Citrus Sinensis ID: 014845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Secondary Structure (PSIPRED)
cEEEEEEEEHHccccccccccHHHccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccEEcccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEccccccccccEEEEccccccccHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEccccccccHHHHccccccccEEEEccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEccccccccccccccccccccccccEcccHccEccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccccccEEEEccEEEEccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEcccccccHcccccHHccccccccHHHcEHcccccccEEEEEccccccHHHHHHHHHcccccHEEEEEEHccccccHHHccHHEEccccccHHHHHHcc
Coil and Loop (DISEMBL)
MIVVVLKIIVGFLFHLQFRCEHLQnaesmssrtflcasrrplqdlsfkkqkaypqnvdlptlppkkkkkpypipieKIRQVAKKDKRLAEmgiekpleppkngilvpdLIHVAYEVIDAWKLLIKGLAQLLHvipvygcsecsevhvahsghhiqncqgataaKRRSFHSWVrgsindillpvesyhlydpfgrrikhesrfdydriPAVVELCIQagvdipeypsrrrtkpirtLGKKvidrggfveeprpwrsrgssalsdldtdgacgrlpppsladvpriAQETMDAYEVVRSGVTKLMRKYSVkacgycpevhigpwghnvklcgafkhqwrdgkhgwqdavvdevfppnyvwhvqdpkgpplRSALKRYYGKAPAVVEVCMQAgaqvpeqykptmrldiivpeseevdlva
Flexible Loop (DISEMBL)
MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDlsfkkqkaypqnvdlptlppkkkkkpypipiekirQVAKKDKRLAEMgiekpleppkngiLVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIqagvdipeypsrrrtkpirtlgkkvidrggfveeprpwrsrgssALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGaqvpeqykpTMRLDIivpeseevdlva
Low Complexity Region (SEG)
MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLppkkkkkpypipiekiRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Disordered region (IsUnstruct)
*IVVVLKIIVGFLFHLQFRCEHLQNA******TFLC*****************************************************************NGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYP*******IRTLGKKVIDRGGF*************************************IAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIV**********
Disordered Region (DISOPRED)
MIVVVLKIIVGFLFHLQFRC************************************VDL**********PYPIPIEK*************************GILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQG*********HSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRG***************************************IAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPES***DLVA
Disordered Region (DISEMBL)
MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAH*****************SFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Disordered Region (DISPRO)
MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGG***************************LPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q9XIR4	436	APO protein 1, chloroplas	yes	no	0.932	0.892	0.677	1e-161
Q8W4A5	440	APO protein 2, chloroplas	no	no	0.954	0.904	0.428	4e-93
Q9FH50	402	APO protein 3, mitochondr	no	no	0.856	0.888	0.425	1e-83
Q9LSZ0	337	APO protein 4, mitochondr	no	no	0.731	0.905	0.354	2e-49

>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1

 Score =  566 bits (1460), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)

Query: 29  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 88
           M   T  C +++  +  SFKK+    QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 46  MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 105

Query: 89  AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 148
           A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA
Sbjct: 106 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 165

Query: 149 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 208
           + GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 166 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 225

Query: 209 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 266
           A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT
Sbjct: 226 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 285

Query: 267 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 326
            G   R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 286 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 345

Query: 327 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 386
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 346 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 405

Query: 387 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 406 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436

Involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. May participate in 4Fe-4S cofactor incorporation into psaA and/or psaB during translation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1

 Score =  342 bits (876), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 175/408 (42%), Positives = 260/408 (63%), Gaps = 10/408 (2%)

Query: 12  FLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPY 71
           F F    +   ++ +  ++SR  L   RR    L    +   PQN DLP    +++KKP+
Sbjct: 39  FGFSPSLQGSSIEFSLQLNSRVVLSKERR---SLPLVVRNDRPQNEDLPKQYTRREKKPF 95

Query: 72  PIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLL 131
           P+PI  +R+ A++  +  +   ++PL PPKNG++V  L+ +AY+V +A   LI  L +L+
Sbjct: 96  PVPIVDLRRAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLM 155

Query: 132 HVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDP 191
            V+ V  C  C+E+HV   GH  ++C+G   ++R+  H W    I D+++P+E+YHL+D 
Sbjct: 156 KVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDR 215

Query: 192 FGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGK-KVIDRGGFVEEP 250
            G+RI+H+ RF   R+PAVVELCIQ GV+IPE+P++RR KPI  +GK + +D     +E 
Sbjct: 216 LGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVD----ADET 271

Query: 251 RPWRSRGSSALSDLDTDGACGRLPPPSLAD-VPRIAQETMDAYEVVRSGVTKLMRKYSVK 309
                        L T+     + PPS  +    +A+ET+ A+E +R+G  KLMR Y V+
Sbjct: 272 ELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVR 331

Query: 310 ACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLR 369
            CGYCPEVH+GP GH  + CGAFKHQ R+G+HGWQ AV+D++ PP YVWHV D  GPP++
Sbjct: 332 VCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQ 391

Query: 370 SALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPES-EEVDLV 416
             L+ +YG+APAVVE+C QAGA VPE Y+ TMRL++ +P S +E ++V
Sbjct: 392 RELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMV 439

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1

 Score =  310 bits (795), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 240/369 (65%), Gaps = 12/369 (3%)

Query: 54  PQNVDLPTLPPKKK--KKPYPIPIEKIRQVAKKDKRLAEMGIEKPLE-PPKNGILVPDLI 110
           P   D+P  PPK K  +KPYP P++++ + AK++K+L ++   + LE PP NG+LVP+L+
Sbjct: 41  PLYADVPK-PPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELV 99

Query: 111 HVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHS 170
            VA+ V     +L+ GL++++H +PV+ C  C+EVH+   GH I+ C G  +  R + H 
Sbjct: 100 DVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHV 159

Query: 171 WVRGSINDILLPVESYHLYDPFGR-RIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRR 229
           W RG ++D++L  + +HLYD   + R+ H+ RF   +I AV+ELCIQAGVD+ ++PS+RR
Sbjct: 160 WKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRR 219

Query: 230 TKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETM 289
           +KP+ ++  +++D     +         ++ L  +  D  C          +  ++ ETM
Sbjct: 220 SKPVYSIEGRIVDFEDVNDGNSELAVTSTTTL--IQEDDRCKE----EKKSLKELSFETM 273

Query: 290 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVD 349
           +++  +  GV KLM +Y V  CGYCPE+ +GP GH V++C A KHQ RDG H WQ+A +D
Sbjct: 274 ESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATID 333

Query: 350 EVFPPNYVWHVQDPK-GPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVP 408
           +V  P YVWHV+DP  G  L ++LKR+YGKAPAV+E+C+Q GA VP+QY   MRLD++ P
Sbjct: 334 DVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393

Query: 409 ESEEVDLVA 417
           + +EVDLVA
Sbjct: 394 QRDEVDLVA 402

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 168/336 (50%), Gaps = 31/336 (9%)

Query: 67  KKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKG 126
           ++  Y     +  ++   D R     I K +E       V +++ VA E++ A K LI  
Sbjct: 16  QRASYSTTSSRNNKLKLDDLRKLRPMILKRIENRAKDYPVKEIVPVAEEILIARKNLISN 75

Query: 127 LAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESY 186
           +A LL V PV  C  CSEV V   GH I+ C+          H WV GSINDIL+PVESY
Sbjct: 76  IAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESY 135

Query: 187 HLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGF 246
           HL++     I+H+ RFDYDR+PA++ELC QAG   PE               +++     
Sbjct: 136 HLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE---------------EILQYSEI 180

Query: 247 VEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKY 306
            + P+         +S+ D       LP     D+  +    + A+E VR+GV KL+  Y
Sbjct: 181 HDNPQ---------ISEEDIRS----LPA---GDLKYVGANALMAWEKVRAGVKKLLLVY 224

Query: 307 SVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGP 366
             K C  C EVH+GP GH  +LCG FK++   G H W+ A V+++ P   VWH +     
Sbjct: 225 PSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRPQDPV 284

Query: 367 PLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMR 402
            L    + YYG APA+V +C   GA VP +Y   M+
Sbjct: 285 VLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
356559935	438	PREDICTED: APO protein 1, chloroplastic-	0.995	0.947	0.688	1e-175
147861249	932	hypothetical protein VITISV_018985 [Viti	0.966	0.432	0.745	1e-173
356529350	438	PREDICTED: APO protein 1, chloroplastic-	0.968	0.922	0.699	1e-173
225453234	444	PREDICTED: APO protein 1, chloroplastic	0.973	0.914	0.742	1e-171
297837773	435	hypothetical protein ARALYDRAFT_475482 [	0.935	0.896	0.687	1e-164
79320742	460	APO protein 1 [Arabidopsis thaliana] gi|	0.932	0.845	0.677	1e-159
15217744	436	APO protein 1 [Arabidopsis thaliana] gi|	0.932	0.892	0.677	1e-159
449463615	443	PREDICTED: APO protein 1, chloroplastic-	0.988	0.930	0.691	1e-157
357498619	451	APO protein [Medicago truncatula] gi|355	0.964	0.891	0.656	1e-157
255559615	400	APO protein 3, mitochondrial precursor,	0.923	0.962	0.673	1e-152

>gi|356559935|ref|XP_003548251.1| PREDICTED: APO protein 1, chloroplastic-like [Glycine max]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 287/417 (68%), Positives = 342/417 (82%), Gaps = 2/417 (0%)

Query: 1   MIVVVLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLP 60
            I  +L     +   L+F C+      S      +CASRRP    +  ++K  PQN DLP
Sbjct: 24  FIRPLLSASKSYSLGLKFNCQQFCKGRSKLPGVLVCASRRPKG--TVWRRKTLPQNEDLP 81

Query: 61  TLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAW 120
            + PK KKKPYPIP ++I+Q  ++D++LA MGIEKPLEPPKNG+LVPDL+ VAYEV DAW
Sbjct: 82  PILPKNKKKPYPIPFKEIKQAGREDRKLAHMGIEKPLEPPKNGLLVPDLVPVAYEVFDAW 141

Query: 121 KLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDIL 180
           KLLI+GLAQLLHVIP +GCSECSEVHVA +GHHI++C G    +RRS H+WV+GS+NDIL
Sbjct: 142 KLLIEGLAQLLHVIPAHGCSECSEVHVAQTGHHIRDCSGTNGRQRRSSHAWVKGSVNDIL 201

Query: 181 LPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKV 240
           +P+ESYHL+DPFGRRIKH++RF+YDRIPAVVELCIQAGVDIPEYPSRRRT PIR LG++V
Sbjct: 202 VPIESYHLFDPFGRRIKHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMLGRRV 261

Query: 241 IDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVT 300
           IDRGG +EEP+PWR    S+L+D DT  A  R P PSL+D+P+IAQETM AYE V+ GV 
Sbjct: 262 IDRGGNLEEPKPWRFADPSSLNDFDTYRASERFPRPSLSDLPKIAQETMSAYETVKKGVK 321

Query: 301 KLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHV 360
           KLMRKY+VKACGYC EVH+GPWGHN KLCGAFKHQWRDGKHGWQDA VDEVFPPNYVWHV
Sbjct: 322 KLMRKYTVKACGYCTEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHV 381

Query: 361 QDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           +DP+GPPL SAL+RYYGKAPAVVEVCMQAGAQ+PE+YKP MRLDII+P++EE  ++A
Sbjct: 382 RDPRGPPLASALRRYYGKAPAVVEVCMQAGAQIPEEYKPMMRLDIIIPDTEEARMIA 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 301/404 (74%), Positives = 353/404 (87%), Gaps = 1/404 (0%)

Query: 15  HLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIP 74
            ++F+   +   +   S TFLC S++P +D +FKKQ AYPQNVDLP + PKKKKKPYPIP
Sbjct: 529 QIEFQQGQILTGQPKISGTFLCVSQKPQEDATFKKQIAYPQNVDLPPILPKKKKKPYPIP 588

Query: 75  IEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVI 134
           ++KIRQ A+ DK+LA+ GIEKPLEPPKNG++VPDL+ VAYEV+DAWK+LIKGLAQLLHVI
Sbjct: 589 LKKIRQAARDDKKLAQKGIEKPLEPPKNGLIVPDLVPVAYEVLDAWKVLIKGLAQLLHVI 648

Query: 135 PVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGR 194
           PV+GCSECSE+HVA SGHHIQ+C G ++ KRR  HSWV+GSIND+L+P+ESYHLYDPFGR
Sbjct: 649 PVHGCSECSEIHVAQSGHHIQDCTGPSSVKRRGLHSWVKGSINDVLIPIESYHLYDPFGR 708

Query: 195 RIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWR 254
           RIKHE+RF YDRIPAVVELC+QAGVD+PEYPSRRRT PIR +GKKVIDRGGFVEEP P+ 
Sbjct: 709 RIKHETRFSYDRIPAVVELCVQAGVDLPEYPSRRRTIPIRMIGKKVIDRGGFVEEPEPFH 768

Query: 255 SRGSSA-LSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGY 313
           S  SS+ L D+DT GA GR PPP L+D+PRIAQET+DAYEVVR GV KLMRKY+VKACGY
Sbjct: 769 SSDSSSLLMDIDTHGAFGRFPPPPLSDIPRIAQETIDAYEVVRWGVRKLMRKYTVKACGY 828

Query: 314 CPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK 373
           C EVH+GPWGHN KLCG FKHQWRDGKHGWQDA V+EV PPNYV+H++DPKGPPLRS LK
Sbjct: 829 CSEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATVEEVIPPNYVYHLRDPKGPPLRSGLK 888

Query: 374 RYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           R+YGKAPAVVEVCMQAGAQVP++YKP MRLDI++P++EE  LVA
Sbjct: 889 RFYGKAPAVVEVCMQAGAQVPDKYKPMMRLDIVIPDTEESRLVA 932

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529350|ref|XP_003533257.1| PREDICTED: APO protein 1, chloroplastic-like [Glycine max]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 284/406 (69%), Positives = 337/406 (83%), Gaps = 2/406 (0%)

Query: 12  FLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPY 71
           +   L+F C+      S      +CASRRP    +  ++K   QN DLP + PK KKKPY
Sbjct: 35  YSLGLKFNCQQFCKGRSTLPGVLVCASRRPKG--TIWRRKTLQQNEDLPPILPKNKKKPY 92

Query: 72  PIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLL 131
           PIP ++I+Q  ++D++LA MGIEKPLEPPKNG+LVPDLI VAYEV  AWKLLIKGLAQLL
Sbjct: 93  PIPFKEIKQAGREDRKLAHMGIEKPLEPPKNGLLVPDLIPVAYEVFGAWKLLIKGLAQLL 152

Query: 132 HVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDP 191
           HVIPV+GCSEC+EVHVA +GHHI++C G    +RRS H+WV+GS+NDIL+P+ESYHL+DP
Sbjct: 153 HVIPVHGCSECTEVHVAQTGHHIRDCSGTNGRQRRSSHAWVKGSVNDILVPIESYHLFDP 212

Query: 192 FGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPR 251
           FGRRIKH++RF+YDRIPAVVELC+QAGVDIPEYPSRRRT PIR LG++VIDRGG +EEP+
Sbjct: 213 FGRRIKHDTRFEYDRIPAVVELCVQAGVDIPEYPSRRRTNPIRILGRRVIDRGGNLEEPK 272

Query: 252 PWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKAC 311
           PWR    S+L+D DT  A  R P PSL+D+P+IAQETM AYE V+ GV KLMRKY+VKAC
Sbjct: 273 PWRFADPSSLNDFDTYRASERFPLPSLSDLPKIAQETMSAYETVKKGVKKLMRKYTVKAC 332

Query: 312 GYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSA 371
           GYC EVH+GPWGHN KLCGAFKHQWRDGKHGWQDA VDEVFPPNYVWHV+DP+GPPL SA
Sbjct: 333 GYCTEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVRDPRGPPLASA 392

Query: 372 LKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           L+RYYGKAPAVVEVCMQAGAQ+PE YKP MRLDII+P++EE  ++A
Sbjct: 393 LRRYYGKAPAVVEVCMQAGAQIPEDYKPMMRLDIIIPDTEEARMIA 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453234|ref|XP_002264685.1| PREDICTED: APO protein 1, chloroplastic [Vitis vinifera] gi|297734690|emb|CBI16741.3| unnamed protein product [Vitis vinifera]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/407 (74%), Positives = 354/407 (86%), Gaps = 1/407 (0%)

Query: 12  FLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPY 71
           +   L+F+   +   +   S TFLC S++P +D +FKKQ AYPQNVDLP + PKKKKKPY
Sbjct: 38  YTLGLKFQQGQILTGQPKISGTFLCVSQKPQEDATFKKQIAYPQNVDLPPILPKKKKKPY 97

Query: 72  PIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLL 131
           PIP++KIRQ A+ DK+LA+ GIEKPLEPPKNG++VPDL+ VAYEV+DAWK+LIKGLAQLL
Sbjct: 98  PIPLKKIRQAARDDKKLAQKGIEKPLEPPKNGLIVPDLVPVAYEVLDAWKVLIKGLAQLL 157

Query: 132 HVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDP 191
           HVIPV+GCSECSE+HVA SGHHIQ+C G ++ KRR  HSWV+GSIND+L+P+ESYHLYDP
Sbjct: 158 HVIPVHGCSECSEIHVAQSGHHIQDCTGPSSVKRRGLHSWVKGSINDVLIPIESYHLYDP 217

Query: 192 FGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPR 251
           FGRRIKHE+RF YDRIPAVVELC+QAGVD+PEYPSRRRT PIR +GKKVIDRGGFVEEP 
Sbjct: 218 FGRRIKHETRFSYDRIPAVVELCVQAGVDLPEYPSRRRTIPIRMIGKKVIDRGGFVEEPE 277

Query: 252 PWRSRGSSA-LSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKA 310
           P+ S  SS+ L D+DT GA GR PPP L+D+PRIAQET+DAYEVVR GV KLMRKY+VKA
Sbjct: 278 PFHSSDSSSLLMDIDTHGAFGRFPPPPLSDIPRIAQETIDAYEVVRWGVRKLMRKYTVKA 337

Query: 311 CGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRS 370
           CGYC EVH+GPWGHN KLCG FKHQWRDGKHGWQDA V+EV PPNYV+H++DPKGPPLRS
Sbjct: 338 CGYCSEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATVEEVIPPNYVYHLRDPKGPPLRS 397

Query: 371 ALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
            LKR+YGKAPAVVEVCMQAGAQVP++YKP MRLDI++P++EE  LVA
Sbjct: 398 GLKRFYGKAPAVVEVCMQAGAQVPDKYKPMMRLDIVIPDTEESRLVA 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837773|ref|XP_002886768.1| hypothetical protein ARALYDRAFT_475482 [Arabidopsis lyrata subsp. lyrata] gi|297332609|gb|EFH63027.1| hypothetical protein ARALYDRAFT_475482 [Arabidopsis lyrata subsp. lyrata]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 269/391 (68%), Positives = 334/391 (85%), Gaps = 1/391 (0%)

Query: 28  SMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKR 87
           SM  RT +C ++   +  SFKK+    QNVDLP + PK KKKPYP+P ++I++ A+KDK+
Sbjct: 45  SMRLRTIVCFNQNLTEHTSFKKRHVSTQNVDLPPILPKNKKKPYPVPFQQIQEEARKDKK 104

Query: 88  LAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHV 147
           LA+MGIEK LEPPKNG+LVP+L+ VAY+VID WKLLIKGLAQLLHV+PV+ CSEC  VHV
Sbjct: 105 LAQMGIEKQLEPPKNGLLVPNLVPVAYQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHV 164

Query: 148 AHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRI 207
           A++GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH++DPFGRRIKHE+RFDY+RI
Sbjct: 165 ANAGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMHDPFGRRIKHETRFDYERI 224

Query: 208 PAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRGSSALSDLDT 266
           P +VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG++ EP +P  S  SS L++LDT
Sbjct: 225 PVLVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYLREPDKPQTSSLSSPLAELDT 284

Query: 267 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 326
            GAC R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 285 LGACERHPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 344

Query: 327 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 386
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 345 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 404

Query: 387 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 405 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 435

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79320742|ref|NP_001031234.1| APO protein 1 [Arabidopsis thaliana] gi|332196172|gb|AEE34293.1| APO protein 1 [Arabidopsis thaliana]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)

Query: 29  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 88
           M   T  C +++  +  SFKK+    QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 70  MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 129

Query: 89  AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 148
           A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA
Sbjct: 130 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 189

Query: 149 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 208
           + GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 190 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 249

Query: 209 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 266
           A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT
Sbjct: 250 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 309

Query: 267 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 326
            G   R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 310 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 369

Query: 327 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 386
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 370 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 429

Query: 387 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 430 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217744|ref|NP_176661.1| APO protein 1 [Arabidopsis thaliana] gi|68565082|sp|Q9XIR4.1|APO1_ARATH RecName: Full=APO protein 1, chloroplastic; AltName: Full=Accumulation of photosystem I protein 1; AltName: Full=Protein ACCUMULATION OF PHOTOSYSTEM ONE 1; Flags: Precursor gi|5042416|gb|AAD38255.1|AC006193_11 Unknown protein [Arabidopsis thaliana] gi|42794381|gb|AAS45665.1| chloroplast APO1 [Arabidopsis thaliana] gi|110742381|dbj|BAE99113.1| hypothetical protein [Arabidopsis thaliana] gi|114213523|gb|ABI54344.1| At1g64810 [Arabidopsis thaliana] gi|332196171|gb|AEE34292.1| APO protein 1 [Arabidopsis thaliana]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)

Query: 29  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 88
           M   T  C +++  +  SFKK+    QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 46  MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 105

Query: 89  AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 148
           A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA
Sbjct: 106 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 165

Query: 149 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 208
           + GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 166 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 225

Query: 209 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 266
           A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT
Sbjct: 226 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 285

Query: 267 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 326
            G   R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 286 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 345

Query: 327 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 386
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 346 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 405

Query: 387 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 406 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463615|ref|XP_004149527.1| PREDICTED: APO protein 1, chloroplastic-like [Cucumis sativus] gi|449505817|ref|XP_004162576.1| PREDICTED: APO protein 1, chloroplastic-like [Cucumis sativus]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/412 (69%), Positives = 332/412 (80%)

Query: 6   LKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPK 65
           L  +  +    +F  + L      + RT    S+   ++   KKQ  Y QNVDLP + PK
Sbjct: 32  LSALGSYTLRPKFAHKLLSQKVPTALRTLSYTSQEYGKEPVSKKQDMYRQNVDLPAILPK 91

Query: 66  KKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIK 125
           KKKKPYPIPI++I++ A+ DK LA+ GIEKPLEP KNG+LVPDLI VA++V+DAWK+LIK
Sbjct: 92  KKKKPYPIPIKQIKRAARADKELAQRGIEKPLEPGKNGLLVPDLIPVAHQVMDAWKILIK 151

Query: 126 GLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVES 185
           GL+ LLHVIPVY C ECSEVHVAHSGHHIQ+C GAT+A RRSFHSWV GSIND+L+P+ES
Sbjct: 152 GLSHLLHVIPVYACRECSEVHVAHSGHHIQDCLGATSATRRSFHSWVTGSINDVLVPIES 211

Query: 186 YHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGG 245
           YHLYDPFGRRIKHE+RF+YDRIPAVVELCIQAGVDIPEYPSRRRTKPI+ +GKKVIDRGG
Sbjct: 212 YHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRTKPIQMIGKKVIDRGG 271

Query: 246 FVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRK 305
            +EEP+PW+S  S  L D DT GA  R  PP   DVPRIAQET+ AYE VR GV  LM+K
Sbjct: 272 NMEEPKPWKSCDSYPLLDFDTQGAPQRFAPPLPEDVPRIAQETIAAYETVRYGVRMLMKK 331

Query: 306 YSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKG 365
           Y+VKACGYCPEVH+GPWGHN KLCG FKHQWRDGKHGWQDA +DEV P NYVWHV+DPKG
Sbjct: 332 YTVKACGYCPEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATLDEVLPRNYVWHVRDPKG 391

Query: 366 PPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           PPL   LKR+YGKAPAVVEVC+QAGA +P++Y P MRLDI++P+SEE   VA
Sbjct: 392 PPLIGTLKRFYGKAPAVVEVCIQAGATIPKKYLPMMRLDIVLPDSEEARSVA 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498619|ref|XP_003619598.1| APO protein [Medicago truncatula] gi|355494613|gb|AES75816.1| APO protein [Medicago truncatula]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/402 (65%), Positives = 328/402 (81%)

Query: 16  LQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPI 75
            +F+C+      S      LC +R+   D    ++    QNVD P   PK KKKPYPIP 
Sbjct: 50  FKFKCQQFDKCRSALPGVILCGNRKLRPDEFVWRRNESTQNVDFPPKLPKGKKKPYPIPF 109

Query: 76  EKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIP 135
           ++I+  AK +++LA  GIEKPLEPPKNG+LVPDL+ VAYEV DAWKLLIKGL+QLLHVIP
Sbjct: 110 KQIKHAAKMERKLASKGIEKPLEPPKNGLLVPDLVPVAYEVFDAWKLLIKGLSQLLHVIP 169

Query: 136 VYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRR 195
            YGCSECSEVHVA +GH I +C+G T++ R S H+WVRG++NDIL+P+ESYHL+DPFG+R
Sbjct: 170 AYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAWVRGNVNDILVPIESYHLFDPFGKR 229

Query: 196 IKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRS 255
           I H++RF+YDRIPAVVELCIQAGVDIPEYPSRRRT PIR +G++V+DRGG +EEP+P R+
Sbjct: 230 IMHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMVGRRVLDRGGHLEEPKPLRT 289

Query: 256 RGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCP 315
              S++ D DT  AC R PPP L+DVP+IAQET+DAY+ VR GV KLM+KY+VKACGYC 
Sbjct: 290 AEFSSVIDFDTYRACERFPPPPLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCS 349

Query: 316 EVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRY 375
           EVH+GPWGHN KLCG+FKHQWRDGKHGWQDA +DEV PPNYVWHV+D  GPP+++ALKRY
Sbjct: 350 EVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRY 409

Query: 376 YGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           YGKAPAVVEVC+QAGA++P +YKP MRLDI++P+++E  ++A
Sbjct: 410 YGKAPAVVEVCVQAGARIPAEYKPLMRLDIVIPDTDEAGMIA 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559615|ref|XP_002520827.1| APO protein 3, mitochondrial precursor, putative [Ricinus communis] gi|223539958|gb|EEF41536.1| APO protein 3, mitochondrial precursor, putative [Ricinus communis]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/404 (67%), Positives = 323/404 (79%), Gaps = 19/404 (4%)

Query: 14  FHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPI 73
             L+F  + LQ      S+TF+CA +RP Q  +  KQ++YPQNVDLP + PKKKKKPYPI
Sbjct: 16  LRLKFGLQQLQKGVPQISKTFICAYQRPRQKQNVNKQESYPQNVDLPPILPKKKKKPYPI 75

Query: 74  PIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHV 133
           P   I++ A++DK+LAEMGIEKPLEPPKNG+L     H+++  I A              
Sbjct: 76  PFRLIQKAARRDKKLAEMGIEKPLEPPKNGLLELHSSHMSFLYILA-------------- 121

Query: 134 IPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFG 193
                 +ECSEVHVAH+GH IQ+C G T+AKR SFHSW++GSI+D+L+PVESYHLYDPFG
Sbjct: 122 -----GNECSEVHVAHTGHCIQDCLGQTSAKRHSFHSWIKGSIDDVLVPVESYHLYDPFG 176

Query: 194 RRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPW 253
           RRIKHE+RFDYDRIPAVVELCIQAGVD PEYPSRRRT P+R +GKKVIDRGG+VEEP PW
Sbjct: 177 RRIKHETRFDYDRIPAVVELCIQAGVDKPEYPSRRRTNPVRMIGKKVIDRGGYVEEPTPW 236

Query: 254 RSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGY 313
           RS   +A  D DT  AC R  PPSL  VPRIAQET+DA+E+VRSGV KLMRKY+VKACGY
Sbjct: 237 RSGNPTAPIDFDTYRACERFSPPSLEYVPRIAQETIDAFEIVRSGVRKLMRKYTVKACGY 296

Query: 314 CPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK 373
           C EVH+GPWGHNVKLCG FKHQWRDGKHGWQDA ++EVFPP YVWHV+DPKGPPL+ ALK
Sbjct: 297 CSEVHVGPWGHNVKLCGEFKHQWRDGKHGWQDATLEEVFPPKYVWHVRDPKGPPLKGALK 356

Query: 374 RYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           ++YGKAPAVVE+CMQAGA++PE+YKP MRLDI++PE++E  LVA
Sbjct: 357 KFYGKAPAVVEMCMQAGAEIPEKYKPMMRLDIMIPETDEAKLVA 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2010906	460	APO1 "ACCUMULATION OF PHOTOSYS	0.923	0.836	0.653	4.2e-143
TAIR|locus:2156151	402	APO3 "ACCUMULATION OF PHOTOSYS	0.786	0.815	0.439	7.1e-77
TAIR|locus:2093069	337	APO4 "AT3G21740" [Arabidopsis	0.328	0.406	0.463	6.9e-53

TAIR|locus:2010906 APO1 "ACCUMULATION OF PHOTOSYSTEM ONE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 253/387 (65%), Positives = 315/387 (81%)

Query:    33 TFLCASRRPLQDLSFKKQKAYPQNVDLPTLXXXXXXXXXXXXXXXXRQVAKKDKRLAEMG 92
             T  C +++  +  SFKK+    QNVDLP +                ++ A+KDK+LA+MG
Sbjct:    74 TVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMG 133

Query:    93 IEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGH 152
             IEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA+ GH
Sbjct:   134 IEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGH 193

Query:   153 HIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVE 212
             +I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIPA+VE
Sbjct:   194 NIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVE 253

Query:   213 LCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDTDGAC 270
             LCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT G  
Sbjct:   254 LCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVF 313

Query:   271 GRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCG 330
              R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+VKLCG
Sbjct:   314 ERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCG 373

Query:   331 AFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAG 390
              FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+CM +G
Sbjct:   374 EFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSG 433

Query:   391 AQVPEQYKPTMRLDIIVPESEEVDLVA 417
             A+VP++YK  MRLDIIVP+S+E D+VA
Sbjct:   434 ARVPQRYKAMMRLDIIVPDSQEADMVA 460

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2156151 APO3 "ACCUMULATION OF PHOTOSYSTEM ONE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 150/341 (43%), Positives = 227/341 (66%)

Query:    82 AKKDKRLAEMGIEKPLE-PPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCS 140
             AK++K+L ++   + LE PP NG+LVP+L+ VA+ V     +L+ GL++++H +PV+ C 
Sbjct:    70 AKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCR 129

Query:   141 ECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGR-RIKHE 199
              C+EVH+   GH I+ C G  +  R + H W RG ++D++L  + +HLYD   + R+ H+
Sbjct:   130 LCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHD 189

Query:   200 SRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSR--G 257
              RF   +I AV+ELCIQAGVD+ ++PS+RR+KP+ ++  +++D   F E+     S    
Sbjct:   190 ERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVD---F-EDVNDGNSELAV 245

Query:   258 SSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEV 317
             +S  + +  D  C +    SL +   ++ ETM+++  +  GV KLM +Y V  CGYCPE+
Sbjct:   246 TSTTTLIQEDDRC-KEEKKSLKE---LSFETMESWFEMVLGVRKLMERYRVWTCGYCPEI 301

Query:   318 HIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPK-GPPLRSALKRYY 376
              +GP GH V++C A KHQ RDG H WQ+A +D+V  P YVWHV+DP  G  L ++LKR+Y
Sbjct:   302 QVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFY 361

Query:   377 GKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
             GKAPAV+E+C+Q GA VP+QY   MRLD++ P+ +EVDLVA
Sbjct:   362 GKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 402

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093069 APO4 "AT3G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 64/138 (46%), Positives = 83/138 (60%)

Query:    86 KRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEV 145
             ++L  M I K +E       V +++ VA E++ A K LI  +A LL V PV  C  CSEV
Sbjct:    36 RKLRPM-ILKRIENRAKDYPVKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEV 94

Query:   146 HVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYD 205
              V   GH I+ C+          H WV GSINDIL+PVESYHL++     I+H+ RFDYD
Sbjct:    95 FVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYD 154

Query:   206 RIPAVVELCIQAGVDIPE 223
             R+PA++ELC QAG   PE
Sbjct:   155 RVPAILELCCQAGAIHPE 172

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIR4	APO1_ARATH	No assigned EC number	0.6777	0.9328	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
PLN00111	399	PLN00111, PLN00111, accumulation of photosystem on	0.0
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	4e-92
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	4e-25

>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional

 Score =  626 bits (1617), Expect = 0.0
 Identities = 218/401 (54%), Positives = 286/401 (71%), Gaps = 2/401 (0%)

Query: 17  QFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIE 76
                     +   S +F C+S+   + LS   +  YPQN DLP    K++KKPYP P++
Sbjct: 1   LLPSSIPSLRKLKLSLSFRCSSQLHRRKLSSVIRSEYPQNADLPRPYSKREKKPYPRPMK 60

Query: 77  KIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPV 136
            +R+ A++ K+L ++  E+PL+PPKNG+LV  L+ VA+EV  A KLLI G+++LL V+PV
Sbjct: 61  LLRREAREKKKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPV 120

Query: 137 YGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRI 196
           + C  CSEVHV   GH I+ C+G  +  R   H W+ GS+ D+L+PVESYHLYD FG+RI
Sbjct: 121 HACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRI 180

Query: 197 KHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSR 256
           KH+ RFD  RIPA+VELCIQAGVDIPEYP++RRTKPI  +G +++D     EEP P    
Sbjct: 181 KHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEG 240

Query: 257 GSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPE 316
            SS L     D       P S  ++  +A+ET++A+E VRSGV KLMRKY VK CGYCPE
Sbjct: 241 PSSPLLTELDD--SEIEAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPE 298

Query: 317 VHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYY 376
           VH+GP GH V+LCGAFKHQ RDG+HGWQ+A VD++ PPNYVWHV+D  GPPL + L+RYY
Sbjct: 299 VHVGPSGHKVRLCGAFKHQQRDGQHGWQEATVDDLVPPNYVWHVRDQDGPPLVNELRRYY 358

Query: 377 GKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 417
           GKAPAVVE+C+QAGA VP++YK  MRLD+++P+S+E DLVA
Sbjct: 359 GKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLVA 399

Length = 399

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score =  276 bits (707), Expect = 4e-92
 Identities = 112/208 (53%), Positives = 158/208 (75%), Gaps = 1/208 (0%)

Query: 35  LCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIE 94
           LC+ +      S ++ +  PQN DLP   PK++KKPYP+P++++ + AK++K+L +M   
Sbjct: 1   LCSRQELRGSTSVQRNE-SPQNADLPKPYPKREKKPYPMPLKRLIRRAKEEKKLRKMKPC 59

Query: 95  KPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHI 154
           + L PPKNG+LV +L+ VA EV +A +LLIKGL++LL V+PV+ C  C EVHV   GH I
Sbjct: 60  RVLYPPKNGLLVKELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHEI 119

Query: 155 QNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELC 214
           + C+G  +++R   H WV G+IND+L+PVESYHLYD FG+RIKH+ RFD  R+PAV+ELC
Sbjct: 120 RTCKGPGSSQRNGLHEWVPGTINDVLVPVESYHLYDRFGKRIKHDERFDVPRVPAVLELC 179

Query: 215 IQAGVDIPEYPSRRRTKPIRTLGKKVID 242
           IQAGVDIPEYP++RRTKPI ++GK+++D
Sbjct: 180 IQAGVDIPEYPAKRRTKPIYSIGKEIVD 207

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score =  101 bits (253), Expect = 4e-25
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 219 VDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSL 278
            D+P+   +R  KP     K++I R    EE +            L     C  L PP  
Sbjct: 22  ADLPKPYPKREKKPYPMPLKRLIRRAK--EEKK------------LRKMKPCRVLYPPKN 67

Query: 279 AD-VPRI---AQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKH 334
              V  +   A+E  +A E++  G+++L++   V  C +CPEVH+G  GH ++ C     
Sbjct: 68  GLLVKELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHEIRTCKGPGS 127

Query: 335 QWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVP 394
             R+G H W    +++V  P   +H+ D  G  ++   +    + PAV+E+C+QAG  +P
Sbjct: 128 SQRNGLHEWVPGTINDVLVPVESYHLYDRFGKRIKHDERFDVPRVPAVLELCIQAGVDIP 187

Query: 395 EQYKPTMRLDIIVPESEEVD 414
           E         I     E VD
Sbjct: 188 EYPAKRRTKPIYSIGKEIVD 207

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
PLN00111	399	accumulation of photosystem one; Provisional	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PLN00111	399	accumulation of photosystem one; Provisional	100.0

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=5.6e-155  Score=1152.67  Aligned_cols=397  Identities=55%  Similarity=0.994  Sum_probs=377.4

Q ss_pred             echhhhhcccccccceeeeecCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q 014845           18 FRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPL   97 (417)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlP~~~~k~~rKP~~~p~k~lir~ar~e~~~~~~~p~~~l   97 (417)
                      +...+....+..++.++.|.+........+..++++|||+|+|++++|++||||+|||++++|+||+++++++++|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~~~l   81 (399)
T PLN00111          2 LPSSIPSLRKLKLSLSFRCSSQLHRRKLSSVIRSEYPQNADLPRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERPL   81 (399)
T ss_pred             ccccccccccceeeeeeeecccccccccceeecccCCcccccCCCCCchhcCCCCccHHHHHHHHHHHhhhhhcCCCccC
Confidence            34556667778889999999998888888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccC
Q 014845           98 EPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSIN  177 (417)
Q Consensus        98 epP~NgLLv~~LipvA~evl~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~ir~C~g~k~~~R~g~H~W~~a~v~  177 (417)
                      +||+|||||++|++||++||+||++|++||+|||++|||++|+||+|||||++||+||||+|++|++|||+|+|++|+||
T Consensus        82 ~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~  161 (399)
T PLN00111         82 DPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVE  161 (399)
T ss_pred             CCCccCccccccHHHHHHHHHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCeeeeeeCCCCCcccccccccCCCcchhhhhHhhcCCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCC-
Q 014845          178 DILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSR-  256 (417)
Q Consensus       178 Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~riPAVVELCiQAGvdiPe~p~krr~kP~~~i~k~i~~~~~~~~~~~~~~~~-  256 (417)
                      |||+|+|+|||+|++|++|.||+||+|||||||||||||||||+|+||++||++|+++++++++|+++++++++++++. 
T Consensus       162 Dvl~P~e~~Hl~D~~g~~i~h~~Rf~y~riPAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~~~~~~~~  241 (399)
T PLN00111        162 DVLVPVESYHLYDRFGKRIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGP  241 (399)
T ss_pred             ceeccceeeEeccCCCcccccccccccCcccHHHHHHHHcCCCCCccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999974 


Q ss_pred             CCCCCccCccCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccc
Q 014845          257 GSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQW  336 (417)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~pp~~~el~~vA~e~l~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~  336 (417)
                      ...++.+.+....   ..+.+.+||++||+|||+||+.|++||++||++|+|++|||||||||||+||++|+|+|||||+
T Consensus       242 ~~~~~~e~~~~~~---~~~~~~~~l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~C~~~k~q~  318 (399)
T PLN00111        242 SSPLLTELDDSEI---EAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQ  318 (399)
T ss_pred             ccccccccccccc---cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeeecCCchhcc
Confidence            3344444443322   3333678999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceecccCccCCCCeeeeccCCCCCccccchhhhcCCCchhhhhHHHcCCCCCCCCcccccccccCCCCcccccc
Q 014845          337 RDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLV  416 (417)
Q Consensus       337 R~g~H~W~~a~vdDvlpP~~vwHl~d~~g~~l~~e~R~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~p~~~e~~~v  416 (417)
                      |||+|+||+|+|||||||+||||++|++|++|.||+||||||||||||||+||||+||++|+||||+|++||++||++||
T Consensus       319 r~g~H~Wq~a~vdDlvpP~~vwH~~d~~~~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRldv~~P~~~E~~lv  398 (399)
T PLN00111        319 RDGQHGWQEATVDDLVPPNYVWHVRDQDGPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLV  398 (399)
T ss_pred             cCCcccccccccccccCCceeEecCCCCCCcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhccccCCCcchhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 014845          417 A  417 (417)
Q Consensus       417 ~  417 (417)
                      |
T Consensus       399 a  399 (399)
T PLN00111        399 A  399 (399)
T ss_pred             C
Confidence            7

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=1.2e-87  Score=624.61  Aligned_cols=195  Identities=50%  Similarity=0.960  Sum_probs=191.9

Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 014845           48 KKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGL  127 (417)
Q Consensus        48 ~~~~~~~~~~DlP~~~~k~~rKP~~~p~k~lir~ar~e~~~~~~~p~~~lepP~NgLLv~~LipvA~evl~A~~~L~~Gv  127 (417)
                      ...+++|||+|||+.++|+||||||+|||+|+++||+|+++++++|+++|+||+|||||++|++||++||+||++|++||
T Consensus        10 ~~~~~~~~~~d~P~~~~k~ekKp~p~p~k~l~~~are~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv   89 (204)
T PF05634_consen   10 VIRNESPQNADLPRPLPKSEKKPYPTPIKELIRRAREERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWETLISGV   89 (204)
T ss_pred             hhcccCCccccCCCcCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccCccccCCeeeeeeCCCCCcccccccccCCCc
Q 014845          128 AQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRI  207 (417)
Q Consensus       128 ~kLm~v~pV~~C~~C~EVHVG~~GH~ir~C~g~k~~~R~g~H~W~~a~v~Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~ri  207 (417)
                      +|||++|||++||||||||||++||+||||+|++|++|||+|+|++|+|||||+|+|+|||+|++|++|.||+|||||||
T Consensus        90 ~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R~~y~ri  169 (204)
T PF05634_consen   90 KKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEERFYYGRI  169 (204)
T ss_pred             HHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHhhcCCCCCCCCCCCCCCCeeeccceeee
Q 014845          208 PAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVID  242 (417)
Q Consensus       208 PAVVELCiQAGvdiPe~p~krr~kP~~~i~k~i~~  242 (417)
                      ||||||||||||++|+||++||+||+++|+|+++|
T Consensus       170 PAVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd  204 (204)
T PF05634_consen  170 PAVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD  204 (204)
T ss_pred             chHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence            99999999999999999999999999999999885

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=6.8e-67  Score=485.85  Aligned_cols=175  Identities=45%  Similarity=0.831  Sum_probs=165.1

Q ss_pred             CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 014845          218 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE  293 (417)
Q Consensus       218 GvdiPe~p~krr~kP~~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~  293 (417)
                      -+|+|...+|+++||+++|+++|+.++++              .+++.+.+.++.+.||+    +++|++||++||+||+
T Consensus        18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are--------------~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~   83 (204)
T PF05634_consen   18 NADLPRPLPKSEKKPYPTPIKELIRRARE--------------ERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWE   83 (204)
T ss_pred             cccCCCcCCccccCCCCccHHHHHHHHHH--------------HHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999976664              34577788888898988    8999999999999999


Q ss_pred             HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 014845          294 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK  373 (417)
Q Consensus       294 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDvlpP~~vwHl~d~~g~~l~~e~R  373 (417)
                      .|++||+|||++|||++|||||||||||+||++|||+|||||+|||+|+||+|+|||||||+|||||+|++|++|.||+|
T Consensus        84 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R  163 (204)
T PF05634_consen   84 TLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEER  163 (204)
T ss_pred             HHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhhhHHHcCCCCCCCCcccccccccC
Q 014845          374 RYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIV  407 (417)
Q Consensus       374 ~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~  407 (417)
                      |||||||||||||+||||++|+ |.+|||..-++
T Consensus       164 ~~y~riPAVVELCiQAGa~vPe-ypt~rR~kPv~  196 (204)
T PF05634_consen  164 FYYGRIPAVVELCIQAGADVPE-YPTKRRTKPVY  196 (204)
T ss_pred             cccCccchHHHHHHhhCCcCCc-ccccccccceE
Confidence            9999999999999999999995 99999876554

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=1.7e-58  Score=461.32  Aligned_cols=165  Identities=30%  Similarity=0.514  Sum_probs=157.4

Q ss_pred             CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 014845          218 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE  293 (417)
Q Consensus       218 GvdiPe~p~krr~kP~~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~  293 (417)
                      -+|+|.+.+|+.+|||++|++.++..+++              .+.+.++++++.++||+    +++|++||++||+||+
T Consensus        40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~--------------~~~~~~~~~~~~l~pP~NGllV~~LvpvA~ev~~A~~  105 (399)
T PLN00111         40 NADLPRPYSKREKKPYPRPMKLLRREARE--------------KKKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKARK  105 (399)
T ss_pred             ccccCCCCCchhcCCCCccHHHHHHHHHH--------------HhhhhhcCCCccCCCCccCccccccHHHHHHHHHHHH
Confidence            58999999999999999999999966664              33467778889998888    8999999999999999


Q ss_pred             HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 014845          294 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK  373 (417)
Q Consensus       294 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDvlpP~~vwHl~d~~g~~l~~e~R  373 (417)
                      .|++||+|||++|||++|+|||||||||+||+||||+|+|||+|||+|+|++|+|||||+|+|+|||+|++|++|.|++|
T Consensus       106 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~i~h~~R  185 (399)
T PLN00111        106 LLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRIKHDER  185 (399)
T ss_pred             HHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhhhHHHcCCCCCCC
Q 014845          374 RYYGKAPAVVEVCMQAGAQVPEQ  396 (417)
Q Consensus       374 ~~ygr~PAVVELCiQAGa~vP~~  396 (417)
                      |||||||||||||+||||++|+.
T Consensus       186 f~y~riPAVvELCiQAGa~vPey  208 (399)
T PLN00111        186 FDVPRIPAIVELCIQAGVDIPEY  208 (399)
T ss_pred             cccCcccHHHHHHHHcCCCCCcc
Confidence            99999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 37/270 (13%), Positives = 83/270 (30%), Gaps = 78/270 (28%)

Query: 5   VLKIIVGFLFHLQFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAY-------PQNV 57
            L II   +       ++ ++       T + +S   L  L   + +         P + 
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSA 385

Query: 58  DLPTLPPKKKKKPYPI-----PIEKIRQVAKK--DKRLAEMGIEKPLEPPKNGIL-VPDL 109
            +PT           +         +  V  K     L E       + PK   + +P +
Sbjct: 386 HIPT-------ILLSLIWFDVIKSDVMVVVNKLHKYSLVE-------KQPKESTISIPSI 431

Query: 110 IHVAYEVIDAWKLLIKGLAQLLH--VIPVYGCSECSEVH-----------VAHSGHHIQN 156
            ++        K+ ++    L H  ++  Y   +  +              +H GHH++N
Sbjct: 432 -YLEL------KVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 157 CQGA---------------TAAK-RRSFHSW-VRGSINDILLPVESYHLYDPFGRRI-KH 198
            +                    K R    +W   GSI + L  ++ Y  Y      I  +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY------ICDN 537

Query: 199 ESRFDYDRIPAVVELCIQAGVDIPEYPSRR 228
           + +++   + A+++   +   ++       
Sbjct: 538 DPKYE-RLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 63/428 (14%), Positives = 118/428 (27%), Gaps = 100/428 (23%)

Query: 20  CEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIR 79
            +H+  ++   S T      R    L  K+++   + V+      +  +  Y   +  I+
Sbjct: 51  IDHIIMSKDAVSGT-----LRLFWTLLSKQEEMVQKFVE------EVLRINYKFLMSPIK 99

Query: 80  QVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHV--IPVY 137
              ++   +  M IE+  +   N   V    +V+      +  L + L +L     + + 
Sbjct: 100 TEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAKNVLID 156

Query: 138 GCSECSEVHVAHSGHH---IQNCQGATAAKRRSFH-SWVRGSINDILLPVESYHLYDPFG 193
           G        V  SG     +  C       +  F   W+                     
Sbjct: 157 G--------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------------------LK 190

Query: 194 RRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPW 253
                E       +  + +L  Q   +            +R    +   R     +P   
Sbjct: 191 NCNSPE-----TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE- 244

Query: 254 RSRGSSALSDLDT----------DGACGRL---PPPSLADVPRIAQETMDAYEVVRSGVT 300
                + L  L            + +C  L       + D    A  T  + +     +T
Sbjct: 245 -----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 301 K-----LMRKY-SVKACGYCPEVH-IGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFP 353
                 L+ KY   +      EV    P    + +        RDG   W          
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESI---RDGLATWD--------- 345

Query: 354 PNYVWHVQDPKGPPLRSALKRYYGK-APAVVEVCMQAGAQVPEQYK-PTMRLDII--VPE 409
            N+  HV   K   L + ++       PA         +  P     PT+ L +I     
Sbjct: 346 -NWK-HVNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 410 SEEVDLVA 417
             +V +V 
Sbjct: 401 KSDVMVVV 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00