcCC-CCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCC---EEEeecc-CCCCcch-hccCCCCCc-
Q 014835           92 -CRLVLED-CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALE---TLIVDRT-AMREVPE-SLGQLSSLK-  163 (417)
Q Consensus        92 -~~L~L~~-n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~---~L~L~~n-~l~~lp~-~l~~L~~L~-  163 (417)
                       +.|++++ |.+....+..+..+++|++|++++|.+.+ +|. ++.+++|+   .|++++| .++.+|. .+..+++|+ 
T Consensus        82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~  159 (239)
T 2xwt_C           82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL  159 (239)
T ss_dssp             CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred             CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence             9999998 66655555678899999999999999766 776 88899998   9999999 9988875 588999999 


Q ss_pred             EEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc-cc-cCcCccccc
Q 014835          164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK-LT-LDPNELSEI  212 (417)
Q Consensus       164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~-L~-lp~~~L~~l  212 (417)
                      .|++++|. ++ .      +|...... .|+.|++++|+ ++ +|+..+..+
T Consensus       160 ~L~l~~n~-l~-~------i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          160 TLKLYNNG-FT-S------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             EEECCSCC-CC-E------ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             EEEcCCCC-Cc-c------cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence            99999998 55 4      77777777 99999999995 88 877655544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=2.6e-16  Score=142.84  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .-+.+++++++++++|..+.  ++|+.|+|++|.+.+..+..+..+++|++|+|++|..-...|          ..+..+
T Consensus        12 ~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----------~~~~~l   79 (220)
T 2v9t_B           12 SNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----------DAFQGL   79 (220)
T ss_dssp             ETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT----------TTTTTC
T ss_pred             CCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH----------HHhhCC
Confidence            45788999999999998765  789999999987776666678899999999999964322222          344555


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L  167 (417)
                      ++ +.|+|++|.+....+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.++.++. .+..+++|+.|+|
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            55 555555554443222334455555555555555555555555555555555555555544443 3455555555555


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      ++|+
T Consensus       160 ~~N~  163 (220)
T 2v9t_B          160 AQNP  163 (220)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            5554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=3.7e-16  Score=157.73  Aligned_cols=161  Identities=18%  Similarity=0.306  Sum_probs=78.9

Q ss_pred             CCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC-----CCcCCCCC
Q 014835            3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI-----FERFTEIP   76 (417)
Q Consensus         3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~-----l~~lp~l~   76 (417)
                      +|.+... +|++|+|++|.++.+|+ ++.+++|++|++++|.+.+.. . +.++++|++|++++|..     +..++.+.
T Consensus        61 l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~  137 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-P-LANLTNLTGLTLFNNQITDIDPLKNLTNLN  137 (466)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred             CcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh-h-hcCCCCCCEEECCCCCCCCChHHcCCCCCC
Confidence            4554444 67777777776666665 666666666666665444332 2 55555666666555421     11112222


Q ss_pred             ccccCCC--------------------------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC
Q 014835           77 SCNIDGG--------------------------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL  129 (417)
Q Consensus        77 ~l~l~g~--------------------------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l  129 (417)
                      .++++++                          ..+..+++ +.|++++|.+.. ++ .+..+++|++|++++|.+.+..
T Consensus       138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~  215 (466)
T 1o6v_A          138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDIT  215 (466)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred             EEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCcccccc
Confidence            2222211                          22444555 566666654332 22 2445555666665555544433


Q ss_pred             CcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835          130 PDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       130 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      |  ++.+++|+.|++++|.+..++ .+..+++|+.|++++|.
T Consensus       216 ~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          216 P--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred             c--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc
Confidence            2  334445555555555444442 23444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.1e-16  Score=156.31  Aligned_cols=174  Identities=17%  Similarity=0.145  Sum_probs=142.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCC-CCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIF-KLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~-~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      .-+.+++++++++.+|..+.  ..|+.|+|++|.+.+..+..+. ++++|++|+|++| .+..++.         ..+..
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~---------~~~~~   86 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS---------EAFVP   86 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECT---------TTTTT
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccCh---------hhccC
Confidence            45789999999999998664  4689999999877766666666 8999999999995 4555543         46888


Q ss_pred             ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhc----cCCCCCc
Q 014835           89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESL----GQLSSLK  163 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l----~~L~~L~  163 (417)
                      +++ +.|+|++|.+....+..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|.+..+|..+    ..+++|+
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence            899 99999999877666667889999999999999998888889999999999999999999998765    5799999


Q ss_pred             EEEccCCCCChhhhhcccCCCC-ccccC-C--cceeecCCCccc
Q 014835          164 ILVLSNIKRLPEYLQLHLQLPE-NGLEG-I--PEYLRRSPRKLT  203 (417)
Q Consensus       164 ~L~L~~n~~l~~~l~~~l~lp~-~l~~l-~--L~~L~l~~n~L~  203 (417)
                      .|+|++|. ++ .      +|. .+..+ .  ++.|++++|++.
T Consensus       167 ~L~L~~N~-l~-~------l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          167 LLDLSSNK-LK-K------LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             EEECCSSC-CC-C------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             EEECCCCC-CC-c------cCHHHhhhccHhhcceEEecCCCcc
Confidence            99999998 55 2      553 33444 3  588999999876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2.6e-16  Score=142.92  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=102.8

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      .-+.+++++|.++++|..+.  ..+++|+|++|.+.+..| ..+.++++|++|+|++|. ++.++.         ..+..
T Consensus        12 ~~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~---------~~~~~   79 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE---------GAFEG   79 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECT---------TTTTT
T ss_pred             CCCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECH---------HHhCC
Confidence            55789999999999998764  467899999987766544 347889999999999953 444432         34556


Q ss_pred             ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEE
Q 014835           89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILV  166 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~  166 (417)
                      +++ +.|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            666 6666666665555555566666666666666666665566666666666666666666544 45566666666666


Q ss_pred             ccCCC
Q 014835          167 LSNIK  171 (417)
Q Consensus       167 L~~n~  171 (417)
                      |++|+
T Consensus       160 L~~N~  164 (220)
T 2v70_A          160 LLANP  164 (220)
T ss_dssp             CCSCC
T ss_pred             ecCcC
Confidence            66665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.3e-16  Score=143.18  Aligned_cols=166  Identities=15%  Similarity=0.162  Sum_probs=135.3

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.....+|++|+|++|.++.+|.. ++.+++|++|+|++|.+.+..+..+..+++|++|+|++| .++.+|.      
T Consensus        21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------   93 (208)
T 2o6s_A           21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN------   93 (208)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred             CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCH------
Confidence            45544433899999999999988875 789999999999998777655566789999999999996 4555553      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..+..+++ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.      +.+
T Consensus        94 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~  164 (208)
T 2o6s_A           94 ---GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTC  164 (208)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCT
T ss_pred             ---hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCC
Confidence               45788999 99999999877666666889999999999999988766667899999999999999763      345


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCccccC
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG  190 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l  190 (417)
                      ++|+.|+++.|. +++.      +|..+..+
T Consensus       165 ~~l~~L~~~~n~-~~g~------ip~~~~~l  188 (208)
T 2o6s_A          165 PGIRYLSEWINK-HSGV------VRNSAGSV  188 (208)
T ss_dssp             TTTHHHHHHHHH-CTTT------BBCTTSSB
T ss_pred             CCHHHHHHHHHh-CCce------eeccCccc
Confidence            689999999888 6656      77766555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.69  E-value=8.2e-17  Score=167.62  Aligned_cols=182  Identities=17%  Similarity=0.171  Sum_probs=114.4

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.-+..++++|+|++|.|+.+|+ +|..+++|++|+|++|.+.+..|.+|.++++|++|+|++| .++.+|.      
T Consensus        45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~------  117 (635)
T 4g8a_A           45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL------  117 (635)
T ss_dssp             SCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG------
T ss_pred             ccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH------
Confidence            4555443467778888777777765 4777777888888777665555556777777888888774 3555553      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccCCCCcc-hhcc
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTAMREVP-ESLG  157 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~  157 (417)
                         ..+.++++ ++|+|++|.+.+..+..++.+++|++|++++|.+.. .+|..++.+++|++|++++|.+..++ ..+.
T Consensus       118 ---~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          118 ---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             ---GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             ---HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence               45667777 777777776655444557777777777777777654 35666677777777777777775543 3443


Q ss_pred             CCCC----CcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835          158 QLSS----LKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       158 ~L~~----L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~  201 (417)
                      .+.+    +..++++.|. +. .      ++...... .+..+++.+|.
T Consensus       195 ~L~~l~~~~~~~~ls~n~-l~-~------i~~~~~~~~~~~~l~l~~n~  235 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNP-MN-F------IQPGAFKEIRLHKLTLRNNF  235 (635)
T ss_dssp             HHHTCTTCCCEEECTTCC-CC-E------ECTTTTTTCEEEEEEEESCC
T ss_pred             chhhhhhhhhhhhcccCc-cc-c------cCcccccchhhhhhhhhccc
Confidence            3333    2356666665 33 1      33333333 44555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.68  E-value=2.1e-16  Score=161.45  Aligned_cols=190  Identities=12%  Similarity=0.091  Sum_probs=120.3

Q ss_pred             cccC-cccEEEeecCCCcc-----cCccccCCcCcceeeccccccCccccccC-----CCCCCCcEEeeecCCCCCcCCC
Q 014835            6 VTSC-HVYTLELVKVGIKE-----LPSSIECLSNLKKLYIVDCSMLESISSSI-----FKLKSLQSIEISNCPIFERFTE   74 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l-----~~L~~L~~L~Ls~c~~l~~lp~   74 (417)
                      +... +|+.|+++++.++.     ++..+ .+++|++|++++|.+.+.+|..+     +++++|+.+++++|..  .+|.
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~  292 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ  292 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred             hccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence            3344 67777777766551     22111 23577777777777666677666     6677777777776544  4441


Q ss_pred             -----------CCccccCCC-----cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc--cCCcccCC
Q 014835           75 -----------IPSCNIDGG-----IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM--ILPDELGN  135 (417)
Q Consensus        75 -----------l~~l~l~g~-----~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~--~lp~~l~~  135 (417)
                                 +..+.++++     .....+++ +.|++++|.+.+.+|..+..+++|++|++++|.+.+  .+|..++.
T Consensus       293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  372 (520)
T 2z7x_B          293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ  372 (520)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred             hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence                       333444444     11256667 778888887777777777777888888888877665  55666777


Q ss_pred             CCCCCEEEeeccCCCC-cchh-ccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCccc-cCc
Q 014835          136 LEALETLIVDRTAMRE-VPES-LGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       136 l~~L~~L~L~~n~l~~-lp~~-l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~L~-lp~  206 (417)
                      +++|++|++++|.+.. +|.. +..+++|+.|++++|. +++.      +|..+. -.|+.|++++|.++ +|.
T Consensus       373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~------~~~~l~-~~L~~L~Ls~N~l~~ip~  438 (520)
T 2z7x_B          373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDT------IFRCLP-PRIKVLDLHSNKIKSIPK  438 (520)
T ss_dssp             CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGG------GGGSCC-TTCCEEECCSSCCCCCCG
T ss_pred             CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcc------hhhhhc-ccCCEEECCCCcccccch
Confidence            7888888888887755 7653 6667777777777777 4333      332221 25666666666665 554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1.9e-16  Score=164.72  Aligned_cols=169  Identities=20%  Similarity=0.220  Sum_probs=140.0

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|+.|+|++|.+..+|. +..+++|+.|+|++|.+.+. |. +..+++|+.|+|++|. +..+|           .+..+
T Consensus        44 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~-l~~l~-----------~l~~l  108 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENK-IKDLS-----------SLKDL  108 (605)
T ss_dssp             TCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC-CCCCT-----------TSTTC
T ss_pred             CCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCC-CCCCh-----------hhccC
Confidence            89999999999999884 89999999999999876654 44 8899999999999963 44443           56778


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|+|++|.+.. + ..+..+++|+.|+|++|.+.+.  ..++.+++|+.|+|++|.+..++. +..+++|+.|+|+
T Consensus       109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS  183 (605)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECc
Confidence            88 999999997665 4 4578899999999999987664  568899999999999999987766 8999999999999


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      +|. +. .      +| .+..+ .|+.|++++|.+. .|..
T Consensus       184 ~N~-i~-~------l~-~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          184 KNH-IS-D------LR-ALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             SSC-CC-B------CG-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred             CCC-CC-C------Ch-HHccCCCCCEEEccCCcCcCCccc
Confidence            998 55 2      54 57777 9999999999977 5544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=8.4e-16  Score=158.39  Aligned_cols=168  Identities=19%  Similarity=0.254  Sum_probs=90.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC----CccccCCC--
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI----PSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l----~~l~l~g~--   83 (417)
                      +|+.|+|++|.|+.+|..+.  ++|++|+|++|.+. .+|   ..+++|++|+|++| .++.+|.+    ..|+++++  
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~ip~l~~~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLSTLPELPASLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCCcchhhcCCCEEECCCCcC
Confidence            68888888888888887663  78888888887655 677   35788888888885 44446631    11222222  


Q ss_pred             cccc-cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCC
Q 014835           84 IGIE-RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSS  161 (417)
Q Consensus        84 ~~l~-~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~  161 (417)
                      ..+. .+++ +.|+|++|.+.+ +|.   .+++|++|+|++|.+.+ +|. +.  ++|+.|+|++|.|+.+|. +..  +
T Consensus       133 ~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~  201 (571)
T 3cvr_A          133 TMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--R  201 (571)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----
T ss_pred             CCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--h
Confidence            0000 2334 555555554332 343   34455555555554333 443 33  455555555555555544 332  3


Q ss_pred             C-------cEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          162 L-------KILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       162 L-------~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      |       +.|+|++|. ++ .      +|..+..+ .|+.|++++|+|+
T Consensus       202 L~~~~~~L~~L~Ls~N~-l~-~------lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          202 NHHSEETEIFFRCRENR-IT-H------IPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             ------CCEEEECCSSC-CC-C------CCGGGGGSCTTEEEECCSSSCC
T ss_pred             hhcccccceEEecCCCc-ce-e------cCHHHhcCCCCCEEEeeCCcCC
Confidence            4       555555554 32 2      45444445 5555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=2.3e-16  Score=140.58  Aligned_cols=152  Identities=14%  Similarity=0.112  Sum_probs=129.0

Q ss_pred             ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCc
Q 014835           28 IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLP  106 (417)
Q Consensus        28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp  106 (417)
                      .+.+++|++|++++|.+. .+| .+..+++|++|++++| .+..+           ..+..+++ +.|++++|.+....|
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~  105 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-----------NPISGLSNLERLRIMGKDVTSDKI  105 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-----------GGGTTCTTCCEEEEECTTCBGGGS
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-----------hhhhcCCCCCEEEeECCccCcccC
Confidence            467889999999997655 677 5889999999999997 44433           36778889 999999998887788


Q ss_pred             ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccC-CCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCC
Q 014835          107 SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTA-MREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE  185 (417)
Q Consensus       107 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~  185 (417)
                      ..+..+++|++|++++|.+.+..|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|. ++ .      ++ 
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~-~------~~-  175 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VH-D------YR-  175 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CC-C------CT-
T ss_pred             hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-Cc-C------hH-
Confidence            889999999999999999988888889999999999999998 88887 68999999999999998 55 2      55 


Q ss_pred             ccccC-CcceeecCCCccc
Q 014835          186 NGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       186 ~l~~l-~L~~L~l~~n~L~  203 (417)
                      .+..+ .|+.|++++|++.
T Consensus       176 ~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TGGGCSSCCEEEECBC---
T ss_pred             HhccCCCCCEEEeeCcccC
Confidence            67778 9999999999853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=4.7e-16  Score=148.50  Aligned_cols=174  Identities=17%  Similarity=0.144  Sum_probs=140.3

Q ss_pred             cccEEEeecCCCcc-cC----ccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCc--CCCCCccccCC
Q 014835           10 HVYTLELVKVGIKE-LP----SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER--FTEIPSCNIDG   82 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~-lp----~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~--lp~l~~l~l~g   82 (417)
                      +|++|+|++|.++. .|    ..+..+++|++|+|++|.+.+..|..++.+++|++|+|++|...+.  ++.        
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------  189 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA--------  189 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT--------
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH--------
Confidence            99999999999984 33    2356799999999999998887788899999999999999864331  111        


Q ss_pred             Ccccccccc-ceEEcCCCCCCCCCcc----cccCCCCCcEEecccccCCccCCcccCCC---CCCCEEEeeccCCCCcch
Q 014835           83 GIGIERLAS-CRLVLEDCSSLQSLPS----SLCMFKSLTSLEIIDCQYFMILPDELGNL---EALETLIVDRTAMREVPE  154 (417)
Q Consensus        83 ~~~l~~l~~-~~L~L~~n~~l~~lp~----~l~~l~~L~~L~L~~n~~~~~lp~~l~~l---~~L~~L~L~~n~l~~lp~  154 (417)
                      ...+..+++ ++|+|++|.+. .+|.    .+..+++|++|+|++|.+.+..|..++.+   ++|++|++++|.++.+|.
T Consensus       190 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~  268 (310)
T 4glp_A          190 ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK  268 (310)
T ss_dssp             TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred             HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence            023457788 99999999764 3343    24678999999999999888888777776   699999999999999998


Q ss_pred             hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          155 SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       155 ~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      .+.  ++|+.|+|++|+ ++ .      +|. +..+ .|+.|++++|+++
T Consensus       269 ~~~--~~L~~L~Ls~N~-l~-~------~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          269 GLP--AKLRVLDLSSNR-LN-R------APQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCC--SCCSCEECCSCC-CC-S------CCC-TTSCCCCSCEECSSTTTS
T ss_pred             hhc--CCCCEEECCCCc-CC-C------Cch-hhhCCCccEEECcCCCCC
Confidence            774  899999999999 55 2      553 5666 9999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.66  E-value=3.5e-16  Score=160.73  Aligned_cols=171  Identities=18%  Similarity=0.127  Sum_probs=140.1

Q ss_pred             cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835           12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS   91 (417)
Q Consensus        12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~   91 (417)
                      ...+.+++.++++|..+.  ++|++|+|++|.+.+..|..+.++++|++|++++|.. ..++.         ..+..+++
T Consensus         8 ~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~---------~~~~~l~~   75 (549)
T 2z81_A            8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEG---------DAFYSLGS   75 (549)
T ss_dssp             SEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECT---------TTTTTCTT
T ss_pred             ceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccCh---------hhcccccc
Confidence            347888899999999765  7999999999988777788899999999999999754 44432         57889999


Q ss_pred             -ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCc-cCCcccCCCCCCCEEEeeccC-CCCcc-hhccCCCCCcEEEc
Q 014835           92 -CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM-ILPDELGNLEALETLIVDRTA-MREVP-ESLGQLSSLKILVL  167 (417)
Q Consensus        92 -~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~n~-l~~lp-~~l~~L~~L~~L~L  167 (417)
                       ++|++++|.+.+..|..++.+++|++|++++|.+.+ ..|..++++++|++|++++|. ++.+| ..+..+++|++|++
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence             999999998887777789999999999999999876 467789999999999999998 57787 57999999999999


Q ss_pred             cCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835          168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~  201 (417)
                      ++|. +++.      +|..+..+ .|+.|+++.|.
T Consensus       156 ~~n~-l~~~------~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          156 KALS-LRNY------QSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             EETT-CCEE------CTTTTTTCSEEEEEEEECSB
T ss_pred             cCCc-cccc------ChhhhhccccCceEecccCc
Confidence            9998 5544      55555444 44444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=1.2e-15  Score=138.58  Aligned_cols=139  Identities=17%  Similarity=0.196  Sum_probs=122.6

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.....+|+.|+|++|.|+.+|. .+..+++|++|+|++|.+.+..|..+.++++|++|+|++| .++.+|.      
T Consensus        25 ~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------   97 (220)
T 2v9t_B           25 EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPK------   97 (220)
T ss_dssp             SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCT------
T ss_pred             cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCH------
Confidence            4666444589999999999998887 5899999999999999888877899999999999999995 5666664      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR  150 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~  150 (417)
                         ..+..+++ +.|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        98 ---~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           98 ---SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ---hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence               45788999 99999999988888889999999999999999988887788999999999999999873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=5.1e-16  Score=151.57  Aligned_cols=160  Identities=18%  Similarity=0.180  Sum_probs=133.2

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-cc-CCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IE-CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~-~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      .+|..+...++.|+|++|.|+.++.. +. .+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..++.     
T Consensus        32 ~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----  105 (361)
T 2xot_A           32 NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE-----  105 (361)
T ss_dssp             SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT-----
T ss_pred             ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCH-----
Confidence            46665444899999999999988876 55 89999999999988777667789999999999999964 565553     


Q ss_pred             cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCccc---CCCCCCCEEEeeccCCCCcch-
Q 014835           80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDEL---GNLEALETLIVDRTAMREVPE-  154 (417)
Q Consensus        80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l---~~l~~L~~L~L~~n~l~~lp~-  154 (417)
                          ..+..+++ +.|+|++|.+....|..+..+++|+.|+|++|.+....+..+   ..+++|+.|+|++|.+..+|. 
T Consensus       106 ----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          106 ----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             ----TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             ----HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence                56788999 999999999888778899999999999999999766433444   679999999999999998884 


Q ss_pred             hccCCCC--CcEEEccCCC
Q 014835          155 SLGQLSS--LKILVLSNIK  171 (417)
Q Consensus       155 ~l~~L~~--L~~L~L~~n~  171 (417)
                      .+..++.  |+.|+|++|+
T Consensus       182 ~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSC
T ss_pred             HhhhccHhhcceEEecCCC
Confidence            6677776  4889999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.65  E-value=3.2e-17  Score=157.91  Aligned_cols=175  Identities=17%  Similarity=0.141  Sum_probs=90.7

Q ss_pred             cccEEEeecCCCc-c-cCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCc--CCCCCccccCCCcc
Q 014835           10 HVYTLELVKVGIK-E-LPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER--FTEIPSCNIDGGIG   85 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~-lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~--lp~l~~l~l~g~~~   85 (417)
                      +|++|+|++|.++ . +|..+..+++|++|+|++|.+.+..|..+.++++|++|++++|..++.  ++          ..
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~----------~~  163 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ----------TL  163 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH----------HH
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH----------HH
Confidence            4444444444443 1 343344444444444444443333444444444444444444422221  11          23


Q ss_pred             cccccc-ceEEcCCC-CCCCC-CcccccCCC-CCcEEecccc--cCC-ccCCcccCCCCCCCEEEeeccC-C-CCcchhc
Q 014835           86 IERLAS-CRLVLEDC-SSLQS-LPSSLCMFK-SLTSLEIIDC--QYF-MILPDELGNLEALETLIVDRTA-M-REVPESL  156 (417)
Q Consensus        86 l~~l~~-~~L~L~~n-~~l~~-lp~~l~~l~-~L~~L~L~~n--~~~-~~lp~~l~~l~~L~~L~L~~n~-l-~~lp~~l  156 (417)
                      +..+++ +.|++++| .+... ++..+..++ +|++|++++|  .+. +.+|..+..+++|+.|++++|. + ...+..+
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence            445666 67777766 44332 455566666 7777777776  333 3455555666677777777776 4 3445566


Q ss_pred             cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCC
Q 014835          157 GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPR  200 (417)
Q Consensus       157 ~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n  200 (417)
                      ..+++|++|++++|..+.+.      ....+..+ .|+.|++++|
T Consensus       244 ~~l~~L~~L~l~~~~~~~~~------~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          244 FQLNYLQHLSLSRCYDIIPE------TLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGCTTCCEEECTTCTTCCGG------GGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCCEeeCCCCCCCCHH------HHHHHhcCCCCCEEeccCc
Confidence            66677777777766423211      11134445 6777777766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=2.5e-16  Score=158.53  Aligned_cols=184  Identities=18%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             CCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCC-------------cEEeeecCCCC
Q 014835            4 PSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSL-------------QSIEISNCPIF   69 (417)
Q Consensus         4 P~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L-------------~~L~Ls~c~~l   69 (417)
                      |+.+.. +|++|++++|.++++|.+++++++|++|++++|.+.+.+|.+++++++|             ++|++++|. +
T Consensus         5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l   83 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-L   83 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-C
T ss_pred             ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-c
Confidence            555556 9999999999999999999999999999999999988999988887764             777777753 4


Q ss_pred             CcCCC----CCccccCCC----------------------cccccc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecc
Q 014835           70 ERFTE----IPSCNIDGG----------------------IGIERL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEII  121 (417)
Q Consensus        70 ~~lp~----l~~l~l~g~----------------------~~l~~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~  121 (417)
                      +.+|.    +..++++++                      ..+..+ ++ ++|++++|.+.+ +| .++.+++|++|+++
T Consensus        84 ~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           84 SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             SCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             ccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence            44443    222334333                      112222 23 555555554432 44 35555555555555


Q ss_pred             cccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccCCcceeecCCCc
Q 014835          122 DCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEGIPEYLRRSPRK  201 (417)
Q Consensus       122 ~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l~L~~L~l~~n~  201 (417)
                      +|.+.+ +|..   ..+|++|++++|.+..+| .++.+++|+.|++++|. ++ .      +|...  ..|+.|++++|.
T Consensus       162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~-~------l~~~~--~~L~~L~l~~n~  226 (454)
T 1jl5_A          162 NNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LK-K------LPDLP--LSLESIVAGNNI  226 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CS-S------CCCCC--TTCCEEECCSSC
T ss_pred             CCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CC-c------CCCCc--CcccEEECcCCc
Confidence            555433 3432   235555555555555555 35556666666666655 32 1      33211  156666666666


Q ss_pred             cc-cC
Q 014835          202 LT-LD  205 (417)
Q Consensus       202 L~-lp  205 (417)
                      ++ +|
T Consensus       227 l~~lp  231 (454)
T 1jl5_A          227 LEELP  231 (454)
T ss_dssp             CSSCC
T ss_pred             CCccc
Confidence            55 44

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=1.3e-15  Score=158.59  Aligned_cols=177  Identities=19%  Similarity=0.247  Sum_probs=142.4

Q ss_pred             cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835           12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS   91 (417)
Q Consensus        12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~   91 (417)
                      ...+=++.++++||..+.  +++++|+|++|++.+..|.+|.++++|++|+|++| .++.+|.         .++.++++
T Consensus        34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~---------~~f~~L~~  101 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED---------GAYQSLSH  101 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECT---------TTTTTCTT
T ss_pred             CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcCh---------hHhcCCCC
Confidence            345556678899998664  58999999998776666678999999999999996 5566654         57889999


Q ss_pred             -ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC--CcchhccCCCCCcEEEcc
Q 014835           92 -CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR--EVPESLGQLSSLKILVLS  168 (417)
Q Consensus        92 -~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~  168 (417)
                       ++|+|++|++.+.-+..|.++++|++|++++|++.+..+..++++++|++|++++|.+.  .+|..++.+++|++|+|+
T Consensus       102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence             99999999876655567899999999999999988776777999999999999999995  467888999999999999


Q ss_pred             CCCCChhhhhcccCCCCccccC-----CcceeecCCCccc-cCcC
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-----IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-----~L~~L~l~~n~L~-lp~~  207 (417)
                      +|+ +++.      .|..+..+     ....++++.|.++ +++.
T Consensus       182 ~N~-l~~~------~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~  219 (635)
T 4g8a_A          182 SNK-IQSI------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  219 (635)
T ss_dssp             SSC-CCEE------CGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             Ccc-cccc------ccccccchhhhhhhhhhhhcccCcccccCcc
Confidence            998 5533      34444333     3446788888877 5554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=1.6e-15  Score=143.64  Aligned_cols=150  Identities=22%  Similarity=0.318  Sum_probs=129.1

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.+... +|++|+|++|.++.++. +..+++|++|+|++|.+.+ +|. +..+++|++|++++|. +..+        
T Consensus        60 ~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~n~-i~~~--------  127 (291)
T 1h6t_A           60 SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNG-ISDI--------  127 (291)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECTTSC-CCCC--------
T ss_pred             cChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECCCCc-CCCC--------
Confidence            45666566 99999999999999888 9999999999999986554 555 8899999999999963 4433        


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..+..+++ +.|++++|.+...  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.++.+|. +..+
T Consensus       128 ---~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l  199 (291)
T 1h6t_A          128 ---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGL  199 (291)
T ss_dssp             ---GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTC
T ss_pred             ---hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccC
Confidence               35778899 9999999977654  578899999999999999776544  8999999999999999999875 8999


Q ss_pred             CCCcEEEccCCC
Q 014835          160 SSLKILVLSNIK  171 (417)
Q Consensus       160 ~~L~~L~L~~n~  171 (417)
                      ++|+.|++++|+
T Consensus       200 ~~L~~L~l~~n~  211 (291)
T 1h6t_A          200 KNLDVLELFSQE  211 (291)
T ss_dssp             TTCSEEEEEEEE
T ss_pred             CCCCEEECcCCc
Confidence            999999999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.63  E-value=3.5e-15  Score=155.49  Aligned_cols=181  Identities=24%  Similarity=0.281  Sum_probs=94.6

Q ss_pred             CCCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC----CCCc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----EIPS   77 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----~l~~   77 (417)
                      .+|..+..+|++|+|++|.|+.+|.   .+++|++|+|++|.+ +.+|.   .+++|++|+|++|. +..+|    .+..
T Consensus        54 ~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~l~~~l~~L~~  125 (622)
T 3g06_A           54 TLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNP-LTHLPALPSGLCK  125 (622)
T ss_dssp             CCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CCCCCCCCTTCCE
T ss_pred             ccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCc-CCCCCCCCCCcCE
Confidence            3454333467777777777777776   456777777777653 34554   45666666666642 22222    1222


Q ss_pred             cccCCC--cccc-cccc-ceEEcCCCCCCCCCcc---ccc--------------CCCCCcEEecccccCCccCCcccC--
Q 014835           78 CNIDGG--IGIE-RLAS-CRLVLEDCSSLQSLPS---SLC--------------MFKSLTSLEIIDCQYFMILPDELG--  134 (417)
Q Consensus        78 l~l~g~--~~l~-~l~~-~~L~L~~n~~l~~lp~---~l~--------------~l~~L~~L~L~~n~~~~~lp~~l~--  134 (417)
                      |+++++  ..+. .+++ +.|++++|.+.+ +|.   .+.              .+++|+.|++++|.+.+ +|..+.  
T Consensus       126 L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L  203 (622)
T 3g06_A          126 LWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL  203 (622)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred             EECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence            333333  0111 1133 444444443322 111   111              12555556665555433 222111  


Q ss_pred             ---------------CCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecC
Q 014835          135 ---------------NLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRS  198 (417)
Q Consensus       135 ---------------~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~  198 (417)
                                     .+++|+.|++++|.++.+|   ..+++|+.|+|++|. ++ .      +|.   .. +|+.|+++
T Consensus       204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~-~------lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LT-S------LPM---LPSGLLSLSVY  269 (622)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CS-C------CCC---CCTTCCEEECC
T ss_pred             hEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CC-c------CCc---ccccCcEEeCC
Confidence                           1256677777777776666   345677777777776 44 2      554   34 67777777


Q ss_pred             CCccc-cCc
Q 014835          199 PRKLT-LDP  206 (417)
Q Consensus       199 ~n~L~-lp~  206 (417)
                      +|.|+ +|.
T Consensus       270 ~N~L~~lp~  278 (622)
T 3g06_A          270 RNQLTRLPE  278 (622)
T ss_dssp             SSCCCSCCG
T ss_pred             CCCCCcCCH
Confidence            77766 654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=6.7e-18  Score=174.43  Aligned_cols=182  Identities=18%  Similarity=0.168  Sum_probs=144.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccc-------------cCccccccCCCCCCCcEEe-eecCCCCCcCCCC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCS-------------MLESISSSIFKLKSLQSIE-ISNCPIFERFTEI   75 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~-------------~~~~lp~~l~~L~~L~~L~-Ls~c~~l~~lp~l   75 (417)
                      +|+.|+|++|.|+.||.+|+++++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.+ .+..++  
T Consensus       350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~--  426 (567)
T 1dce_A          350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLR--  426 (567)
T ss_dssp             TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHH--
T ss_pred             cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhh--
Confidence            8899999999999999999999999999997654             4566677788888888888 4542 221111  


Q ss_pred             CccccCCCccccccc--c-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc
Q 014835           76 PSCNIDGGIGIERLA--S-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV  152 (417)
Q Consensus        76 ~~l~l~g~~~l~~l~--~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l  152 (417)
                       .+.+.++ .+..++  . +.|+|++|.+.+ +|. ++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++.+
T Consensus       427 -~l~l~~n-~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          427 -SKFLLEN-SVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             -HHHHHHH-HHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             -hhhhhcc-cccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence             1111111 122222  4 789999996654 787 999999999999999977 8899999999999999999999989


Q ss_pred             chhccCCCCCcEEEccCCCCChhhhhcccCC-CCccccC-CcceeecCCCccc-cCcC
Q 014835          153 PESLGQLSSLKILVLSNIKRLPEYLQLHLQL-PENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       153 p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~l-p~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      | .++.+++|+.|+|++|. +++.      . |..+..+ .|+.|++++|.++ +|+.
T Consensus       502 p-~l~~l~~L~~L~Ls~N~-l~~~------~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNR-LQQS------AAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSC-CCSS------STTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             c-ccCCCCCCcEEECCCCC-CCCC------CCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            8 89999999999999998 5533      3 8888899 9999999999988 5553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=2.4e-15  Score=136.52  Aligned_cols=139  Identities=17%  Similarity=0.159  Sum_probs=121.0

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc--cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS--SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      ++|..+...+++|+|++|.|+.++.  .+..+++|++|+|++|.+.+..+..+.++++|++|+|++|. +..++.     
T Consensus        25 ~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----   98 (220)
T 2v70_A           25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQH-----   98 (220)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCG-----
T ss_pred             cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCH-----
Confidence            4676554578999999999998853  38899999999999988777767789999999999999964 455542     


Q ss_pred             cCCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835           80 IDGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR  150 (417)
Q Consensus        80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~  150 (417)
                          ..+..+++ +.|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+.
T Consensus        99 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           99 ----KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ----GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ----hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence                56888999 99999999988888999999999999999999999888999999999999999999883

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=5e-15  Score=152.60  Aligned_cols=150  Identities=20%  Similarity=0.247  Sum_probs=97.5

Q ss_pred             CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC----CCCccccCCC--ccccccc-c-ceEEcCCCCCCCC
Q 014835           33 NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----EIPSCNIDGG--IGIERLA-S-CRLVLEDCSSLQS  104 (417)
Q Consensus        33 ~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----~l~~l~l~g~--~~l~~l~-~-~~L~L~~n~~l~~  104 (417)
                      +|+.|+|++|.+.+ +|..+  +++|++|+|++| .++.+|    .+..|+++++  ..+..+. + +.|+|++|.+.+ 
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~-  134 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM-  134 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccccccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-
Confidence            89999999987655 88766  389999999996 455655    2333555554  1122122 4 777777775544 


Q ss_pred             CcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCC
Q 014835          105 LPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLP  184 (417)
Q Consensus       105 lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp  184 (417)
                      +|.   .+++|+.|++++|.+.+ +|.   .+++|+.|+|++|.++.+|. +.  ++|+.|+|++|. ++ .      +|
T Consensus       135 lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~-~------lp  196 (571)
T 3cvr_A          135 LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LE-S------LP  196 (571)
T ss_dssp             CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CS-S------CC
T ss_pred             CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CC-c------hh
Confidence            555   56777777777777554 554   46677777777777766776 54  677777777776 44 3      55


Q ss_pred             CccccCCc-------ceeecCCCccc-cCcC
Q 014835          185 ENGLEGIP-------EYLRRSPRKLT-LDPN  207 (417)
Q Consensus       185 ~~l~~l~L-------~~L~l~~n~L~-lp~~  207 (417)
                      . +.. .|       +.|++++|.|+ +|..
T Consensus       197 ~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~  225 (571)
T 3cvr_A          197 A-VPV-RNHHSEETEIFFRCRENRITHIPEN  225 (571)
T ss_dssp             C-CC---------CCEEEECCSSCCCCCCGG
T ss_pred             h-HHH-hhhcccccceEEecCCCcceecCHH
Confidence            5 322 45       77777777776 6653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.61  E-value=2.4e-14  Score=144.07  Aligned_cols=147  Identities=24%  Similarity=0.233  Sum_probs=87.6

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC------CCccccCCC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE------IPSCNIDGG   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~------l~~l~l~g~   83 (417)
                      +|++|++++|.++.+| .++.+++|++|++++|.+.+ +|..+   .+|++|++++|. ++.+|.      +..++++++
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCC
Confidence            6777888877777777 47777777777777765443 55432   467777777653 222332      233444444


Q ss_pred             --cccccc-cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           84 --IGIERL-AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        84 --~~l~~l-~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                        ..+... ++ +.|++++|.+. .+|. +..+++|++|++++|.+.+ +|..   +++|+.|++++|.+..+|..   +
T Consensus       206 ~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~  276 (454)
T 1jl5_A          206 SLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---P  276 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---C
T ss_pred             cCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---c
Confidence              112122 34 77777777544 5663 6677777777777776554 4432   35666666666666655542   2


Q ss_pred             CCCcEEEccCCC
Q 014835          160 SSLKILVLSNIK  171 (417)
Q Consensus       160 ~~L~~L~L~~n~  171 (417)
                      ++|+.|++++|.
T Consensus       277 ~~L~~L~ls~N~  288 (454)
T 1jl5_A          277 QSLTFLDVSENI  288 (454)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CcCCEEECcCCc
Confidence            455555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.61  E-value=1.5e-14  Score=150.77  Aligned_cols=174  Identities=24%  Similarity=0.297  Sum_probs=105.8

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC----CCCccccCCC--
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT----EIPSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp----~l~~l~l~g~--   83 (417)
                      +++.|++++|.|+.+|..+.  ++|++|+|++|.+. .+|.   .+++|++|+|++|. ++.+|    .+..|+++++  
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPL  113 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECSCCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcCCcC
Confidence            57788888888888887665  68888888886544 5665   46788888888854 44444    3444555555  


Q ss_pred             cccc-cccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcc---cCCC--------------CCCCEEEe
Q 014835           84 IGIE-RLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDE---LGNL--------------EALETLIV  144 (417)
Q Consensus        84 ~~l~-~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~---l~~l--------------~~L~~L~L  144 (417)
                      ..+. .+++ +.|++++|.+. .+|..   +++|++|++++|.+.+ +|..   +..+              ++|+.|++
T Consensus       114 ~~l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L  188 (622)
T 3g06_A          114 THLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSV  188 (622)
T ss_dssp             CCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             CCCCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEEC
Confidence            1111 3455 77788777543 45543   4777777777776543 2222   2222              67777777


Q ss_pred             eccCCCCcchhccC-----------------CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cC
Q 014835          145 DRTAMREVPESLGQ-----------------LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LD  205 (417)
Q Consensus       145 ~~n~l~~lp~~l~~-----------------L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp  205 (417)
                      ++|.++.+|..+..                 +++|+.|+|++|. ++ .      +|   ..+ +|+.|++++|.|+ +|
T Consensus       189 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~-~------lp---~~l~~L~~L~Ls~N~L~~lp  257 (622)
T 3g06_A          189 SDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LT-S------LP---VLPSELKELMVSGNRLTSLP  257 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CS-C------CC---CCCTTCCEEECCSSCCSCCC
T ss_pred             CCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc-cC-c------CC---CCCCcCcEEECCCCCCCcCC
Confidence            77777666543211                 1445555555555 33 1      44   233 6777777777766 65


Q ss_pred             c
Q 014835          206 P  206 (417)
Q Consensus       206 ~  206 (417)
                      .
T Consensus       258 ~  258 (622)
T 3g06_A          258 M  258 (622)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=6e-17  Score=155.95  Aligned_cols=176  Identities=13%  Similarity=0.131  Sum_probs=114.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcc-ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLES-ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~-lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      +++.|++++|.++..+..+..+++|++|+|++|.+... +|..+..+++|++|++++|......+          ..+..
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~----------~~l~~  140 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----------NTLAK  140 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH----------HHHTT
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH----------HHHhc
Confidence            56666666666665555566667777777777665544 56556667777777777653222222          34566


Q ss_pred             ccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccc-cCCcc-CCcccCCCC-CCCEEEeeccC--C--CCcchhccC
Q 014835           89 LAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDC-QYFMI-LPDELGNLE-ALETLIVDRTA--M--REVPESLGQ  158 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n-~~~~~-lp~~l~~l~-~L~~L~L~~n~--l--~~lp~~l~~  158 (417)
                      +++ +.|++++|..++  .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|.  +  ..+|..+..
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            777 778887774333  35666667778888888877 65543 455666777 78888887773  3  456666677


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~  201 (417)
                      +++|+.|++++|..+++.      .+..+..+ .|+.|++++|.
T Consensus       221 ~~~L~~L~l~~~~~l~~~------~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKND------CFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCSEEECTTCTTCCGG------GGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEeCCCCCcCCHH------HHHHHhCCCCCCEeeCCCCC
Confidence            778888888777754434      45566666 78888887775

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=2.2e-15  Score=140.54  Aligned_cols=167  Identities=16%  Similarity=0.165  Sum_probs=130.7

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +++.++++++.++.++ .+..+++|++|++++|.+ ..+| .+..+++|++|+|++| .+..++           .+..+
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N-~i~~~~-----------~l~~l   84 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHN-QISDLS-----------PLKDL   84 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCG-----------GGTTC
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCC-ccCCCh-----------hhccC
Confidence            6777788888888887 478888999999998754 4566 5788899999999885 344443           26778


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|++++|.+.+ +|... . ++|+.|++++|.+.+ ++ .++.+++|+.|++++|.++.++ .+..+++|+.|+|+
T Consensus        85 ~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLH  158 (263)
T ss_dssp             SSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECT
T ss_pred             CCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECC
Confidence            88 889999886544 55433 3 899999999998765 33 5889999999999999998886 68889999999999


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCc
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~  206 (417)
                      +|. ++ .      + ..+..+ .|+.|++++|.++ .|.
T Consensus       159 ~N~-i~-~------~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          159 GNE-IT-N------T-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             TSC-CC-B------C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CCc-Cc-c------h-HHhccCCCCCEEeCCCCcccCCcc
Confidence            998 54 2      4 456677 9999999999977 443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=6.2e-15  Score=153.26  Aligned_cols=150  Identities=22%  Similarity=0.322  Sum_probs=129.9

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.+... +|+.|+|++|.|+.+|+ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|. +..+        
T Consensus        57 ~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~-l~~l--------  124 (605)
T 1m9s_A           57 SVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNG-ISDI--------  124 (605)
T ss_dssp             CCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSC-CCCC--------
T ss_pred             CChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCC-CCCC--------
Confidence            46666666 99999999999999887 9999999999999986554 55 58999999999999964 3333        


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..+..+++ +.|+|++|.+...  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+..+| .+..+
T Consensus       125 ---~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l  196 (605)
T 1m9s_A          125 ---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGL  196 (605)
T ss_dssp             ---GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred             ---ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccC
Confidence               35778899 9999999977654  678899999999999999877655  899999999999999998886 58999


Q ss_pred             CCCcEEEccCCC
Q 014835          160 SSLKILVLSNIK  171 (417)
Q Consensus       160 ~~L~~L~L~~n~  171 (417)
                      ++|+.|+|++|+
T Consensus       197 ~~L~~L~L~~N~  208 (605)
T 1m9s_A          197 KNLDVLELFSQE  208 (605)
T ss_dssp             TTCSEEECCSEE
T ss_pred             CCCCEEEccCCc
Confidence            999999999998

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=1.6e-16  Score=156.28  Aligned_cols=191  Identities=14%  Similarity=0.149  Sum_probs=138.8

Q ss_pred             cccEEEeecCCCcc-----cCccccCCcCcceeeccccc---cCccccccC-------CCCCCCcEEeeecCCCCC----
Q 014835           10 HVYTLELVKVGIKE-----LPSSIECLSNLKKLYIVDCS---MLESISSSI-------FKLKSLQSIEISNCPIFE----   70 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~Ls~n~---~~~~lp~~l-------~~L~~L~~L~Ls~c~~l~----   70 (417)
                      +|++|+|++|.++.     ++..+..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|++|..-.    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            78888888888873     44457788888888888853   233445443       678888888888865432    


Q ss_pred             -------cCCCCCccccCCC-------cc----cccc---------cc-ceEEcCCCCCC-CCCc---ccccCCCCCcEE
Q 014835           71 -------RFTEIPSCNIDGG-------IG----IERL---------AS-CRLVLEDCSSL-QSLP---SSLCMFKSLTSL  118 (417)
Q Consensus        71 -------~lp~l~~l~l~g~-------~~----l~~l---------~~-~~L~L~~n~~l-~~lp---~~l~~l~~L~~L  118 (417)
                             ..+.+..|+++++       ..    +..+         ++ +.|++++|.+. ..+|   ..+..+++|++|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence                   2355666777776       12    2233         78 99999999876 3455   467788999999


Q ss_pred             ecccccCCc-----cCCcccCCCCCCCEEEeeccCC-----CCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc
Q 014835          119 EIIDCQYFM-----ILPDELGNLEALETLIVDRTAM-----REVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL  188 (417)
Q Consensus       119 ~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~n~l-----~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~  188 (417)
                      ++++|.+..     ..|..+..+++|+.|+|++|.+     ..+|..+..+++|+.|+|++|. +++...  ..+|..+.
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~--~~l~~~l~  269 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA--AAVVDAFS  269 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH--HHHHHHHH
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhH--HHHHHHHh
Confidence            999998763     3444788899999999999999     5678888999999999999998 542200  00344443


Q ss_pred             c--C-CcceeecCCCccc
Q 014835          189 E--G-IPEYLRRSPRKLT  203 (417)
Q Consensus       189 ~--l-~L~~L~l~~n~L~  203 (417)
                      .  . .|+.|++++|.++
T Consensus       270 ~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TCSSCCCCEEECCSSCCB
T ss_pred             hccCCCeEEEECcCCcCC
Confidence            3  6 8999999999976

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.1e-14  Score=132.89  Aligned_cols=136  Identities=21%  Similarity=0.265  Sum_probs=106.5

Q ss_pred             CCCCcccCcccEEEeecCCCccc-CccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKEL-PSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .+|.....+|++|+|++|.|+.+ |..+..+++|++|+|++|.+....+..+..+++|++|+|++| .++.+|       
T Consensus        33 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~-------  104 (229)
T 3e6j_A           33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLP-------  104 (229)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-------
T ss_pred             ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccC-------
Confidence            46664445999999999999977 556899999999999998875544466789999999999996 233222       


Q ss_pred             CCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCC
Q 014835           81 DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L  159 (417)
                                               +..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+..+|. .+..+
T Consensus       105 -------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  158 (229)
T 3e6j_A          105 -------------------------SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL  158 (229)
T ss_dssp             -------------------------TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             -------------------------hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence                                     234567788888888888755 677778888888888888888877764 57788


Q ss_pred             CCCcEEEccCCC
Q 014835          160 SSLKILVLSNIK  171 (417)
Q Consensus       160 ~~L~~L~L~~n~  171 (417)
                      ++|+.|+|++|+
T Consensus       159 ~~L~~L~l~~N~  170 (229)
T 3e6j_A          159 SSLTHAYLFGNP  170 (229)
T ss_dssp             TTCCEEECTTSC
T ss_pred             CCCCEEEeeCCC
Confidence            888888888887

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=6.8e-15  Score=127.33  Aligned_cols=127  Identities=20%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      +|+.|+|++|.++  .+|..+..+++|++|+|++|.+.+.  ..+..+++|++|++++|                     
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N---------------------   81 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN---------------------   81 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC---------------------
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC---------------------
Confidence            5666666666665  5665556666666666666554333  34555666666666654                     


Q ss_pred             ccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCCCcch----hccCCCCC
Q 014835           88 RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMREVPE----SLGQLSSL  162 (417)
Q Consensus        88 ~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L  162 (417)
                                  .+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+..+|.    .+..+++|
T Consensus        82 ------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           82 ------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             ------------CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             ------------cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence                        33333555555677777777777765442 12566777777777777777766665    66777777


Q ss_pred             cEEEccCCC
Q 014835          163 KILVLSNIK  171 (417)
Q Consensus       163 ~~L~L~~n~  171 (417)
                      +.|++++|.
T Consensus       150 ~~L~l~~n~  158 (168)
T 2ell_A          150 TYLDGYDRE  158 (168)
T ss_dssp             CEETTEETT
T ss_pred             cEecCCCCC
Confidence            777777776

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=2.5e-14  Score=138.94  Aligned_cols=185  Identities=16%  Similarity=0.104  Sum_probs=146.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      .-++++-+++++++||..+  .++|++|+|++|++. .+| ..|.++++|++|+|++|..++.+|.         ..+.+
T Consensus        10 ~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---------~~f~~   77 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEA---------DVFSN   77 (350)
T ss_dssp             ETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECT---------TSBCS
T ss_pred             eCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccCh---------hHhhc
Confidence            4578899999999999877  368999999997655 555 5689999999999999887777775         56788


Q ss_pred             ccc-c-eEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeec-cCCCCcch-hccCC-CCCc
Q 014835           89 LAS-C-RLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDR-TAMREVPE-SLGQL-SSLK  163 (417)
Q Consensus        89 l~~-~-~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~-n~l~~lp~-~l~~L-~~L~  163 (417)
                      +++ . .+.+..|.+....|..+..+++|++|++++|.+....+..+....++..|++.+ +.+..+|. .+..+ ..|+
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  157 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence            888 5 456666766666678899999999999999998776666677778888999976 56777775 45555 4689


Q ss_pred             EEEccCCCCChhhhhcccCCCCccccC-CcceeecCC-Cccc-cCcCccccccc
Q 014835          164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSP-RKLT-LDPNELSEIVK  214 (417)
Q Consensus       164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~-n~L~-lp~~~L~~l~~  214 (417)
                      .|+|++|. ++ .      +|...+.. .|+.|++.+ |.++ +|+..+..+..
T Consensus       158 ~L~L~~N~-i~-~------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          158 ILWLNKNG-IQ-E------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             EEECCSSC-CC-E------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             hhcccccc-cc-C------CChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence            99999999 55 3      78788888 999999986 5577 88875555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=9.9e-16  Score=162.81  Aligned_cols=153  Identities=20%  Similarity=0.227  Sum_probs=94.7

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccc----cccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVD----CSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIG   85 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~----n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~   85 (417)
                      +++.|+|.+|.+..+|..+.....|..+.+..    ++.+...|..+..+++|+.|+|++|. +..+|          ..
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~----------~~  242 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNIS----------AN  242 (727)
T ss_dssp             ------------------------------------------------CCCCCCEEECTTSC-CSCCC----------GG
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCC----------hh
Confidence            57889998888887777655555555554433    12233557778889999999999864 45666          46


Q ss_pred             cccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcE
Q 014835           86 IERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKI  164 (417)
Q Consensus        86 l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~  164 (417)
                      +..++. +.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++.+++|+.
T Consensus       243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF  320 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred             hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence            678888 99999999766 88999999999999999999977 7899999999999999999999999988999999999


Q ss_pred             EEccCCCCChhh
Q 014835          165 LVLSNIKRLPEY  176 (417)
Q Consensus       165 L~L~~n~~l~~~  176 (417)
                      |+|++|. +.+.
T Consensus       321 L~L~~N~-l~~~  331 (727)
T 4b8c_D          321 LGVEGNP-LEKQ  331 (727)
T ss_dssp             EECTTSC-CCSH
T ss_pred             EeCCCCc-cCCC
Confidence            9999998 5533

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.3e-14  Score=125.57  Aligned_cols=135  Identities=21%  Similarity=0.207  Sum_probs=109.6

Q ss_pred             cCCcCcceeeccccccC-ccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcc
Q 014835           29 ECLSNLKKLYIVDCSML-ESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPS  107 (417)
Q Consensus        29 ~~L~~L~~L~Ls~n~~~-~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~  107 (417)
                      ...++|+.|++++|.+. +.+|..+..+++|++|++++|.                                 +. .+ .
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~---------------------------------l~-~~-~   65 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG---------------------------------LI-SV-S   65 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC---------------------------------CC-CC-S
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC---------------------------------CC-Ch-h
Confidence            34577888888887765 5777777788888888888862                                 11 22 4


Q ss_pred             cccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCCCChhhhhcccCCCC
Q 014835          108 SLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE  185 (417)
Q Consensus       108 ~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~  185 (417)
                      .+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.++.+|  ..+..+++|+.|++++|. +. .      +|.
T Consensus        66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~-~------~~~  137 (168)
T 2ell_A           66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VT-N------LND  137 (168)
T ss_dssp             SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GG-T------STT
T ss_pred             hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-Cc-c------hHH
Confidence            5678999999999999988888888888999999999999998877  689999999999999998 55 2      555


Q ss_pred             ----ccccC-CcceeecCCCccc-cCc
Q 014835          186 ----NGLEG-IPEYLRRSPRKLT-LDP  206 (417)
Q Consensus       186 ----~l~~l-~L~~L~l~~n~L~-lp~  206 (417)
                          .+..+ .|+.|++++|.+. +|.
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          138 YRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             HHHHHHHhCccCcEecCCCCChhhccc
Confidence                56677 9999999999976 654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=5.9e-16  Score=152.28  Aligned_cols=187  Identities=13%  Similarity=0.042  Sum_probs=111.6

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcc----ccccCCCCCCCcEEeeecCCC--CC-cCCC-CCccccC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLES----ISSSIFKLKSLQSIEISNCPI--FE-RFTE-IPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~----lp~~l~~L~~L~~L~Ls~c~~--l~-~lp~-l~~l~l~   81 (417)
                      .|+...++...+..++..+..+++|++|+|++|.+...    ++..+..+++|++|+|++|..  +. .+|. +..+  .
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l--~   87 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL--L   87 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH--H
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH--H
Confidence            44444444445557888889999999999999987765    444578899999999999732  11 1120 0000  0


Q ss_pred             CCcccccccc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCccCCc----ccCCC---------CCCCEEE
Q 014835           82 GGIGIERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFMILPD----ELGNL---------EALETLI  143 (417)
Q Consensus        82 g~~~l~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l---------~~L~~L~  143 (417)
                        ..+..+++ +.|+|++|.+..    .+|..+..+++|++|+|++|.+....+.    .+..+         ++|++|+
T Consensus        88 --~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           88 --QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             --HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             --HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence              12345666 777777776655    3566666677777777777765432222    22223         6777777


Q ss_pred             eeccCCC--Ccc---hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCcc
Q 014835          144 VDRTAMR--EVP---ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKL  202 (417)
Q Consensus       144 L~~n~l~--~lp---~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L  202 (417)
                      +++|.++  .+|   ..+..+++|+.|+|++|. +.+... ..-+|..+..+ .|+.|++++|.+
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~-~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGI-EHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHH-HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHH-HHHHHHHhhcCCCccEEECcCCCC
Confidence            7777764  344   345566677777777776 331100 00023244555 677777777766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=8.5e-15  Score=124.10  Aligned_cols=68  Identities=18%  Similarity=0.094  Sum_probs=40.0

Q ss_pred             CCCCCcccccCCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCCCcch----hccCCCCCcEEEcc
Q 014835          101 SLQSLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMREVPE----SLGQLSSLKILVLS  168 (417)
Q Consensus       101 ~l~~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L~  168 (417)
                      +.+.+|..+..+++|++|++++|.+.+. .+..++.+++|++|++++|.++.+|.    .+..+++|+.|+++
T Consensus        76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            3333555555566666666666665442 23556666666666666666655554    45666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=9e-14  Score=123.44  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=97.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .-+.++++++.++++|..+.  ++|++|+|++|.+ ..+|..+.++++|++|+|++|.                      
T Consensus        11 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~----------------------   65 (193)
T 2wfh_A           11 LDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNR----------------------   65 (193)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSC----------------------
T ss_pred             CCCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCc----------------------
Confidence            34678888888888887654  5888889888655 4677778888888888888852                      


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEcc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~  168 (417)
                                 +.+..+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+..+|. .+..+++|+.|+|+
T Consensus        66 -----------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           66 -----------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             -----------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             -----------CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence                       222334456778888888888888877777778888888888888888887776 47778888888888


Q ss_pred             CCC
Q 014835          169 NIK  171 (417)
Q Consensus       169 ~n~  171 (417)
                      +|+
T Consensus       135 ~N~  137 (193)
T 2wfh_A          135 ANP  137 (193)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            887

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.51  E-value=6e-14  Score=124.38  Aligned_cols=127  Identities=21%  Similarity=0.206  Sum_probs=98.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccc-cCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISS-SIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      .-++|++++++++++|..+..  +|++|+|++|.+.+..+. .+..+++|++|+|++|.                     
T Consensus         9 ~~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~---------------------   65 (192)
T 1w8a_A            9 EGTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---------------------   65 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---------------------
T ss_pred             CCCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC---------------------
Confidence            457899999999999986654  899999999766554443 37788888888888852                     


Q ss_pred             cccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCCCCcEEEc
Q 014835           89 LASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLSSLKILVL  167 (417)
Q Consensus        89 l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L  167 (417)
                                  +.+..|..+..+++|++|+|++|.+.+..+..++.+++|++|+|++|.++.+ |..+..+++|++|+|
T Consensus        66 ------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           66 ------------LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             ------------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             ------------CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence                        3334456677788888888888888777777788888888888888888644 667788888888888


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      ++|+
T Consensus       134 ~~N~  137 (192)
T 1w8a_A          134 ASNP  137 (192)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=3.2e-14  Score=124.22  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=74.5

Q ss_pred             CcccC-cccEEEeecCCCcccCccccCCc-CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835            5 SVTSC-HVYTLELVKVGIKELPSSIECLS-NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG   82 (417)
Q Consensus         5 ~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g   82 (417)
                      .+... +|+.|+|++|.++.+|. +..+. +|++|+|++|.+.+ + ..+..+++|++|++++|.               
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~---------------   75 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNR---------------   75 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSC---------------
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCc---------------
Confidence            33444 66666666666666654 33333 66666666655443 2 345666666666666641               


Q ss_pred             CccccccccceEEcCCCCCCCCCcc-cccCCCCCcEEecccccCCccCCc--ccCCCCCCCEEEeeccCCCCcchh----
Q 014835           83 GIGIERLASCRLVLEDCSSLQSLPS-SLCMFKSLTSLEIIDCQYFMILPD--ELGNLEALETLIVDRTAMREVPES----  155 (417)
Q Consensus        83 ~~~l~~l~~~~L~L~~n~~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~----  155 (417)
                                        + ..+|. .+..+++|++|++++|.+ +.+|.  .++.+++|+.|++++|.+..+|..    
T Consensus        76 ------------------l-~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~  135 (176)
T 1a9n_A           76 ------------------I-CRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV  135 (176)
T ss_dssp             ------------------C-CEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH
T ss_pred             ------------------c-cccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHH
Confidence                              1 12222 235566666666666664 33444  566666666666666666666653    


Q ss_pred             ccCCCCCcEEEccCCC
Q 014835          156 LGQLSSLKILVLSNIK  171 (417)
Q Consensus       156 l~~L~~L~~L~L~~n~  171 (417)
                      +..+++|+.|+++.|.
T Consensus       136 ~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          136 IYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHHCTTCSEETTEECC
T ss_pred             HHHCCccceeCCCcCC
Confidence            6666667777766665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.48  E-value=1.6e-15  Score=147.95  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             CCcccC--cccEEEeecCCCcccC-----ccccCCc-CcceeeccccccCccccccCCCC-----CCCcEEeeecCC
Q 014835            4 PSVTSC--HVYTLELVKVGIKELP-----SSIECLS-NLKKLYIVDCSMLESISSSIFKL-----KSLQSIEISNCP   67 (417)
Q Consensus         4 P~~~~~--~L~~L~Ls~n~l~~lp-----~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~L-----~~L~~L~Ls~c~   67 (417)
                      |++...  +|++|+|++|.++.++     ..+..++ +|++|+|++|.+....+..+..+     ++|++|+|++|.
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            445555  5999999999999776     4577888 89999999988777666656554     899999999975

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=5.1e-14  Score=119.25  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=103.2

Q ss_pred             CCcCcceeeccccccC-ccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCccc
Q 014835           30 CLSNLKKLYIVDCSML-ESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSS  108 (417)
Q Consensus        30 ~L~~L~~L~Ls~n~~~-~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~  108 (417)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|. +.                                 .+ ..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~---------------------------------~~-~~   59 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LT---------------------------------SI-AN   59 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CC---------------------------------CC-TT
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CC---------------------------------Cc-hh
Confidence            3578899999998776 5788878889999999998862 11                                 12 45


Q ss_pred             ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--hhccCCCCCcEEEccCCCCChhhhhcccCCCC-
Q 014835          109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPE-  185 (417)
Q Consensus       109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~-  185 (417)
                      +..+++|++|++++|.+.+.+|..++.+++|++|++++|.++.+|  ..+..+++|++|++++|. +++       +|. 
T Consensus        60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~-------~~~~  131 (149)
T 2je0_A           60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTN-------LNDY  131 (149)
T ss_dssp             CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGG-------STTH
T ss_pred             hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccc-------hHHH
Confidence            668899999999999988878888888999999999999998875  789999999999999998 552       454 


Q ss_pred             ---ccccC-CcceeecCC
Q 014835          186 ---NGLEG-IPEYLRRSP  199 (417)
Q Consensus       186 ---~l~~l-~L~~L~l~~  199 (417)
                         .+..+ +|+.|++++
T Consensus       132 ~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          132 RENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHCCCcccccCCC
Confidence               46667 899988763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=4.5e-13  Score=116.89  Aligned_cols=127  Identities=17%  Similarity=0.254  Sum_probs=96.7

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      ..+.+++++++++.+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|. ++.+|                
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------------   68 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLP----------------   68 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC----------------
T ss_pred             CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeC----------------
Confidence            56889999999999986554  789999999987766555567888999999998852 22222                


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEcc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~  168 (417)
                                      +..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|.. +..+++|++|+|+
T Consensus        69 ----------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           69 ----------------DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ----------------hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence                            23356778888888888887766666677888888888888888777764 4678888888888


Q ss_pred             CCC
Q 014835          169 NIK  171 (417)
Q Consensus       169 ~n~  171 (417)
                      +|+
T Consensus       133 ~N~  135 (177)
T 2o6r_A          133 TNP  135 (177)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            887

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.44  E-value=9.3e-14  Score=129.49  Aligned_cols=145  Identities=22%  Similarity=0.180  Sum_probs=118.4

Q ss_pred             CCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccc
Q 014835           30 CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSS  108 (417)
Q Consensus        30 ~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~  108 (417)
                      .+.++..++++++.+. .++ .+..+++|++|++++| .++.+|           .+..+++ +.|++++|.+.+ +|. 
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n-~i~~l~-----------~l~~l~~L~~L~L~~N~i~~-~~~-   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNS-NIQSLA-----------GMQFFTNLKELHLSHNQISD-LSP-   80 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTS-CCCCCT-----------TGGGCTTCCEEECCSSCCCC-CGG-
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCC-Ccccch-----------HHhhCCCCCEEECCCCccCC-Chh-
Confidence            5778888999986544 455 4778999999999996 455554           4677888 999999997655 444 


Q ss_pred             ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc
Q 014835          109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL  188 (417)
Q Consensus       109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~  188 (417)
                      +..+++|++|++++|.+.+ +|... . ++|+.|++++|.++.++ .+..+++|+.|+|++|+ ++ .      ++ .+.
T Consensus        81 l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~-~------~~-~l~  147 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LK-S------IV-MLG  147 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CC-B------CG-GGG
T ss_pred             hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CC-C------Ch-HHc
Confidence            8899999999999998665 45433 3 99999999999998886 58999999999999999 55 2      54 577


Q ss_pred             cC-CcceeecCCCccc
Q 014835          189 EG-IPEYLRRSPRKLT  203 (417)
Q Consensus       189 ~l-~L~~L~l~~n~L~  203 (417)
                      .+ .|+.|++++|.++
T Consensus       148 ~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          148 FLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             GCTTCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCcCc
Confidence            78 9999999999987

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.43  E-value=2.1e-13  Score=140.84  Aligned_cols=101  Identities=17%  Similarity=0.273  Sum_probs=63.7

Q ss_pred             CcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcccccCC
Q 014835           33 NLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMF  112 (417)
Q Consensus        33 ~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l  112 (417)
                      .|+.|+|++|.+.+ +|. ++.+++|++|+|++|. +.                                 .+|..++.+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~-l~---------------------------------~lp~~~~~l  485 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR-LR---------------------------------ALPPALAAL  485 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC-CC---------------------------------CCCGGGGGC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccc-cc---------------------------------ccchhhhcC
Confidence            58888888876554 676 8888888888888852 22                                 344455555


Q ss_pred             CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc--chhccCCCCCcEEEccCCC
Q 014835          113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV--PESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~L~~L~~L~L~~n~  171 (417)
                      ++|+.|+|++|.+.+ +| .++.+++|+.|+|++|.++.+  |..++.+++|+.|+|++|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            566666666655444 44 555566666666666666544  5556666666666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.43  E-value=6.8e-13  Score=117.75  Aligned_cols=115  Identities=16%  Similarity=0.173  Sum_probs=94.3

Q ss_pred             CCCCcccCcccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccC
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID   81 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~   81 (417)
                      ++|.....+|++|+|++|.|+.+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|. +.           
T Consensus        24 ~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~-----------   91 (193)
T 2wfh_A           24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LR-----------   91 (193)
T ss_dssp             SCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-----------
T ss_pred             cCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cC-----------
Confidence            466544448999999999999999989999999999999998887777789999999999999962 22           


Q ss_pred             CCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC
Q 014835           82 GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM  149 (417)
Q Consensus        82 g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l  149 (417)
                                           ...|..+..+++|++|+|++|.+....+..+..+++|+.|++++|.+
T Consensus        92 ---------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           92 ---------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             ---------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ---------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence                                 22344567788888888888887765556688888999999988877

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=1.5e-12  Score=115.34  Aligned_cols=126  Identities=14%  Similarity=0.121  Sum_probs=100.8

Q ss_pred             ceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcc-cccCCC
Q 014835           35 KKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPS-SLCMFK  113 (417)
Q Consensus        35 ~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~-~l~~l~  113 (417)
                      ++|+++++. ++.+|..+..  +|++|++++|                                 .+.+..+. .+..++
T Consensus        11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n---------------------------------~i~~~~~~~~~~~l~   54 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDN---------------------------------ELGRISSDGLFGRLP   54 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCCT--TCSEEECCSC---------------------------------CCCSBCCSCSGGGCT
T ss_pred             CEEEcCCCC-cCcCccCCCC--CCCEEECCCC---------------------------------cCCccCCccccccCC
Confidence            677777754 3566665532  6777777774                                 22222222 377899


Q ss_pred             CCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-C
Q 014835          114 SLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-I  191 (417)
Q Consensus       114 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~  191 (417)
                      +|++|+|++|.+.+..|..++.+++|++|+|++|.++.++. .+..+++|++|+|++|. +++.      .|..+..+ .
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~------~~~~~~~l~~  127 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCV------MPGSFEHLNS  127 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEE------CTTSSTTCTT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCee------CHHHhhcCCC
Confidence            99999999999999889999999999999999999987765 58899999999999999 6645      67778888 9


Q ss_pred             cceeecCCCccc
Q 014835          192 PEYLRRSPRKLT  203 (417)
Q Consensus       192 L~~L~l~~n~L~  203 (417)
                      |+.|++++|+++
T Consensus       128 L~~L~L~~N~l~  139 (192)
T 1w8a_A          128 LTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECTTCCBC
T ss_pred             CCEEEeCCCCcc
Confidence            999999999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=4.5e-14  Score=150.06  Aligned_cols=130  Identities=22%  Similarity=0.193  Sum_probs=94.1

Q ss_pred             EEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-
Q 014835           13 TLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-   91 (417)
Q Consensus        13 ~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-   91 (417)
                      .++++.|.+...|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++| .+..+|          ..+..+++ 
T Consensus       205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp----------~~~~~l~~L  272 (727)
T 4b8c_D          205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELP----------AEIKNLSNL  272 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCC----------GGGGGGTTC
T ss_pred             CccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccC----------hhhhCCCCC
Confidence            333444444445666888999999999997655 67777888999999999985 455777          57888999 


Q ss_pred             ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC-Ccchhc
Q 014835           92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR-EVPESL  156 (417)
Q Consensus        92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l  156 (417)
                      +.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+
T Consensus       273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            99999999766 78999999999999999999764 78888999999999999999995 444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.40  E-value=3.6e-14  Score=142.34  Aligned_cols=191  Identities=16%  Similarity=0.144  Sum_probs=118.6

Q ss_pred             cccEEEeecCCCcc-cCccc-cCCc----CcceeeccccccCc----cccccCCCCCCCcEEeeecCCCC----------
Q 014835           10 HVYTLELVKVGIKE-LPSSI-ECLS----NLKKLYIVDCSMLE----SISSSIFKLKSLQSIEISNCPIF----------   69 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~-lp~~i-~~L~----~L~~L~Ls~n~~~~----~lp~~l~~L~~L~~L~Ls~c~~l----------   69 (417)
                      +|++|+|++|.++. .+..+ ..++    +|++|+|++|.+..    .+|..+..+++|++|++++|..-          
T Consensus        57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  136 (461)
T 1z7x_W           57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  136 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence            78888888888873 22222 3344    68888888887663    56777888888888888886531          


Q ss_pred             --CcCCCCCccccCCC-----------cccccccc-ceEEcCCCCCCCCCccccc-----CCCCCcEEecccccCCcc--
Q 014835           70 --ERFTEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQSLPSSLC-----MFKSLTSLEIIDCQYFMI--  128 (417)
Q Consensus        70 --~~lp~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~lp~~l~-----~l~~L~~L~L~~n~~~~~--  128 (417)
                        ...+.+..++++++           ..+..+++ +.|++++|.+....+..+.     .+++|++|++++|.+...  
T Consensus       137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  216 (461)
T 1z7x_W          137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  216 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence              11234555666655           12344567 8888888765443232222     355788888888776553  


Q ss_pred             --CCcccCCCCCCCEEEeeccCCCCc------chhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCC
Q 014835          129 --LPDELGNLEALETLIVDRTAMREV------PESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSP  199 (417)
Q Consensus       129 --lp~~l~~l~~L~~L~L~~n~l~~l------p~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~  199 (417)
                        ++..+..+++|++|++++|.++..      +.....+++|++|++++|. +++...  ..++..+..+ .|+.|++++
T Consensus       217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGC--GDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHH--HHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHH--HHHHHHHhhCCCcceEECCC
Confidence              455666777788888888777432      2222357778888887776 442100  0023344455 777777777


Q ss_pred             Cccc
Q 014835          200 RKLT  203 (417)
Q Consensus       200 n~L~  203 (417)
                      |.++
T Consensus       294 n~i~  297 (461)
T 1z7x_W          294 NELG  297 (461)
T ss_dssp             CCCH
T ss_pred             CCCc
Confidence            7764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=1.9e-14  Score=144.42  Aligned_cols=187  Identities=18%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             cccEEEeecCCCccc-Ccccc-----CCcCcceeeccccccCcc----ccccCCCCCCCcEEeeecCCCCC---------
Q 014835           10 HVYTLELVKVGIKEL-PSSIE-----CLSNLKKLYIVDCSMLES----ISSSIFKLKSLQSIEISNCPIFE---------   70 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~l-p~~i~-----~L~~L~~L~Ls~n~~~~~----lp~~l~~L~~L~~L~Ls~c~~l~---------   70 (417)
                      +|++|+|++|.++.. +..+.     .+++|++|+|++|.+...    ++..+..+++|++|++++|..-.         
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            889999999988732 22232     356899999999876653    56667788899999999874211         


Q ss_pred             ---cCCCCCccccCCC-----------cccccccc-ceEEcCCCCCCCCCccccc-----CCCCCcEEecccccCCcc--
Q 014835           71 ---RFTEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQSLPSSLC-----MFKSLTSLEIIDCQYFMI--  128 (417)
Q Consensus        71 ---~lp~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~lp~~l~-----~l~~L~~L~L~~n~~~~~--  128 (417)
                         ..+.+..++++++           ..+..+++ +.|++++|.+....+..+.     ..++|++|++++|.+.+.  
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  330 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC  330 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence               1233333444433           11222444 5555555543222111111     123555555555554432  


Q ss_pred             --CCcccCCCCCCCEEEeeccCCCCc-chhc----cC-CCCCcEEEccCCCCChh----hhhcccCCCCccccC-Cccee
Q 014835          129 --LPDELGNLEALETLIVDRTAMREV-PESL----GQ-LSSLKILVLSNIKRLPE----YLQLHLQLPENGLEG-IPEYL  195 (417)
Q Consensus       129 --lp~~l~~l~~L~~L~L~~n~l~~l-p~~l----~~-L~~L~~L~L~~n~~l~~----~l~~~l~lp~~l~~l-~L~~L  195 (417)
                        ++..+..+++|++|++++|.++.. +..+    .. .++|+.|+|++|. +++    .      +|..+... .|+.|
T Consensus       331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~------l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSS------LAATLLANHSLREL  403 (461)
T ss_dssp             HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHH------HHHHHHHCCCCCEE
T ss_pred             HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHH------HHHHHHhCCCccEE
Confidence              333344455555555555555321 1111    11 4455555555554 332    2      34444444 55555


Q ss_pred             ecCCCccc
Q 014835          196 RRSPRKLT  203 (417)
Q Consensus       196 ~l~~n~L~  203 (417)
                      ++++|.++
T Consensus       404 ~l~~N~i~  411 (461)
T 1z7x_W          404 DLSNNCLG  411 (461)
T ss_dssp             ECCSSSCC
T ss_pred             ECCCCCCC
Confidence            55555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.37  E-value=5.5e-14  Score=137.05  Aligned_cols=188  Identities=14%  Similarity=0.022  Sum_probs=110.4

Q ss_pred             EEEeecCCCc-ccCccccCCcCcceeeccccccCcccc----ccCCCCC-CCcEEeeecCCCCCc------------CCC
Q 014835           13 TLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLESIS----SSIFKLK-SLQSIEISNCPIFER------------FTE   74 (417)
Q Consensus        13 ~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp----~~l~~L~-~L~~L~Ls~c~~l~~------------lp~   74 (417)
                      .++|+.|.++ .+|..+...++|++|+|++|.+....+    ..+.+++ +|++|+|++|..-..            .+.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4678889998 556656666779999999988766555    6677888 999999999743221            145


Q ss_pred             CCccccCCC-------c----ccccc-cc-ceEEcCCCCCCCCCccc----ccC-CCCCcEEecccccCCcc----CCcc
Q 014835           75 IPSCNIDGG-------I----GIERL-AS-CRLVLEDCSSLQSLPSS----LCM-FKSLTSLEIIDCQYFMI----LPDE  132 (417)
Q Consensus        75 l~~l~l~g~-------~----~l~~l-~~-~~L~L~~n~~l~~lp~~----l~~-l~~L~~L~L~~n~~~~~----lp~~  132 (417)
                      +..++++++       .    .+..+ ++ +.|+|++|.+....+..    +.. .++|++|++++|.+...    ++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            555566555       1    12233 45 66777666654443332    222 24677777776665532    2233


Q ss_pred             cCCCC-CCCEEEeeccCCCCcc-h----hccCC-CCCcEEEccCCCCChhhhhcccCCCCcccc-C-CcceeecCCCccc
Q 014835          133 LGNLE-ALETLIVDRTAMREVP-E----SLGQL-SSLKILVLSNIKRLPEYLQLHLQLPENGLE-G-IPEYLRRSPRKLT  203 (417)
Q Consensus       133 l~~l~-~L~~L~L~~n~l~~lp-~----~l~~L-~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~-l-~L~~L~l~~n~L~  203 (417)
                      +..++ +|++|+|++|.++... .    .+..+ ++|+.|+|++|. +.+..  ...++..+.. . .|+.|++++|.++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKS--YAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSC--HHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhH--HHHHHHHHhcCCCCceEEECcCCCCC
Confidence            33443 6777777777664332 2    23334 467777777766 44210  0002333333 2 6777777777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1.7e-14  Score=128.54  Aligned_cols=124  Identities=19%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             cccEEEeecC--CCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKV--GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n--~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      .|+.+.+.+.  .++++|..++.+++|++|+|++|.+.+ +| .+.++++|++|++++|. +..                
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~----------------   84 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKK----------------   84 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECS----------------
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-ccc----------------
Confidence            5666666663  566777788888889999998876555 67 67788888888888852 223                


Q ss_pred             ccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEE
Q 014835           88 RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKIL  165 (417)
Q Consensus        88 ~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L  165 (417)
                                       +|..+..+++|++|++++|.+.+ +| .++.+++|+.|++++|.+..++.  .+..+++|++|
T Consensus        85 -----------------l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           85 -----------------IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             -----------------CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             -----------------ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence                             34444445566666666665443 33 35556666666666666665543  55666666666


Q ss_pred             EccCCC
Q 014835          166 VLSNIK  171 (417)
Q Consensus       166 ~L~~n~  171 (417)
                      ++++|+
T Consensus       146 ~l~~N~  151 (198)
T 1ds9_A          146 LLAGNP  151 (198)
T ss_dssp             EECSCH
T ss_pred             EecCCc
Confidence            666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=9.4e-13  Score=114.83  Aligned_cols=131  Identities=16%  Similarity=0.125  Sum_probs=100.8

Q ss_pred             ccCCcCcceeeccccccCccccccCCCCC-CCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCc
Q 014835           28 IECLSNLKKLYIVDCSMLESISSSIFKLK-SLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLP  106 (417)
Q Consensus        28 i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~-~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp  106 (417)
                      +..+.+|+.|++++|.+. .+|. +..+. +|++|++++|.                                 +.+ + 
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~---------------------------------l~~-~-   57 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNE---------------------------------IRK-L-   57 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSC---------------------------------CCE-E-
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCC---------------------------------CCc-c-
Confidence            556777888888876554 4454 44444 77777777752                                 222 2 


Q ss_pred             ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcccCCC
Q 014835          107 SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLHLQLP  184 (417)
Q Consensus       107 ~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp  184 (417)
                      ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|.  .+..+++|+.|++++|+ +. .      +|
T Consensus        58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~-~------~~  129 (176)
T 1a9n_A           58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VT-N------KK  129 (176)
T ss_dssp             CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GG-G------ST
T ss_pred             cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CC-C------cH
Confidence            356788999999999999876544555899999999999999999987  88999999999999999 54 3      66


Q ss_pred             Cc----cccC-CcceeecCCCccc
Q 014835          185 EN----GLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       185 ~~----l~~l-~L~~L~l~~n~L~  203 (417)
                      ..    +..+ .|+.|+++.|.+.
T Consensus       130 ~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          130 HYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             THHHHHHHHCTTCSEETTEECCHH
T ss_pred             hHHHHHHHHCCccceeCCCcCCHH
Confidence            64    6777 9999999998854

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1.2e-11  Score=107.70  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|.....+|++|++++|.++.+|.. ++.+++|++|+|++|.+.+..+..+..+++|++|++++|. ++.+        
T Consensus        21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~--------   91 (177)
T 2o6r_A           21 SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSL--------   91 (177)
T ss_dssp             SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC--------
T ss_pred             cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-cccc--------
Confidence            35543333899999999999988875 6899999999999987766555667899999999999962 2222        


Q ss_pred             CCCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCC
Q 014835           81 DGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE  151 (417)
Q Consensus        81 ~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~  151 (417)
                                              .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus        92 ------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           92 ------------------------PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ------------------------CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                                    22345678888888888888775555556788889999998888743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=2e-11  Score=105.89  Aligned_cols=106  Identities=17%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      ..+.|++++|.++++|..+.  ++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|                
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~----------------   70 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLP----------------   70 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC----------------
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccC----------------
Confidence            56788888888888887663  778888888877776667777778888888888752 22222                


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR  150 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~  150 (417)
                                      +..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+.
T Consensus        71 ----------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           71 ----------------AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ----------------hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence                            223456666666666666655544445666666666666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=2.3e-11  Score=105.98  Aligned_cols=109  Identities=13%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .-+.++++++.++++|..+.  ++|++|+|++|.+.+..|..+.++++|++|+|++| .++.+|                
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~----------------   73 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIP----------------   73 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC----------------
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccC----------------
Confidence            44677888888888887664  67788888877766666666777777777777774 222222                


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP  153 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp  153 (417)
                                      +..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+...+
T Consensus        74 ----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           74 ----------------TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ----------------hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence                            122345666666666666655443334566666666666666554333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.21  E-value=1.7e-12  Score=134.37  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeee
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEIS   64 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls   64 (417)
                      +|+.|+++++....+|..+..+++|++|+|++|.+..... ..+..+++|++|+++
T Consensus       271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            5666666665445566555666666666666655322211 223455555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=1.5e-13  Score=122.27  Aligned_cols=120  Identities=22%  Similarity=0.215  Sum_probs=89.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|++|+|++|.++.+| .+..+++|++|++++|.+. .+|..+..+++|++|++++|. +.                   
T Consensus        49 ~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~-l~-------------------  106 (198)
T 1ds9_A           49 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IA-------------------  106 (198)
T ss_dssp             TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE-CC-------------------
T ss_pred             CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc-CC-------------------
Confidence            9999999999999999 7999999999999998655 678777778999999999962 21                   


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCCCc-ch----------hcc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMREV-PE----------SLG  157 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~----------~l~  157 (417)
                                    .+| .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+... |.          .+.
T Consensus       107 --------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A          107 --------------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             --------------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             --------------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence                          233 35566777777777776554221 3567777778888877777433 22          266


Q ss_pred             CCCCCcEEE
Q 014835          158 QLSSLKILV  166 (417)
Q Consensus       158 ~L~~L~~L~  166 (417)
                      .+++|+.|+
T Consensus       172 ~l~~L~~Ld  180 (198)
T 1ds9_A          172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCSEEC
T ss_pred             hCCCcEEEC
Confidence            778888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=1.2e-10  Score=111.78  Aligned_cols=189  Identities=12%  Similarity=0.120  Sum_probs=119.0

Q ss_pred             cccEEEeecCCCc--------------------ccCcc-ccC--------CcCcceeeccccccCccccccCCCCCCCcE
Q 014835           10 HVYTLELVKVGIK--------------------ELPSS-IEC--------LSNLKKLYIVDCSMLESISSSIFKLKSLQS   60 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--------------------~lp~~-i~~--------L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~   60 (417)
                      +|+.|||++|++.                    .||.. |..        +++|+.|+|.+ ++...-+.+|.++++|+.
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~  128 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI  128 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred             cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence            6999999999888                    55554 667        89999999988 554444567889999999


Q ss_pred             EeeecCCCCCcCCCCC--------ccccCCC-----------cccccccc-c-eEEcCCCCCCCCCccc-----------
Q 014835           61 IEISNCPIFERFTEIP--------SCNIDGG-----------IGIERLAS-C-RLVLEDCSSLQSLPSS-----------  108 (417)
Q Consensus        61 L~Ls~c~~l~~lp~l~--------~l~l~g~-----------~~l~~l~~-~-~L~L~~n~~l~~lp~~-----------  108 (417)
                      |++++|. +..++.-.        .+.....           ..+..... + .+.+...   +.++..           
T Consensus       129 l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          129 CQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             EEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGC
T ss_pred             EEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCcccc
Confidence            9999854 22333200        0000000           00111111 0 1111110   001110           


Q ss_pred             ----------------c-cCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCc-EEEccC
Q 014835          109 ----------------L-CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLK-ILVLSN  169 (417)
Q Consensus       109 ----------------l-~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~-~L~L~~  169 (417)
                                      + ..+++|+.|+|++|++...-+..|.++++|+.|++.+| +..++. .+..+++|+ .|++.+
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence                            0 12688999999988866666667888999999999887 777764 678888898 898877


Q ss_pred             CCCChhhhhcccCCC-CccccC-CcceeecCCCccc-cCcCcccccc
Q 014835          170 IKRLPEYLQLHLQLP-ENGLEG-IPEYLRRSPRKLT-LDPNELSEIV  213 (417)
Q Consensus       170 n~~l~~~l~~~l~lp-~~l~~l-~L~~L~l~~n~L~-lp~~~L~~l~  213 (417)
                       . ++ .      ++ ..+..+ .|+.|+++.|.++ ++...+....
T Consensus       284 -~-l~-~------I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          284 -S-VT-A------IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV  321 (329)
T ss_dssp             -T-CC-E------ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred             -c-ce-E------EchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence             3 44 2      44 345556 8999998888877 7776554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.13  E-value=2.7e-10  Score=98.69  Aligned_cols=66  Identities=21%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCC
Q 014835          106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIK  171 (417)
Q Consensus       106 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~  171 (417)
                      |..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus        47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            4445556666666666666554444445566666666666666655554 35556666666666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=3.4e-10  Score=98.49  Aligned_cols=59  Identities=19%  Similarity=0.284  Sum_probs=28.3

Q ss_pred             CCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchh-ccCCCCCcEEEccCCC
Q 014835          113 KSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPES-LGQLSSLKILVLSNIK  171 (417)
Q Consensus       113 ~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~n~  171 (417)
                      ++|+.|+|++|.+.+..|..++.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            4444455554444444444444455555555555555444432 2444555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=7.8e-10  Score=106.70  Aligned_cols=104  Identities=15%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             cEEEeecC-CCcccCccccCCcCcceeeccc-cccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           12 YTLELVKV-GIKELPSSIECLSNLKKLYIVD-CSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        12 ~~L~Ls~n-~l~~lp~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      ..++++++ +|+.||. +..+++|++|+|++ |.+.+..|..|.+|++|++|+|++|.                      
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~----------------------   67 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----------------------   67 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----------------------
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc----------------------
Confidence            35677776 7878887 77778888888875 55555445667777777777777752                      


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR  150 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~  150 (417)
                                 +.+..|..|..+++|++|+|++|.+.+..+..+..++ |+.|+|.+|.+.
T Consensus        68 -----------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           68 -----------LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -----------CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -----------cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                       2223344566677777777777776544444444444 777777777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.00  E-value=6.7e-11  Score=122.26  Aligned_cols=161  Identities=12%  Similarity=0.018  Sum_probs=98.3

Q ss_pred             cccEEEeecCCCc-ccCccccC-Cc-CcceeeccccccCc--cccccCCCCCCCcEEeeecCCCC-----------CcCC
Q 014835           10 HVYTLELVKVGIK-ELPSSIEC-LS-NLKKLYIVDCSMLE--SISSSIFKLKSLQSIEISNCPIF-----------ERFT   73 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~-L~-~L~~L~Ls~n~~~~--~lp~~l~~L~~L~~L~Ls~c~~l-----------~~lp   73 (417)
                      +|++|+|+++.++ ..+..++. ++ +|++|+|++|....  .++....++++|++|+|++|...           ..+|
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~  192 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT  192 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence            8999999999887 34444555 33 49999998876322  22333346889999999987521           1234


Q ss_pred             CCCccccCCC-----------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCC---ccCCcccCCCCC
Q 014835           74 EIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYF---MILPDELGNLEA  138 (417)
Q Consensus        74 ~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~---~~lp~~l~~l~~  138 (417)
                      .+..|+++++           ..+..+++ +.|++++|...+ +|..+..+++|++|+++.+...   ...+..+..+++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            5555555443           12234566 777777765433 5566666677777777643222   223344555666


Q ss_pred             CCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835          139 LETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       139 L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      |+.|+++++....+|..+..+++|++|+|++|.
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            666666665555566666666666666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.96  E-value=5e-11  Score=123.19  Aligned_cols=187  Identities=16%  Similarity=0.112  Sum_probs=98.7

Q ss_pred             cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC--------CCCC---------
Q 014835           10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC--------PIFE---------   70 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c--------~~l~---------   70 (417)
                      +|++|+|++|.++  .++..+..+++|+.|++++|-....++.....+++|++|++++|        +.++         
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~  369 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM  369 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence            7888888887766  23333567788888888876221222322234778888888442        2222         


Q ss_pred             cCCCCCccccCCC-------cccc-cccc-ceEEcC-----CCCCCCCCc------ccccCCCCCcEEecccccCCccCC
Q 014835           71 RFTEIPSCNIDGG-------IGIE-RLAS-CRLVLE-----DCSSLQSLP------SSLCMFKSLTSLEIIDCQYFMILP  130 (417)
Q Consensus        71 ~lp~l~~l~l~g~-------~~l~-~l~~-~~L~L~-----~n~~l~~lp------~~l~~l~~L~~L~L~~n~~~~~lp  130 (417)
                      .+|.+..+.+..+       ..+. .+++ +.|+++     +|..++..|      ..+..+++|+.|++++ .+....+
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            1333333322211       1121 3555 666666     333333222      1244566677777755 3333333


Q ss_pred             cccCC-CCCCCEEEeeccCCCC-cchhc-cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          131 DELGN-LEALETLIVDRTAMRE-VPESL-GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       131 ~~l~~-l~~L~~L~L~~n~l~~-lp~~l-~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      ..++. +++|+.|++++|.++. .+..+ ..+++|+.|+|++|.. ++.     .+...+..+ +|+.|++++|+++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDK-----ALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHH-----HHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHH-----HHHHHHHhCCCCCEEeeeCCCCC
Confidence            33333 6677777777777632 11222 4567777777777773 322     011122334 6777777777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=1.9e-09  Score=103.29  Aligned_cols=178  Identities=14%  Similarity=0.123  Sum_probs=126.0

Q ss_pred             C-cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeec-----------------CCCC
Q 014835            9 C-HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISN-----------------CPIF   69 (417)
Q Consensus         9 ~-~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~-----------------c~~l   69 (417)
                      + +|+.|+|.+ .++.|+.. |..+++|+.|++.+|.+...-+..|.++.++..+.+..                 |..+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            6 999999999 89999885 88999999999999876665566777777777666543                 1111


Q ss_pred             Cc---------C-----------CCCCccccCCC------ccc-ccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecc
Q 014835           70 ER---------F-----------TEIPSCNIDGG------IGI-ERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEII  121 (417)
Q Consensus        70 ~~---------l-----------p~l~~l~l~g~------~~l-~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~  121 (417)
                      +.         +           ..+..+.+.|.      ..+ ..+++ +.|+|++|.+...-+..|..+++|+.|++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            10         0           00000111111      011 12677 999999987655555678899999999999


Q ss_pred             cccCCccCCcccCCCCCCC-EEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCc-cccC-Ccceeec
Q 014835          122 DCQYFMILPDELGNLEALE-TLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRR  197 (417)
Q Consensus       122 ~n~~~~~lp~~l~~l~~L~-~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l  197 (417)
                      +| +...-+..|.++++|+ .|.+.+ .++.++ .++..+++|+.|+++.|. ++ .      ++.. +..+ +|+.++.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~-~------I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-IT-T------LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CC-E------ECTTTTCTTCCCCEEEC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cC-c------cchhhhcCCcchhhhcc
Confidence            97 5555566799999999 999988 787776 588999999999998888 54 2      5554 4455 8887753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=2.4e-09  Score=103.20  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=60.4

Q ss_pred             EEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCC-CCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCC
Q 014835           60 SIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLED-CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLE  137 (417)
Q Consensus        60 ~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~-n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~  137 (417)
                      .+++++++.+..+|          . +..+++ +.|+|++ |.+.+..|..|..+++|+.|+|++|.+.+..|..|++++
T Consensus        12 ~v~~~~~n~l~~ip----------~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDSLH----------H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTTTT----------T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCCccC----------C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            34666543566665          3 555566 6666664 544444445566666666666666666666666666666


Q ss_pred             CCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835          138 ALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       138 ~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      +|+.|+|++|.|+.+|..+.....|+.|+|.+|+
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence            6666666666666665543332236666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=4.8e-11  Score=123.32  Aligned_cols=58  Identities=12%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             cccEEEeecCCCc-ccCcccc-CCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCC
Q 014835           10 HVYTLELVKVGIK-ELPSSIE-CLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCP   67 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~-~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~   67 (417)
                      +|++|+|+++.++ ..+..+. .+++|++|+|++|...+.  ++..+.++++|++|+|++|.
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            5666666666655 2233333 466666666666643332  33333356666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.85  E-value=8.2e-11  Score=115.09  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=30.0

Q ss_pred             CCCCcEEecccccCCc----cCCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEccCCC
Q 014835          112 FKSLTSLEIIDCQYFM----ILPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       112 l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~n~  171 (417)
                      .++|++|+|++|.+..    .++..+..+++|++|+|++|.++.     ++..+...++|+.|+|++|.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            4455555555555432    123333445555555555555532     23344445555555555555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=1.2e-10  Score=113.86  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=111.6

Q ss_pred             cccEEEeecCCCcccC-----cccc-CCcCcceeeccccccCccccccC-CCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835           10 HVYTLELVKVGIKELP-----SSIE-CLSNLKKLYIVDCSMLESISSSI-FKLKSLQSIEISNCPIFERFTEIPSCNIDG   82 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp-----~~i~-~L~~L~~L~Ls~n~~~~~lp~~l-~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g   82 (417)
                      +|+.|+|++|.++...     ..+. ..++|++|+|++|.+...-...+ ..+++|++|+|++|.. +.... .  .+. 
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~-~--~L~-  147 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEAC-K--DLR-  147 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHH-H--HHH-
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHH-H--HHH-
Confidence            7899999999998432     2233 23799999999987655433333 2467899999999732 21100 0  000 


Q ss_pred             Cccc-ccccc-ceEEcCCCCCCC----CCcccccCCCCCcEEecccccCCc----cCCcccCCCCCCCEEEeeccCCCC-
Q 014835           83 GIGI-ERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSLEIIDCQYFM----ILPDELGNLEALETLIVDRTAMRE-  151 (417)
Q Consensus        83 ~~~l-~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~n~l~~-  151 (417)
                       ..+ ...+. +.|+|++|.+..    .++..+..+++|++|+|++|.+..    .++..+...++|++|+|++|.++. 
T Consensus       148 -~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          148 -DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             -HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             -HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence             111 23466 899999997643    355566788999999999999754    235567778899999999999964 


Q ss_pred             ----cchhccCCCCCcEEEccCCCCChh
Q 014835          152 ----VPESLGQLSSLKILVLSNIKRLPE  175 (417)
Q Consensus       152 ----lp~~l~~L~~L~~L~L~~n~~l~~  175 (417)
                          +...+...++|++|+|++|. +++
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~-i~~  253 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNE-LSS  253 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence                44456678999999999998 553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=5.8e-08  Score=95.73  Aligned_cols=171  Identities=9%  Similarity=0.111  Sum_probs=108.6

Q ss_pred             cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      +|+.+.|.. .++.|+.. +..+++|+.++|..|++ ..+|.......+|+.+.|..+  ++.++.         .++.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~~--l~~I~~---------~aF~~  224 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPVT--LKEIGS---------QAFLK  224 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCTT--CCEECT---------TTTTT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc-eEechhhEeecccCEEEeCCc--hheehh---------hHhhC
Confidence            788888885 77777764 78889999999987544 445544334688888888743  555554         56667


Q ss_pred             ccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCC-----Ccc-hhccCCC
Q 014835           89 LAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMR-----EVP-ESLGQLS  160 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~-----~lp-~~l~~L~  160 (417)
                      +++ +.+.+..+  +..++ .+|.. .+|+.+.+.. .+...-...|.++++|+.+.+.++.+.     .++ ..+..++
T Consensus       225 ~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          225 TSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             CTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             CCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            777 77777664  33333 33444 6778877743 334444556777788888888776654     344 3667777


Q ss_pred             CCcEEEccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc-cCcC
Q 014835          161 SLKILVLSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      +|+.+.|.++  ++ .      ++.. +..+ .|+.+.+..+ ++ ++..
T Consensus       301 ~L~~l~l~~~--i~-~------I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          301 KLARFEIPES--IR-I------LGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             TCCEECCCTT--CC-E------ECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             cCCeEEeCCc--eE-E------EhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            8888877743  33 2      4433 3344 7777776443 33 4444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=5.2e-08  Score=94.65  Aligned_cols=178  Identities=12%  Similarity=0.090  Sum_probs=109.6

Q ss_pred             cccEEEeecCCCc---------ccCccccCCcCcceeecccccc---------CccccccCCCCCCCcEEeeecCCCCCc
Q 014835           10 HVYTLELVKVGIK---------ELPSSIECLSNLKKLYIVDCSM---------LESISSSIFKLKSLQSIEISNCPIFER   71 (417)
Q Consensus        10 ~L~~L~Ls~n~l~---------~lp~~i~~L~~L~~L~Ls~n~~---------~~~lp~~l~~L~~L~~L~Ls~c~~l~~   71 (417)
                      .++.|.+......         .+..++..+++|+.|.+.....         .+.++..+..+++|+.|+|++|..+ .
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence            4677777653332         2334466788999998865322         1134444567899999999986322 2


Q ss_pred             CCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccccc--CCCCCcEEecccc--cCCc-----cCCccc--CCCCCC
Q 014835           72 FTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSSLC--MFKSLTSLEIIDC--QYFM-----ILPDEL--GNLEAL  139 (417)
Q Consensus        72 lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~--~l~~L~~L~L~~n--~~~~-----~lp~~l--~~l~~L  139 (417)
                      ++           .+ .+++ +.|+|..|.+.......+.  .+++|++|+|+.+  ...+     .+...+  ..+++|
T Consensus       187 l~-----------~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L  254 (362)
T 2ra8_A          187 IG-----------KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL  254 (362)
T ss_dssp             CC-----------SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC
T ss_pred             ec-----------cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc
Confidence            22           12 2567 8888887765433223333  6899999998632  1111     111222  357899


Q ss_pred             CEEEeeccCCCC-cchhc---cCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          140 ETLIVDRTAMRE-VPESL---GQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       140 ~~L~L~~n~l~~-lp~~l---~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +.|+|.+|.++. .+..+   ..+++|++|+|+.|. +.+....  .++..+..+ +|+.|++++|.++
T Consensus       255 r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGAR--LLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHH--HHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHH--HHHhhcccCCcceEEECCCCcCC
Confidence            999999998842 22222   357899999999887 6542000  033344556 8999999998865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.46  E-value=9.1e-06  Score=79.94  Aligned_cols=180  Identities=8%  Similarity=0.038  Sum_probs=124.6

Q ss_pred             cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      +|+.+.|..+ ++.|+.. |.+ .+|+.+.|.. ++...-+..|.++++|+.++++. +.+..++.         ..+. 
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~---------~aF~-  201 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPA---------STFV-  201 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECT---------TTTT-
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEech---------hhEe-
Confidence            8999998865 8888875 555 5799999986 44444456788999999999987 46666664         3444 


Q ss_pred             ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEE
Q 014835           89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILV  166 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~  166 (417)
                      ..+ +.+.+..+ +...-..+|.++++|+.+.+..+ +...-...|.+ .+|+.+.+ .+.+..++ ..+..+++|+.+.
T Consensus       202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred             ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence            356 88888754 33333457888999999999874 33333445666 79999999 45677775 4788999999999


Q ss_pred             ccCCCCChhhhhcccCCCC-ccccC-CcceeecCCCccc-cCcCcccc
Q 014835          167 LSNIKRLPEYLQLHLQLPE-NGLEG-IPEYLRRSPRKLT-LDPNELSE  211 (417)
Q Consensus       167 L~~n~~l~~~l~~~l~lp~-~l~~l-~L~~L~l~~n~L~-lp~~~L~~  211 (417)
                      +.++.......   ..++. .+..+ +|+.+.+.. .++ ++...+..
T Consensus       278 l~~~~~~~~~~---~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~  321 (401)
T 4fdw_A          278 TYGSTFNDDPE---AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG  321 (401)
T ss_dssp             EESSCCCCCTT---CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred             eCCccccCCcc---cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence            98876320000   00333 44455 899998884 355 66554433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.41  E-value=9.3e-08  Score=92.85  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=100.9

Q ss_pred             cccEEEeecCCCc----------ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835           10 HVYTLELVKVGIK----------ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus        10 ~L~~L~Ls~n~l~----------~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      +|+.|.+......          .++..+..+++|+.|+|++|... .++. + .+++|++|+|..|..-...       
T Consensus       140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~-------  209 (362)
T 2ra8_A          140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV-------  209 (362)
T ss_dssp             TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH-------
T ss_pred             hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH-------
Confidence            8999999764332          24444677899999999987433 3444 4 4899999999986421100       


Q ss_pred             cCCCccc--ccccc-ceEEcCCC--CC-----CCCCcccc--cCCCCCcEEecccccCCccCCccc---CCCCCCCEEEe
Q 014835           80 IDGGIGI--ERLAS-CRLVLEDC--SS-----LQSLPSSL--CMFKSLTSLEIIDCQYFMILPDEL---GNLEALETLIV  144 (417)
Q Consensus        80 l~g~~~l--~~l~~-~~L~L~~n--~~-----l~~lp~~l--~~l~~L~~L~L~~n~~~~~lp~~l---~~l~~L~~L~L  144 (417)
                         ...+  ..+++ +.|+|+.+  ..     ...+...+  ..+++|++|+|.+|.+....+..+   ..+++|++|+|
T Consensus       210 ---l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          210 ---VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             ---HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred             ---HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence               0122  25677 77877531  11     11122222  257999999999998764332222   35889999999


Q ss_pred             eccCCCC-----cchhccCCCCCcEEEccCCCCChhh
Q 014835          145 DRTAMRE-----VPESLGQLSSLKILVLSNIKRLPEY  176 (417)
Q Consensus       145 ~~n~l~~-----lp~~l~~L~~L~~L~L~~n~~l~~~  176 (417)
                      +.|.++.     ++..+..+++|+.|+|++|. +++.
T Consensus       287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~  322 (362)
T 2ra8_A          287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDE  322 (362)
T ss_dssp             CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHH
T ss_pred             CCCCCChHHHHHHHhhcccCCcceEEECCCCc-CCHH
Confidence            9999954     45555678999999999998 5533

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=1.6e-06  Score=75.82  Aligned_cols=63  Identities=16%  Similarity=0.113  Sum_probs=36.3

Q ss_pred             ccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEe--eccCCCC-----cchhccCCCCCcEEEccCCC
Q 014835          109 LCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIV--DRTAMRE-----VPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       109 l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~L~~L~~L~L~~n~  171 (417)
                      +...++|++|+|++|.+...    +...+...++|++|+|  ++|.++.     +...+...++|+.|+|++|.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            33445666666666665432    3344555566677777  5666642     33344555667777776665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=9.8e-06  Score=69.90  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             ceEEcCCCCCCCC-CcccccCCCCCcEEecccccCC
Q 014835           92 CRLVLEDCSSLQS-LPSSLCMFKSLTSLEIIDCQYF  126 (417)
Q Consensus        92 ~~L~L~~n~~l~~-lp~~l~~l~~L~~L~L~~n~~~  126 (417)
                      +.|+|++|..++. --..+..+++|++|++++|...
T Consensus       117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred             CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            4455555543321 1123556788888888888643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.80  E-value=1e-05  Score=69.76  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             cCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCCCCCcccccC
Q 014835           32 SNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCM  111 (417)
Q Consensus        32 ~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~  111 (417)
                      .+|+.|+|++|.+...--..+.++++|++|+|++|..++.-                                --..+..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--------------------------------gL~~L~~  108 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--------------------------------CLERLSQ  108 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--------------------------------HHHHHHT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--------------------------------HHHHHHh
Confidence            36777777777644433334567777777777777443321                                0112233


Q ss_pred             C----CCCcEEeccccc-CCccCCcccCCCCCCCEEEeeccC-CCC
Q 014835          112 F----KSLTSLEIIDCQ-YFMILPDELGNLEALETLIVDRTA-MRE  151 (417)
Q Consensus       112 l----~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~n~-l~~  151 (417)
                      +    ++|++|+|++|. ++..--..+..+++|+.|++++|. ++.
T Consensus       109 ~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            2    368999999986 444333446678899999998885 443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.77  E-value=4.7e-06  Score=72.80  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             CcccccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEc--cCCCCC
Q 014835          105 LPSSLCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVL--SNIKRL  173 (417)
Q Consensus       105 lp~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L--~~n~~l  173 (417)
                      +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|+.     +...+...++|++|+|  ++|. +
T Consensus        57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i  135 (185)
T 1io0_A           57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-L  135 (185)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-C
T ss_pred             HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-C
Confidence            344556678899999999987542    34445567889999999999964     5567788889999999  7788 5


Q ss_pred             hhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          174 PEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       174 ~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      .+....  .+...+... .|+.|++++|.+.
T Consensus       136 ~~~g~~--~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          136 GNNVEM--EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHH--HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHH--HHHHHHHhCCCcCEEeccCCCCC
Confidence            432100  022344455 8999999999865

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.68  E-value=2.3e-05  Score=72.38  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             CCCCCcEEecccccCCc--cCCcccCCCCCCCEEEeeccCCCCcchhccCCC--CCcEEEccCCC
Q 014835          111 MFKSLTSLEIIDCQYFM--ILPDELGNLEALETLIVDRTAMREVPESLGQLS--SLKILVLSNIK  171 (417)
Q Consensus       111 ~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~--~L~~L~L~~n~  171 (417)
                      ++++|+.|+|++|.+.+  .+|..+..+++|+.|+|++|.+..+. .+..+.  +|+.|+|++|+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence            46677777777777665  44555566777777777777776552 233333  77777777777

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.49  E-value=5.2e-05  Score=70.06  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             cccc-ceEEcCCCCCCC--CCcccccCCCCCcEEecccccCCcc-CCcccCCCCCCCEEEeeccCCC-Ccch-------h
Q 014835           88 RLAS-CRLVLEDCSSLQ--SLPSSLCMFKSLTSLEIIDCQYFMI-LPDELGNLEALETLIVDRTAMR-EVPE-------S  155 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~-------~  155 (417)
                      +++. +.|+|++|.+.+  .+|..+..+++|+.|+|++|.+.+. -...+..+ +|++|+|++|.+. .+|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            4566 778888887766  5567777899999999999997764 11223334 9999999999994 4542       3


Q ss_pred             ccCCCCCcEEEc
Q 014835          156 LGQLSSLKILVL  167 (417)
Q Consensus       156 l~~L~~L~~L~L  167 (417)
                      +..+++|+.||-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            677899998873

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.56  E-value=0.021  Score=54.89  Aligned_cols=147  Identities=10%  Similarity=0.010  Sum_probs=84.6

Q ss_pred             CCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCCccc
Q 014835           30 CLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSLPSS  108 (417)
Q Consensus        30 ~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~lp~~  108 (417)
                      ....+..+.+.. .........+....+|+.+.+..+  +..++.         ..+..... +.+.+..+ ....-...
T Consensus       192 ~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~---------~~f~~~~~L~~i~lp~~-v~~I~~~a  258 (379)
T 4h09_A          192 AAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITSG--VTTLGD---------GAFYGMKALDEIAIPKN-VTSIGSFL  258 (379)
T ss_dssp             TTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCTT--CCEECT---------TTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred             cccccccccccc-ceeEEeecccccccccceeeeccc--eeEEcc---------ccccCCccceEEEcCCC-ccEeCccc
Confidence            344455554443 222222334556667777766542  232222         34445555 55666543 22222345


Q ss_pred             ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCCCc-
Q 014835          109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLPEN-  186 (417)
Q Consensus       109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~-  186 (417)
                      +..+.+|+.+.+..+ +...-...+..+++|+.+.+.++.+..++. .+..+.+|+.+.|..+  ++ .      +... 
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~-~------I~~~a  328 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LK-T------IQVYA  328 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC-E------ECTTT
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--cc-E------EHHHH
Confidence            667788888888653 333333467788889999988888877764 6788888999888654  33 2      4433 


Q ss_pred             cccC-CcceeecCC
Q 014835          187 GLEG-IPEYLRRSP  199 (417)
Q Consensus       187 l~~l-~L~~L~l~~  199 (417)
                      +... +|+.+.+..
T Consensus       329 F~~C~~L~~i~ip~  342 (379)
T 4h09_A          329 FKNCKALSTISYPK  342 (379)
T ss_dssp             TTTCTTCCCCCCCT
T ss_pred             hhCCCCCCEEEECC
Confidence            4444 777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.48  E-value=0.02  Score=55.54  Aligned_cols=143  Identities=15%  Similarity=0.100  Sum_probs=95.9

Q ss_pred             cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      .|+.+.+.. .++.+... +..+..|+.+.+..+ ....-...+.....|+.+.+...    .++.         ..+..
T Consensus       231 ~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~----~i~~---------~~F~~  295 (394)
T 4fs7_A          231 GVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV----IVPE---------KTFYG  295 (394)
T ss_dssp             CCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS----EECT---------TTTTT
T ss_pred             CCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCce----eecc---------ccccc
Confidence            778887764 44555553 677889999998763 34444456777888888877652    1222         34555


Q ss_pred             ccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEE
Q 014835           89 LAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILV  166 (417)
Q Consensus        89 l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~  166 (417)
                      ..+ +.+.+..+ ....-..++.++++|+.+++..+ +...-...|.++.+|+.+.+..+ +..++ .++..+++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            566 66766553 22222446778889999998653 33334567888999999998766 66665 3788899999998


Q ss_pred             ccCC
Q 014835          167 LSNI  170 (417)
Q Consensus       167 L~~n  170 (417)
                      +..+
T Consensus       373 lp~~  376 (394)
T 4fs7_A          373 LPKR  376 (394)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.38  E-value=0.028  Score=54.45  Aligned_cols=163  Identities=16%  Similarity=0.103  Sum_probs=103.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .|+.+.+..+ +..+.........|+.+.+.. .....-...+.++..|+.+.+..+  ...++.         ..+...
T Consensus       209 ~L~~i~~~~~-~~~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~---------~~F~~~  275 (394)
T 4fs7_A          209 LLENMEFPNS-LYYLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGG---------SLFYNC  275 (394)
T ss_dssp             TCCBCCCCTT-CCEECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECS---------CTTTTC
T ss_pred             ccceeecCCC-ceEeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCC--cceeec---------cccccc
Confidence            5666655543 233444445567888888865 333333345778899999998763  222222         344455


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L  167 (417)
                      .. ..+.+....+   ....+..+.+|+.+.+..+ +...-...|.++.+|+.+.+..+ ++.++ .++..+++|+.+.+
T Consensus       276 ~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          276 SGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             TTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECC
T ss_pred             cccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEE
Confidence            55 5555543321   1235668899999999764 34444566889999999999654 77675 47889999999999


Q ss_pred             cCCCCChhhhhcccCCCCc-cccC-CcceeecCC
Q 014835          168 SNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSP  199 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~  199 (417)
                      ..+  ++ .      +... +... +|+.+++..
T Consensus       351 p~~--l~-~------I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          351 PLS--LR-K------IGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTT--CC-E------ECTTTBTTCTTCCEEEEEG
T ss_pred             Ccc--cc-E------ehHHHhhCCCCCCEEEECC
Confidence            765  33 2      4443 4455 899888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.16  E-value=0.014  Score=56.53  Aligned_cols=127  Identities=15%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCC-cccccCCCCCcEEecccccCCc
Q 014835           50 SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSL-PSSLCMFKSLTSLEIIDCQYFM  127 (417)
Q Consensus        50 ~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~l-p~~l~~l~~L~~L~L~~n~~~~  127 (417)
                      .+|.++.+|+.+.+...  +..++.         ..+.+.+. +.+.+...  +..+ ...|.++.+|+.+.|..+ +..
T Consensus       259 ~aF~~c~~L~~i~lp~~--~~~I~~---------~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~  324 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS--VVSIGT---------GAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQ  324 (394)
T ss_dssp             TTTTTCSSCCEEECCTT--CCEECT---------TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred             ceeeecccccEEecccc--cceecC---------cccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccE
Confidence            34666777777776542  222222         34555555 66666432  2333 345777889999998754 333


Q ss_pred             cCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCc
Q 014835          128 ILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       128 ~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~  201 (417)
                      .-...|.++.+|+.+.+..+ +..+. .++.++++|+.+++.++. ..        + ..+... .|+.+.+..+.
T Consensus       325 I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~-~~--------~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          325 ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR-SQ--------W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH-HH--------H-HTCBCCCCC---------
T ss_pred             ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce-ee--------h-hhhhccCCCCEEEeCCCC
Confidence            34456888999999999654 66665 478889999999998765 22        1 133444 67766665544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.16  E-value=0.0053  Score=49.94  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=43.6

Q ss_pred             cEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCC
Q 014835           12 YTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPI   68 (417)
Q Consensus        12 ~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~   68 (417)
                      ..++.++++++  .+|..+.  .+|++|+|++|.+...-+..|..+++|++|+|++|..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            57888999998  9997553  4799999999776654455677899999999999743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.74  E-value=0.032  Score=54.04  Aligned_cols=135  Identities=16%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             CcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCC
Q 014835           21 IKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLED   98 (417)
Q Consensus        21 l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~   98 (417)
                      ++.+.. .+..+..|+.+.+.. .....-...+.++++|+.+.+..  .+..++.         ..+.++.+ +.+.+..
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~---------~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS--RITELPE---------SVFAGCISLKSIDIPE  320 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT---------TTTTTCTTCCEEECCT
T ss_pred             ceEcccceeeecccccEEeccc-ccceecCcccccccccccccCCC--cccccCc---------eeecCCCCcCEEEeCC
Confidence            334433 367788899998876 33333345677889999998863  4555554         56777778 8888875


Q ss_pred             CCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835           99 CSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus        99 n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      + +...-..+|.++.+|+.+.+..+ +...-...|.++++|+.+++.++... + ..+...++|+.+.+..+.
T Consensus       321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred             c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence            4 22233457888999999999654 33333467899999999999876432 1 345667788888876554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.49  E-value=0.011  Score=48.13  Aligned_cols=44  Identities=16%  Similarity=0.269  Sum_probs=36.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccC
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSML   45 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~   45 (417)
                      ++|.-+..+|+.|+|++|.|+.||.. +..+++|++|+|++|...
T Consensus        24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           24 SLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            56765555899999999999999986 688999999999997543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.34  E-value=0.1  Score=50.04  Aligned_cols=129  Identities=12%  Similarity=0.143  Sum_probs=88.7

Q ss_pred             cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc-ceEEcCCCCCCCCC
Q 014835           27 SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS-CRLVLEDCSSLQSL  105 (417)
Q Consensus        27 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~-~~L~L~~n~~l~~l  105 (417)
                      .+....+|+.+.+.. .....-...+.++.+|+.+.+..+  ++.++.         ..+.+... +.+.+..+  +..+
T Consensus       212 ~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~---------~aF~~~~~l~~i~l~~~--i~~i  277 (379)
T 4h09_A          212 GFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGS---------FLLQNCTALKTLNFYAK--VKTV  277 (379)
T ss_dssp             TTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECT---------TTTTTCTTCCEEEECCC--CSEE
T ss_pred             ccccccccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCc---------cccceeehhcccccccc--ceec
Confidence            456677888888765 333333455677888888888653  444443         45556666 66766543  3333


Q ss_pred             -cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCC
Q 014835          106 -PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNI  170 (417)
Q Consensus       106 -p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n  170 (417)
                       ...+..+++|+.+.+.++.+...-...|.++.+|+.+.|..+ ++.|.. ++.++++|+.+.+..+
T Consensus       278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence             345778899999999887665555677889999999999654 666654 6888999999888654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.31  E-value=0.009  Score=52.22  Aligned_cols=13  Identities=23%  Similarity=0.151  Sum_probs=6.3

Q ss_pred             CCCcEEecccccC
Q 014835          113 KSLTSLEIIDCQY  125 (417)
Q Consensus       113 ~~L~~L~L~~n~~  125 (417)
                      +.|++|+|++|.+
T Consensus        98 ~tL~~L~L~~N~I  110 (197)
T 1pgv_A           98 PSLRVLNVESNFL  110 (197)
T ss_dssp             SSCCEEECCSSBC
T ss_pred             CccCeEecCCCcC
Confidence            4455555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.01  E-value=0.016  Score=50.57  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=60.3

Q ss_pred             cccccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEccCCCC--Ch
Q 014835          106 PSSLCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVLSNIKR--LP  174 (417)
Q Consensus       106 p~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~n~~--l~  174 (417)
                      -..+..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|+.|.|+.     +-..+..-+.|+.|+|++|..  +.
T Consensus        63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig  142 (197)
T 1pgv_A           63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG  142 (197)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence            34455667899999999886542    33344556789999999999952     344566667799999986531  33


Q ss_pred             hhhhcccCCCCccccC-CcceeecCCCcc
Q 014835          175 EYLQLHLQLPENGLEG-IPEYLRRSPRKL  202 (417)
Q Consensus       175 ~~l~~~l~lp~~l~~l-~L~~L~l~~n~L  202 (417)
                      +...  ..+...+..- .|+.|+++.|.+
T Consensus       143 ~~g~--~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          143 NQVE--MDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHH--HHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHH--HHHHHHHHhCCCcCeEeccCCCc
Confidence            2100  0022234444 788888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 38/268 (14%), Positives = 88/268 (32%), Gaps = 32/268 (11%)

Query: 4   PSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEI 63
           P    CH+  ++   +G++++P  +    +   L + +  + E        LK+L ++ +
Sbjct: 5   PFRCQCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 62

Query: 64  SNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSL-CMFKSLTSLEIID 122
            N  I       P            L     +    + L+ LP  +    + L   E   
Sbjct: 63  INNKI---SKISPGA-------FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 112

Query: 123 CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQ 182
            +    + + L  +  +E       +      +   +  L  + +++             
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD------------- 159

Query: 183 LPENGLEGIPEYLRRSPRKLTLDPNELSEIVKD---GWMKQSFDGNIGITKSMYFPGKEI 239
                +  IP+ L  S  +L LD N+++++      G    +  G    + S    G   
Sbjct: 160 ---TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 240 PKWFRYQSMGSSVNLKKRPADFLNNKIL 267
                 +   ++  L K P    ++K +
Sbjct: 217 NTPHLRELHLNNNKLVKVPGGLADHKYI 244

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 13/168 (7%)

Query: 3   FPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSI 61
            P         L+L    I E+     + L NL  L +++  + +    +   L  L+ +
Sbjct: 25  VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84

Query: 62  EISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEII 121
            +S      +  E+P         +    +        + ++    +      +  L   
Sbjct: 85  YLSKN----QLKELPEKMPKTLQELRVHENE------ITKVRKSVFNGLNQMIVVELGTN 134

Query: 122 DCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
             +   I       ++ L  + +  T +  +P+ L    SL  L L  
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 180

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 30/190 (15%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 3   FPSVTSCHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIE 62
            P     ++  L L    +K++ + +  L+NL  L + +  +       +  L  L  ++
Sbjct: 213 TPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269

Query: 63  ISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIID 122
           +    I       P   +     +E   +    +   S+L++L      F +++ +    
Sbjct: 270 LGANQISN---ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--- 323

Query: 123 CQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN--IKRLPEYLQL- 179
                     + +L  L+ L      + +V  SL  L+++  L   +  I  L     L 
Sbjct: 324 ---------PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLT 373

Query: 180 ---HLQLPEN 186
               L L + 
Sbjct: 374 RITQLGLNDQ 383

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 92  CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMRE 151
             L L      +    +    +        +     +  D          L + RT +  
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 152 VPES-LGQLSSLKILVLSNIKRLP 174
           +P   L  L  L+     N+K+LP
Sbjct: 216 LPSYGLENLKKLRARSTYNLKKLP 239

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 13/180 (7%)

Query: 3   FPSVTSCHVYTLELVKVGIKELP-SSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSI 61
            P         L L +  +     +++   + L +L +    + +        +     +
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84

Query: 62  EISNCPIFERFTEIPSCNIDGGIGIERLAS------------CRLVLEDCSSLQSLPSSL 109
             +         +         +   RL S              L L+        P  L
Sbjct: 85  SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 110 CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
                L  L + +     +    L  LE L+TL++   ++  +P+       L    L  
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 110 CMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
            + K+L  L++ + + +  LP  L  L+ L +L V    +       G L    +   +N
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 170 IKRL 173
            K L
Sbjct: 301 NKCL 304

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 7/162 (4%)

Query: 13  TLELVKVGIKELPSSIECLSNLKKLY-----IVDCSMLESISSSIFKLKSLQSIEISNCP 67
            +      IK +   I+ L N+ KL+     + D   L ++ +  +       ++  +  
Sbjct: 50  QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSL 108

Query: 68  IFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFM 127
              +  +  S   +G   I  L     +         +     + +      +      +
Sbjct: 109 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168

Query: 128 ILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSN 169
                L  L  L+ L + +  + ++  +L  L +L +L L +
Sbjct: 169 SDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.21
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.4
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=3.2e-20  Score=175.35  Aligned_cols=197  Identities=19%  Similarity=0.221  Sum_probs=153.8

Q ss_pred             cccEEEeecCCCc---ccCccccCCcCcceeeccc-cccCccccccCCCCCCCcEEeeecCCCCCcCC-------CCCcc
Q 014835           10 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVD-CSMLESISSSIFKLKSLQSIEISNCPIFERFT-------EIPSC   78 (417)
Q Consensus        10 ~L~~L~Ls~n~l~---~lp~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp-------~l~~l   78 (417)
                      +++.|+|++++++   .+|+++++|++|++|+|++ |++.+.+|..|++|++|++|+|++|...+..+       .+..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6899999998887   6899999999999999987 56778999999999999999999976433222       23334


Q ss_pred             ccCCC-------cccccccc-ceEEcCCCCCCCCCcccccCCCCC-cEEecccccCCc----------------------
Q 014835           79 NIDGG-------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSL-TSLEIIDCQYFM----------------------  127 (417)
Q Consensus        79 ~l~g~-------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L-~~L~L~~n~~~~----------------------  127 (417)
                      .++.+       ..+..++. +.+++++|.+.+.+|..+..+..+ +.+++++|++.+                      
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44443       46778888 888998888887888877777665 666666665443                      


Q ss_pred             -cCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc--
Q 014835          128 -ILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT--  203 (417)
Q Consensus       128 -~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~--  203 (417)
                       .+|..++.+++|+.|++++|.+...+..++.+++|+.|+|++|+ +++.      +|..+..+ .|+.|++++|+|+  
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~-l~g~------iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IYGT------LPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC-CEEC------CCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCe-eccc------CChHHhCCCCCCEEECcCCccccc
Confidence             34555667788999999999886656678889999999999998 6666      99999999 9999999999988  


Q ss_pred             cCcC-cccccc
Q 014835          204 LDPN-ELSEIV  213 (417)
Q Consensus       204 lp~~-~L~~l~  213 (417)
                      +|.. .++.+.
T Consensus       284 iP~~~~L~~L~  294 (313)
T d1ogqa_         284 IPQGGNLQRFD  294 (313)
T ss_dssp             CCCSTTGGGSC
T ss_pred             CCCcccCCCCC
Confidence            7753 344444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-19  Score=165.41  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=128.2

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|+-+..+|++|+|++|.|+.+|. .+..+++|++|+|++|.+ +.+|. ++.+++|++|+|++| .+..++       
T Consensus        24 ~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~-~~~l~~L~~L~Ls~N-~l~~~~-------   93 (266)
T d1p9ag_          24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSHN-QLQSLP-------   93 (266)
T ss_dssp             SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC-CSCCTTCCEEECCSS-CCSSCC-------
T ss_pred             eeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccc-ccccccccccccccc-cccccc-------
Confidence            4565444467778888887777765 377777788888877644 45554 567777888888775 344444       


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  158 (417)
                         ..+..+++ +.|++++|...+..+..+..+.++++|++++|.+....+..+..+++|+.|++++|+++.+|. .+..
T Consensus        94 ---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~  170 (266)
T d1p9ag_          94 ---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (266)
T ss_dssp             ---CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             ---cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccc
Confidence               35666777 788888877666666666777888888888877666656666777888888888888866653 4677


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +++|++|+|++|+ ++ .      +|..+..+ .|+.|++++|++.
T Consensus       171 l~~L~~L~Ls~N~-L~-~------lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         171 LENLDTLLLQENS-LY-T------IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTCCEEECCSSC-CC-C------CCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccceeecccCC-Cc-c------cChhHCCCCCCCEEEecCCCCC
Confidence            8888888888887 55 4      77777777 7888888877753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.2e-18  Score=161.84  Aligned_cols=197  Identities=17%  Similarity=0.227  Sum_probs=155.8

Q ss_pred             CCCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCC----
Q 014835            1 MNFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEI----   75 (417)
Q Consensus         1 ~~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l----   75 (417)
                      +++|.-+..++++|+|++|+|+++|+ +|.++++|++|++++|.+....|..|.++++|++|++++|+ ++.+|..    
T Consensus        23 ~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~  101 (305)
T d1xkua_          23 EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKT  101 (305)
T ss_dssp             CSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTT
T ss_pred             CccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchhhh
Confidence            35676444489999999999999997 58999999999999998888778889999999999999964 4444421    


Q ss_pred             -Cc------------------------cccCCC---------cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEec
Q 014835           76 -PS------------------------CNIDGG---------IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEI  120 (417)
Q Consensus        76 -~~------------------------l~l~g~---------~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L  120 (417)
                       ..                        +.+..+         ..+..+++ +.+++++|.+. .+|..  .+++|+.|++
T Consensus       102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l  178 (305)
T d1xkua_         102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHL  178 (305)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEEC
T ss_pred             hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEEC
Confidence             11                        111111         34556677 88888888654 45554  3689999999


Q ss_pred             ccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecC
Q 014835          121 IDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRS  198 (417)
Q Consensus       121 ~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~  198 (417)
                      ++|......+..+..++.++.|++++|.+..++ ..+..+++|++|+|++|+ ++ .      +|..+..+ .|+.|+++
T Consensus       179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~-~------lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LV-K------VPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CS-S------CCTTTTTCSSCCEEECC
T ss_pred             CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc-cc-c------cccccccccCCCEEECC
Confidence            999988888888999999999999999997764 577889999999999998 55 4      88888888 99999999


Q ss_pred             CCccc-cCcCcc
Q 014835          199 PRKLT-LDPNEL  209 (417)
Q Consensus       199 ~n~L~-lp~~~L  209 (417)
                      +|+|+ ++...+
T Consensus       251 ~N~i~~i~~~~f  262 (305)
T d1xkua_         251 NNNISAIGSNDF  262 (305)
T ss_dssp             SSCCCCCCTTSS
T ss_pred             CCccCccChhhc
Confidence            99988 766543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-18  Score=159.26  Aligned_cols=194  Identities=18%  Similarity=0.207  Sum_probs=147.4

Q ss_pred             CCCCcccCcccEEEeecCCCcccCc-cccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      ++|..+..++++|+|++|+|+++|. ++..+++|++|++++|.+....+..+..++.++.+....++.++.++.      
T Consensus        25 ~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~------   98 (284)
T d1ozna_          25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP------   98 (284)
T ss_dssp             SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT------
T ss_pred             ccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccc------
Confidence            4665444478899999999988886 488888999999988777666666677788888888877777776654      


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc-hhccC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP-ESLGQ  158 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~  158 (417)
                         ..+.++++ +.|++++|......+..+..+.+|+.+++++|.+.+..+..+..+++|+.|++++|.+..+| ..+..
T Consensus        99 ---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_          99 ---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ---hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence               56777888 88888888776655666777888888888888877666667788888888888888887665 46678


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCcccc
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNELSE  211 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~L~~  211 (417)
                      +++|+.+++++|. +.+.      .|..+..+ +|+.|++++|.+. +|+..+..
T Consensus       176 l~~L~~l~l~~N~-l~~i------~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         176 LHSLDRLLLHQNR-VAHV------HPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             CTTCCEEECCSSC-CCEE------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             ccccchhhhhhcc-cccc------ChhHhhhhhhccccccccccccccccccccc
Confidence            8888888888888 4434      56677777 8888888888877 66554433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-17  Score=151.94  Aligned_cols=176  Identities=16%  Similarity=0.142  Sum_probs=147.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      .+.+++.++++|++||+.+.  ++|++|+|++|.+.+..+..|.++++|++|+|++| .++.+|           .++.+
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~-----------~~~~l   76 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-----------VDGTL   76 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-----------CCSCC
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccc-----------ccccc
Confidence            56778999999999998775  58999999998776655577999999999999996 455554           34678


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL  167 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L  167 (417)
                      ++ +.|+|++|.+ ...+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.+..+|. .+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          77 PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             TTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccc-cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            88 9999999965 4567788899999999999999888778888999999999999999988875 5577999999999


Q ss_pred             cCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcC
Q 014835          168 SNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPN  207 (417)
Q Consensus       168 ~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~  207 (417)
                      ++|+ +++.      .+..+..+ +|+.|++++|.|+ +|..
T Consensus       156 ~~N~-l~~~------~~~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         156 ANNN-LTEL------PAGLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             TTSC-CSCC------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccc-cccc------CccccccccccceeecccCCCcccChh
Confidence            9998 5533      34446667 9999999999998 8775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=3.4e-18  Score=161.19  Aligned_cols=192  Identities=18%  Similarity=0.180  Sum_probs=145.2

Q ss_pred             CCCcccC--cccEEEeec-CCCc-ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcC------
Q 014835            3 FPSVTSC--HVYTLELVK-VGIK-ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERF------   72 (417)
Q Consensus         3 lP~~~~~--~L~~L~Ls~-n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~l------   72 (417)
                      +|+.++.  +|++|+|++ |+++ .+|++|++|++|++|+|++|++.+..|..+..+.+|+++++++|.....+      
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            5665554  999999987 7887 89999999999999999998877766666666666777766665432222      


Q ss_pred             -CCCCccccCCC--------------------------------ccccccccceEEcCCCCCCCCCcccccCCCCCcEEe
Q 014835           73 -TEIPSCNIDGG--------------------------------IGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLE  119 (417)
Q Consensus        73 -p~l~~l~l~g~--------------------------------~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~  119 (417)
                       +.+..+.++++                                ..+..+....+++..+...+.+|..+..+++|+.|+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             Ccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             22222333322                                122222224566666666667788888899999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEeeccCCC-CcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-Ccceeec
Q 014835          120 IIDCQYFMILPDELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRR  197 (417)
Q Consensus       120 L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l  197 (417)
                      +++|.+.+.+| .++.+++|+.|+|++|++. .+|..++++++|++|+|++|+ +++.      +|. +..+ +|+.+++
T Consensus       228 ~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~------iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGE------IPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             CCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEEE------CCC-STTGGGSCGGGT
T ss_pred             ccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc-cccc------CCC-cccCCCCCHHHh
Confidence            99999877665 5889999999999999995 899999999999999999998 7766      884 5677 9999999


Q ss_pred             CCCc-cc
Q 014835          198 SPRK-LT  203 (417)
Q Consensus       198 ~~n~-L~  203 (417)
                      ++|+ +.
T Consensus       299 ~~N~~l~  305 (313)
T d1ogqa_         299 ANNKCLC  305 (313)
T ss_dssp             CSSSEEE
T ss_pred             CCCcccc
Confidence            9998 55

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.6e-16  Score=146.04  Aligned_cols=181  Identities=19%  Similarity=0.240  Sum_probs=148.3

Q ss_pred             cccC-cccEEEeecCCCcccCcc-ccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCCCcCCCCCccccCC
Q 014835            6 VTSC-HVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDG   82 (417)
Q Consensus         6 ~~~~-~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g   82 (417)
                      +.+. +|++|++++|.+..++.. +..+..++.+....++.+..+ |..+.++++|++|++++|.. ..++.        
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~--------  122 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGP--------  122 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCT--------
T ss_pred             hhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccc-ccccc--------
Confidence            4445 899999999999987775 677899999988766666655 56788999999999999653 33332        


Q ss_pred             Ccccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCc-chhccCCC
Q 014835           83 GIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREV-PESLGQLS  160 (417)
Q Consensus        83 ~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~  160 (417)
                       ..+...++ +.+++++|.+.+..+..+..+++|+.|++++|.+....+..+.++++|+.|++++|.+..+ |..+..++
T Consensus       123 -~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         123 -GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             -TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             -cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence             45666777 9999999987766667788899999999999998887788899999999999999999665 67899999


Q ss_pred             CCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          161 SLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       161 ~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +|++|++++|. +.+.      .+..+..+ .|+.|++++|++.
T Consensus       202 ~L~~L~l~~N~-i~~~------~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         202 RLMTLYLFANN-LSAL------PTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSSC-CSCC------CHHHHTTCTTCCEEECCSSCEE
T ss_pred             hcccccccccc-cccc------cccccccccccCEEEecCCCCC
Confidence            99999999999 5523      34456677 9999999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.9e-15  Score=134.21  Aligned_cols=165  Identities=19%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|+.|++.+++|++++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|. ++.++           .+..+
T Consensus        42 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~-~~-l~~l~~l~~l~~~~n~-~~~i~-----------~l~~l  106 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNP-LKNVS-----------AIAGL  106 (227)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCC-CSCCG-----------GGTTC
T ss_pred             CcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecc-cc-cccccccccccccccc-ccccc-----------ccccc
Confidence            8999999999999995 599999999999999876654 33 7899999999999863 33332           34455


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      +. +.+.+++|.....  ..+...+.+..+.++.+.+....  .+..+++|+.|++++|.+...+. ++.+++|+.|+|+
T Consensus       107 ~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD  181 (227)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             cccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccchh-hcccccceecccC
Confidence            55 5666665544332  12334555555555555433221  23445555666665555544432 5555556666665


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCCCccc
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~  203 (417)
                      +|+ ++ .      ++ .+..+ +|+.|++++|+++
T Consensus       182 ~n~-l~-~------l~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         182 DNK-IS-D------IS-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             SSC-CC-C------CG-GGGGCTTCCEEECTTSCCC
T ss_pred             CCc-cC-C------Ch-hhcCCCCCCEEECcCCcCC
Confidence            554 33 1      32 24444 5566666665555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=6e-15  Score=137.95  Aligned_cols=191  Identities=16%  Similarity=0.175  Sum_probs=134.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCc-------CCCCCccccCC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFER-------FTEIPSCNIDG   82 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~-------lp~l~~l~l~g   82 (417)
                      ..+.++=++++++++|..+.  ++|++|+|++|++....+.+|.++++|++|++++|.....       ++.+..+.+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            67888888899999999774  6899999999765444345789999999999999765432       23334455555


Q ss_pred             C--ccc--ccccc-ceEEcCCCCCCC--------------------------CCcccccCCCCCcEEecccccCCccCCc
Q 014835           83 G--IGI--ERLAS-CRLVLEDCSSLQ--------------------------SLPSSLCMFKSLTSLEIIDCQYFMILPD  131 (417)
Q Consensus        83 ~--~~l--~~l~~-~~L~L~~n~~l~--------------------------~lp~~l~~l~~L~~L~L~~n~~~~~lp~  131 (417)
                      +  ..+  ..... ..|.+..|.+..                          ..+..+..+++|+.+++++|.+. .+|.
T Consensus        89 n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             CccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            4  111  11112 344444433221                          11234566789999999999855 3554


Q ss_pred             ccCCCCCCCEEEeeccCCC-CcchhccCCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCCccc-cCcCc
Q 014835          132 ELGNLEALETLIVDRTAMR-EVPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPRKLT-LDPNE  208 (417)
Q Consensus       132 ~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n~L~-lp~~~  208 (417)
                      .+  +++|+.|++++|.+. ..+..+..++.++.|++++|. +.+.      .+..+..+ +|++|++++|.|+ +|.. 
T Consensus       168 ~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~------~~~~~~~l~~L~~L~L~~N~L~~lp~~-  237 (305)
T d1xkua_         168 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV------DNGSLANTPHLRELHLNNNKLVKVPGG-  237 (305)
T ss_dssp             SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEE------CTTTGGGSTTCCEEECCSSCCSSCCTT-
T ss_pred             cc--CCccCEEECCCCcCCCCChhHhhcccccccccccccc-cccc------ccccccccccceeeecccccccccccc-
Confidence            43  689999999999985 456788999999999999998 5534      45566777 9999999999988 8763 


Q ss_pred             ccccc
Q 014835          209 LSEIV  213 (417)
Q Consensus       209 L~~l~  213 (417)
                      +..+.
T Consensus       238 l~~l~  242 (305)
T d1xkua_         238 LADHK  242 (305)
T ss_dssp             TTTCS
T ss_pred             ccccc
Confidence            44333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1e-14  Score=128.07  Aligned_cols=144  Identities=22%  Similarity=0.325  Sum_probs=96.6

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|++|+++++.++.++. +..+++|++|++++|.+.+ ++. ++++++|++|++++|. +..+           ..+..+
T Consensus        41 ~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~-~~~~-----------~~l~~l  105 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQ-IADI-----------TPLANL  105 (199)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCC-----------GGGTTC
T ss_pred             CCCEEECCCCCCCCccc-cccCCCcCcCccccccccC-ccc-ccCCcccccccccccc-cccc-----------cccccc
Confidence            67788888888877753 7778888888888875443 443 7778888888888753 2322           235566


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      +. +.|++++|.....  ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++.+|.+..++. ++.+++|++|+++
T Consensus       106 ~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls  180 (199)
T d2omxa2         106 TNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDIS  180 (199)
T ss_dssp             TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             cccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCcc-ccCCCCCCEEECC
Confidence            66 7777776655432  235567777777777776432 32 46667777777777777766653 6677777777777


Q ss_pred             CCCCCh
Q 014835          169 NIKRLP  174 (417)
Q Consensus       169 ~n~~l~  174 (417)
                      +|+ ++
T Consensus       181 ~N~-i~  185 (199)
T d2omxa2         181 SNK-VS  185 (199)
T ss_dssp             SSC-CC
T ss_pred             CCC-CC
Confidence            776 44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.2e-14  Score=139.66  Aligned_cols=61  Identities=11%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             CCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecC
Q 014835            3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNC   66 (417)
Q Consensus         3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c   66 (417)
                      ++.+... +|++|+|++|+|+.+|+ ++++++|++|++++|.+.+ ++. ++++++|+.|+++++
T Consensus        59 l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~-i~~-l~~l~~L~~L~~~~~  120 (384)
T d2omza2          59 IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNN  120 (384)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred             ccccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccc-ccc-ccccccccccccccc
Confidence            3333344 78888888888888875 8888888888888876554 443 677888888887764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=131.02  Aligned_cols=196  Identities=16%  Similarity=0.169  Sum_probs=127.2

Q ss_pred             CCCCcccCcccEEEeecCCCcccCcc-ccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccc
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCN   79 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~   79 (417)
                      ++|+-+..++++|+|++|.|+.+|.. |.++++|++|+|++|.+...+| ..+.+++++++|.+..++.+..++.     
T Consensus        22 ~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-----   96 (242)
T d1xwdc1          22 EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----   96 (242)
T ss_dssp             SCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-----
T ss_pred             CcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-----
Confidence            45543323677888888777777764 6777788888887776666554 3456677777777776665555543     


Q ss_pred             cCCCcccccccc-ceEEcCCCCCCCCCc-ccccCCCCCcEEecccccCCccCCcccCCCC-CCCEEEeeccCCCCcchhc
Q 014835           80 IDGGIGIERLAS-CRLVLEDCSSLQSLP-SSLCMFKSLTSLEIIDCQYFMILPDELGNLE-ALETLIVDRTAMREVPESL  156 (417)
Q Consensus        80 l~g~~~l~~l~~-~~L~L~~n~~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~l  156 (417)
                          ..+..+++ +.+++++|.+...-+ ..+..+..+..+...++.+...-+..+..++ .++.|++++|.++.++...
T Consensus        97 ----~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1          97 ----EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             ----TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT
T ss_pred             ----ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence                45677778 888888876543222 1223344555555555554444444555543 7888888888888887766


Q ss_pred             cCCCCCcEEE-ccCCCCChhhhhcccCCCCc-cccC-CcceeecCCCccc-cCcCccccccc
Q 014835          157 GQLSSLKILV-LSNIKRLPEYLQLHLQLPEN-GLEG-IPEYLRRSPRKLT-LDPNELSEIVK  214 (417)
Q Consensus       157 ~~L~~L~~L~-L~~n~~l~~~l~~~l~lp~~-l~~l-~L~~L~l~~n~L~-lp~~~L~~l~~  214 (417)
                      ....+++.+. +++|. ++ .      +|.. +..+ +|+.|++++|+++ +|+..++.+..
T Consensus       173 ~~~~~l~~~~~l~~n~-l~-~------l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         173 FNGTQLDELNLSDNNN-LE-E------LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             TTTCCEEEEECTTCTT-CC-C------CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             ccchhhhccccccccc-cc-c------ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence            6667766665 45554 55 3      6655 4556 9999999999988 88776666553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=7.5e-15  Score=130.09  Aligned_cols=161  Identities=20%  Similarity=0.228  Sum_probs=123.4

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|+.|+++++.++.++. +..+++|++|+|++|.+.+ ++. ++.+++|++|++++| .++.+|           .+..+
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n-~i~~l~-----------~l~~l  111 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDEN-KVKDLS-----------SLKDL  111 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCGG-----------GGTTC
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccC-ccc-cccCccccccccccc-cccccc-----------ccccc
Confidence            78899999999988874 8889999999999976554 554 678999999999986 344443           46677


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEcc
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLS  168 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~  168 (417)
                      ++ +.|++++|.... + ..+..++.|+.+++++|.+..  +..+..+++|+.+++++|.+..++. +..+++|+.|+|+
T Consensus       112 ~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS  186 (210)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             ccccccccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccccc-ccCCCCCCEEECC
Confidence            78 888888886543 3 356778888999988887654  2346678888999999988887764 7888899999998


Q ss_pred             CCCCChhhhhcccCCCCccccC-CcceeecCC
Q 014835          169 NIKRLPEYLQLHLQLPENGLEG-IPEYLRRSP  199 (417)
Q Consensus       169 ~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~  199 (417)
                      +|. ++ .      +| .+..+ +|+.|++++
T Consensus       187 ~N~-i~-~------l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         187 KNH-IS-D------LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSC-CC-B------CG-GGTTCTTCSEEEEEE
T ss_pred             CCC-CC-C------Ch-hhcCCCCCCEEEccC
Confidence            887 55 3      55 56677 888888753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.3e-14  Score=128.56  Aligned_cols=148  Identities=22%  Similarity=0.305  Sum_probs=122.0

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      .++.+... +|++|+|++|.++.+++ ++.+++|++|++++|.+ ..+|. +.++++|+.|++++|.. ..+        
T Consensus        60 ~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i-~~l~~-l~~l~~L~~L~l~~~~~-~~~--------  127 (210)
T d1h6ta2          60 SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGI-SDI--------  127 (210)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEECTTSCC-CCC--------
T ss_pred             CchhHhhCCCCCEEeCCCccccCccc-cccCccccccccccccc-ccccc-ccccccccccccccccc-ccc--------
Confidence            34555455 99999999999999885 88999999999999765 45664 88999999999999643 333        


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..+..++. +.+++++|.+..  +..+..+++|+.+++++|.+.+ ++ .++++++|++|++++|.++++| .+..+
T Consensus       128 ---~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l  199 (210)
T d1h6ta2         128 ---NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISDLR-ALAGL  199 (210)
T ss_dssp             ---GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred             ---ccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCCCh-hhcCC
Confidence               35777888 999999987654  3356789999999999998765 44 3889999999999999999997 59999


Q ss_pred             CCCcEEEccC
Q 014835          160 SSLKILVLSN  169 (417)
Q Consensus       160 ~~L~~L~L~~  169 (417)
                      ++|++|+|++
T Consensus       200 ~~L~~L~Ls~  209 (210)
T d1h6ta2         200 KNLDVLELFS  209 (210)
T ss_dssp             TTCSEEEEEE
T ss_pred             CCCCEEEccC
Confidence            9999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.1e-14  Score=137.88  Aligned_cols=173  Identities=17%  Similarity=0.248  Sum_probs=88.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCC------CCCccccCCC
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFT------EIPSCNIDGG   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp------~l~~l~l~g~   83 (417)
                      +++.|++++|.++.+++ ....++|+.|++++|.+. .+| .+..+++|+.|++++|. +..++      .+..+.++++
T Consensus       198 ~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         198 NLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGAN  273 (384)
T ss_dssp             TCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS
T ss_pred             ccceeeccCCccCCCCc-ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCc-cCCCCcccccccCCEeeccCc
Confidence            56666666666665544 445566666666665433 233 25556666666666643 22221      1111111111


Q ss_pred             -----cccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhcc
Q 014835           84 -----IGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLG  157 (417)
Q Consensus        84 -----~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~  157 (417)
                           ..+..++. +.+.+..|.+.+ + ..+..+++++.|++++|++.+. + .+..+++|++|++++|.++.++ .++
T Consensus       274 ~l~~~~~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~-~l~  348 (384)
T d2omza2         274 QISNISPLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVS-SLA  348 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCG-GGG
T ss_pred             ccCCCCcccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCCh-hHc
Confidence                 23344444 555555554332 1 2344556666666666654432 2 2455666666666666665554 355


Q ss_pred             CCCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCC
Q 014835          158 QLSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPR  200 (417)
Q Consensus       158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n  200 (417)
                      .+++|++|++++|+ +++       ++ .+..+ +|+.|++++|
T Consensus       349 ~l~~L~~L~l~~N~-l~~-------l~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         349 NLTNINWLSAGHNQ-ISD-------LT-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSC-CCB-------CG-GGTTCTTCSEEECCCE
T ss_pred             CCCCCCEEECCCCc-CCC-------Ch-hhccCCCCCEeeCCCC
Confidence            66666666666665 331       32 24455 6666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=3.3e-15  Score=130.47  Aligned_cols=127  Identities=20%  Similarity=0.174  Sum_probs=93.3

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccc-cccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESI-SSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      ..+.++.+++++++||..+.  +++++|+|++|.+.+.+ +..|.++++|++|+|++|.                     
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~---------------------   65 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---------------------   65 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---------------------
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc---------------------
Confidence            56788999999999998764  68999999998876655 4556789999999998853                     


Q ss_pred             cccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEc
Q 014835           89 LASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVL  167 (417)
Q Consensus        89 l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L  167 (417)
                                  +....+..+..+++|++|+|++|++....|..|.++++|++|+|++|.|+.+|. .+..+++|++|+|
T Consensus        66 ------------i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          66 ------------LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             ------------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             ------------cccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccc
Confidence                        223334455567777777777777666666667777777777777777766654 4667777777777


Q ss_pred             cCCC
Q 014835          168 SNIK  171 (417)
Q Consensus       168 ~~n~  171 (417)
                      ++|.
T Consensus       134 ~~N~  137 (192)
T d1w8aa_         134 ASNP  137 (192)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            7776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.1e-13  Score=121.27  Aligned_cols=144  Identities=19%  Similarity=0.310  Sum_probs=117.7

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      +++.+... +|++|+|++|.++.+++ ++.+++|++|++++|... .++. +.++++|+.|++++|.... +        
T Consensus        54 ~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~~-~--------  121 (199)
T d2omxa2          54 SIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD-I--------  121 (199)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC-C--------
T ss_pred             CccccccCCCcCcCccccccccCccc-ccCCcccccccccccccc-cccc-ccccccccccccccccccc-c--------
Confidence            34445555 99999999999998886 999999999999997654 4554 8899999999999864432 2        


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..+..+++ +.|++++|.+. .++ .+..+++|+.|++.+|.+.+ ++ .++++++|+.|++++|++++++ .++.+
T Consensus       122 ---~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L  193 (199)
T d2omxa2         122 ---DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSDIS-VLAKL  193 (199)
T ss_dssp             ---GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGGC
T ss_pred             ---cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCCCc-cccCC
Confidence               35677888 99999999754 444 57899999999999998665 33 4889999999999999999886 48889


Q ss_pred             CCCcEE
Q 014835          160 SSLKIL  165 (417)
Q Consensus       160 ~~L~~L  165 (417)
                      ++|+.|
T Consensus       194 ~~L~~L  199 (199)
T d2omxa2         194 TNLESL  199 (199)
T ss_dssp             TTCSEE
T ss_pred             CCCCcC
Confidence            999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=8.3e-14  Score=124.55  Aligned_cols=169  Identities=20%  Similarity=0.237  Sum_probs=132.2

Q ss_pred             CCCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCcccc
Q 014835            2 NFPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNI   80 (417)
Q Consensus         2 ~lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l   80 (417)
                      +++.+... +|++|++++|.++.+++ +..+++|++|++++|.. +.++. +.++++|+.|++++|.... +        
T Consensus        55 ~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~~-l~~l~~L~~l~l~~~~~~~-~--------  122 (227)
T d1h6ua2          55 TIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSA-IAGLQSIKTLDLTSTQITD-V--------  122 (227)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGG-GTTCTTCCEEECTTSCCCC-C--------
T ss_pred             cchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccc-ccccc-ccccccccccccccccccc-c--------
Confidence            45555556 99999999999998875 89999999999999754 45654 8899999999999874322 1        


Q ss_pred             CCCcccccccc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCC
Q 014835           81 DGGIGIERLAS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQL  159 (417)
Q Consensus        81 ~g~~~l~~l~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L  159 (417)
                         ..+...+. ..+.++.+......  .+..+++|+.|++++|.+....  .++++++|+.|++++|.+..++. ++.+
T Consensus       123 ---~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l~~l  194 (227)
T d1h6ua2         123 ---TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-LASL  194 (227)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred             ---chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCChh-hcCC
Confidence               24555666 78888887655433  3567899999999998765432  37889999999999999988865 8889


Q ss_pred             CCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCC
Q 014835          160 SSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSP  199 (417)
Q Consensus       160 ~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~  199 (417)
                      ++|++|+|++|+ ++ .      ++ .+..+ .|+.|++++
T Consensus       195 ~~L~~L~Ls~N~-lt-~------i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNNQ-IS-D------VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTSC-CC-B------CG-GGTTCTTCCEEEEEE
T ss_pred             CCCCEEECcCCc-CC-C------Cc-ccccCCCCCEEEeeC
Confidence            999999999997 66 3      55 36677 999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=4.2e-13  Score=116.78  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch-hccCCCCCcEEEccCCCCChhhhhcccCCC
Q 014835          106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE-SLGQLSSLKILVLSNIKRLPEYLQLHLQLP  184 (417)
Q Consensus       106 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp  184 (417)
                      +..+..+++|+.|+|++|.+....+..+..+++|++|+|++|++..+|. .|..+++|++|+|++|. ++ .      +|
T Consensus        47 ~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~-~------i~  118 (192)
T d1w8aa_          47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-IS-C------VM  118 (192)
T ss_dssp             SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CC-E------EC
T ss_pred             ccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcc-cc-c------cC
Confidence            3456789999999999999999999999999999999999999988865 68999999999999999 66 2      55


Q ss_pred             C-ccccC-CcceeecCCCccc
Q 014835          185 E-NGLEG-IPEYLRRSPRKLT  203 (417)
Q Consensus       185 ~-~l~~l-~L~~L~l~~n~L~  203 (417)
                      . .+..+ .|++|++++|.+.
T Consensus       119 ~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         119 PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTSSTTCTTCCEEECTTCCBC
T ss_pred             HHHhcCCcccccccccccccc
Confidence            4 45566 9999999999976

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.8e-14  Score=118.22  Aligned_cols=130  Identities=15%  Similarity=0.172  Sum_probs=83.9

Q ss_pred             CCCcccC-cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccC
Q 014835            3 FPSVTSC-HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNID   81 (417)
Q Consensus         3 lP~~~~~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~   81 (417)
                      .|.+... .+++|+|++|+|+.+|..+..+++|+.|+|++|.+. .++. +..+++|++|++++|. +..+|        
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~~-~~~l~~L~~L~ls~N~-i~~l~--------   79 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNR-ICRIG--------   79 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EECC-CCCCSSCCEEECCSSC-CCEEC--------
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccCC-cccCcchhhhhccccc-ccCCC--------
Confidence            4555555 778888888888877765566778888888876543 4543 6777777777777752 22221        


Q ss_pred             CCccccccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC-CcccCCCCCCCEEEeeccCCCCcch----hc
Q 014835           82 GGIGIERLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL-PDELGNLEALETLIVDRTAMREVPE----SL  156 (417)
Q Consensus        82 g~~~l~~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~n~l~~lp~----~l  156 (417)
                                              +..+..+++|++|++++|++...- ...+..+++|++|++++|.+...|.    .+
T Consensus        80 ------------------------~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i  135 (162)
T d1a9na_          80 ------------------------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI  135 (162)
T ss_dssp             ------------------------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHH
T ss_pred             ------------------------ccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHH
Confidence                                    122345677777777777654321 1346667777777777777766653    45


Q ss_pred             cCCCCCcEEEc
Q 014835          157 GQLSSLKILVL  167 (417)
Q Consensus       157 ~~L~~L~~L~L  167 (417)
                      ..+++|++||-
T Consensus       136 ~~lp~L~~LD~  146 (162)
T d1a9na_         136 YKVPQVRVLDF  146 (162)
T ss_dssp             HHCTTCSEETT
T ss_pred             HHCCCcCeeCC
Confidence            66777777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.1e-13  Score=109.12  Aligned_cols=102  Identities=15%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             cEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccccc
Q 014835           12 YTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLAS   91 (417)
Q Consensus        12 ~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~   91 (417)
                      |.|+|++|+|+.+|. ++.+++|++|++++|.+ +.+|..++.+++|++|++++| .++                     
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N-~i~---------------------   56 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDN-ALE---------------------   56 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSS-CCC---------------------
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-Ccchhhhhhhhcccccccccc-ccc---------------------
Confidence            578999999988875 88889999999988654 567777888888999888885 222                     


Q ss_pred             ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccC-CcccCCCCCCCEEEeeccCCC
Q 014835           92 CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMIL-PDELGNLEALETLIVDRTAMR  150 (417)
Q Consensus        92 ~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~l-p~~l~~l~~L~~L~L~~n~l~  150 (417)
                                  .+| .+..+++|++|++++|.+.... ...++.+++|+.|++++|.+.
T Consensus        57 ------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          57 ------------NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ------------CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ------------ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence                        222 2556667777777776654321 234566666666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.38  E-value=1.2e-11  Score=116.51  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             CCCCcccCcccEEEeecCCCcccCccccCC-----------------cCcceeeccccccCccccccCCCCCCCcEEeee
Q 014835            2 NFPSVTSCHVYTLELVKVGIKELPSSIECL-----------------SNLKKLYIVDCSMLESISSSIFKLKSLQSIEIS   64 (417)
Q Consensus         2 ~lP~~~~~~L~~L~Ls~n~l~~lp~~i~~L-----------------~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls   64 (417)
                      ++|+.. .+|++|+|++|+|+++|..+++|                 +.|++|++++|. +..+|. ++.+++|++|+++
T Consensus        52 ~lp~~~-~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          52 SLPELP-PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             CCCSCC-TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECC
T ss_pred             CCCCCC-CCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhccccccccccccc-cccccc-hhhhccceeeccc
Confidence            455432 16777777777777777654322                 134455555433 233443 4456666666666


Q ss_pred             cC
Q 014835           65 NC   66 (417)
Q Consensus        65 ~c   66 (417)
                      +|
T Consensus       129 ~~  130 (353)
T d1jl5a_         129 NN  130 (353)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.7e-14  Score=129.71  Aligned_cols=177  Identities=17%  Similarity=0.155  Sum_probs=128.9

Q ss_pred             cccEEEeecCCCc--ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKVGIK--ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n~l~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      .|++|||+++.++  .++..+..+++|++|+|++|......+..+.++++|++|++++|..++...- .       .-..
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l-~-------~l~~  118 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL-Q-------TLLS  118 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH-H-------HHHH
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccccc-c-------hhhH
Confidence            8999999998876  3555578899999999999987777777788899999999999876542110 0       1234


Q ss_pred             cccc-ceEEcCCCCCCCC--Cccccc-CCCCCcEEeccccc--CCc-cCCcccCCCCCCCEEEeeccC-CC-CcchhccC
Q 014835           88 RLAS-CRLVLEDCSSLQS--LPSSLC-MFKSLTSLEIIDCQ--YFM-ILPDELGNLEALETLIVDRTA-MR-EVPESLGQ  158 (417)
Q Consensus        88 ~l~~-~~L~L~~n~~l~~--lp~~l~-~l~~L~~L~L~~n~--~~~-~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~  158 (417)
                      .+++ +.|++++|.....  ++..+. ..++|+.|+++++.  +.. .+...+.++++|++|++++|. ++ .....+..
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            5678 8999998865542  222232 34789999999864  221 233334568899999999875 54 45567888


Q ss_pred             CCCCcEEEccCCCCChhhhhcccCCCCccccC-CcceeecCCC
Q 014835          159 LSSLKILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYLRRSPR  200 (417)
Q Consensus       159 L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L~l~~n  200 (417)
                      +++|++|+|++|..+++.      ....+... +|+.|++.+|
T Consensus       199 ~~~L~~L~L~~C~~i~~~------~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPE------TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGG------GGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChH------HHHHHhcCCCCCEEeeeCC
Confidence            999999999998767655      33456667 8999999887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.5e-12  Score=112.34  Aligned_cols=185  Identities=17%  Similarity=0.167  Sum_probs=133.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      ..+.++.++.+++++|..+.  +++++|+|++|.+. .+| ..|.++++|++|++++|.....++.         ..+..
T Consensus         9 ~~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~---------~~f~~   76 (242)
T d1xwdc1           9 SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEA---------DVFSN   76 (242)
T ss_dssp             CSSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECS---------SSEES
T ss_pred             cCCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeec---------ccccc
Confidence            45789999999999998764  58999999997654 555 4688999999999999877666654         56778


Q ss_pred             ccc-ceEEcCCC-CCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCCCcch-hccCC-CCCc
Q 014835           89 LAS-CRLVLEDC-SSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMREVPE-SLGQL-SSLK  163 (417)
Q Consensus        89 l~~-~~L~L~~n-~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L-~~L~  163 (417)
                      ++. +.+.+..+ .+....+..+..+++|++|++++|.+....+ ..+..+..+..+...++.+..++. .+..+ ..++
T Consensus        77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  156 (242)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccce
Confidence            888 88887654 4445556778899999999999998654322 223445566666667777777653 44444 4788


Q ss_pred             EEEccCCCCChhhhhcccCCCCccccC-Cccee-ecCCCccc-cCcCccccccc
Q 014835          164 ILVLSNIKRLPEYLQLHLQLPENGLEG-IPEYL-RRSPRKLT-LDPNELSEIVK  214 (417)
Q Consensus       164 ~L~L~~n~~l~~~l~~~l~lp~~l~~l-~L~~L-~l~~n~L~-lp~~~L~~l~~  214 (417)
                      .|++++|. ++ .      ++...... .+..+ .+.+|.|+ +|+..+..+..
T Consensus       157 ~L~l~~n~-l~-~------i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~  202 (242)
T d1xwdc1         157 ILWLNKNG-IQ-E------IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASG  202 (242)
T ss_dssp             EEECCSSC-CC-E------ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCC
T ss_pred             eeeccccc-cc-c------cccccccchhhhccccccccccccccHHHhcCCCC
Confidence            99999988 55 3      66666666 55555 56777788 88765555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.3e-13  Score=112.52  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=94.4

Q ss_pred             ccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccccccceEEcCCCCCC
Q 014835           23 ELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERLASCRLVLEDCSSL  102 (417)
Q Consensus        23 ~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l~~~~L~L~~n~~l  102 (417)
                      ..|. +.+..+|++|+|++|++ +.+|..+..+++|++|+|++|. +..                               
T Consensus        10 ~~~~-~~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~-i~~-------------------------------   55 (162)
T d1a9na_          10 QAAQ-YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRK-------------------------------   55 (162)
T ss_dssp             TSCE-EECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCE-------------------------------
T ss_pred             hhHh-ccCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCC-CCc-------------------------------
Confidence            4444 56777888889888654 4456655678888888888852 222                               


Q ss_pred             CCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEEEccCCCCChhhhhcc
Q 014835          103 QSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSNIKRLPEYLQLH  180 (417)
Q Consensus       103 ~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~~l~~~l~~~  180 (417)
                        ++ .+..+++|++|++++|.+....+..+..+++|+.|++++|.+..++.  .+..+++|++|++++|+ +. .    
T Consensus        56 --l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~-~----  126 (162)
T d1a9na_          56 --LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VT-N----  126 (162)
T ss_dssp             --EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GG-G----
T ss_pred             --cC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCc-cc-c----
Confidence              21 25578899999999999776555556779999999999999987764  67889999999999998 44 2    


Q ss_pred             cCCCC----ccccC-Ccceee
Q 014835          181 LQLPE----NGLEG-IPEYLR  196 (417)
Q Consensus       181 l~lp~----~l~~l-~L~~L~  196 (417)
                        .|.    .+..+ +|+.||
T Consensus       127 --~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         127 --KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             --STTHHHHHHHHCTTCSEET
T ss_pred             --ccchHHHHHHHCCCcCeeC
Confidence              342    24455 777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.21  E-value=4.5e-10  Score=105.32  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCC----CCccccCCC--
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTE----IPSCNIDGG--   83 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~----l~~l~l~g~--   83 (417)
                      ++++|+|++++++++|+.   +++|++|+|++|+ ++.+|..   +.+|+.|++++| .++.++.    +..|+++++  
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~lp~~L~~L~L~~n~l  110 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQL  110 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSCCTTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC-Ccccccc---hhhhhhhhhhhc-ccchhhhhcccccccccccccc
Confidence            689999999999999974   4689999999865 4578874   457888888885 3444443    233444444  


Q ss_pred             ---cccccccc-ceEEcCCCCC
Q 014835           84 ---IGIERLAS-CRLVLEDCSS  101 (417)
Q Consensus        84 ---~~l~~l~~-~~L~L~~n~~  101 (417)
                         ..++.++. +.|++++|..
T Consensus       111 ~~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         111 EKLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccchhhhccceeeccccccc
Confidence               23444555 6666655543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.4e-11  Score=97.73  Aligned_cols=66  Identities=21%  Similarity=0.305  Sum_probs=42.5

Q ss_pred             CCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEEEccCCC
Q 014835          104 SLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKILVLSNIK  171 (417)
Q Consensus       104 ~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~n~  171 (417)
                      .+|..+..+++|+.|++++|.+.. +| .++.+++|+.|++++|.++.+|.  .+..+++|+.|++++|+
T Consensus        34 ~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          34 ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc
Confidence            455556667777777777766543 33 36667777777777777765542  45666777777777766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=3.7e-13  Score=117.88  Aligned_cols=124  Identities=19%  Similarity=0.247  Sum_probs=78.9

Q ss_pred             cccEEEeecC--CCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccc
Q 014835           10 HVYTLELVKV--GIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIE   87 (417)
Q Consensus        10 ~L~~L~Ls~n--~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~   87 (417)
                      .++.+++++.  .++.+|.++..+++|++|+|++|.+. .++. +..+++|++|+|++| .++.+|              
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l~~l~~L~~L~Ls~N-~i~~i~--------------   86 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRN-LIKKIE--------------   86 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCCC-HHHHTTCCEEECCEE-EECSCS--------------
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Cccc-ccCCccccChhhccc-cccccc--------------
Confidence            5667777763  56778888888999999999887644 5553 778888999999885 233333              


Q ss_pred             ccccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcch--hccCCCCCcEE
Q 014835           88 RLASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPE--SLGQLSSLKIL  165 (417)
Q Consensus        88 ~l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L  165 (417)
                                         .....+++|+.|++++|.+.. + +.+..+++|+.|++++|.++.++.  .+..+++|+.|
T Consensus        87 -------------------~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          87 -------------------NLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             -------------------SHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             -------------------ccccccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCcccee
Confidence                               222233456666666665432 2 224555666666666666655542  45666666666


Q ss_pred             EccCCC
Q 014835          166 VLSNIK  171 (417)
Q Consensus       166 ~L~~n~  171 (417)
                      +|++|+
T Consensus       146 ~L~~N~  151 (198)
T d1m9la_         146 LLAGNP  151 (198)
T ss_dssp             EECSSH
T ss_pred             ecCCCc
Confidence            666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=9.3e-11  Score=108.09  Aligned_cols=153  Identities=21%  Similarity=0.279  Sum_probs=111.2

Q ss_pred             cccEEEeecCCCc-ccCccccCCcCcceeeccccccCcc--ccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccc
Q 014835           10 HVYTLELVKVGIK-ELPSSIECLSNLKKLYIVDCSMLES--ISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGI   86 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~Ls~n~~~~~--lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l   86 (417)
                      +|++|+|+++.++ ..+..++.+++|++|+|++|..++.  +..-..++++|++|++++|..+..-.. .       ..+
T Consensus        72 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~-~-------~~~  143 (284)
T d2astb2          72 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-Q-------VAV  143 (284)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-H-------HHH
T ss_pred             CcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccc-h-------hhh
Confidence            8999999999887 5666788999999999999876653  233235689999999999866542100 0       122


Q ss_pred             ccc-cc-ceEEcCCCCC-CC--CCcccccCCCCCcEEeccccc-CCccCCcccCCCCCCCEEEeecc-CCC-CcchhccC
Q 014835           87 ERL-AS-CRLVLEDCSS-LQ--SLPSSLCMFKSLTSLEIIDCQ-YFMILPDELGNLEALETLIVDRT-AMR-EVPESLGQ  158 (417)
Q Consensus        87 ~~l-~~-~~L~L~~n~~-l~--~lp~~l~~l~~L~~L~L~~n~-~~~~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~l~~  158 (417)
                      ... +. +.|++++|.. ++  .+......+++|++|++++|. +....+..+.++++|++|++++| .++ .....++.
T Consensus       144 ~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            233 45 8888887632 22  233334568999999999976 45566677888999999999996 453 33456788


Q ss_pred             CCCCcEEEccCC
Q 014835          159 LSSLKILVLSNI  170 (417)
Q Consensus       159 L~~L~~L~L~~n  170 (417)
                      +++|+.|++++|
T Consensus       224 ~~~L~~L~l~~~  235 (284)
T d2astb2         224 IPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeeeCC
Confidence            999999999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.1e-10  Score=93.57  Aligned_cols=63  Identities=25%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             ccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcchhccCCCCCcEEEccCCC
Q 014835          109 LCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       109 l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      |..+++|+.|+|++|++....|..|..+++|++|+|++|+++.+|..+....+|+.|+|++|+
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             hccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCCc
Confidence            344455555555555544444445555555555555555555555544333456666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.96  E-value=1.2e-12  Score=114.52  Aligned_cols=120  Identities=21%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      +|++|+|++|.|+.++ .+..+++|++|+|++|.+ +.+|.....+++|++|++++|. ++.                  
T Consensus        49 ~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~-i~~------------------  107 (198)
T d1m9la_          49 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-IAS------------------  107 (198)
T ss_dssp             TCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEE-CCC------------------
T ss_pred             ccceeECcccCCCCcc-cccCCccccChhhccccc-cccccccccccccccccccccc-ccc------------------
Confidence            8999999999999997 499999999999999764 4566544456789999999862 222                  


Q ss_pred             ccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCC-cccCCCCCCCEEEeeccCCCCcch-----------hcc
Q 014835           90 ASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILP-DELGNLEALETLIVDRTAMREVPE-----------SLG  157 (417)
Q Consensus        90 ~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-----------~l~  157 (417)
                                     + ..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+...+.           .+.
T Consensus       108 ---------------l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_         108 ---------------L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             ---------------H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             ---------------c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence                           2 124456677777777776543211 346677777777777776632221           145


Q ss_pred             CCCCCcEEE
Q 014835          158 QLSSLKILV  166 (417)
Q Consensus       158 ~L~~L~~L~  166 (417)
                      .+++|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            677888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-09  Score=90.06  Aligned_cols=106  Identities=16%  Similarity=0.167  Sum_probs=76.6

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCcccc-ccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESIS-SSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIER   88 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~   88 (417)
                      ..+.++.+++++.++|..+..+++|++|++++++.++.++ ..|.++++|+.|+|++| .++.+                
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i----------------   71 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFV----------------   71 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEE----------------
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCc----------------
Confidence            5667888888888888888888899999988766566564 55888888988888885 23332                


Q ss_pred             cccceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCC
Q 014835           89 LASCRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAM  149 (417)
Q Consensus        89 l~~~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l  149 (417)
                                      -|..|..+++|++|+|++|++. .+|.......+|+.|+|++|.+
T Consensus        72 ----------------~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          72 ----------------APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             ----------------CTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             ----------------ccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence                            2455667778888888887755 4444433444688888888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=1.4e-09  Score=102.54  Aligned_cols=191  Identities=13%  Similarity=0.095  Sum_probs=107.7

Q ss_pred             cccEEEeecCCCc-----ccCccccCCcCcceeeccccccCc----------cccccCCCCCCCcEEeeecCCCCC----
Q 014835           10 HVYTLELVKVGIK-----ELPSSIECLSNLKKLYIVDCSMLE----------SISSSIFKLKSLQSIEISNCPIFE----   70 (417)
Q Consensus        10 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~Ls~n~~~~----------~lp~~l~~L~~L~~L~Ls~c~~l~----   70 (417)
                      .|++|+|++|.+.     .+-..+...++|+.|+++++....          .+...+...++|+.|+|++|..-.    
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            7889999988775     244456778888899888754321          122335567889999998864211    


Q ss_pred             -------cCCCCCccccCCCc-----------cc---------ccccc-ceEEcCCCCCCC----CCcccccCCCCCcEE
Q 014835           71 -------RFTEIPSCNIDGGI-----------GI---------ERLAS-CRLVLEDCSSLQ----SLPSSLCMFKSLTSL  118 (417)
Q Consensus        71 -------~lp~l~~l~l~g~~-----------~l---------~~l~~-~~L~L~~n~~l~----~lp~~l~~l~~L~~L  118 (417)
                             ..+.+..+.++++.           .+         ...+. +.+.+++|.+..    .+...+...+.|+.|
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence                   12334444554430           00         12233 556666654432    122334456677777


Q ss_pred             ecccccCCcc-----CCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEccCCCCChhhhhcccCCCCccc
Q 014835          119 EIIDCQYFMI-----LPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVLSNIKRLPEYLQLHLQLPENGL  188 (417)
Q Consensus       119 ~L~~n~~~~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~  188 (417)
                      ++++|.+...     +...+..+++|+.|++++|.++.     +...+...++|++|+|++|. +.+.....  +-..+.
T Consensus       192 ~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~--l~~~l~  268 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA--VVDAFS  268 (344)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH--HHHHHH
T ss_pred             ccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchhhHH--HHHHhh
Confidence            7777765431     23345566777777777777632     33455667777777777776 43220000  111111


Q ss_pred             --cC-CcceeecCCCccc
Q 014835          189 --EG-IPEYLRRSPRKLT  203 (417)
Q Consensus       189 --~l-~L~~L~l~~n~L~  203 (417)
                        .. .|+.|++++|.++
T Consensus       269 ~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TCSSCCCCEEECCSSCCB
T ss_pred             hccCCCCCEEECCCCcCC
Confidence              12 5777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.69  E-value=2.9e-09  Score=100.31  Aligned_cols=191  Identities=12%  Similarity=0.068  Sum_probs=127.4

Q ss_pred             cccEEEeecCCCcc-----------cCccccCCcCcceeeccccccCcc----ccccCCCCCCCcEEeeecCCCC-----
Q 014835           10 HVYTLELVKVGIKE-----------LPSSIECLSNLKKLYIVDCSMLES----ISSSIFKLKSLQSIEISNCPIF-----   69 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~-----------lp~~i~~L~~L~~L~Ls~n~~~~~----lp~~l~~L~~L~~L~Ls~c~~l-----   69 (417)
                      +|+.|+++++....           +...+...++|+.|+|++|.+...    +...+...++|++|++++|..-     
T Consensus        60 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~  139 (344)
T d2ca6a1          60 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  139 (344)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             CCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccc
Confidence            78889988754432           223345678899999998865543    3344556788999999887520     


Q ss_pred             ---------------CcCCCCCccccCCC-----------cccccccc-ceEEcCCCCCCCC-----CcccccCCCCCcE
Q 014835           70 ---------------ERFTEIPSCNIDGG-----------IGIERLAS-CRLVLEDCSSLQS-----LPSSLCMFKSLTS  117 (417)
Q Consensus        70 ---------------~~lp~l~~l~l~g~-----------~~l~~l~~-~~L~L~~n~~l~~-----lp~~l~~l~~L~~  117 (417)
                                     ...+.+..+.++++           ..+...+. +.|+|++|.+...     +...+..+++|+.
T Consensus       140 ~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~  219 (344)
T d2ca6a1         140 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV  219 (344)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred             cccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcc
Confidence                           12334444444443           23455677 9999999976542     3345667899999


Q ss_pred             EecccccCCcc----CCcccCCCCCCCEEEeeccCCCC-----cchhccC--CCCCcEEEccCCCCChhhhhcccCCCCc
Q 014835          118 LEIIDCQYFMI----LPDELGNLEALETLIVDRTAMRE-----VPESLGQ--LSSLKILVLSNIKRLPEYLQLHLQLPEN  186 (417)
Q Consensus       118 L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~--L~~L~~L~L~~n~~l~~~l~~~l~lp~~  186 (417)
                      |++++|.+...    +...+..+++|++|++++|.++.     +-..+..  ...|+.|++++|. +.+...  ..+...
T Consensus       220 L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~--~~l~~~  296 (344)
T d2ca6a1         220 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAV--RTLKTV  296 (344)
T ss_dssp             EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHH--HHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHH--HHHHHH
Confidence            99999986532    44567788999999999999953     2223333  4679999999998 542200  002223


Q ss_pred             cc-cC-CcceeecCCCccc
Q 014835          187 GL-EG-IPEYLRRSPRKLT  203 (417)
Q Consensus       187 l~-~l-~L~~L~l~~n~L~  203 (417)
                      +. .. .|+.|++++|.+.
T Consensus       297 l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         297 IDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHCTTCCEEECTTSBSC
T ss_pred             HHccCCCCCEEECCCCcCC
Confidence            43 35 7999999999975

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.8e-07  Score=84.67  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=91.5

Q ss_pred             cccEEEeecCCCcc--cCccccCCcCcceeeccccccCc----cccccCCCCCCCcEEeeecCCCCCcCC--CCCccccC
Q 014835           10 HVYTLELVKVGIKE--LPSSIECLSNLKKLYIVDCSMLE----SISSSIFKLKSLQSIEISNCPIFERFT--EIPSCNID   81 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~--lp~~i~~L~~L~~L~Ls~n~~~~----~lp~~l~~L~~L~~L~Ls~c~~l~~lp--~l~~l~l~   81 (417)
                      +|++||+++++++.  +..-+..+++|++|+|++|.+..    .++..+..+++|++|+|++|. ++...  .+.     
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~-----   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVL-----   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHH-----
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHH-----
Confidence            68999999999984  34446778999999999997653    345567789999999999863 22100  000     


Q ss_pred             CCccccc-ccc-ceEEcCCCCCCCC----CcccccCCCCCcEEecccccCCccC----Cccc-CCCCCCCEEEeeccCCC
Q 014835           82 GGIGIER-LAS-CRLVLEDCSSLQS----LPSSLCMFKSLTSLEIIDCQYFMIL----PDEL-GNLEALETLIVDRTAMR  150 (417)
Q Consensus        82 g~~~l~~-l~~-~~L~L~~n~~l~~----lp~~l~~l~~L~~L~L~~n~~~~~l----p~~l-~~l~~L~~L~L~~n~l~  150 (417)
                        ..+.. ..+ +.|+|++|.+...    ++..+..+++|++|++++|.+...-    ...+ ........+......+.
T Consensus        77 --~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          77 --QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             --HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             --HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence              11111 234 7788887765432    3455667778888888877654321    1111 11223333443333332


Q ss_pred             Cc-----chhccCCCCCcEEEccCCC
Q 014835          151 EV-----PESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       151 ~l-----p~~l~~L~~L~~L~L~~n~  171 (417)
                      ..     -..+.....++.++++++.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~  180 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNND  180 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             hhhhcccccccccccccccccccccc
Confidence            11     1123445667777777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.5e-07  Score=86.51  Aligned_cols=109  Identities=26%  Similarity=0.159  Sum_probs=55.4

Q ss_pred             ceEEcCCCCCCCCC----cccccCCCCCcEEecccccCCc----cCCcccC-CCCCCCEEEeeccCCCC-----cchhcc
Q 014835           92 CRLVLEDCSSLQSL----PSSLCMFKSLTSLEIIDCQYFM----ILPDELG-NLEALETLIVDRTAMRE-----VPESLG  157 (417)
Q Consensus        92 ~~L~L~~n~~l~~l----p~~l~~l~~L~~L~L~~n~~~~----~lp~~l~-~l~~L~~L~L~~n~l~~-----lp~~l~  157 (417)
                      +.+++++|.+....    ...+...++|++|+|++|.+..    .++..+. ..+.|++|+|++|.++.     +...+.
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence            56666666544322    1223344567777777766532    2233332 34557777777777642     334455


Q ss_pred             CCCCCcEEEccCCCCChhhhhcccCCCCccc-cC-CcceeecCCCccc
Q 014835          158 QLSSLKILVLSNIKRLPEYLQLHLQLPENGL-EG-IPEYLRRSPRKLT  203 (417)
Q Consensus       158 ~L~~L~~L~L~~n~~l~~~l~~~l~lp~~l~-~l-~L~~L~l~~n~L~  203 (417)
                      .+++|++|+|++|+ +++...  ..+...+. .. .|+.|++.++.+.
T Consensus       395 ~~~~L~~L~Ls~N~-i~~~g~--~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         395 ANHSLRELDLSNNC-LGDAGI--LQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HCCCCCEEECCSSS-CCHHHH--HHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             cCCCCCEEECCCCc-CCHHHH--HHHHHHHHhCCCccCEEECCCCCCC
Confidence            56677777777776 432200  00111222 12 5666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=4e-06  Score=69.53  Aligned_cols=61  Identities=15%  Similarity=-0.007  Sum_probs=38.4

Q ss_pred             cccccCCCCCcEEecccccCCccCCcccCCCCCCCEEEeeccCCCCcc--------hhccCCCCCcEEE
Q 014835          106 PSSLCMFKSLTSLEIIDCQYFMILPDELGNLEALETLIVDRTAMREVP--------ESLGQLSSLKILV  166 (417)
Q Consensus       106 p~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--------~~l~~L~~L~~L~  166 (417)
                      +..+..+++|+.|++++|.+...-+-.......|+.|++++|.+....        ..+..+++|+.||
T Consensus        84 ~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          84 SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             GTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            344556778888888887755432222223446788888888874322        1256788888886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.2e-06  Score=71.13  Aligned_cols=122  Identities=15%  Similarity=0.015  Sum_probs=74.2

Q ss_pred             cccEEEeecCCCcccCccccCCcCcceeeccccccCccccccCCCCCCCcEEeeecCCCCCcCCCCCccccCCCcccccc
Q 014835           10 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSMLESISSSIFKLKSLQSIEISNCPIFERFTEIPSCNIDGGIGIERL   89 (417)
Q Consensus        10 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~L~~L~~L~Ls~c~~l~~lp~l~~l~l~g~~~l~~l   89 (417)
                      ..+.|++++..  ..+ .+..+..+..|+... .....++.....+++|++|+|++| .++.++.+.       ..+..+
T Consensus        23 ~~~~Ldls~l~--~~~-~l~~~~~~~~l~~~~-~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~-------~~~~~l   90 (162)
T d1koha1          23 SQQALDLKGLR--SDP-DLVAQNIDVVLNRRS-SMAATLRIIEENIPELLSLNLSNN-RLYRLDDMS-------SIVQKA   90 (162)
T ss_dssp             SSCCBCCCCCS--SCT-TTTTTTCCCCTTSHH-HHHHHHHHHHHHCTTCCCCCCCSS-CCCCCSGGG-------THHHHS
T ss_pred             hhCeeecccCC--CCc-hhhhccchhhcchhh-hHhhhhHHHHHhCCCCCEeeCCCc-cccCCchhH-------HHHhhC
Confidence            44556665432  222 244445555555554 233444444456888999999985 344443221       345667


Q ss_pred             cc-ceEEcCCCCCCCCCcccccCCCCCcEEecccccCCccCCc-------ccCCCCCCCEEE
Q 014835           90 AS-CRLVLEDCSSLQSLPSSLCMFKSLTSLEIIDCQYFMILPD-------ELGNLEALETLI  143 (417)
Q Consensus        90 ~~-~~L~L~~n~~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~-------~l~~l~~L~~L~  143 (417)
                      ++ +.|+|++|.+...-+-.......|+.|++++|++......       .+..+++|+.||
T Consensus        91 ~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          91 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            88 8889998866543222333456799999999988765442       256788999885

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00016  Score=59.69  Aligned_cols=63  Identities=13%  Similarity=-0.034  Sum_probs=34.2

Q ss_pred             ccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCCCc--------chhccCCCCCcEEEccCCC
Q 014835          109 LCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMREV--------PESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       109 l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~l--------p~~l~~L~~L~~L~L~~n~  171 (417)
                      +...+.|++|+|++|.+...    +-..+...++|++|++++|.+..+        ...+..-++|+.|+++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            33445666667766665432    223455566677777766654322        2233445666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.88  E-value=0.0016  Score=53.19  Aligned_cols=61  Identities=18%  Similarity=0.146  Sum_probs=31.4

Q ss_pred             CCCCCcEEecccccCCcc----CCcccCCCCCCCEEEee--ccCCC-----CcchhccCCCCCcEEEccCCC
Q 014835          111 MFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVD--RTAMR-----EVPESLGQLSSLKILVLSNIK  171 (417)
Q Consensus       111 ~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~--~n~l~-----~lp~~l~~L~~L~~L~L~~n~  171 (417)
                      ..++++.|++++|.+...    +...+...++|+.++|+  +|.++     .+...+...++|+.|+++.+.
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            445566666666554322    22344455666655443  34442     233345556667777665544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.72  E-value=0.002  Score=52.73  Aligned_cols=93  Identities=13%  Similarity=0.052  Sum_probs=58.7

Q ss_pred             ccccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCCC-----cchhccCCCCCcEEEccCCCC--Chh
Q 014835          107 SSLCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMRE-----VPESLGQLSSLKILVLSNIKR--LPE  175 (417)
Q Consensus       107 ~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~n~~--l~~  175 (417)
                      ..+...++|++|+|++|.+...    +...+...+.|++|+|++|.++.     +-..+..-++|++|+|++|..  +.+
T Consensus        38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence            3455667899999998876532    22345567889999999998853     334567778899999988751  111


Q ss_pred             hhhcccCCCCccccC-CcceeecCCCc
Q 014835          176 YLQLHLQLPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       176 ~l~~~l~lp~~l~~l-~L~~L~l~~n~  201 (417)
                      .  ....+...+... .|+.|+++.+.
T Consensus       118 ~--~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         118 Q--VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             H--HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             H--HHHHHHHHHHhCCCccEeeCcCCC
Confidence            1  000022233344 67777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.30  E-value=0.005  Score=50.09  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=59.6

Q ss_pred             ccccCCCCCcEEecccccCCcc----CCcccCCCCCCCEEEeeccCCC-----CcchhccCCCCCcEEEcc--CCCCChh
Q 014835          107 SSLCMFKSLTSLEIIDCQYFMI----LPDELGNLEALETLIVDRTAMR-----EVPESLGQLSSLKILVLS--NIKRLPE  175 (417)
Q Consensus       107 ~~l~~l~~L~~L~L~~n~~~~~----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~--~n~~l~~  175 (417)
                      ..+...++|++|++++|.+...    +-..+...++|+.|++++|.++     .+-..+...++|+.++|.  +|. +.+
T Consensus        40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~-i~~  118 (166)
T d1io0a_          40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGN  118 (166)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCH
T ss_pred             HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCc-CcH
Confidence            4455778899999999876543    2234556788999999999884     234566778889876665  444 432


Q ss_pred             hhhcccCCCCccccC-CcceeecCCCc
Q 014835          176 YLQLHLQLPENGLEG-IPEYLRRSPRK  201 (417)
Q Consensus       176 ~l~~~l~lp~~l~~l-~L~~L~l~~n~  201 (417)
                      ....  .+...+... .|+.|+++.+.
T Consensus       119 ~~~~--~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         119 NVEM--EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHH--HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHH--HHHHHHHhCCCcCEEeCcCCC
Confidence            2000  023334455 88888887765