Citrus Sinensis ID: 014863
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.856 | 0.604 | 0.871 | 0.0 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.966 | 0.693 | 0.786 | 0.0 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.928 | 0.650 | 0.771 | 1e-180 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.810 | 0.584 | 0.872 | 1e-175 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.654 | 0.679 | 0.336 | 3e-36 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.678 | 0.700 | 0.334 | 4e-35 | |
| P06168 | 395 | Ketol-acid reductoisomera | yes | no | 0.609 | 0.643 | 0.318 | 8e-30 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.498 | 0.615 | 0.351 | 2e-28 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.491 | 0.621 | 0.347 | 5e-28 | |
| Q8DW43 | 340 | Ketol-acid reductoisomera | yes | no | 0.510 | 0.626 | 0.345 | 5e-28 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/357 (87%), Positives = 331/357 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 417
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/413 (78%), Positives = 352/413 (85%), Gaps = 10/413 (2%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSAL 56
MAA T S I S SS+TL + + NL+ + +S+RA ++ T GSAL
Sbjct: 1 MAAVTSSCSTAI-----SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSAL 54
Query: 57 SAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGV 116
A S P LDFETSVFKK+ ++LA +EYIVRGGRDLF+LLPDAF GI QIGV
Sbjct: 55 GATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGV 114
Query: 117 IGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176
IGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETI
Sbjct: 115 IGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETI 174
Query: 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236
SGSDLVLLLISD+AQADNYEKIFS +KPNSILGLSHGFLLGHLQS+GLDFPKN VIAVC
Sbjct: 175 SGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVC 234
Query: 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 296
PKGMGPSVRRLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQ
Sbjct: 235 PKGMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 294
Query: 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGML 356
EY+SDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGML
Sbjct: 295 EYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGML 354
Query: 357 AVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
AVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 355 AVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFY 407
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/407 (77%), Positives = 349/407 (85%), Gaps = 20/407 (4%)
Query: 14 KFSPSPSSETLKEALKHLNLASF--SSTAKSLRALKTT-------TGRGSALSAWMASET 64
K SP PS+ LNL SST K+ R+LK G GSALSA M S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI 302
SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316
Query: 303 FGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSF 362
FGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS
Sbjct: 317 FGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSL 376
Query: 363 SGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 377 SEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFY 423
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 615 bits (1587), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/338 (87%), Positives = 318/338 (94%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 307
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 308 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 367
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 368 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFY 405
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 155/291 (53%), Gaps = 18/291 (6%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171
+ + +IG+GSQG Q NLRD+ + V VG+RK +S+ +A G+ L D
Sbjct: 84 DTLALIGYGSQGHGQGLNLRDN------GLNVIVGVRKNGKSWEDAIQDGWVP-GKNLFD 136
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
+ E IS +V+ L+SDAAQ++ + I + L SHGF ++ P ++
Sbjct: 137 VDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVD 196
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+ VA+GS + +
Sbjct: 197 VILVAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYE 251
Query: 292 TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIS 351
TT E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 TTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIG 311
Query: 352 TQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
GM ++++ S ++ ++ + + P LY+ V G E +
Sbjct: 312 AHGMDWMFDACSTTARRGAIDWTPKFKDALKPVFNNLYDS---VKNGDETK 359
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 156/296 (52%), Gaps = 13/296 (4%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
+ +I G+ ++ + S ++ ++L E Y++V G+E +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAK 360
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P06168|ILV5_YEAST Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 140/276 (50%), Gaps = 22/276 (7%)
Query: 129 NLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188
NLRD+ + V +G+RK S+ A G+ L + + I V+ L+SD
Sbjct: 95 NLRDN------GLNVIIGVRKDGASWKAAIEDGWVP-GKNLFTVEDAIKRGSYVMNLLSD 147
Query: 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248
AAQ++ + I + L SHGF ++ PK++ VI V PKG G +VR L+
Sbjct: 148 AAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTHVEPPKDLDVILVAPKGSGRTVRSLF 207
Query: 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308
+G+ GINSS+AV DV G+A A +VA+GS + + TT E+E SD++GERG
Sbjct: 208 KEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGC 262
Query: 309 LLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK 368
L+G +HG+ + + ENG + A+ TVE T + +I GM +Y++ S ++
Sbjct: 263 LMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARR 322
Query: 369 EFEKAYSASYYPCME-----ILYECYEDVAAGSEIR 399
+ +YP + + + YE G+E +
Sbjct: 323 G-----ALDWYPIFKNALKPVFQDLYESTKNGTETK 353
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 25/233 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
T + E +D+FGE+ +L G ++++ F E G +LAY EC+
Sbjct: 179 IETNFKDETETDLFGEQAVLCGGSAELIKAGFDTLVEGGYPAELAY---FECM 228
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 31/236 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
TT ++E +D+FGE+ +L G ++++ F E G ++AY EC+
Sbjct: 178 GVIKTTFKEETETDLFGEQAVLCGGTTSLIKAGFETLVEAGYQPEIAY---FECLN 230
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 33/246 (13%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171
+I VIG+GSQG A AQNLRDS D+++ G+R G +SF +A+ GF D
Sbjct: 19 KKIAVIGYGSQGHAHAQNLRDS----GHDVII--GVRHG-KSFDKAKEDGF--------D 63
Query: 172 IYETISGS---DLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLL--GHLQSMGLD 225
YE + D++++L D Q D Y ++I + LG +HGF + G++++
Sbjct: 64 TYEVGEATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA---- 119
Query: 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG 285
P+++ V V PKG G VRR Y +G G+ S +AV+Q+ G A N+AL W+ +G
Sbjct: 120 -PEDVDVFMVAPKGPGHLVRRTYTEG-----FGVPSLYAVYQNPTGNAENIALDWAKGIG 173
Query: 286 SPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
S TT ++E D+FGE+ +L+G + ++E+ F TE G LAY + +
Sbjct: 174 SARVGLLVTTFKEETEEDLFGEQAVLMGGLTHLIEAGFEVLTEAGYAPQLAYFEVLHEMK 233
Query: 344 GIISKI 349
I+ I
Sbjct: 234 LIVDLI 239
|
Streptococcus mutans (taxid: 1309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | ||||||
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.971 | 0.693 | 0.807 | 0.0 | |
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.932 | 0.661 | 0.833 | 0.0 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.899 | 0.636 | 0.841 | 0.0 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.906 | 0.643 | 0.842 | 0.0 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.906 | 0.645 | 0.842 | 0.0 | |
| 356543900 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.906 | 0.645 | 0.840 | 0.0 | |
| 449438145 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.971 | 0.688 | 0.792 | 0.0 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.856 | 0.601 | 0.876 | 0.0 | |
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.935 | 0.664 | 0.826 | 0.0 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.856 | 0.604 | 0.871 | 0.0 |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/411 (80%), Positives = 357/411 (86%), Gaps = 6/411 (1%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSST---AKSLRALKTTTGRGSALSAW 59
+AT FS +PK P+P T K +L++ +KS ++L+ G GSA+ A
Sbjct: 2 SATASFSATLPK--PTPFLSTPKSISSSSSLSTLGFLSIRSKSFKSLRANGGGGSAVGAC 59
Query: 60 -MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIG 118
M S A+K LDFET+VFKK+ ISLA DEYIVRGGRDLF LLPDAF GI QIGVIG
Sbjct: 60 SMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGRDLFKLLPDAFKGIKQIGVIG 119
Query: 119 WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178
WGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR+AGFTEENGTLGDI+ET+SG
Sbjct: 120 WGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEARSAGFTEENGTLGDIWETVSG 179
Query: 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238
SDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPK
Sbjct: 180 SDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPK 239
Query: 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298
GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY
Sbjct: 240 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEY 299
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+SDIFGERGILLGAVHGIVESLFRR+TENGM+ED AYKNTVECITGIISK ISTQGMLAV
Sbjct: 300 KSDIFGERGILLGAVHGIVESLFRRYTENGMSEDEAYKNTVECITGIISKTISTQGMLAV 359
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
YNS S E KK+FE AYSASYYPCM+ILYECYEDVA GSEIRSVVLAGRRFY
Sbjct: 360 YNSLSEEGKKQFETAYSASYYPCMDILYECYEDVACGSEIRSVVLAGRRFY 410
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/396 (83%), Positives = 357/396 (90%), Gaps = 7/396 (1%)
Query: 21 SETLKEALKHL--NLASFSSTA-KSLRA--LKTTT--GRGSALSAWMASETALKTPFLLD 73
++TLK +L NL SS A +SLRA L T++ G GSAL+A M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DEYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV 313
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAV
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 318
Query: 314 HGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TE+G +EDLAYKNTVECITGIISK ISTQGMLAVYN+ S + KKEFE A
Sbjct: 319 HGIVESLFRRYTEHGTSEDLAYKNTVECITGIISKTISTQGMLAVYNALSEDGKKEFEAA 378
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
YSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 379 YSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFY 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/378 (84%), Positives = 342/378 (90%), Gaps = 3/378 (0%)
Query: 35 SFSSTAKSLRALKTTTGR--GSALSAWMASETALKTPFL-LDFETSVFKKDMISLADRDE 91
S S ++K+ + LK + G G L A M S P + LDFETSVFKK+ +SLA DE
Sbjct: 38 SSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLAGHDE 97
Query: 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151
YIVRGGRDLF+LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GLRKGS
Sbjct: 98 YIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGS 157
Query: 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211
RSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLS
Sbjct: 158 RSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLS 217
Query: 212 HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271
HGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDG
Sbjct: 218 HGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDG 277
Query: 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNE 331
RAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+E
Sbjct: 278 RATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSE 337
Query: 332 DLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYED 391
D AYKNTVECITGIIS+ IST+GMLAVYNS + E KKEFE AYSAS+YPCM+ILYECYED
Sbjct: 338 DEAYKNTVECITGIISRTISTKGMLAVYNSLTPEGKKEFETAYSASFYPCMDILYECYED 397
Query: 392 VAAGSEIRSVVLAGRRFY 409
VA+GSEIRSVVLAGRRFY
Sbjct: 398 VASGSEIRSVVLAGRRFY 415
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/382 (84%), Positives = 349/382 (91%), Gaps = 4/382 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFY 409
CYEDVA+GSEIRSVVLAGRRFY
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFY 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/382 (84%), Positives = 349/382 (91%), Gaps = 4/382 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFY 409
CYEDVA+GSEIRSVVLAGRRFY
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFY 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/382 (84%), Positives = 349/382 (91%), Gaps = 4/382 (1%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SL+ + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+T+N
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTDN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSASYYPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASYYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFY 409
CYEDVA+GSEIRSVVLAGRRFY
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFY 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438145|ref|XP_004136850.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] gi|449526744|ref|XP_004170373.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/419 (79%), Positives = 359/419 (85%), Gaps = 14/419 (3%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSSTAKS-----LRALKTT-----T 50
MAAAT F+ P S S S++TLK A LA S + S L ALK
Sbjct: 1 MAAATTHFA---PSISAS-SAKTLKHAAALHPLAPSSLSFLSSSSSGLNALKAVGISAAN 56
Query: 51 GRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
G GSAL A M S A+K LDF+TSVFKK+ ++LA DEYIVRGGRDLF LLP+AF G
Sbjct: 57 GIGSALGARMVSVPAIKPLISLDFDTSVFKKEKVNLAGHDEYIVRGGRDLFPLLPEAFKG 116
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I +IGVIGWGSQ PAQAQNLRDSLAEAKSDIVVK+GLRKGSRSFAEARA GF+EENGTLG
Sbjct: 117 IKKIGVIGWGSQAPAQAQNLRDSLAEAKSDIVVKIGLRKGSRSFAEARAVGFSEENGTLG 176
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI 230
DIYETIS SDLV+LLISD+AQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI
Sbjct: 177 DIYETISESDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNI 236
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTF
Sbjct: 237 SVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTF 296
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM E+LAYKNTVE ITGIIS+ I
Sbjct: 297 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMAEELAYKNTVESITGIISRTI 356
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
ST+GMLAVYNSFS ++KKEFE+AYSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 357 STKGMLAVYNSFSPDEKKEFERAYSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFY 415
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/357 (87%), Positives = 330/357 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+LSA M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 304 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 363
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 364 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 420
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/398 (82%), Positives = 355/398 (89%), Gaps = 8/398 (2%)
Query: 20 SSETLKEALKH--LNLASFSSTAKSL-----RALKTTTGRGSALSAWMAS-ETALKTPFL 71
+++TLK K NL+ SS+ SL RA TT GSA++A M S A+K P
Sbjct: 17 ATKTLKHPTKTSVHNLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTN 76
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDFETSVFKK+ I+LA +EYIVRGGRDLFNLLPDAF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 77 LDFETSVFKKEKINLAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLR 136
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAE KSDI+VK+GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQ
Sbjct: 137 DSLAETKSDILVKIGLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQ 196
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYE++FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 197 ADNYEQVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQG 256
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 257 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 316
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVESLFRR+TENGM E+LAYKNTVECITGIISK IST+GMLAVYN+ + E+KKEFE
Sbjct: 317 AVHGIVESLFRRYTENGMAEELAYKNTVECITGIISKTISTKGMLAVYNALTEEEKKEFE 376
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
AYSAS+YPCM+ILYECYEDVA GSEIRSVVLAGRRFY
Sbjct: 377 TAYSASFYPCMDILYECYEDVATGSEIRSVVLAGRRFY 414
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/357 (87%), Positives = 331/357 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 417
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 0.980 | 0.692 | 0.769 | 4e-161 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.978 | 0.685 | 0.724 | 8.2e-154 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.858 | 0.619 | 0.802 | 1.6e-148 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.757 | 0.79 | 0.310 | 6.7e-33 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.697 | 0.727 | 0.334 | 6.7e-33 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.678 | 0.700 | 0.317 | 1.3e-31 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.683 | 0.712 | 0.309 | 1.6e-31 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.678 | 0.716 | 0.310 | 3e-30 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.498 | 0.630 | 0.334 | 3.6e-25 | |
| TIGR_CMR|GSU_1909 | 338 | GSU_1909 "ketol-acid reductois | 0.546 | 0.674 | 0.307 | 2.5e-22 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 321/417 (76%), Positives = 348/417 (83%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----R 52
MAAAT + + SPS SS+TL L N+ SS++KSLR+L T
Sbjct: 1 MAAATSSIAPSLSCPSPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGAT 60
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 417
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
Identities = 305/421 (72%), Positives = 345/421 (81%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKH--LNLASF--SSTAKSLRALKTT-------T 50
A A FS + + +S+ LK++ K LNL SST K+ R+LK
Sbjct: 3 ATAATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGAN 62
Query: 51 GRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAF 108
G GSALSA M S ++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF
Sbjct: 63 GGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAF 122
Query: 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168
GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGT
Sbjct: 123 KGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGT 182
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK 228
LGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI QS+G DFPK
Sbjct: 183 LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 242
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
NI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPF
Sbjct: 243 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPF 302
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK 348
TFATTLEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK
Sbjct: 303 TFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISK 362
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRF
Sbjct: 363 TISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRF 422
Query: 409 Y 409
Y
Sbjct: 423 Y 423
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
Identities = 288/359 (80%), Positives = 316/359 (88%)
Query: 52 RGSALSAWMASETALKTPF-LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
R A++A +A+ A+ LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEY+SDIFGERGILLGAVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK I
Sbjct: 287 ATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTI 346
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
S +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 347 SKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFY 405
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 103/332 (31%), Positives = 163/332 (49%)
Query: 84 ISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS AD E + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323
AV QDV G A A+ VA+GS + + TT E+E SD++GERG L+G +HG+ + +
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEV 281
Query: 324 FTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
E G + A+ TVE T + +I GM +Y + S ++ +S+ + ++
Sbjct: 282 LRERGHSPSEAFNETVEEATQSLYPLIGANGMDWMYAACSTTARRGAID-WSSRFKDNLK 340
Query: 384 ILY-ECYEDVAAGSEI-RSVVLAGRRFYVSSY 413
L+ E Y+ V G+E RS+ ++ Y Y
Sbjct: 341 PLFNELYDSVRDGTETQRSLDYNSQKDYREKY 372
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 103/308 (33%), Positives = 154/308 (50%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RKGS S+ A G+
Sbjct: 77 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKGS-SWEAAVEDGWV 128
Query: 164 E-ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSM 222
EN L ++ E IS +++ L+SDAAQ++ + I +
Sbjct: 129 PGEN--LFEVDEAISRGTIIMDLLSDAAQSETWFHIKPQLTEGKTLYFSHGFSPVFKDLT 186
Query: 223 GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282
++ P NI VI PKG G +VR L+ +G+ GINSS+AV DV G+A A+ ++
Sbjct: 187 HVEPPSNIDVILAAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAEEKAIAMAI 241
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A+GS + + TT E+E SD++GERG L+G +HG+ + + ENG A+ TVE
Sbjct: 242 AIGSGYVYKTTFEREVNSDLYGERGCLMGGIHGMFLAQYEVLRENGHTPSEAFNETVEEA 301
Query: 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSV 401
T + +I GM +Y++ S ++ Y + E YE V GSE RS+
Sbjct: 302 TQSLYPLIGKYGMDYMYDACSTTARRGALDWYPRFKDALKPVFEELYESVKNGSETKRSL 361
Query: 402 VLAGRRFY 409
R Y
Sbjct: 362 EFNSRSDY 369
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 94/296 (31%), Positives = 150/296 (50%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
+ +I G+ ++ + S ++ ++L E Y++V G+E +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAK 360
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 94/304 (30%), Positives = 153/304 (50%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 FEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAN 311
Query: 354 GMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVVLAGRRFY 409
GM +Y + S ++ ++ + + P LY+ +D GSE RS+ + Y
Sbjct: 312 GMDWMYEACSTTARRGAIDWSPRFKDALKPVFNQLYDSVKD---GSETQRSLDYNSQPDY 368
Query: 410 VSSY 413
Y
Sbjct: 369 REKY 372
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 92/296 (31%), Positives = 144/296 (48%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G+
Sbjct: 71 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDGWV 123
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
L + + I V+ L+SDAAQ++ + I +
Sbjct: 124 PGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTH 182
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +VA
Sbjct: 183 VEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVA 237
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS + + TT E+E SD++GERG L+G +HG+ + + ENG + A+ TVE T
Sbjct: 238 IGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEAT 297
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
+ +I GM +Y++ S ++ Y + + YE G+E +
Sbjct: 298 QSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETK 353
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 78/233 (33%), Positives = 122/233 (52%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-- 289
V V PK G VRR+Y++GK G+ AV+QD G+A ++AL ++ +G
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGK-----GVPGLIAVYQDATGKAKDLALAYAKGIGCTRAGV 179
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
F TT ++E +D+FGE+ +L G V ++++ F E G ++AY EC+
Sbjct: 180 FETTFKEETETDLFGEQAVLCGGVTHLIKAGFETLVEAGYAPEMAY---FECL 229
|
|
| TIGR_CMR|GSU_1909 GSU_1909 "ketol-acid reductoisomerase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 79/257 (30%), Positives = 128/257 (49%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ VIG+GSQG A A NL+DS D+VV GL+ S S A+A AG T +
Sbjct: 18 RVAVIGYGSQGHAHANNLKDSGV----DVVV--GLKADSSSVAKATGAGLT-----VLPT 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK-NI 230
+ + G+D+V++L+ D Q D Y E++ +K + Q P+ +I
Sbjct: 67 ADAVKGADVVMILLPDEIQGDVYREEVGPYLKQGAYLAFGHGFNIHFGQIT----PRPDI 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT- 289
VI PKG G VR Y +G G+ A+H D G + +VAL ++ A+G
Sbjct: 123 NVIMAAPKGPGHLVRHEYTRG-----GGVPCLIAIHHDPSGNSRDVALAYASAIGGGRAG 177
Query: 290 -FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
T+ ++E +D+FGE+ +L G + ++++ F E G + ++AY EC+ T +I
Sbjct: 178 IIETSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYSPEMAY---FECLHETKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
+I G+ + S S
Sbjct: 235 VDLIYEGGIANMRYSIS 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8711 | 0.8561 | 0.6040 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8727 | 0.8105 | 0.5847 | yes | no |
| Q01292 | ILV5_SPIOL | 1, ., 1, ., 1, ., 8, 6 | 0.7714 | 0.9280 | 0.6504 | N/A | no |
| O82043 | ILV5_PEA | 1, ., 1, ., 1, ., 8, 6 | 0.7869 | 0.9664 | 0.6936 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 417 | |||
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 4e-51 | |
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 6e-51 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 2e-41 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 9e-41 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 8e-29 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 3e-17 | |
| pfam01450 | 146 | pfam01450, IlvC, Acetohydroxy acid isomeroreductas | 9e-10 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 4e-51
Identities = 84/231 (36%), Positives = 123/231 (53%), Gaps = 22/231 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS + V VGLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340
TT ++E SD+FGE+ +L G + ++++ F E G +LAY TV
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVH 216
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 6e-51
Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 30/235 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340
A TT ++E +D+FGE+ +L G + ++++ F E G +LAY +
Sbjct: 177 RAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLH 231
|
Length = 338 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 2e-41
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 31/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A TT ++E +D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 177 AGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
|
Length = 330 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 9e-41
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 8e-29
Identities = 89/262 (33%), Positives = 138/262 (52%), Gaps = 30/262 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGFE-----VMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISK 348
TT ++E +D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 349 IISTQGMLAVYNSFSGEDKKEF 370
++ G+ + +S S D EF
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEF 255
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-17
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGERGILLG 311
A LE E +SD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
|
Length = 487 |
| >gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-10
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD+FGE+ +L G + G++++ F E G + ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 354 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVLA 404
G+ + +S S E+ + + + M+ E +D+ G+ + +L
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLE 111
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 146 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.98 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.97 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.96 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.96 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.96 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.96 | |
| PF01450 | 145 | IlvC: Acetohydroxy acid isomeroreductase, catalyti | 99.95 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.95 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.92 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.92 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.86 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.83 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.78 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.78 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.77 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.74 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.73 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.72 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.69 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.69 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.66 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.63 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.61 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.57 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.57 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.54 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.54 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.52 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.48 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.47 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.46 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.44 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.44 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.44 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.41 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.4 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.39 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.38 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.36 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.36 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.36 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.32 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.32 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.31 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.31 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.3 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.29 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.29 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.26 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.25 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.25 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.25 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.24 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.21 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.2 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.13 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.12 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.11 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.1 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.09 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.08 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.05 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.04 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.03 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.03 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.03 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.02 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.02 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.02 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.99 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.98 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.98 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.96 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.95 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.94 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.93 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.93 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.93 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.92 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.92 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.91 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.9 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.89 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.89 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.89 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.87 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.86 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.85 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.84 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 98.84 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.83 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.74 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.74 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.73 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.71 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.7 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.67 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.66 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.65 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.65 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.65 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.64 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.63 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.61 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.59 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.59 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.58 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.58 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.54 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.52 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.49 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.48 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.46 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.46 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.44 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.42 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.37 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.34 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.34 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.33 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.33 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.27 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.26 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.26 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.23 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.19 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.15 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.15 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.14 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.12 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.11 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.11 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.0 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.95 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 97.95 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.92 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.91 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.87 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.86 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.85 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.85 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.78 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.78 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.73 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.7 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.67 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.66 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.61 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.58 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.54 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.48 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.48 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.46 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.43 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.43 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.43 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.42 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.41 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.41 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.4 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.39 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.38 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.36 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.36 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.36 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.34 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.33 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.32 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.3 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.3 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.27 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.27 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.25 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.24 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.23 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.19 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.18 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.18 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.17 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.17 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.17 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.14 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.12 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.12 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.1 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.09 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.08 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.08 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.05 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.05 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.05 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.99 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.96 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.96 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.96 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.95 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.95 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.95 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.9 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.88 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.87 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.84 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.79 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.78 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.76 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 96.75 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.74 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.73 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.69 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.67 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.66 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.6 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.51 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.48 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 96.4 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.39 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.36 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.36 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 96.33 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.33 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 96.3 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.3 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.25 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.24 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.23 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.21 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.19 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.18 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.14 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.14 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.12 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.09 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.07 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.06 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.05 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.01 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.95 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.95 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.93 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.93 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.87 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.82 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.8 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.76 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.76 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.76 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.74 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.73 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.72 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.65 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.59 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.53 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.46 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.46 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.46 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.41 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.41 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.37 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.31 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 95.3 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.21 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.17 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 95.11 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.1 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.07 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.06 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.04 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.03 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.01 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.0 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 94.99 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.97 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.89 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.87 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.84 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.76 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.76 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.75 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 94.75 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.73 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.73 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.72 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.7 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.67 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.66 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.65 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.65 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 94.61 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.58 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.58 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.56 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.54 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.53 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.45 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.42 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.38 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.26 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 94.25 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.21 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.19 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 94.14 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.13 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.09 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.03 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.9 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.86 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.83 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 93.8 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 93.8 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 93.8 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.79 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.79 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.77 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.74 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.7 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.7 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 93.68 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.68 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.64 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.59 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 93.56 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.56 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.55 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.52 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.51 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.42 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 93.41 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.38 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 93.26 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.19 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.14 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 93.13 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.08 | |
| PLN00106 | 323 | malate dehydrogenase | 93.07 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.06 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.04 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 93.02 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 93.01 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.0 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.98 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 92.96 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 92.89 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 92.87 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.84 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.83 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.81 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.76 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 92.73 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 92.65 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.63 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 92.61 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.55 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 92.51 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.49 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 92.45 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.41 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.38 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.36 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 92.35 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.33 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.32 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 92.32 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 92.29 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.27 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.23 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 92.12 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 92.12 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 92.1 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.96 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 91.93 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 91.8 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 91.78 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 91.59 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 91.46 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.39 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.38 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.35 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 91.33 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 91.32 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 91.11 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 91.03 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 91.01 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 90.92 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.85 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 90.85 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 90.77 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 90.5 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 90.5 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 90.26 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 90.24 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.22 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 90.21 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 90.12 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 90.09 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.0 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 89.97 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 89.81 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 89.78 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 89.74 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 89.68 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 89.62 | |
| PRK08223 | 287 | hypothetical protein; Validated | 89.59 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.41 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 89.19 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 89.12 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 89.08 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 89.0 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.98 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 88.85 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 88.82 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.77 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 88.76 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 88.75 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.72 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 88.64 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.62 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 88.5 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.44 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 88.41 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 88.36 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 88.33 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 88.32 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 88.32 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.3 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.27 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.15 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.1 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 88.05 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 87.98 | |
| PRK07411 | 390 | hypothetical protein; Validated | 87.91 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 87.9 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 87.8 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.79 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 87.79 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.68 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.6 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 87.59 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 87.52 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 87.49 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 87.48 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 87.17 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 87.16 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 87.09 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 87.08 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 86.9 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 86.78 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 86.78 | |
| PLN02477 | 410 | glutamate dehydrogenase | 86.76 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 86.6 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 86.56 | |
| PLN02661 | 357 | Putative thiazole synthesis | 86.54 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 86.5 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 86.41 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 86.37 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 86.3 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 86.14 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 86.06 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 85.93 | |
| PRK05717 | 255 | oxidoreductase; Validated | 85.91 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 85.91 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 85.8 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 85.66 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 85.59 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 85.5 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.49 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 85.44 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 85.35 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.35 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 85.32 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 85.24 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 85.19 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 85.17 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 85.15 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.08 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 85.06 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 84.99 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 84.98 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 84.95 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 84.92 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 84.71 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 84.61 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 84.6 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 84.59 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 84.57 |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=572.17 Aligned_cols=292 Identities=33% Similarity=0.532 Sum_probs=278.9
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCC
Q 014863 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 101 f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
+..+ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|.++||. +.+++|++++||
T Consensus 10 da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~AD 76 (338)
T COG0059 10 DADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRAD 76 (338)
T ss_pred cCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCC
Confidence 3344 58999 9999999999999999999999 999999999999999999999999 579999999999
Q ss_pred eEEEeecchhHHHHHH-HHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 181 LVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 181 iViLavpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
+|++++||..|.+||+ +|.|+|++|++|.|+|||+++|. .+.||+|++|+||+||+||+.||++|++| +|+
T Consensus 77 vim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~Gv 148 (338)
T COG0059 77 VVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGV 148 (338)
T ss_pred EEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCc
Confidence 9999999999999998 79999999999999999999986 46999999999999999999999999996 899
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
|++|+++||+||+++++|++|++++|++| +++|||++|+++||||||++|||++.++|+++||++|++|++||.||++
T Consensus 149 P~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE 228 (338)
T COG0059 149 PALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFE 228 (338)
T ss_pred eeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhhcchhHHHHHHcCCcccccccc
Q 014863 338 TVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYR 414 (417)
Q Consensus 338 ~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~ 414 (417)
|+|+++ +|+|||+|.|+..|+++|| +|++||++.++ + +..++++|+++|++||||+|+++|+++++.-|+..++
T Consensus 229 ~lhE~k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~g~p~l~~ 305 (338)
T COG0059 229 CLHELK-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQAGRPKLEA 305 (338)
T ss_pred HHHHHH-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhcCCHHHHH
Confidence 999999 9999999999999999999 78899998665 3 5667899999999999999999999999999999998
Q ss_pred cc
Q 014863 415 LR 416 (417)
Q Consensus 415 ~~ 416 (417)
||
T Consensus 306 ~r 307 (338)
T COG0059 306 LR 307 (338)
T ss_pred HH
Confidence 87
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=560.48 Aligned_cols=312 Identities=27% Similarity=0.394 Sum_probs=294.8
Q ss_pred ccccccchhhHhhhh-----hcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE
Q 014863 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv 145 (417)
.|||||++||+|+++ |++++| |++.+..|+| |||+|||||+||+++|+|||++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 778888 9888899999 9999999999999999999999 999999
Q ss_pred EecCC-----chhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhh
Q 014863 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (417)
Q Consensus 146 g~r~~-----~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~ 220 (417)
++|++ ++++++|.++||. +.+.+|++++||+|++++||..+..++++|+|+||+|++|.++|||++++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 5789999999997 568999999999999999999988999999999999999999999999876
Q ss_pred ccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 014863 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (417)
Q Consensus 221 ~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~--qd~sgea~e~a~al~~aiG~~~--~iett~~~ 296 (417)
++.||+|+|||+|+||+||+.||++|++| +|+|++|||+ ||++|+++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 46999999999999999999999999996 8999999999 8999999999999999999997 89999999
Q ss_pred hhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014863 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 297 E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~ 376 (417)
|+++||||||++|||+++++++++||.+|++|++|++||+++++++. .|+++|+++||.+|+|++| ++++||.+..
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S--~tak~ga~~~- 287 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKIRAFEL- 287 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhcc--chhhcccccc-
Confidence 99999999999999999999999999999999999999999999998 9999999999999999999 5668998743
Q ss_pred cChhHHHHH----HHHHHhhhcchhHHHHHHcCCcccccccccc
Q 014863 377 SYYPCMEIL----YECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 377 ~~~~~~~~m----~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
.+.+|++| +++|++||||+|+|+|+.++...++++..||
T Consensus 288 -~~~~k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r 330 (487)
T PRK05225 288 -SEQLKEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWR 330 (487)
T ss_pred -cHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHH
Confidence 45566666 9999999999999999999999999999998
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-69 Score=534.50 Aligned_cols=284 Identities=31% Similarity=0.512 Sum_probs=266.0
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 104 ~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..+.|+| ++|||||+|+||.++|+||+++ |++|++++|+ .++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3578999 9999999999999999999999 9999998876 6678888888987 458999999999999
Q ss_pred EeecchhHHHHHH-HHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEE
Q 014863 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 184 Lavpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
+++|+..+.+++. +++++|++|++|+++|||+++|. .+.||+|+|||||+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988888886 69999999999999999999876 46999999999999999999999999996 899999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
||++||+||++.+++++|+.++|++| +++|||++|+++||||||++|||++.++|+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhcc---ChhHHHHHHHHHHhhhcchhHHHHHHcCCccccc
Q 014863 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 341 ~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~---~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
+++ +|+|||+|+|+.+|+++|| +|+|||+|.++. ++.+|+.|+++|++||||+|||+|+++++.-+++
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~~g~~~ 299 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQAGRPT 299 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCHH
Confidence 997 9999999999999999999 788999987663 7789999999999999999999999998865543
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=501.55 Aligned_cols=288 Identities=32% Similarity=0.517 Sum_probs=269.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
...++| +||+|||+|+||.++|++|+++ |++|++++++++++++.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 467889 9999999999999999999999 9999999888788888999999873 589999999999999
Q ss_pred eecchhHHHHH-HHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
++||..+.+++ +++.|+|++|++|+++|||++++++. .||++++|||+|||+|++.+|++|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 67999999999999999999998864 889999999999999999999999996 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
++++|+++++++++++|+.++|+++ +++|||.+|+++||||||++|||++.++++++|+.+|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhhcchhHHHHHHcCCccccccccc
Q 014863 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 342 l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
++ +|+|||+|+|+.+|+++|| +|+|||+|..+ + ++.+|+.|+++|++||||+|+|+||++++..+...-.+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~~~~~~~~~~ 305 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENKAGRPTFKAL 305 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHH
Confidence 97 9999999999999999999 78899998665 2 67899999999999999999999999988765554443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=473.06 Aligned_cols=280 Identities=33% Similarity=0.514 Sum_probs=256.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+| |||+|||+|+||+++|++|+++ |+++++++++++++++.+.+.|+.. .++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9988888887667788888889873 468899999999999999
Q ss_pred chhHH-HHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+.+. .+.++|.+++++|.+|+++|||++++++. .+|++++|||+|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 99555 45567999999999999999999999865 788899999999999999999999996 8999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~ 344 (417)
+++++++++++++|+.++|..| +++|+|++|+++|+|+++|+|||++|+++.+++|++|++|||||+||++++||++
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~- 219 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK- 219 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 9999999999999999999996 8999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcHHHHHhcccCchhhhhhhhhhcc--ChhHHHHHHHHHHhhhcchhHHHHHHcCCcccc
Q 014863 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYV 410 (417)
Q Consensus 345 ~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~ 410 (417)
|+++|++++|+..|+++|| +|+|||+|..++ ++.+|+.|+++|++||||+|+|+|+++++..+.
T Consensus 220 g~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~~~~~ 285 (314)
T TIGR00465 220 LIVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENEAGKP 285 (314)
T ss_pred HHHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhccCCcH
Confidence 9999999999999999999 678999984443 566889999999999999999999988755443
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=302.56 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=137.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+| |+|+|||||+||+++|+||||| |++|++++|+++++|++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999999999999999 5799999999999999999
Q ss_pred chhHHHHH-HHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|..|.++| ++|.|+|++|++|.++|||+++|. .+.||++++|+|++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 99999999 579999999999999999999875 36899999999999999999999999996 8999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 014863 267 QDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~ 287 (417)
||.|+++++++++|++++|++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=285.43 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=197.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|+||+|||+|+||.+++.+|.++ | .+|++.+|..++....+.++|... ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 48999999999999999999999 7 378888887666556888888873 567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...+++.++.+ ..++++ |++++|+++..++. .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999999 667765 67999999999987 677 889999999999998 799998 777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
..+++++..+.+.+|+..+|.. .+..+++|+..|+++||+|| ++|++.+++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999975 33345888999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
+. |+++|+.++|. ..|+|+||||.-
T Consensus 205 ~~-Gaakll~e~~~~p~~Lr~~VtSPGG 231 (266)
T COG0345 205 VA-GAAKLLLESGEHPAELRDQVTSPGG 231 (266)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCcCCCc
Confidence 99 99999999999 899999999953
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=275.45 Aligned_cols=220 Identities=18% Similarity=0.249 Sum_probs=189.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHH-HcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+||+|||+|+||.+++++|.++ |+ +|++.+|+ .++.+.+. +.|+.. +.++.|++++||+||||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~-~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLN-VSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCC-HHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999988 64 56666554 33444444 478754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...++++++.++++++++ |++++|+++..+++ .++...+++|+|||+|..+ |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998876 56999999998876 5555668999999999988 689998 567
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
+++++.+..+.+..||..+|.. + +..++.|+..|+|+||+|| +++++.+++++.|+|+++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--~------~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--E------VVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--E------EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999965 1 2234678888999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
+. |.++|+.++|. ..|+|+|+||.-
T Consensus 208 ~~-G~a~ll~~~~~~p~~l~~~V~sPGG 234 (272)
T PRK12491 208 VL-GSAKMVLETGIHPGELKDMVCSPGG 234 (272)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 99 99999999988 899999999953
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=255.81 Aligned_cols=221 Identities=14% Similarity=0.168 Sum_probs=184.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHH-HHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G-~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|+||+|||+|+||.+++++|+++ | .+|+++.++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 68999999999999999999988 7 4677777654332222 22232 222 3577888999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
|+||+...++++++.++++++++ |+++.|+++..+++ .+|. .++||+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 99999999999999999988864 67999999988876 4443 58999999999888 689997 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~-Gl~~e~A~~~~ 338 (417)
+.+.+++.+.++.+..+|..+|... +..+++|+..|+|+||+|| +++++.+++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVM--------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEE--------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6688899999999999999999652 2223678899999999999 699999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 339 VECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 339 ~~~l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
.|++. |.++|+.++|. ..|+|+||+|.-
T Consensus 206 ~~~~~-G~a~l~~~~~~~p~~l~~~v~spgG 235 (277)
T PRK06928 206 NFALA-GTGKLLVEEDYTFSGTIERVATKGG 235 (277)
T ss_pred HHHHH-HHHHHHHccCCCHHHHHHhCCCCCh
Confidence 99999 99999999987 999999999953
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=244.50 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=179.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
+||+|||+|+||.+++++|+++ +. ++++.+++..+ .+... ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35554443211 24432 4577888899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
|+...++++++.|+++++.+|++++|+++..++. .++.+..++++|||+|... |.|.+. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999988777789999999887765 4455557999999999666 467765 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~ 343 (417)
+++.+..+.+..+|..+|... +..++.|+..++++||+|| +++++.+++++.|+++++|+++++|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQ--------EIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEE--------EEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999651 2223578888999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHhcccCchh
Q 014863 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 344 ~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
|.++|+.++|. ..|+|+||+|.-
T Consensus 203 -G~a~ll~~~~~~~~~l~~~v~spgG 227 (260)
T PTZ00431 203 -GSVHMVKASDQPVQQLKDDVCSPGG 227 (260)
T ss_pred -HHHHHHHhcCCCHHHHHHhCCCCCh
Confidence 99999999986 899999999953
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=234.24 Aligned_cols=220 Identities=13% Similarity=0.154 Sum_probs=183.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+||+|||+|+||.+++++|.++ | .+|++.+|+.++. ...+...|+.. ..++.++++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 6 5677777754333 33344567754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE-eccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~-a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...++++++.+.++++++|+. ++|+++..+.+ ..+.+.+|+++|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 999999999999999988887664 69999887765 4456678999999999887 467885 666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
..+++.+..+.++.+|..+|... +..| ++|+..+.++|++|+ +++++.+.+++.|+++++|++...++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-----~v~e---~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-----VVEE---EDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-----EeCH---HHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77888999999999999999642 1133 467778889999999 78999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
+. +.++++.+++. ..|++.+|+|.
T Consensus 210 ~~-gsa~~~~~~~~~~~~l~~~v~spg 235 (279)
T PRK07679 210 MI-GAAEMLKASEKHPSILRKEITSPG 235 (279)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhcCCCc
Confidence 99 99999997665 88999999885
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=226.16 Aligned_cols=221 Identities=14% Similarity=0.159 Sum_probs=180.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---e-EEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~-Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+||+|||+|+||.+++.+|.+. +. + +++.+|++. +..+.+...|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999887 52 3 555555443 3334444467653 467888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
||+.+.++++++.+++++..+|++++|+++..++. .++.+..++++|||.|... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999999886433566889999888876 5566668999999999866 5789885 456
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
.+.+.+..+.+..+|..+|.... ..| +.+...++++||.|+ +++++.+.+++.|+++++|++++.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999997622 233 456677899999999 789999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHhcccCchh
Q 014863 343 TGIISKIISTQG-MLAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G-~~~l~~~vs~~~~ 367 (417)
. |.++|+.+.+ ...|+|+|++|.-
T Consensus 211 ~-g~~~~~~~~~~~~~l~~~v~spgG 235 (245)
T PRK07634 211 S-GSASMLEQTQDPANLREQVTTPGG 235 (245)
T ss_pred H-HHHHHHhCCCCHHHHHHhCCCCCh
Confidence 9 9999998743 3899999999963
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=234.50 Aligned_cols=220 Identities=20% Similarity=0.240 Sum_probs=193.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHH-HHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|||||.|+|..++++++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5799999999999999999988 76 4444444 4455555 78889875 566789999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
+|+.+.+++.++.+.+..+++| +.++|..+..+++ .++...+|||+|||+|..+ |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999999888888864 5899999988876 5566779999999999888 688985 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
..+++.++.+++..++..+|.. .|..+++++..|.|+|++|+ ++|++.|.+|+.|+||++|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999987 56677999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
+. |.+||++++|. ..|+|.||||.-
T Consensus 206 ll-GAakMVl~s~qHP~~Lkd~V~SPgG 232 (267)
T KOG3124|consen 206 LL-GAAKMVLASGQHPAQLKDDVCSPGG 232 (267)
T ss_pred HH-hHHHHHHhccCCcHHHhCCCCCCCc
Confidence 99 99999999998 999999999953
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=225.06 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=182.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||+|||+|+||.+++++|+++ |+ +|+++++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5899999999999999999998 86 77777343344456666778864 5678889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+...++++++.+.++++++ |++++|+++..+.. ..+.. +++++|||.|... |.+.+. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999999988886 55779998776654 33333 7999999999877 456765 5667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
...+.+..+.++.++..+|. ++.. .| +.|+..+.++|++|+ +++++.+.+++.|+++++|++.+.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~---~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVV---DE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEe---CH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77888999999999999995 2222 34 567777889999999 689999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
. ++++|+.++|. ..|+++|++|.-
T Consensus 206 ~-gs~~l~~~~~~~~~~l~~~v~spgG 231 (266)
T PLN02688 206 L-GAAKMVLETGKHPGQLKDMVTSPGG 231 (266)
T ss_pred H-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 9 99999999888 899999999953
|
|
| >PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-29 Score=223.03 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=106.5
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014863 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 ~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++|+++||++|++||+||.||++|+|++. +|+++|+++|+.+|+++|| +|++||.+
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 67899999999999999999999999999999999999999999999966 9999999999999999999 88899998
Q ss_pred hhc-c-ChhHHHHHHHHHHhhhcchhHHHHHHcCCccccccccc
Q 014863 374 YSA-S-YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 374 ~~~-~-~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
..+ + ..++++.|+++|++||||+|+|+|+.+++..++..-.|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~g~~~l~~~ 121 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQAGDPRLNAM 121 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcCCCHHHHHH
Confidence 544 3 46788999999999999999999999998888775444
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=223.15 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=175.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|+||.+++.+|.++ |+ +|.+.+|+..+....+.+. |+.. ..++.+++.++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 5777666543332333333 5653 467888899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...++++++.|+++++++|+ +++|+++..++. .++ ..++++|||+|... +.|.+. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 99999999999999998888654 667788777765 333 36999999988654 356775 445
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~-~Gl~~e~A~~~~~~ 340 (417)
....+.+..+.+..++..+|.. . +..+++++..+.++|++|+ +++++.+.+++ .|+++++|++++.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~-----~---~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP-----L---VIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE-----E---EEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667788899999999999954 1 2223677778999999999 68999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 341 ~l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
++. |.++|+.+++. ..|+|+|++|.
T Consensus 205 ~~~-G~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLI-GMGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHH-HHHHHHHhcCCCHHHHHHhCCCCC
Confidence 999 99999999876 89999999996
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=218.59 Aligned_cols=221 Identities=16% Similarity=0.204 Sum_probs=181.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---ceEEEEecCCchhHHHHHH-cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|+||+|||+|+||.+++..|.++ | .+|.+.+|+.+ ..+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 58999999999999999999988 7 56777666543 3444444 47653 467788889999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
||+...++++++.+++ +..+|++++|++...++. .++.+.+++++|||.|... |.|++. +++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999987 334567999998777765 4455678999999998655 456764 6678
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
.+.+.++.+.+..++..+|....+. .| +.++..++++|++|+ +++++.+.+++.|+|+++|.+.+.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~~----~e---~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWVD----DE---KQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEEC----Ch---HhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999999999999642221 13 467788999999997 788999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
. +.++++.++|. ..++++|++|.-
T Consensus 207 ~-g~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 207 L-GAAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred H-HHHHHHHhcCCCHHHHHHhCCCCcH
Confidence 9 99999999887 999999999953
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=207.53 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=168.3
Q ss_pred ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchhhhh
Q 014863 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (417)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~ 219 (417)
.+|++++|+.++..+.+.+.|+.. ..++.++++++|+||||+||+...++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 367888876555445556678764 567888999999999999999999999999988877665 669999999988
Q ss_pred hccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhh
Q 014863 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (417)
Q Consensus 220 ~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~ 299 (417)
+. .++.+.+++|+|||+|... |+|++. ++...+++.+..+.+..||..+|... +..
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~~--------~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEVV--------ELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCEE--------EEC
Confidence 76 5666668999999999888 588987 66788899999999999999999652 222
Q ss_pred hhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 300 ~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
++.|+..++++||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.++|. ..|+++|++|.-
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~-G~a~l~~~~~~~~~~l~~~v~spgG 214 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVK-GAAKLLEESGEHPALLKDQVTSPGG 214 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHcCCCCcH
Confidence 3677888999999999 7999999999999999999999999999 99999999977 999999999964
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=203.43 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=162.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||+|||+|+||.+++++|++. |+ .+.+++|+.++..+.+... |+.. +.++.++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4899999999999999999988 65 3455555544333334434 3543 5688889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||+|... +.|++.+ ++.
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998763 567775 56889999888876 4455668999999998776 4678773 322
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~ 346 (417)
.+.++.++..+|....+ .+|...|+++..+...+..-.+++++.+.+++.|+|+++|++...+++. |.
T Consensus 133 -------~~~~~~l~~~lG~~~~~----~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~-G~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVEC----DSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFA-SL 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEEE----CChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 25789999999975322 2354556554443222222228899999999999999999999999999 99
Q ss_pred HHH-HHHhcH--HHHHhcccCchh
Q 014863 347 SKI-ISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 347 ~~l-i~e~G~--~~l~~~vs~~~~ 367 (417)
++| +.+++. ..|+|+||||.-
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spgG 224 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKGG 224 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCCc
Confidence 999 677766 899999999953
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=189.82 Aligned_cols=267 Identities=15% Similarity=0.085 Sum_probs=177.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
++|+|||+|+||+++|++|++. |+++.++.+... .....+...|+. +....+.++++++||+||+|+|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 887766655432 223333334444 2223567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~p-~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
..++++++.+ .++++.+|+++++++...++......+...++|..|| ++|... ..+..+....+.|.++++++..+.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999998 4899999999999975433211113455678999999 444421 122222222335678889999989
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~l 349 (417)
+.+..+.++.++..+|.. ++..+..+ .+..+.+.+.+|.++-..+ +...|.++++++.++.+.+. .++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~~------HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfr-d~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAEE------HDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFR-DITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHHH------HhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhccccc-CCccc
Confidence 999999999999999964 33333233 3455888899999665544 56678899999999999888 77777
Q ss_pred HHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHHHHHhhhcch--hHHHHHHc
Q 014863 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGS--EIRSVVLA 404 (417)
Q Consensus 350 i~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~g~--~~~~~~~~ 404 (417)
.. +.-.-.+|.|+++....-.. -+...+.|.++.+.+++++ ..++++.+
T Consensus 221 a~-~~p~~w~di~~~N~~~~~~~-----l~~~~~~l~~~~~~l~~~d~~~l~~~~~~ 271 (359)
T PRK06545 221 AS-SDPGMWRDILESNAEALLDA-----LDEWIEDLDRARDALESGDAEAIAELFDA 271 (359)
T ss_pred cC-CCHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 63 33344444444432211111 1223334455555555544 33555444
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=176.17 Aligned_cols=261 Identities=16% Similarity=0.171 Sum_probs=181.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceE-EEEecCCchhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLavpd~ 189 (417)
++|+|||+|+||+++|+.|+.. |+.+ +++.+.+....+.+.+.|+.. +...+. .+++.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 8999999999999999999999 9877 455555556678888888873 222333 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh-HHHHHhhcccccCCCceEEEeecCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~-vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
+..++++++.|++++|++|+|+.+++-..++......|++++||..||.. |+. ...+| .+..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~-G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMF-GPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCC-CCccccccc--------CCCEEEEcCCCC
Confidence 99999999999999999999999997433322223666666999999943 442 33333 458889999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014863 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK 348 (417)
Q Consensus 269 ~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~ 348 (417)
.+.+.++.+.++|.++| .++++++.++|++.- +.+++..+.+..++...+-+.+....++.+++. ++.+
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as-----~~fr 215 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLETEELLVLKLAS-----GGFR 215 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCcchhHHHhccc-----cchh
Confidence 88999999999999999 578889999996553 456777788888888888777763333444333 3333
Q ss_pred HHHHhcH--HHHHhcccCchhhh-hhhhhhccChhHHHHHHHHHHhhhcchh--HHHHHHcC
Q 014863 349 IISTQGM--LAVYNSFSGEDKKE-FEKAYSASYYPCMEILYECYEDVAAGSE--IRSVVLAG 405 (417)
Q Consensus 349 li~e~G~--~~l~~~vs~~~~~~-~~~~~~~~~~~~~~~m~~~~~~v~~g~~--~~~~~~~~ 405 (417)
++.+--- ..||..++.-|+.. ... -...++.+.++.+.|+++.. ..++..+.
T Consensus 216 d~tRia~~~P~m~~dI~~~N~~~~l~~-----i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a 272 (279)
T COG0287 216 DITRIASSDPEMYADIQLSNKEALLEA-----IERFAKSLDELKELIENGDAEALADLFEEA 272 (279)
T ss_pred hHHHHHcCChHHHHHHHHhCcHHHHHH-----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2221111 33444444222210 111 12344566677777777774 34444433
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=166.17 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=133.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||+|||+|+||+++|+.|++. |++|++++++ ....+.+.+.|... . ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~-~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRR-ESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999999 9888766654 55677777778652 1 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014863 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sg 271 (417)
.++++++.++++++.+|+++++++...++..... ...+|..||... +. ...++.|......|.++++++..+.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HPm~G-~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHPMAG-TA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCCcCC-CC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999999885544321111 125999999321 11 011222222223468888999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHH
Q 014863 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 272 ea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea 319 (417)
++.+.+..++..+|. ++++.+..+| | ....+++.+|.++-.
T Consensus 146 ~~~~~v~~l~~~lG~-~~v~~~~~~h---D---~~~a~~shlp~~~a~ 186 (279)
T PRK07417 146 NALAIVEELAVSLGS-KIYTADPEEH---D---RAVALISHLPVMVSA 186 (279)
T ss_pred HHHHHHHHHHHHcCC-EEEEcCHHHH---H---HHHHHHcchHHHHHH
Confidence 999999999999996 4545554455 3 335566777775553
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-17 Score=170.52 Aligned_cols=199 Identities=17% Similarity=0.173 Sum_probs=151.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||+||| +|+||.++|+.|++. |++|++..++.....+.+.+.|+.. ..+..+++.++|+||+|+|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999999 9988877776444446677778753 4577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
..++++++.|+++++++|+++++++ ...+.. .+|.+.+||..||.. |+.. ..| .|..+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-ccc--------CCCEEEEecCC
Confidence 9999999999999999999888764 334443 456688999999842 2221 112 34566788888
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
+.+.+..+.+..++..+|. +++.++.++|++.- +..++..+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~-~v~~~~~e~HD~~~-----a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGA-RVIVTSPEEHDRIM-----SVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 7888999999999999996 45566666663332 334555555667778888889999998876654
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=159.85 Aligned_cols=196 Identities=17% Similarity=0.144 Sum_probs=137.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||+|||+|+||+++|++|++. |+ +|++.++ +....+.+.+.|+... ..+.+++. ++|+||+|+|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~-~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDH-NELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcC-CHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999998 75 5554444 4555667777887521 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCC------chhhHHHHHhhcccccCCCceEEE
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
...+++.++.+ ++++++|++++..+....+...-. ...+||+.||+. |.....++| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 999999988766553222210001 125799999974 434333444 3567778
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
++..+.+.+..+.+..++..+|. +++.++.++|+..- +.+++..+.+.-++.+.+. .+.+++....
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~-----a~vs~lph~~a~~l~~~~~-~~~~~~~~~~ 204 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHA-----AYISHLPHIISFALANTVL-KEEDERNIFD 204 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-hcCChHHHHh
Confidence 88877888899999999999995 56666666664332 2345555556666666664 4666555434
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=157.38 Aligned_cols=186 Identities=18% Similarity=0.223 Sum_probs=137.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++|+|||+|+||.++++.|++. |+ +|++++++ ....+.+.+.|+.. ....+.+++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 75 66666554 44567777777641 12456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCC------chhhHHHHHhhcccccCCCceEEE
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
...++++++.++++++.+|+++++++...++......+.+++++..||.. |+....++| .|.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~--------~g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELF--------ENRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHH--------CCCeEEE
Confidence 99999999999999999999988876433322111345677899999954 222223444 3467888
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~ 321 (417)
++....+.++.+.+..++..+|.. ++..+.++| +.++.+.+.+|.++-.++
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~-~~~~~~~~h------D~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR-VEEMDPEHH------DLVLAITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH------hHHHHHHhhHHHHHHHHH
Confidence 888878888999999999999964 444433344 356788899998765544
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-18 Score=176.79 Aligned_cols=104 Identities=16% Similarity=0.256 Sum_probs=91.8
Q ss_pred cccccccccchHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChh
Q 014863 302 IFGERGILLGAVH-GIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP 380 (417)
Q Consensus 302 lfgeqtvL~G~~~-a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~ 380 (417)
-|=++++|+|.+. +.+++.||++|++||+||.||+|++|+++ +|+|||+|+|+.+|+++|| +|||||+|.. ...
T Consensus 352 ~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~--g~~ 426 (487)
T PRK05225 352 EYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLF--SHA 426 (487)
T ss_pred HHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCccc--ChH
Confidence 3448899999876 68999999999999999999999999997 9999999999999999999 7889999744 244
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHcCCccccc
Q 014863 381 CMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 381 ~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
+.+.|+++|++||+|+|+|+| .+++...++
T Consensus 427 vi~~mk~~l~~Iq~G~fak~~-~e~~~g~~~ 456 (487)
T PRK05225 427 AVPLLKDFMATLQPGDLGKGL-PSNAVDNAQ 456 (487)
T ss_pred HHHHHHHHHHHcCCCHHHhhH-HhccCCcHH
Confidence 558999999999999999999 777766443
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=173.07 Aligned_cols=222 Identities=15% Similarity=0.129 Sum_probs=161.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||+|||+|+||.++++.|+.. |+ +|++++++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 73 66665554 44466777788751 12456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchh--h-------HHHHHhhcccccCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGP--S-------VRRLYVQGKEINGA 257 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~--~-------vr~ly~~G~e~~G~ 257 (417)
...++++++.++++++.+|+++++++ +..++. .++. ..++++||.|.. . ...+|+
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~-------- 141 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEKSGVHAANADLFR-------- 141 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCcchhhhhhhHHhC--------
Confidence 98999999999999999999999987 444443 3332 134555555521 2 123333
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHHcCCCHHHHHH
Q 014863 258 GINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 258 Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~~Gl~~e~A~~ 336 (417)
|.++++++....+.++.+.+..++..+|.. ++..+ + +.++..++++|++|+ +.-++.+.+.+.|.. ..+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~-~~~~~---~---~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~ 213 (735)
T PRK14806 142 NHKVILTPLAETDPAALARVDRLWRAVGAD-VLHMD---V---AHHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFR 213 (735)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHh
Confidence 356678888888999999999999999963 33332 2 344567889999999 677777888777764 46889
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHhcccCc
Q 014863 337 NTVECITGIISKIISTQGMLAVYNSFSGE 365 (417)
Q Consensus 337 ~~~~~l~~~~~~li~e~G~~~l~~~vs~~ 365 (417)
++.+.+. +++++. .+.-...+|.++++
T Consensus 214 ~a~~~f~-~~tRia-~~~p~~~~di~~~n 240 (735)
T PRK14806 214 YAAGGFR-DFTRIA-ASDPVMWHDIFLAN 240 (735)
T ss_pred hhccchh-cccccc-cCCHHHHHHHHHHh
Confidence 8888887 777777 33445556666554
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=154.72 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=127.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavp 187 (417)
++ ++|+|||+|+||+++|+.|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ .++|+|++|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 44 8999999999999999999988 88887666653 245666778764 46777776 47999999999
Q ss_pred chhHHHHHHHH-HhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 188 d~a~~~Vl~eI-~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+....++++++ .++++++++|+++.+++ +..+.. .++.+.+||++||+.+...-... -.+.+.++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGG--------WAGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCccc--------cCCCeEEE
Confidence 99999999998 78899999999888764 344444 55667899999998754431111 23466655
Q ss_pred eec----CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 014863 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (417)
Q Consensus 264 av~----qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~ 300 (417)
++. .+.+.++.+.++.++..+|+ ++++.+.++|++.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 542 45577899999999999994 6888899999655
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=151.84 Aligned_cols=193 Identities=19% Similarity=0.197 Sum_probs=132.4
Q ss_pred HHHHHHhhhhhhcCC--ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCC
Q 014863 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (417)
Q Consensus 126 iA~~Lr~s~~~~~~G--~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk 203 (417)
+|+.|+.+ | ++| ++.+.+....+.|++.|+.. .. .+..++++++|+||||+|+....++++++.|+++
T Consensus 1 ~A~aL~~~------g~~~~v-~g~d~~~~~~~~a~~~g~~~--~~-~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVEV-YGYDRDPETLEAALELGIID--EA-STDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSEE-EEE-SSHHHHHHHHHTTSSS--EE-ESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeEE-EEEeCCHHHHHHHHHCCCee--ec-cCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57889888 7 454 56777777889999999984 22 2336789999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 014863 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (417)
Q Consensus 204 ~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~a 283 (417)
+|++|+|+++++...++...-.+|.+++||.+|| +.|+. ...|...+.....|.++++++..+.+.++.+.+++++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999974322221125567899999999 33442 122223333445689999999998888999999999999
Q ss_pred hCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 284 iG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
+|+ +++..+.++|++.- +.+++..+.+.-++...+.+.+.+......
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~~~~~ 195 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDPDILR 195 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChHHHHh
Confidence 996 68888999997664 334555666666666666655544444444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=152.46 Aligned_cols=154 Identities=15% Similarity=0.099 Sum_probs=116.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||+|||+ |+||+++|+.|++.. +++|+ +.+.. ..+ ..+.++++++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-----~~~V~-g~D~~--------d~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-----QLEVI-GHDPA--------DPG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----CCEEE-EEcCC--------ccc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 999999999999741 66765 44431 111 2467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~p~---Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
..++++++.|+ +++|++|+|+++++-..++. ..+.+.+||..||. .|+....+ .+|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPM-aG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPM-TAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCC-CCCCCCcc--------cCCCeEEEeCCC
Confidence 99999999876 89999999999998443322 12335679999993 34432112 357898888664
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhh
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~d 301 (417)
..+..+.++.|+..+|+ ++++++.++|++.-
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~~ 162 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRVM 162 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHHH
Confidence 34557889999999995 68888999996654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=141.68 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=142.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----cCceecC----------CCcCCHHhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d----------~~~~~~~Ea 175 (417)
|+||+|||+|+||.++|..|... |++|++.++.. +..+.+.+ .|....+ ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 99888776543 33333332 1210000 013567788
Q ss_pred hccCCeEEEeecchh--HHHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 176 v~~ADiViLavpd~a--~~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999876 457888898888888776 5778888776655 3444458999999999765
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccc-hHHHHHHHHHHHHHHcCCCH
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRFTENGMNE 331 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G-~~~a~iea~~~~~v~~Gl~~ 331 (417)
+. .. .+++....+.+..+.+..++..+|...++ .+.+.. +.++. ...+++.-+...+.+.|+++
T Consensus 145 ---~~-l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~-----~~~d~~-----G~i~nr~~~~~~~Ea~~l~~~g~~~~ 209 (311)
T PRK06130 145 ---IP-LV-EVVRGDKTSPQTVATTMALLRSIGKRPVL-----VKKDIP-----GFIANRIQHALAREAISLLEKGVASA 209 (311)
T ss_pred ---Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEE-----EcCCCC-----CcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 12 22 35567778899999999999999964211 110111 11222 22334444455556777899
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcHHHHH
Q 014863 332 DLAYKNTVECIT-----GIISKIISTQGMLAVY 359 (417)
Q Consensus 332 e~A~~~~~~~l~-----~~~~~li~e~G~~~l~ 359 (417)
++......+..- .|.-.++...|++.++
T Consensus 210 ~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~ 242 (311)
T PRK06130 210 EDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHL 242 (311)
T ss_pred HHHHHHHHhcCCCCccCCCHHHHhhhhccchHH
Confidence 888876543320 1555666666764433
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=146.37 Aligned_cols=246 Identities=9% Similarity=0.030 Sum_probs=154.6
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 110 g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
.+++|+||| +|.||+++|+.|++. |+.|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99887776531 11456788999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
....++++++.+ +++|++|+++++++. ..+.. ..+. +||..||...... .+ ..|...+ +
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~~--~fvg~HPm~G~~~------~~----~~~~~vv--~ 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHSG--PVLGLHPMFGPDV------GS----LAKQVVV--V 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCCC--CEEeeCCCCCCCC------cc----cCCCEEE--E
Confidence 999999999999 999999999988753 23322 2222 6999999543221 11 1233333 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG- 344 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~- 344 (417)
....+.++.+.+..++..+|. +++..+.++|+..- +.+++..+.+.-++...+.+.|.+.+.....+.-....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~~fr~~ 288 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQALRHFATFAYGLHLAKENVDLEQLLALSSPIYRLE 288 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcChHHHHH
Confidence 334466788999999999995 67888888886553 22344444445555666666888877654432211110
Q ss_pred --HHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHHHHHhhhcch--hHHHHHHcCCcccc
Q 014863 345 --IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGS--EIRSVVLAGRRFYV 410 (417)
Q Consensus 345 --~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~g~--~~~~~~~~~~~~~~ 410 (417)
.+..+. ++=..||..+...|+..= + .-+...+.+.++.+.|++|+ ...+++.+.+++|-
T Consensus 289 la~~tRia--~~~p~lw~dI~~~N~~~~-~----~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~~~~ 351 (374)
T PRK11199 289 LAMVGRLF--AQDPQLYADIIMSSPENL-A----LIKRYYQRFGEALELLEQGDKQAFIDSFRKVEHWFG 351 (374)
T ss_pred HHHHHHHH--cCCHHHHHHHHHhChhHH-H----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 011111 011334444332221111 1 01233455666777776663 34666666666654
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-14 Score=141.42 Aligned_cols=251 Identities=12% Similarity=0.161 Sum_probs=157.3
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCceEEEEecCCch----hHHHHHHcCceecCC
Q 014863 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~ 167 (417)
+||.|.|.||| |.++|.+|.+. |++|++++++... .++...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777777776 88999999999 9999888876431 345566778764
Q ss_pred CcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccchhh----hhhccccCCCCCCcEEEeccCCchh
Q 014863 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG----HLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~i~----~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..+..++++++|+||+++|+.. ..++++++.+++++|++|++++.+... .+.. .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5688899999999999999988 578999999999999998887765432 2222 222222334454544444
Q ss_pred hHHHHHhhcccccCCCceEEE-----eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--
Q 014863 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-- 315 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~li-----av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-- 315 (417)
.. |.+ +.+.. ++ +.....+.++.+.+..++..+|.. ++... + +.......+...+.+
T Consensus 148 v~------Gae--~g~l~-Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VP------GTP--QHGHY-VIAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVA 211 (342)
T ss_pred cc------ccc--cchhe-EEeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHH
Confidence 31 100 11222 12 123345788999999999999963 23221 1 222221111222222
Q ss_pred ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCc---hhh---hhhhhhhccChhHHHHH
Q 014863 316 ---IVESLFRRFTENGM-NEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGE---DKK---EFEKAYSASYYPCMEIL 385 (417)
Q Consensus 316 ---~iea~~~~~v~~Gl-~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~---~~~---~~~~~~~~~~~~~~~~m 385 (417)
..| .+..+.+.|. +++++.+.+.|++. ++++|+.++|++.|-+.+... .++ .|++.- ..-....+++
T Consensus 212 ~a~~aE-~~~l~~~~~~~p~~~~~~~~~~~~~-~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 288 (342)
T PRK12557 212 LSGVLD-YYSVGTKIIKAPKEMIEKQILMTLQ-TMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQ-KDLDAALEIL 288 (342)
T ss_pred HHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhh-hhHHHHHHHH
Confidence 223 3344445555 55666777889998 999999999999998877522 111 233310 0122345788
Q ss_pred HHHHHhhhc
Q 014863 386 YECYEDVAA 394 (417)
Q Consensus 386 ~~~~~~v~~ 394 (417)
+++++++..
T Consensus 289 ~~~~~~~~~ 297 (342)
T PRK12557 289 ENLDEDLLK 297 (342)
T ss_pred HHHHHHHhh
Confidence 888888743
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=143.33 Aligned_cols=146 Identities=26% Similarity=0.265 Sum_probs=108.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
+||+|||+|+||.+||+||.+. |+.+.+++|..++..+.+.+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999999888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeccchhh-------hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 192 A-DNYE---KIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 192 ~-~Vl~---eI~p~Lk~GaiL~~a~G~~i~-------~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
. +|+. .+.+.+++|+++++++-+... .++..++.. -|.+|...-| +.. .|.-
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~-lDAPVsGg~~---~A~-------------~GtL 133 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF-LDAPVSGGVP---GAA-------------AGTL 133 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE-EecCccCCch---hhh-------------hCce
Confidence 6 6773 599999999999998876422 122211111 1223333322 111 2333
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
. |-+.. +.++.+.++-++..+|..
T Consensus 134 t-imvGG--~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 134 T-IMVGG--DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred E-EEeCC--CHHHHHHHHHHHHHhcCc
Confidence 3 22344 678889999999999963
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=150.46 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=132.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViL 184 (417)
..+++ +||||||+|+||+++|++|++. |++|+++++.. .. +.+.+.|+.. ..+.++++. ++|+||+
T Consensus 365 ~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~~-~~a~~~Gv~~----~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 365 NDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-YS-DEAQKLGVSY----FSDADDLCEEHPEVILL 431 (667)
T ss_pred CCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-HH-HHHHHcCCeE----eCCHHHHHhcCCCEEEE
Confidence 34566 8999999999999999999998 98887776653 22 5566778763 567888775 5999999
Q ss_pred eecchhHHHHHHHHHh-cCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 185 LISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p-~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
|||+....++++++.+ .+++|++|+++++.+ +..+.. .+|.+++||+.||+.....-+..|+. ......|..
T Consensus 432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~ 507 (667)
T PLN02712 432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVR 507 (667)
T ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcE
Confidence 9999999999998876 789999999887663 344443 56778899999997754431111111 000011111
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~ 330 (417)
........+..+..+.++..+|+ ++++++.++|++.-. ..+ .+|- .+...+++.|++
T Consensus 508 ---v~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~~A-----~vS-hLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 508 ---IGSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWHAA-----GSQ-FITH---TMGRLLEKLGLE 564 (667)
T ss_pred ---eCCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHHH-----HHH-HHHH---HHHHHHHHCCCc
Confidence 11222233556667899999995 788899999964321 122 2222 334667777775
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=130.45 Aligned_cols=224 Identities=13% Similarity=0.148 Sum_probs=163.0
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHHHHHcCceecCC
Q 014863 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~ 167 (417)
|||.|-|.||| |.+||++|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 56777777776 88999999999 999999887533 2345677788875
Q ss_pred CcCCHHhhhccCCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEeccchh---hh-hhccccC-CCCCCcEEEeccC-Cc
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GH-LQSMGLD-FPKNIGVIAVCPK-GM 240 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i---~~-~~~~~i~-~~~di~VI~v~Pn-~p 240 (417)
+.+..|+++++|+||+++|+..+. +|+..+.+++++|++|++++-+.. ++ ++. .+. -++|+.|...||- -|
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP 149 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVP 149 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCC
Confidence 678999999999999999988875 788889999999999998876642 22 222 122 2579999999993 34
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccchHHHH---
Q 014863 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGAVHGI--- 316 (417)
Q Consensus 241 g~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~~~a~--- 316 (417)
+..-.+.|.-+ |... + -..-++.++.++...|.+.+|..- ++. .++.+..+-.|-.+.+.
T Consensus 150 ~~~~~~~~~~~------~~~~-~-~~~~A~ee~i~~~~el~~~~~~~~~~~p--------a~l~~~v~Dm~s~vta~~~~ 213 (341)
T TIGR01724 150 GTPQHGHYVIG------GKPT-A-GKEMATEEQISKCVELAKSTGKKAYVVP--------ADVTSAVADMGSLVTAVALA 213 (341)
T ss_pred CCCCCceeeec------cccc-c-ccccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHHHHHHHHHH
Confidence 44422233332 1221 1 244578899999999999999751 222 25555555455555552
Q ss_pred -HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 317 -VESLFRRF-TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 317 -iea~~~~~-v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+-.-++.+ .-.|-|.+.+-+.+.+++. .++.|+.++|++.|-+.+.
T Consensus 214 gil~y~~~~t~i~~ap~~~~~~~~~~~l~-~~a~l~~~~Gi~~~~~~l~ 261 (341)
T TIGR01724 214 GVLDYYYVGTQIINAPKEMIEKQILMTLQ-TMASLVETSGVEGMAKAIN 261 (341)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 33345555 4689999999999999998 9999999999999988775
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-13 Score=131.98 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=116.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH----------HHHHHcCceec--------C-CCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~----------~~A~~~G~~~~--------d-~~~~~ 171 (417)
|+||+|||.|.||.++|..+... |++|++.+++.+... +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 57999999999999999999999 998887665433211 23334442100 0 00234
Q ss_pred HHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
.+ .+++||+||+++|++.. .++++++.++++++++| +.++|+.+..+.. .++..-+++++||+.|.+..
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---- 148 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---- 148 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC----
Confidence 44 57999999999998766 57999999999999987 6888998887765 33334489999999998883
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++. ++++...+.+..+.+..++..+|..
T Consensus 149 --------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 --------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred --------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4564 6678889999999999999999965
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=149.01 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=121.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~a 190 (417)
++|+|||+|+||+++|++|++. |++|+++++... .+.+.+.|+.. ..+.++++ .++|+|++|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~~--~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSDH--SLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH--HHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 988877666522 35677788764 56777755 57999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee-
Q 014863 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (417)
Q Consensus 191 ~~~Vl~eI~-p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav- 265 (417)
..++++++. +++++|++|+++..++.. .+.. .+|++.+||..||+. |+.. ...| -.|..++++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999999887632 2332 456788999999954 4431 0111 1234454542
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhh
Q 014863 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (417)
Q Consensus 266 ---~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~d 301 (417)
+.....+..+..+.+|..+|+ ++++++.++|++.-
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~~ 227 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKYA 227 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHH
Confidence 222223556777899999995 78888888886554
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-12 Score=134.97 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=132.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-------------------HcC-ceecCCCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~d~~~~ 170 (417)
++||+|||+|+||.++|.+|... |++|+++++..++. +... ..| +.. ..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~ 72 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAE-RIIGEVLANAERAYAMLTDAPLPPEGRLTF----CA 72 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHH-HHHHHHHHHHHHHHhhhccchhhhhhceEe----eC
Confidence 47999999999999999999999 99998888764432 2111 112 332 46
Q ss_pred CHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++++++++||+|+.++|++.. ..++.++.++++++.+| +-++|+.+..+.+ .+...-.++..||+.|....
T Consensus 73 ~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~~--- 146 (495)
T PRK07531 73 SLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYLL--- 146 (495)
T ss_pred CHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcccC---
Confidence 788999999999999998874 35778888888888765 3557877766654 33334479999999987651
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHH
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~ 326 (417)
. .. .++.....+.+..+.+..++..+|...++ .+...+ ..+++.+.+ ++.-++..+.+
T Consensus 147 ---------~-Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~-----~~k~~~-----gfi~nrl~~a~~~EA~~L~~~ 205 (495)
T PRK07531 147 ---------P-LV-ELVGGGKTSPETIRRAKEILREIGMKPVH-----IAKEID-----AFVGDRLLEALWREALWLVKD 205 (495)
T ss_pred ---------c-eE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEe-----ecCCCc-----chhHHHHHHHHHHHHHHHHHc
Confidence 1 22 35567778899999999999999965221 111111 123333332 33444555568
Q ss_pred cCCCHHHHHHHHHHH
Q 014863 327 NGMNEDLAYKNTVEC 341 (417)
Q Consensus 327 ~Gl~~e~A~~~~~~~ 341 (417)
.|+++++.....-+.
T Consensus 206 g~~s~~~id~~~~~g 220 (495)
T PRK07531 206 GIATTEEIDDVIRYS 220 (495)
T ss_pred CCCCHHHHHHHHhhc
Confidence 889999888765544
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=112.37 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=73.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---ceEEEE-ecCCchhHHHHHHcCceecCCCcC-CHHhhhccCCeEEEeec
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~-~~~Eav~~ADiViLavp 187 (417)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.+... .. +..|+++++|+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788866 666566667777888654 33 79999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-Eecc
Q 014863 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~-~a~G 213 (417)
|+...++++++ +...++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888765 5444
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=122.18 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||||||+|+||.+||++|.++ |++|.+++|.. +..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 78999999999999999999999 99998887764 4456666778876 7899999999999999999866
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~-~~Vl~e--I~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
+ .+++.+ +.+.+++|+++++..-.... .+.+ ..-.+++.+|-.-=.+.... -+. |--.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapV~Gg~~~----a~~-------g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVDAPVSGGPPG----AEE-------GTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEEEEEESHHHH----HHH-------TTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeeeeeeeccccc----ccc-------cceEEEc
Confidence 5 579987 99999999999988776532 2222 11134556653322221111 122 3323232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014863 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~ 286 (417)
.. +.++.+.++.++..+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 33 46788999999999985
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=126.98 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=111.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceec-------C-CCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N-GTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d-~~~~~ 171 (417)
|+||+|||+|.||.++|++|..+ |++|++.+++.++ .+. ..+.|.... + -...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999999 9998877765332 221 222231100 0 00233
Q ss_pred HHhhhccCCeEEEeec--chhHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavp--d~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
..+++++||+||.|+| ++....++.++.+.++++++|+ .++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 4444578889999999998874 889998877665 33334689999998887651
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
. . ..++++...+.+..+.+..++..+|..
T Consensus 150 --------~-l-veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 --------K-L-VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred --------c-e-EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1 2 246667788999999999999999965
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=120.84 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=109.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|||+||| .|+||.+++..|.+. |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 899999999999999 99988887765443333221 13210 001246678899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEE-Eeccchh-----------------hhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i-----------------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
+++|++.+.++++++.+.++. ++|+ .+.|+.. ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 6654 5567764 22333 455546899999999987753
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~ai-G~~ 287 (417)
.. ..+.+...++| .| +.++++.+.+|...+ |..
T Consensus 150 ~~------~~~~~~~~~v~--Gd-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 DV------DDEVDCDVLVC--GD-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred CC------CCCCCCCEEEE--CC-CHHHHHHHHHHHHhcCCCC
Confidence 21 11234444443 33 456999999999999 874
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=126.00 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=103.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC--------------ceecCCCcCCHHhhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~d~~~~~~~Eav 176 (417)
|+||+|||+|+||.++|.+|.+. |++|.+++|... ..+...+.| ... ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPE-QAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 68999999999999999999999 999888777533 334344432 221 45777888
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec-cchh-------hhhhccccCCCC-CCcEEEeccCCchhhHHHH
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~-G~~i-------~~~~~~~i~~~~-di~VI~v~Pn~pg~~vr~l 247 (417)
+++|+||+++|+....++++++.++++++++|+... |+.. ..+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 999999999999988899999999999998776444 7753 22222 2232 134566778765443
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.|.+.++... ..+.+..+.+..++...|..
T Consensus 143 --------~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 143 --------ARGLPTAVVIA-STDEELAERVQELFHSPYFR 173 (325)
T ss_pred --------HcCCCcEEEEE-eCCHHHHHHHHHHhCCCCEE
Confidence 12333322222 22567788888899888853
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=121.56 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=104.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh---hccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea---v~~ADiViLavpd 188 (417)
|||+|||+|+||.++|++|.+. |++|.+++|+. ...+...+.|... ..+.+++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQ-DAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 99988877664 3455566667653 3455554 4568999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
....++++++.+++++|++|++.+... ...... .-..+++++-....+.....+ .|. + +.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~---~~~~g~~~vda~vsGg~~~a~-----------~G~-~-~~ 133 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKL---LKEKGIHLLDCGTSGGVWGRE-----------RGY-C-FM 133 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHH---HHhcCCeEEecCCCCCHHHHh-----------cCC-e-ee
Confidence 977899999999999999998876542 111111 223567777755544322211 353 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014863 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~ 286 (417)
+.. +.++.+.+..++..+|.
T Consensus 134 ~gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 134 IGG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred eCC--CHHHHHHHHHHHHHhcC
Confidence 444 57899999999999986
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=121.93 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=122.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~---ADiViLavpd 188 (417)
++|||||+|+||.++|++|.+. |++|++++|+.+ ..+.+.+.|... ..++++++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4899999999999999999999 999888777643 345556678764 5688888876 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..+++++- +|=.-+.. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 8 667899999999999999998866532 22211 0 1123555542 33111111 011 344 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC--cccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSP--FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKNTV 339 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~--~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~G--l~~e~A~~~~~ 339 (417)
+.. +.++.+.++.++..+|.. .++..- .-.-....+. -+.++.+...++.| .+..+.+.| ++++..+..-.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aE-a~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAE-GLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcccCCCHHHHHHHHc
Confidence 454 467889999999999962 111110 0000000110 01111222222333 345667888 99998887654
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=121.05 Aligned_cols=200 Identities=14% Similarity=0.107 Sum_probs=124.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||+|||+|+||.++|.+|.+. |++|.+++++.+ ..+...+.|... ..+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 57999999999999999999999 999888777644 455555667653 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+ .+++. .+.+.+++|+++++.+-+... .+.. .....++.++ =+|-.-+.. .-+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 4 56764 477889999998877655432 2211 0112355654 344222211 111 2344333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
+.. +.+..+.+..++..+|.. ++... .-.=....+. .-.+++...+++--.+..+.+.|++++..+.....
T Consensus 137 -~gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~ 208 (296)
T PRK15461 137 -AGG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMSG 208 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 233 567899999999999964 22110 0000111111 01122333333333456678999999988765443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-11 Score=116.78 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=136.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-------------------------Cceec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------------------G~~~~ 165 (417)
|+||+|||.|.||.++|..+..+ |++|+++++..+ ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 48999999999999999999998 999888776533 23333211 1221
Q ss_pred CCCcCCHHhhhccCCeEEEeecch--hHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~--a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..+.++++++||+||.++|.+ ...++++++.+.++++++|+ ..+++.+..+.+ ..+..-+++..||--|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 457888999999999999966 34578899999999998875 445555554443 222334799999977754
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~ 322 (417)
. .-..-+.++...+.+.++.+.+++..+|...++-. .+ ...-+..-+...+-.-.-
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-------~pgfi~nRi~~~~~~ea~ 204 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-------QPGYILNSLLVPFLSAAL 204 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-------CCCHhHHHHHHHHHHHHH
Confidence 4 13334566788899999999999999996422111 01 112222222232222223
Q ss_pred HHHHcCC-CHHHHHHHHHH---HHHHHHHHHHHHhcHHHHHhcc
Q 014863 323 RFTENGM-NEDLAYKNTVE---CITGIISKIISTQGMLAVYNSF 362 (417)
Q Consensus 323 ~~v~~Gl-~~e~A~~~~~~---~l~~~~~~li~e~G~~~l~~~v 362 (417)
.+++.|+ ++++--..... .-. |--+++-..|++.+++..
T Consensus 205 ~l~~~g~a~~~~iD~a~~~~~g~~~-Gp~~~~D~~Gld~~~~~~ 247 (287)
T PRK08293 205 ALWAKGVADPETIDKTWMIATGAPM-GPFGILDIVGLDTAYNIT 247 (287)
T ss_pred HHHHcCCCCHHHHHHHHHhccCCCc-CHHHHHHHhchHHHHHHH
Confidence 3577785 46554432211 122 556677777876655544
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-11 Score=117.12 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=125.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (417)
|++|+|||.|.||.++|.+|.++ |++|+++++..+ ..+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999988877633 2232 2244532000 1246
Q ss_pred CHHhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a--~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
+++++++++|+|+.++|+.. ...++.++.+..+++.+|. -+.+..+..+.+ .++..-.++..||-.|....
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3467777777766655443 233444444544 33444579999997765441
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchH-HHHHHHHHHHHHH
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~-~a~iea~~~~~v~ 326 (417)
.. ..++++...+.+..+.+..++..+|... +... .+ ... .++.-+ .+++..++..+.+
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~~-v~v~--~~-~~G------~i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQSP-VRLR--RE-IDG------FVLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCEE-EEec--CC-Ccc------HHHHHHHHHHHHHHHHHHHc
Confidence 11 2356677788899999999999999642 2110 11 111 122222 2344445556667
Q ss_pred cCCCHHHHHHHHH
Q 014863 327 NGMNEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|+++++......
T Consensus 208 g~~~~~~id~~~~ 220 (308)
T PRK06129 208 GVASVDDIDAVIR 220 (308)
T ss_pred CCCCHHHHHHHHH
Confidence 7799998877543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-11 Score=116.44 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cC-------------ceecC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G-------------~~~~d 166 (417)
|+||+|||.|.||.++|.+|.++ |++|+++++..+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 57999999999999999999999 999888776533 3333221 11 121
Q ss_pred CCcCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
..+.++++++||+||.|+|.+... .++.++.++++++++| +..+.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 357788999999999999988753 5778899999999877 4667777665544 2222236788888766433
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+--..++.+...+.+..+.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 123345667778899999999999999964
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=120.30 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=125.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||+|||+|+||.+|+++|.+. |++|.++++.. + .+...+.|... +.+..|+++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99888877653 2 34455677764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 -~~Vl~---eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.++- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 46763 377788999999998877533 1211 11134677776 57333332 2233 3333232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
.. +.+..+.++.++..+|... +..- .-.=....+. -+..+.....++.|++ ..+.+.|++++..+..
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~-~~~G~~G~g~~~Kl~-~N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~~ 203 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNI-TLVGGNGDGQTCKVA-NQIIVALNIEAVSEAL-LFASKAGADPVRVRQA 203 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCc-EEeCCccHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHH
Confidence 33 5688999999999999642 1111 0011111111 1222222233344543 4568899999988853
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=117.48 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=111.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--------------cCceecC---------C
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--------------~G~~~~d---------~ 167 (417)
++||+|||+|.||.++|..|..+ |++|++.+++. +..+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 99988776653 33332211 1211000 0
Q ss_pred CcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhH
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (417)
...+. +++++||+||+++|++.. .++++++.++++++++|+ -++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12344 678999999999998864 578889999999998764 667887776654 33344589999999998873
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 245 r~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++. +..++.++.+..+.+..++..+|..
T Consensus 152 ------------~~vE--v~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIE--VVRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2344 2368888999999999999999964
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-11 Score=116.35 Aligned_cols=193 Identities=17% Similarity=0.146 Sum_probs=122.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHH
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~ 192 (417)
||+|||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+.++++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 99988777654 4456666777764 567889999999999999987654
Q ss_pred -HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 193 -~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
.++ +.+.+.+++|++|++.+..... .+.+ ....++++++- +|-. +... ... .|...++ +
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~-~ 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIM-V 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEE-e
Confidence 455 3477888999999887665432 2222 01123667776 5722 1110 011 2343333 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc-cchHHH-H---HHHHHHHHHHcCCCHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-I---VESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL-~G~~~a-~---iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
.. +.+..+.+..++..+|.. ++..- .... ++..-| ...+.+ . +--++..+.+.|+++++.+...-
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g---~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVG---GNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 43 468889999999999964 22111 0000 000111 111221 2 22245566799999998886443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=122.80 Aligned_cols=194 Identities=16% Similarity=0.100 Sum_probs=116.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--------CceecC--CCcCCHHhhhccCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~Eav~~AD 180 (417)
+|||+|||+|+||.++|.+|.+. |++|.++.|.... .+...+. |..... ....+++|+++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD 76 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGAD 76 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCC
Confidence 37999999999999999999999 9999888875332 2333322 311000 01457888899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch-----hhhhhcccc--CCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~-----i~~~~~~~i--~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|++++|+....++++ .++++.+|+ .+.|+. ...+.+ .+ ....+ -.++..|+.+...
T Consensus 77 ~Vi~~v~~~~~~~v~~----~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~-~~~~~gP~~a~~~--------- 141 (328)
T PRK14618 77 FAVVAVPSKALRETLA----GLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQAR-VAVLSGPNHAEEI--------- 141 (328)
T ss_pred EEEEECchHHHHHHHH----hcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCC-eEEEECccHHHHH---------
Confidence 9999999997766664 456676654 666764 222221 00 00122 2457788776655
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccc---------cccchHHH--------
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG---------ILLGAVHG-------- 315 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqt---------vL~G~~~a-------- 315 (417)
+.|.+.+... ...+.+..+.+..++...|....+ ..|..+.+- +-+|.+.+
T Consensus 142 ---~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~v~~--------~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~ 209 (328)
T PRK14618 142 ---ARFLPAATVV-ASPEPGLARRVQAAFSGPSFRVYT--------SRDRVGVELGGALKNVIALAAGMVDGLKLGDNAK 209 (328)
T ss_pred ---HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEEEEe--------cCCccchhhhHHHHHHHHHHHHHHHHhCCCccHH
Confidence 2444432222 223567788889999888854111 113333221 11333333
Q ss_pred ------HHHHHHHHHHHcCCCHHHHHHHH
Q 014863 316 ------IVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 316 ------~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
.+.-+...+.+.|++++..+..+
T Consensus 210 ~~~~~~~~~E~~~la~~~G~~~~~~~~~~ 238 (328)
T PRK14618 210 AALITRGLREMVRFGVALGAEEATFYGLS 238 (328)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccchhcCc
Confidence 23335667788899998887753
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=119.37 Aligned_cols=198 Identities=16% Similarity=0.103 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~---ADiViLavpd 188 (417)
|||||||+|+||.++|++|.+. |++|.+++++.+ ..+.+.+.|... ..+++|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999999 999888777643 345556678775 5678888875 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
. ...++++.+.+.+++|+++++.+.... ..+.+ ..-..++.++- +|-.=+... =+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-eEE-
Confidence 8 557888889999999998887754432 11211 11134677774 774333221 01 344 333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC---cccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSP---FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTE--NGMNEDLAYKNT 338 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~---~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~--~Gl~~e~A~~~~ 338 (417)
+.. +.+..+.++.++..+|.. .++..- .-.-...++. .+.++.+.+.++.| ++..+.+ .|++++..+..-
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~-~n~l~~~~~~~~aE-a~~l~~~~~~gld~~~~~~~~ 210 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMV-HNGIEYGMMQAYAE-GFELLEASRFDLDLAAVAEVW 210 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHHH
Confidence 343 567889999999999962 111110 0000001111 11222222222333 3445566 999999887754
Q ss_pred H
Q 014863 339 V 339 (417)
Q Consensus 339 ~ 339 (417)
-
T Consensus 211 ~ 211 (301)
T PRK09599 211 R 211 (301)
T ss_pred h
Confidence 3
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=125.78 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=104.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhcc---CCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~---ADiViL 184 (417)
+.+|||||+|+||.+||+||.+. |++|.|++|+.++..+.... .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999875554433321 14320 0014688888876 999999
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
++|+.... +|++.+.|.|++|++|++.+-... ....+ ..-.++++++- +|=.=+... =+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~g---A~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEEG---AR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHHH---hc-------CCC-
Confidence 99988775 688889999999999998865432 11111 11134666553 441111110 01 344
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+ +-+.. +.++.+.++-++..+|..
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 568999999999999963
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=117.40 Aligned_cols=229 Identities=13% Similarity=0.123 Sum_probs=134.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC---------ceecC--CCcCCHHhhhccC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~d--~~~~~~~Eav~~A 179 (417)
++||+|||.|+||.++|..|.+. | +++++.+. +...+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 48999999999999999999998 8 45555554 22233333322 11000 0134677889999
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchh-------hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
|+||+++|++...++++++.|++++++ +|+...|+.. ..+.+ .+|.....+...|+.+..+
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998886 4568888864 24443 3343334678889887655
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH---HHHHHHHHHHHcC
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENG 328 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a---~iea~~~~~v~~G 328 (417)
+.|.++.+.+..+ +.+..+.+.+++..-|. ......|+.+.+ ++|.+-- +.-.+.+ +...|
T Consensus 148 ----~~g~~t~~via~~-~~~~~~~v~~lf~~~~~--------~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g 211 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQHLATRLSPLFRTRRF--------RVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIG 211 (341)
T ss_pred ----HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCE--------EEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCC
Confidence 3566654433332 34444454555544442 223344666655 6777665 2222333 33445
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHH--------HHhcHHHHHhcccCc--hhhhhhhhhh
Q 014863 329 MNED-LAYKNTVECITGIISKII--------STQGMLAVYNSFSGE--DKKEFEKAYS 375 (417)
Q Consensus 329 l~~e-~A~~~~~~~l~~~~~~li--------~e~G~~~l~~~vs~~--~~~~~~~~~~ 375 (417)
-... ......++|+. -+++.+ .-.|++.|.--|+++ ....||..+.
T Consensus 212 ~n~~aali~~~~~E~~-~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~ 268 (341)
T PRK12439 212 ENTRAMVIARALREMT-KLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLG 268 (341)
T ss_pred chHHHHHHHHHHHHHH-HHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHH
Confidence 3222 22333444544 233222 124456666667664 2245666544
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=112.82 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=120.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+++|+|||+|.||.++|++|.+. |++|++++++ ....+.+.+.|... +.+.+|+++++|+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 9988776655 34455566677664 5678899999999999999877
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+. .++ +++.+.+++|++|++++.+... .+.+ .....+++++- +|-.-+... -. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~--~~~~~g~~~~d-~pv~g~~~~---a~-------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA--ALKAKGIEMLD-APVSGGEPK---AI-------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-cCCCCCHHH---Hh-------hCcEEEE
Confidence 64 455 4588899999999988776532 2222 01112444432 241111110 00 2333333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
. .. +.+..+.+..++..+|.. ++... ...=....+. ....+.+.. +++--++..+.+.|+++++.+...
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~Kl~-~n~~~~~~~-~~~~Ea~~l~~~~Gi~~~~~~~~l 207 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGS-VVHTGDIGAGNVTKLA-NQVIVALNI-AAMSEALVLATKAGVNPDLVYQAI 207 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-eEEeCCcCHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 468889999999999964 22110 0000000011 111111111 233334666788999999877543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=113.00 Aligned_cols=193 Identities=18% Similarity=0.121 Sum_probs=122.4
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH-HHH
Q 014863 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~-~~V 194 (417)
|||+|+||.++|++|.+. |++|.+++|+.+ ..+...+.|... ..++.++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999888877644 456666678764 56889999999999999998554 678
Q ss_pred H---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCC
Q 014863 195 Y---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 195 l---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
+ +++.+.+++|++|++.+++... .+.+ .....+++++-. |=.-+. ...+. |-..+++ ..
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~--~~~~~g~~~vda-Pv~Gg~---~~a~~-------g~l~~~~-gg- 134 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE--LAAAHGAVFMDA-PVSGGV---GGARA-------GTLTFMV-GG- 134 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEEC-CCCCCH---HHHhh-------CcEEEEE-CC-
Confidence 7 6788999999999998887643 2222 111246677653 522221 12233 3333333 33
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 269 VDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 269 ~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
+.+..+.+..++..+|.. ++..- ...-....+. .+..+.+...++.| .+..+.++|++++..+...
T Consensus 135 -~~~~~~~~~~~l~~~g~~-~~~~g~~g~g~~~Kl~-~n~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~ 201 (288)
T TIGR01692 135 -VAEEFAAAEPVLGPMGRN-IVHCGDHGAGQAAKIC-NNMLLGISMIGTAE-AMALGEKLGLDPKVLFEIA 201 (288)
T ss_pred -CHHHHHHHHHHHHHhcCC-eEeeCCCCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 457788899999999964 22111 0000111111 11111222222333 3456789999999887643
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-10 Score=119.87 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=102.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhc---cCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~---~ADiViL 184 (417)
|.+|||||+|+||.++|+||.++ |++|.+++|+.++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999888875543332221 25321 12568888886 5899999
Q ss_pred eecchhH-HHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~a~-~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
++|+... .++++++.|+|++|++|++.+... .....+ ...++++++-+-=.+ |.. .-+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fldapVSG-G~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLGMGVSG-GEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEcCCCCC-CHH---HHh-------cCC
Confidence 9877655 579999999999999999886432 111111 223566665432222 111 111 243
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+ +-+.. +.++.+.++-++..+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 578999999999999963
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=112.85 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=109.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d---------~~~~ 170 (417)
++||+|||.|.||.++|.+|..+ |++|+++++... ..+.+.+ .|..... ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 999988776533 2333221 2321000 0134
Q ss_pred CHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++ +.+++||+||.++|...+ ..++.++.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 55 457899999999997644 467889999999999875 778888776655 22223478888887776652
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++ - +.++...+.+..+.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 223 2 4557778899999999999999964
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=121.16 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=103.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---C--ceecCCCcCCHHhhh---ccCCeEEE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~d~~~~~~~Eav---~~ADiViL 184 (417)
+|||||+|+||.+||+||.+. |++|.+++|+.++. +...+. | +.. ..++++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 99999888875544 333333 2 332 45677766 46899999
Q ss_pred eecch-hHHHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 185 LISDA-AQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
++|+. +..++++++.|+|++|++|++.+... ...... .-.+++.++-....+-....+ .|.
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsGG~~gA~-----------~G~ 135 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSGGEEGAR-----------KGP 135 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCCCHHHHh-----------cCC
Confidence 99984 55689999999999999999887532 111111 224577877666655332221 343
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+ +-+.. +.++.+.++-++..++..
T Consensus 136 -~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 -S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 3 33454 568999999999999963
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=108.31 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||+|||.|+.|.++++.|.+. |+.|...+.++..+.+++.+. .. +....+.+|+++++|+|+|+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 7999999999999999999999 997654443333344444432 11 12255778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEeccch-hhhhhccccCCCCCCcEEEecc
Q 014863 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 192 ~~Vl~eI~p~--Lk~GaiL~~a~G~~-i~~~~~~~i~~~~di~VI~v~P 237 (417)
.++.++|... .++|++|+.++|-. ...++- .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999998853 332221 0023556667776
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=108.83 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=105.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
||+|+|||.|+||.++|+.|.+. |++|+++.++.+++.+.+. +.+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 9999999887665554433 334332 1568999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecc-----ch-------------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHG-----FL-------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G-----~~-------------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
.+.++++++...+. |++|+++.- +. -..+++ .+|.. +||..-=+.+.... +.+
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~l----~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAVL----ADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHHh----ccC
Confidence 99999999998886 888876531 11 011111 22222 44443334443332 222
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.+. +.....++| . .+.++++.+.+|...+|..
T Consensus 143 ~~~-~~~~~v~va-g--DD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 AKP-GGRRDVLVA-G--DDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CCc-CCceeEEEe-c--CcHHHHHHHHHHHHhcCcc
Confidence 111 112333333 2 3678999999999999875
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=111.54 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=111.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC-----CCcCCHHh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d-----~~~~~~~E 174 (417)
++||+|||.|.||.++|..+..+ |++|+++++... ..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 999988776532 12211 122221100 12457889
Q ss_pred hhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 175 av~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
++++||+|+-++|..... +++.++..+++++++|. -++++.+..+.. .....-+++..||--|.+.++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 999999999999977663 58889999999998764 445676665554 222234799999988877731
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.- =|.++...+.+.++.+.+++..+|..
T Consensus 151 -------LV-EVv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 -------LV-EVLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------eE-EEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 11 14457788999999999999999964
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-09 Score=106.90 Aligned_cols=253 Identities=16% Similarity=0.212 Sum_probs=146.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------ceEEEEecCCch---h-HHHHHHc--------CceecC--CCcC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---S-FAEARAA--------GFTEEN--GTLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~Vivg~r~~~~---s-~~~A~~~--------G~~~~d--~~~~ 170 (417)
+||+|||.|++|.++|..|.+. | ++|.++.|+..- . .+.-.+. |+...+ ....
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 6899999999999999999988 6 688887766421 1 1111111 111100 0145
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHHh--cCCCCcE-EEEeccchhh---------hhhccccCCCCCCcEEEeccC
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPK 238 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~p--~Lk~Gai-L~~a~G~~i~---------~~~~~~i~~~~di~VI~v~Pn 238 (417)
|+++++++||+|+++||++...++++++.+ +++++++ |+.+.|+... .+.+ .++.. -.+..-|+
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~-~~~LsGPs 161 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIP-CCALSGAN 161 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCC-eEEEECCC
Confidence 778899999999999999999999999999 8887764 5688887522 1222 22222 23466777
Q ss_pred CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHH
Q 014863 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE 318 (417)
Q Consensus 239 ~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~ie 318 (417)
.+..+. .|.++.+++... +. +.+..+...+... .|.-.+..|+.|-+ |||++--++-
T Consensus 162 ~A~Eva------------~~~pt~~vias~-~~---~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNviA 218 (365)
T PTZ00345 162 VANDVA------------REEFSEATIGCE-DK---DDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNIIA 218 (365)
T ss_pred HHHHHH------------cCCCcEEEEEeC-CH---HHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHHHH
Confidence 766553 456665554432 23 3344444555555 23334455888877 8888877432
Q ss_pred --HHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhccC--hhHHH
Q 014863 319 --SLFRRFTENGMNEDLA-YKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YPCME 383 (417)
Q Consensus 319 --a~~~~~v~~Gl~~e~A-~~~~~~~l~~~~~~li~----------e~G~~~l~~~vs~~~~~~~~~~~~~~~--~~~~~ 383 (417)
++.-.+...|..-.-| +...+.||. -+++.+. -.|++.|.--|++-....||..+.... ++..+
T Consensus 219 Ia~Gi~dGl~~G~N~kaalitrgl~Em~-~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~ 297 (365)
T PTZ00345 219 LAAGFCDGLGLGTNTKSAIIRIGLEEMK-LFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEE 297 (365)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHH
Confidence 2222233344432222 333445555 3333332 145566766676633356787655332 34444
Q ss_pred HHHHHHH-hhhcchhH
Q 014863 384 ILYECYE-DVAAGSEI 398 (417)
Q Consensus 384 ~m~~~~~-~v~~g~~~ 398 (417)
++++++. .+..|-.+
T Consensus 298 ~~~~~~~~~~vEG~~t 313 (365)
T PTZ00345 298 IEAELLNGQKLQGTVT 313 (365)
T ss_pred HHHHhhCCcEechHHH
Confidence 4444322 33445554
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=109.88 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=118.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-------------------HcC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~d~~~~~ 171 (417)
|||+|||+|.||.++|.+|.+. |++|+++++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999999 9998776654332 22211 123 332 357
Q ss_pred HHhhhccCCeEEEeecchh----------HHHHHHHHHhcCCCCcEEEEeccchh----hh---hhccccCCCCCCc-EE
Q 014863 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLL----GH---LQSMGLDFPKNIG-VI 233 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a----------~~~Vl~eI~p~Lk~GaiL~~a~G~~i----~~---~~~~~i~~~~di~-VI 233 (417)
..++++++|+||+++|... ...+++.|.+++++|++|++.+++.. .. +.+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 45677889999999999887775421 11 1110000111233 36
Q ss_pred EeccCC--chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCcccccchhhhhhhhccccccccc
Q 014863 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (417)
Q Consensus 234 ~v~Pn~--pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG-~~~~iett~~~E~~~dlfgeqtvL~ 310 (417)
..+|.. +|..+.+.+. .+.++. . .+.+..+.+..++..++ ...+..++. ..-+.--+-+.+ +.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIKLAENT-FR 215 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHHHHHHH-HH
Confidence 777743 2222211111 223232 3 36789999999999997 332222221 111111111222 12
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 311 GAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 311 G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
+.--+++.-+...+.+.|+++++.+..
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222335555677778888888877653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=130.70 Aligned_cols=199 Identities=12% Similarity=0.048 Sum_probs=121.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
++|||||+|+||.+||+||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888876443 45555678775 67899999999999999998777
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCC--CcEEEecc-CCchhhHHHHHhhcccccCCCceE
Q 014863 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCP-KGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 192 ~-~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~d--i~VI~v~P-n~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
. +|+ +.+.+.+++|+++++.+-+... .+.+ ..-..+ +.++- +| .+.... -+. |--.
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~--~l~~~g~~~~~lD-aPVsGg~~~----A~~-------G~L~ 139 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK--KLTERKEQIFLVD-AYVSKGMSD----LLN-------GKLM 139 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH--HHHhcCCceEEEE-ccCcCCHHH----Hhc-------CCeE
Confidence 5 676 3588899999999988765422 2221 011223 44442 33 221111 112 3332
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccc-cchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFA-TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~ie-tt~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
++ +.. +.+..+.+..++..+|...... -..-.=....+..- ..+.+...++.| ++..+.+.|++++..+.....
T Consensus 140 im-vGG--~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN-~l~~~~~~a~aE-Al~la~~~Gld~~~l~~vl~~ 214 (1378)
T PLN02858 140 II-ASG--RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNE-LLEGIHLVASAE-AMALGVRAGIHPWIIYDIISN 214 (1378)
T ss_pred EE-EcC--CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHH-HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHhc
Confidence 22 233 4567889999999999541100 00000000111100 011111112233 234578999999988875543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=113.18 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=135.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcC-------------ceec
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G-------------~~~~ 165 (417)
.+++|+|||.|.||..||.++..+ |++|++.+++.+ ..+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 358999999999999999999999 999988877643 2333 24455 232
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..++++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 456655 56999999999987774 4777888888899988 4778887766654 222223689999988877
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLF 321 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~ 321 (417)
.+ ... .++.+...+.+..+.+..++..+|...+. . .+ ..+.+..-+.. ++..++
T Consensus 151 v~-------------~Lv-Evv~g~~Ts~~~~~~~~~l~~~lgk~pv~-v---~d-------~pGfi~Nrll~~~~~Ea~ 205 (507)
T PRK08268 151 LM-------------KLV-EVVSGLATDPAVADALYALARAWGKTPVR-A---KD-------TPGFIVNRAARPYYTEAL 205 (507)
T ss_pred cC-------------eeE-EEeCCCCCCHHHHHHHHHHHHHcCCceEE-e---cC-------CCChHHHHHHHHHHHHHH
Confidence 73 122 24456678889999999999999964211 1 11 01112222222 333333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHH---HHHHHHHHhcHHHHH
Q 014863 322 RRFTENGMNEDLAYKNTVECITG---IISKIISTQGMLAVY 359 (417)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~~~l~~---~~~~li~e~G~~~l~ 359 (417)
..+.+.|.++++.....-+. .+ |.-.++-..|++..+
T Consensus 206 ~l~~~g~~~~~~iD~al~~~-~G~~mGPf~l~D~~Gldv~~ 245 (507)
T PRK08268 206 RVLEEGVADPATIDAILREA-AGFRMGPFELMDLIGLDVNH 245 (507)
T ss_pred HHHHcCCCCHHHHHHHHHhc-CCCCcCHHHHHHHhchHHHH
Confidence 44445557787666543221 11 455666666664433
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=125.28 Aligned_cols=203 Identities=16% Similarity=0.125 Sum_probs=122.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+++|||||+|+||.+||.+|.+. |++|.++++...+ .+...+.|... ..++.+++++||+||+++|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9999888776433 44555567654 5688999999999999999555
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhhh---hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~p~Lk~GaiL~~a~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+ .+|+. .+.+.+++|+++++.+-+.... +.+.-..-..++.++ =+|=..++.. - ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---h-------hcCCceEE
Confidence 4 57772 4788899999998877654221 211000001355544 2342222221 1 13433333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCccccc-chhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iet-t~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
+ .. +.+..+.++.++..+|....+-. ..-.=....+. .+ .++++.-+.+--++..+.++|++++..+.....
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-nN-~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~ 534 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-NQ-LLAGVHIASAAEAMAFGARLGLNTRKLFDIISN 534 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 33 46789999999999996421100 00000011111 01 122222222222445668999999988875443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=101.92 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
.+ |||+|||+|+||.++|+.|.+. |++|.+++|... .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 7999999999999999999999 999988877532 2567888999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEec
Q 014863 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (417)
Q Consensus 189 ~a~~~Vl~eI~p~-Lk~GaiL~~a~ 212 (417)
..+.++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9888999888875 78888776543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-10 Score=102.95 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=78.7
Q ss_pred hhccCcc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 93 IVRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 93 ~~~~g~~--~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
.+++|+| ........+.| ++|||||+|.+|..+|+.|+.. |.+|+++++.... .......++. ..
T Consensus 17 ~~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~ 83 (178)
T PF02826_consen 17 AQRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YV 83 (178)
T ss_dssp HHHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ES
T ss_pred HHHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----ee
Confidence 3467788 22223489999 9999999999999999999988 9998877776432 2335566775 46
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a 211 (417)
+.+|++++||+|++++|..... .++. +.+..||+|++++-+
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 9999999999999999965553 5664 688899999988844
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=98.91 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=80.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec----------CCCcCCHHhhhccCCeE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------d~~~~~~~Eav~~ADiV 182 (417)
||+|||.|++|.++|.-|.+. |++|.++.|+. +..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99998887764 33333333222100 00146789999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch------hh-hhhccccCCCCCCcEEEeccCCchhh
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------LG-HLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~------i~-~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
++++|.+.+.++++++.|+++++++|+ ...||. +. .+.+ .+|...-++..-|+-+..+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~---~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEE---ILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHH---HHSSCGEEEEESS--HHHH
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHH---HhhhcceEEeeCccHHHHH
Confidence 999999999999999999999998765 555772 22 2332 2333334556667665554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-10 Score=111.33 Aligned_cols=150 Identities=23% Similarity=0.254 Sum_probs=100.0
Q ss_pred hhhccCcccccc--------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 92 YIVRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 92 ~~~~~g~~~f~~--------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
..+|+|+|.... ....|.| ++|||||+|+||.++|+.|+.. |++|+++++.... ......|+.
T Consensus 124 ~~~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~ 194 (333)
T PRK13243 124 HFVRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE 194 (333)
T ss_pred HHHHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE
Confidence 345677775310 1257899 9999999999999999999988 9998776654322 233445654
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHH-HHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEE
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~ 234 (417)
..+.+|++++||+|++++|..... .++ ++.+..||+|++|+.++ |-. +..+++ +..-...+||.-
T Consensus 195 -----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gAaLDV~~ 268 (333)
T PRK13243 195 -----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAGAGLDVFE 268 (333)
T ss_pred -----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEEEEeccCC
Confidence 358899999999999999977654 566 47889999999988554 421 222332 111123457777
Q ss_pred eccCCchhhHHHHHhhcccccCCCceEEEeecCC
Q 014863 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 235 v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
..|-. .+ .++.. -+.+++||--
T Consensus 269 ~EP~~-~~---pL~~~--------~nvilTPHia 290 (333)
T PRK13243 269 EEPYY-NE---ELFSL--------KNVVLAPHIG 290 (333)
T ss_pred CCCCC-Cc---hhhcC--------CCEEECCcCC
Confidence 77742 21 12222 3567888764
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-09 Score=100.35 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=73.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-C------CCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N------GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d------~~~~~~~Eav~~ADiViL 184 (417)
|||+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+... + ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 999888777533 3444555565320 0 113345554 89999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcE-EEEeccch
Q 014863 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~ 215 (417)
+||+.+..++++.+.+++.++++ |+...|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 99999999999999999988765 45777876
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-08 Score=99.96 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--Cce------ecC--CCcCCHHhhh-ccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~d--~~~~~~~Eav-~~AD 180 (417)
|||+|||.|+||.++|..|.++ |++|.++.|... ..+.-.+. +.. ..+ ....+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 999887777532 22222221 111 000 0124556666 5899
Q ss_pred eEEEeecchhHHHHHHHHHh-cCCCCc-EEEEeccch
Q 014863 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p-~Lk~Ga-iL~~a~G~~ 215 (417)
+||++||++...++++++.| ++++++ +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 556777873
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-08 Score=104.44 Aligned_cols=203 Identities=15% Similarity=0.076 Sum_probs=119.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh---------------
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea--------------- 175 (417)
++||+|||+|.||.++|.+|++. |++|+++++. ....+. ...|..+. .-...++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9998766654 333333 33343210 01112222
Q ss_pred hccCCeEEEeecc----------hhHHHHHHHHHhcCCCCcEEEEeccchh---h----hhhccccC--CC----CCCc-
Q 014863 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLL---G----HLQSMGLD--FP----KNIG- 231 (417)
Q Consensus 176 v~~ADiViLavpd----------~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~----~~~~~~i~--~~----~di~- 231 (417)
+++||+||+|+|+ ..+.++++.|.+++++|++|++.+.+.. . .+.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3489999999997 4666788889999999999887654431 1 12211111 11 0112
Q ss_pred EEEecc--CCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc
Q 014863 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL 309 (417)
Q Consensus 232 VI~v~P--n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL 309 (417)
.+...| -.+|....+... .+.++ .. .+.+..+.+..++..++....+.++. .+-+.--+-+.+ +
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vv--gG-~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~ 218 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVI--GG-MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS-F 218 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEE--Ee-CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-H
Confidence 355677 445555433221 33332 22 36788999999999998542222221 222222222222 2
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
...--+++.-+...+.+.|+++++..+.
T Consensus 219 ~a~~ia~~nE~~~lae~~GiD~~~v~~~ 246 (415)
T PRK11064 219 RDVNIAFANELSLICADQGINVWELIRL 246 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2233335555677777888888877653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=99.24 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=135.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (417)
|+||||||.|.||..+|..+... |++|+++++..+ ..+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 57999999999999999999999 999988877643 2222 3334432100 0134
Q ss_pred CHHhhhccCCeEEEeecchhHH--HHHHHHHhcC-CCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~L-k~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
+. +.+++||+||-++|.+... +++.++...+ +++++|. -++++.+..+.. .....-+++.+|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988775 5777888877 8899876 455666665554 22222369999998887773
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCCcccccchhhhhhhhcccccccccc-hHHHHHHHHHHHH
Q 014863 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRF 324 (417)
Q Consensus 247 ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~-aiG~~~~iett~~~E~~~dlfgeqtvL~G-~~~a~iea~~~~~ 324 (417)
+..- +.+....+.+..+.+..++. .+|...+. . .+ ..+-+.. .+..++..++ .+
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~-v---~d-------~pGfi~nRi~~~~~~Ea~-~l 207 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQVVR-A---QD-------RSGFVVNALLVPYLLSAI-RM 207 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCCceE-e---cC-------CCChHHHHHHHHHHHHHH-HH
Confidence 1223 55688889999999999988 59964111 1 11 1111111 1222233233 44
Q ss_pred HHcCC-CHHHHHHHHHHH--HHHHHHHHHHHhcHHHHHhccc
Q 014863 325 TENGM-NEDLAYKNTVEC--ITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 325 v~~Gl-~~e~A~~~~~~~--l~~~~~~li~e~G~~~l~~~vs 363 (417)
++.|+ ++++.=...... ...|.-.++...|++.+++...
T Consensus 208 l~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~~~~~~~ 249 (286)
T PRK07819 208 VESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDTVKAIAD 249 (286)
T ss_pred HHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHHHHHHHH
Confidence 56775 455533322211 0125666777777766665544
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=108.61 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=109.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (417)
++||+|||.|.||..||.++.++ |++|++++++.+. .+. ..+.|..... ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 58999999999999999999999 9999888776443 222 2334421000 0145
Q ss_pred CHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++++ +.+||+||.++|..... .++.++.+.++++++|. .++.+.+..+.. ......+++..|.=-|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 6654 57999999999976653 57788888888888764 566676665443 22333478999998888773
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
...- +......+.+..+.+..++..+|..
T Consensus 151 ----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1332 4457778899999999999999964
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-09 Score=103.75 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=121.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~a 190 (417)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+- -..+..+|..- .+.+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsdy--ssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSDY--SSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcchh--HHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 999888888753 34555666542 44555555 57999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccC-CchhhHHHHHhhcccccCCCceEEEee
Q 014863 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 191 ~~~Vl~eI~p~-Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn-~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
+..++...-+. +|.|+++++.-.++ ..-+++ .+|+|+|++.+||. ||-.+ --.++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv---------nh~wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV---------NHEWQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC---------CCccccCceEEEE
Confidence 99999876665 89999988665544 333444 78999999999994 33312 1125788876543
Q ss_pred cCC----CCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 014863 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (417)
Q Consensus 266 ~qd----~sgea~e~a~al~~aiG~~~~iett~~~E~~~ 300 (417)
+.- ...+.-|...+++.-.|+. .++.+.++|++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegck-mVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCCe-EEEEEeeccccc
Confidence 331 2257889999999999974 667777788443
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=111.17 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=105.5
Q ss_pred hhhccCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 92 YIVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~~~~g~~~f~~---~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
..+++|+|.... ....|.| ++|||||+|+||..+|+.|+.. |++|+++++...+ .+.....|+..
T Consensus 171 ~~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~~-~~~~~~~g~~~---- 238 (385)
T PRK07574 171 RQAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRLP-EEVEQELGLTY---- 238 (385)
T ss_pred HHHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCCc-hhhHhhcCcee----
Confidence 346778886432 2357999 9999999999999999999988 9998877765322 23334456553
Q ss_pred cCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCC
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~ 239 (417)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+.++ |-. +..+++ +..-....||.-..|--
T Consensus 239 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV~~~EPlp 317 (385)
T PRK07574 239 HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDVWFPQPAP 317 (385)
T ss_pred cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEecCCCCCCC
Confidence 458999999999999999977765 5775 6889999999988553 421 222333 11112345666666643
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~q-d~sgea~e 275 (417)
+.+- ++.. -+.+++||- ..+.++.+
T Consensus 318 ~d~p---L~~~--------pNvilTPHiag~T~e~~~ 343 (385)
T PRK07574 318 ADHP---WRTM--------PRNGMTPHISGTTLSAQA 343 (385)
T ss_pred CCCh---HHhC--------CCeEECCccccCcHHHHH
Confidence 2222 2221 356788875 33444444
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=108.76 Aligned_cols=93 Identities=24% Similarity=0.275 Sum_probs=76.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
++|||||+|+||.+|+.||.+. |+.|+|++|.-++ .+..++.|... ..++.|+++++|+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999987544 55666678875 67899999999999999998877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeccch
Q 014863 192 A-DNYE---KIFSCMKPNSIL-GLSHGFL 215 (417)
Q Consensus 192 ~-~Vl~---eI~p~Lk~GaiL-~~a~G~~ 215 (417)
+ +++. .+...+++|... ++++-+.
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTid 133 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTID 133 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccC
Confidence 5 6775 366677788866 6776543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=110.58 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=82.9
Q ss_pred hhccCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~~~~g~~~f~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
.+++|+|... .....|.| ++|||||+|.||..+|+.|+.. |++|+++++.. ...+...+.|+.. .
T Consensus 179 ~~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~ 246 (386)
T PLN03139 179 QVVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----E 246 (386)
T ss_pred HHHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----c
Confidence 4677888642 12357999 9999999999999999999988 99987766542 2223344556653 4
Q ss_pred CCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
.+.+|++++||+|++++|..... .++. +++..||+|++|+.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 58999999999999999976664 5775 6899999999988664
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-08 Score=99.80 Aligned_cols=232 Identities=18% Similarity=0.242 Sum_probs=141.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--------CceecC--CCcCCHHhhhccCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~Eav~~AD 180 (417)
++||+|||.|+-|.++|+-|.++ |++|.++.|+..- .+.-... |+...+ ....|+++++++||
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 47999999999999999999999 9999888775321 1111111 221100 12568999999999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch------h-hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------L-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~------i-~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|++++|.+.+.++++++.++++++++++ .+-|+. + ..+++ .+|.+.-++..-||....+
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV--------- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV--------- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH---------
Confidence 99999999999999999999999988755 666763 2 23433 4454445677778775555
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHH--HHHHHHHHHHcCCC
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI--VESLFRRFTENGMN 330 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~--iea~~~~~v~~Gl~ 330 (417)
.+|.|+.+++... +.+..+.+..+|. .+ +|..-+..|..|-+ ++|.+--+ |-+++--+...|-.
T Consensus 142 ---a~g~pta~~vas~-d~~~a~~v~~~f~---~~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 142 ---AQGLPTAVVVASN-DQEAAEKVQALFS---SP-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred ---hcCCCcEEEEecC-CHHHHHHHHHHhC---CC-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChh
Confidence 2578887776654 3334344444443 33 23333444777776 77777762 44444444555554
Q ss_pred HHHHHH-HHHHHHHHHHHHH-------HHHhcHHHHHhcccCc--hhhhhhhhhh
Q 014863 331 EDLAYK-NTVECITGIISKI-------ISTQGMLAVYNSFSGE--DKKEFEKAYS 375 (417)
Q Consensus 331 ~e~A~~-~~~~~l~~~~~~l-------i~e~G~~~l~~~vs~~--~~~~~~~~~~ 375 (417)
-.-|+. ....||......| +.-.|++.|.--|+|+ ....||..+.
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg 262 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLG 262 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHh
Confidence 444332 2344444222221 1223344454555553 2245675443
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=99.74 Aligned_cols=129 Identities=15% Similarity=0.001 Sum_probs=95.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||+|||. |.||..++.-++++ |+.|. +++||+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999999 98763 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
..++++++. .+|+|+++++-...+. ..+||..||.. |+. .++...+ .+++++ ..+.+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HPMf-Gp~------~a~~~lf--~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHPLF-GPM------SYNDGVH--RTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCCCC-CCC------cCccccc--ceEEEE-CCCCC
Confidence 999998865 2688999998543221 34899999943 422 1110111 255443 55667
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhcc
Q 014863 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIF 303 (417)
Q Consensus 271 gea~e~a~al~~aiG~~~~iett~~~E~~~dlf 303 (417)
.++.+.+++++. | .++++++.++|++.-.+
T Consensus 101 ~~~~~~~~~l~~--G-~~~~~~t~eeHD~~~A~ 130 (197)
T PRK06444 101 DNYLNEINEMFR--G-YHFVEMTADEHDLLMSE 130 (197)
T ss_pred HHHHHHHHHHHc--C-CEEEEeCHHHHHHHHHH
Confidence 788889999998 6 47899999999776433
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=108.94 Aligned_cols=151 Identities=22% Similarity=0.231 Sum_probs=104.9
Q ss_pred hhccCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~~-~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..|+|+|..... ...|.| ||+||||+|.+|..+|+.++.. |++|+++++..++ +.+...+... ..+
T Consensus 124 ~~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~ 190 (324)
T COG0111 124 SQRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDS 190 (324)
T ss_pred HHHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----ccc
Confidence 348899987222 358899 9999999999999999999988 9998776663333 2344455553 568
Q ss_pred HHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchh
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
.++++++||+|++++|...- ..++. +.+..||+|++++-++ |-. +..+++ +-.-...+||.--.|..+.+
T Consensus 191 Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~EPl~~~~ 269 (324)
T COG0111 191 LDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEEEPLPADS 269 (324)
T ss_pred HHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCCCCCCCCC
Confidence 99999999999999996555 45775 6788899999888553 321 333443 22223467787788766552
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
- +|.. -+.+++||--
T Consensus 270 p---L~~~--------pnV~~TPHia 284 (324)
T COG0111 270 P---LWDL--------PNVILTPHIG 284 (324)
T ss_pred h---hhcC--------CCeEECCccc
Confidence 2 3332 3456688763
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=106.19 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=72.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
...|.| ++|||||+|+||.++|+.|+.. |++|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 468999 9999999999999999999988 9998877665322111 1111 3478999999999999
Q ss_pred eecchhHH-HHH-HHHHhcCCCCcEEEEe-ccc
Q 014863 185 LISDAAQA-DNY-EKIFSCMKPNSILGLS-HGF 214 (417)
Q Consensus 185 avpd~a~~-~Vl-~eI~p~Lk~GaiL~~a-~G~ 214 (417)
++|..... .++ +++++.|++|++|+.+ -|-
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 99977653 444 4789999999988744 453
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.8e-08 Score=97.19 Aligned_cols=230 Identities=16% Similarity=0.215 Sum_probs=132.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------ceEEEEecCC---chhHHHHHH---------cCceecC--CCcC
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~d--~~~~ 170 (417)
||+|||.|+.|.++|.-|.++ | ++|.++.|.. .+....... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 8888887632 111111111 1221100 0135
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchhh---------hhhccccCCCCCCc-EEEeccCC
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIG-VIAVCPKG 239 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~---------~~~~~~i~~~~di~-VI~v~Pn~ 239 (417)
++++++++||+|++++|++.+.++++++.++++++++ |+.+.|+... .+++ .++ .+ .+..-|+.
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~--~~~~~lsGP~~ 149 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELG--IPCGVLSGANL 149 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhC--CCeEEeeCcch
Confidence 7889999999999999999999999999999998875 5678887533 1222 122 23 34666766
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecC-CCC--HHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVD--GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI 316 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~q-d~s--gea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~ 316 (417)
+..+. +|.++.+++.. +.+ .+..+.+.++ +-.. .|.-..-.|..|-+ |||.+--+
T Consensus 150 A~Eva------------~~~pt~~~ia~~~~~~~~~~a~~~~~l---f~~~-----~frv~~s~Dv~GvE--l~galKNv 207 (342)
T TIGR03376 150 ANEVA------------KEKFSETTVGYRDPADFDVDARVLKAL---FHRP-----YFRVNVVDDVAGVE--IAGALKNV 207 (342)
T ss_pred HHHHH------------cCCCceEEEEeCCCcchHHHHHHHHHH---hCCC-----CEEEEEcCCcccch--hhHHHHHH
Confidence 55543 34555444433 222 3444444444 4444 23333445888877 88888774
Q ss_pred HHH--HHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhc
Q 014863 317 VES--LFRRFTENGMNEDLA-YKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 317 iea--~~~~~v~~Gl~~e~A-~~~~~~~l~~~~~~li~----------e~G~~~l~~~vs~~~~~~~~~~~~~ 376 (417)
+-. +.-.+...|..-.-| +...+.||. -+++.+. -.|++.|.--|++-....||..+..
T Consensus 208 ~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~-~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~ 279 (342)
T TIGR03376 208 VAIAAGFVDGLGWGDNAKAAVMRRGLLEMI-KFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAK 279 (342)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHh
Confidence 332 222222333222222 222344444 3333332 2344666666665233567776543
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=105.90 Aligned_cols=136 Identities=25% Similarity=0.276 Sum_probs=98.0
Q ss_pred cchhhhccCccccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 89 RDEYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 89 ~~e~~~~~g~~~f~-----~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
..+.-+|.|+|... .....++| ||+||||+|.||.++|+.++.. |++|++++++.. .+...+.++.
T Consensus 120 ~~~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~ 190 (324)
T COG1052 120 EGDRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR 190 (324)
T ss_pred HHHHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce
Confidence 44566888888765 33468999 9999999999999999999866 999887776633 2333334455
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEE
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~ 234 (417)
..+.+|++++||+|+|++|..... .++. +.+..||+|.+|+-++ |-. +.-+++ +..-....||.-
T Consensus 191 -----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglDV~e 264 (324)
T COG1052 191 -----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLDVFE 264 (324)
T ss_pred -----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEeeecC
Confidence 346999999999999999987775 5664 6888999999988443 421 223333 222244677777
Q ss_pred eccCC
Q 014863 235 VCPKG 239 (417)
Q Consensus 235 v~Pn~ 239 (417)
-.|.-
T Consensus 265 ~Ep~~ 269 (324)
T COG1052 265 NEPAL 269 (324)
T ss_pred CCCCC
Confidence 77764
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-09 Score=106.82 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=74.8
Q ss_pred hccCcccccc--cccccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 94 VRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 ~~~g~~~f~~--~~~~l~g~kkIgIIG~G~mG~AiA~~L-r~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
+|+|+|.+.. ....|.| +||||||+|+||.++|+.| +.. |++|++.++...+. ...++.. ..
T Consensus 128 ~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~ 192 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KD 192 (332)
T ss_pred HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cC
Confidence 4555553221 2367999 9999999999999999999 445 88877655442221 1122331 35
Q ss_pred CHHhhhccCCeEEEeecchhHHHHH--HHHHhcCCCCcEEEEec
Q 014863 171 DIYETISGSDLVLLLISDAAQADNY--EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl--~eI~p~Lk~GaiL~~a~ 212 (417)
+.++++++||+|++++|.......+ .+..+.|++|++|+.++
T Consensus 193 ~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred CHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECC
Confidence 8899999999999999988776544 46889999999888554
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-08 Score=95.48 Aligned_cols=225 Identities=14% Similarity=0.234 Sum_probs=155.1
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHHHHcCceecC
Q 014863 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (417)
Q Consensus 111 ~kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~d 166 (417)
|+||+|.|.||| |..||-..... |++|++...+ +...|++-++.|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 478899999987 55677777666 9999887643 235599999999986
Q ss_pred CCcCCHHhhhccCCeEEEeecch-hHHHHHHHHHhcCCCCcEEEEecc---chhhh-hhccccCC-CCCCcEEEeccC-C
Q 014863 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLSHG---FLLGH-LQSMGLDF-PKNIGVIAVCPK-G 239 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~-a~~~Vl~eI~p~Lk~GaiL~~a~G---~~i~~-~~~~~i~~-~~di~VI~v~Pn-~ 239 (417)
+.|..++++.+++.+|-||-. ....+.++|.+++..|++|+-.+- +.+.+ ++. .+.. ++|+-|...||- .
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVGvssmHPAgv 149 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVGVSSMHPAGV 149 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh-hhcCchhhcCccccCCCCC
Confidence 677789999999999999988 556899999999999999974443 33332 332 3333 478888999994 3
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--HH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IV 317 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a--~i 317 (417)
||+..-+.|.-+ |++-.. -.-++.++.+++..++++.|-. ++.. .-|+....+- +|++.. .+
T Consensus 150 PGtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~-~yv~------padv~s~VaD-mg~lvtav~l 213 (340)
T COG4007 150 PGTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKE-VYVL------PADVVSAVAD-MGVLVTAVAL 213 (340)
T ss_pred CCCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCc-eEec------CHHHHHHhhh-hHHHHHHHHH
Confidence 666644444443 122111 1235789999999999999964 2222 1133322222 333332 34
Q ss_pred HHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 318 ESLFRRF----TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 318 ea~~~~~----v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
.+..|.+ .-.|-|.|+--+.+..++. .++-|+-.+|++.|.....
T Consensus 214 ~gvldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 214 SGVLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 4433332 3578999998888887776 9999999999988877554
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-09 Score=105.59 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=79.5
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..+|+|+|..... ..|.| ++|||||+|+||.++|+.++.. |++|+++++...+ .|+.. ...+
T Consensus 105 ~~~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~ 166 (303)
T PRK06436 105 YNMKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYME 166 (303)
T ss_pred HHHHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCC
Confidence 4467788876544 68999 9999999999999999988877 9998777664221 23321 0357
Q ss_pred HHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
+++++++||+|++++|..... .++. +.+..||+|++++.++
T Consensus 167 l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 167 PEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred HHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 899999999999999977765 4664 6888899999988553
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6e-09 Score=105.15 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=102.5
Q ss_pred hhhhccCcccccc----cccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHHHHcCceec
Q 014863 91 EYIVRGGRDLFNL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 91 e~~~~~g~~~f~~----~~~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (417)
...+|+|+|.... ....|.| ++|||||+|+||..+|+.++ .. |++|++.++... .+.....|..
T Consensus 122 ~~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~-- 190 (323)
T PRK15409 122 AERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR-- 190 (323)
T ss_pred HHHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE--
Confidence 4456788886421 2357999 99999999999999999997 55 888876555422 2222345555
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a-~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++++-+ -|-. +..+++ +..-....||..-.
T Consensus 191 ---~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 266 (323)
T PRK15409 191 ---YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGLDVFEQE 266 (323)
T ss_pred ---ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 458999999999999999966664 5664 688999999998844 3421 223333 11222356666666
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~ 274 (417)
|-.+.+. ++.. -+.+++||-- .+.++.
T Consensus 267 P~~~~~p---L~~~--------~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 267 PLSVDSP---LLSL--------PNVVAVPHIGSATHETR 294 (323)
T ss_pred CCCCCch---hhcC--------CCEEEcCcCCCCcHHHH
Confidence 6422221 2221 4667888863 333443
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=112.37 Aligned_cols=136 Identities=13% Similarity=-0.045 Sum_probs=99.2
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCC-CcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~d-i~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
||||+|+....++++++.|+++++++|+|+++++...++.....++.+ .+||..|| +.|.+. ..|+..+....+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~-~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRES-SGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcc-hhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999843322211134432 57999999 333331 233333333346799
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
+++||.++.+.++++.+++++..+| .+++.++.++|++.-.+ +++..|-+.-++.+.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD~~~A~-----iShlpH~~a~~l~~~~~ 137 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHDRVFAA-----VSHLPHVLSFALVEQIL 137 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHHHHHHH-----HhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 46888999999777533 45555555555555543
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-09 Score=105.04 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=78.1
Q ss_pred hhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 014863 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (417)
..++|+|..... ..+.| ++|||||+|+||..+|+.|+.. |++|+++++...+ . .++.. .....+.
T Consensus 120 ~~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l 184 (312)
T PRK15469 120 LQNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREEL 184 (312)
T ss_pred HHHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccH
Confidence 356678864333 56899 9999999999999999999988 9998776654321 1 12221 0013478
Q ss_pred HhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
++++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 185 ~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 185 SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 99999999999999977664 5665 5889999999988554
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=111.11 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=82.9
Q ss_pred hhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 92 YIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
..+|+|+|.... ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. ..
T Consensus 119 ~~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~ 185 (525)
T TIGR01327 119 ASLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VD 185 (525)
T ss_pred HHHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cC
Confidence 346778886432 1257999 9999999999999999999988 99987766542 234455667653 35
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
+.+|++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 186 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 186 DLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred CHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 7999999999999999977654 5664 6788999999988653
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=99.49 Aligned_cols=96 Identities=27% Similarity=0.299 Sum_probs=73.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC-------------CcCCHHhhhc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-------------TLGDIYETIS 177 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~-------------~~~~~~Eav~ 177 (417)
|+||+|||.|.||.++|..|.++ |++|.+.+|. +..+...+.|....+. ...+. ++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47999999999999999999999 9998887764 2234445556542110 01233 5678
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
.+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 99999999999998999999999999988765 556775
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-09 Score=110.99 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=82.8
Q ss_pred hhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
.+|+|+|.... ....|.| |+|||||+|+||..+|+.|+.. |++|+++++... .+.+...|+.. .+
T Consensus 122 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~-----~~ 187 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL-----VS 187 (526)
T ss_pred HHHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE-----Ec
Confidence 45678886432 2357999 9999999999999999999988 999877665422 34455667763 38
Q ss_pred HHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+|++++||+|++++|.... ..++ .+.+..||+|++|+.++
T Consensus 188 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 188 LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 99999999999999997765 4577 47899999999988553
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-08 Score=93.66 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=74.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC---------CcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~---------~~~~~~Eav~~ADiV 182 (417)
|||+|||.|+||..+|..|.++ |++|.+..| .+ ..+...+.|+...+. ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999999 999888777 33 344455566542110 123456667899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
|+++|..+..++++++.+++.++++|+ ...|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 999999999999999999998887654 567875
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.7e-08 Score=88.89 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=99.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-----------HcCceec---------CCCcCCH
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLGDI 172 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~---------d~~~~~~ 172 (417)
||+|||.|.||.++|..+... |++|.+.+.+.. ..+.+. +.|-... -....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999999 999988776533 221111 1121000 0014677
Q ss_pred HhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHh
Q 014863 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (417)
++++ +||+||=++|..... +++.++.+.+.++++|. -++++.+..+.. ..+..-+++.+|+-.|.+.++
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 7877 999999999976653 69999999999999875 778888887765 333334799999988876521
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 250 ~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.-= +.++...+.+.++.+..++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 4468888999999999999999853
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=104.09 Aligned_cols=165 Identities=21% Similarity=0.203 Sum_probs=102.0
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH--H----cCceec
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----AGFTEE 165 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~--~----~G~~~~ 165 (417)
..+++|+|..+.+ ..|.| ++|||||+|.||..+|+.|+.. |++|+++++...+...... . ..+...
T Consensus 142 ~~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~ 213 (347)
T PLN02928 142 ISLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE 213 (347)
T ss_pred HHHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccccccccc
Confidence 3456778865433 67999 9999999999999999999987 9998776654221111100 0 000000
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~ 236 (417)
.....+.+|++++||+|++++|..... .++. +.+..||+|++|+.++ |-. +.-++. +......+||.-..
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~E 292 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWSE 292 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCCC
Confidence 011458999999999999999966554 5664 6889999999988553 421 222332 11223356777767
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~ 276 (417)
|-.+.+- ++.. -+.+++||-- .+.+..+.
T Consensus 293 P~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 293 PFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 7433221 2222 4667888863 34444433
|
|
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.3e-09 Score=88.36 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=59.3
Q ss_pred hhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 300 ~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
++.|+..++++||+|+ +++++.+.+++.|+++++|.+++.|++. |.++|+.+++. ..|++.|++|.-
T Consensus 3 E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~-G~a~ll~~~~~~~~~l~~~v~tPgG 75 (107)
T PF14748_consen 3 EDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFI-GAAKLLEESGRSPAELRDEVTTPGG 75 (107)
T ss_dssp GGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHCSS-HHHHHHHHS-TTS
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHccCCCHHHHhhhccCCCC
Confidence 4678888999999999 7999999999999999999999999999 99999999886 999999999954
|
... |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=102.30 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=103.2
Q ss_pred hhhccCccccccc-------ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee
Q 014863 92 YIVRGGRDLFNLL-------PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 92 ~~~~~g~~~f~~~-------~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (417)
..+|+|+|..... ...|.| |+|||||+|++|..+|+.++.. |++|+++++.... ...++.
T Consensus 120 ~~~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~- 186 (311)
T PRK08410 120 RYVKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE- 186 (311)
T ss_pred HHHHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce-
Confidence 3467788864321 257999 9999999999999999999877 9998776654211 123454
Q ss_pred cCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEE-eccch------hhhhhccccCCCCCCcEEEe
Q 014863 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~-a~G~~------i~~~~~~~i~~~~di~VI~v 235 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+- +-|-. +..+++..+. ..+||.--
T Consensus 187 ----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~ 260 (311)
T PRK08410 187 ----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEK 260 (311)
T ss_pred ----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCC
Confidence 358999999999999999966554 5665 68889999999884 44521 3334432222 45677777
Q ss_pred ccCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014863 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 236 ~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a 277 (417)
.|-.+.+- ++.-- .=-|.+++||-- .+.++.+..
T Consensus 261 EP~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 261 EPMEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 77433322 12100 002677888863 344544443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.5e-08 Score=96.06 Aligned_cols=160 Identities=18% Similarity=0.139 Sum_probs=100.1
Q ss_pred hhccCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec
Q 014863 93 IVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~~~~g~~~f~~-------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (417)
.+++|+|.... ....+.| ++|||||+|.+|..+|+.++.. |++|+++.+.... .....
T Consensus 123 ~~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-- 187 (314)
T PRK06932 123 DQLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-- 187 (314)
T ss_pred HHHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc--
Confidence 35667775321 1257999 9999999999999999999877 9998765443211 11111
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEE-Eeccch------hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~-~a~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+ .+-|-. +..+++ +..-....||.-..
T Consensus 188 ---~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaLDV~~~E 263 (314)
T PRK06932 188 ---YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAALDVLVKE 263 (314)
T ss_pred ---cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEEecCCCC
Confidence 347999999999999999966554 5664 6888999999988 444532 223333 22223456777777
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a~ 278 (417)
|-.+..-..+.+.+- -+.+++||-- .+.++.+...
T Consensus 264 P~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 264 PPEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred CCCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHHH
Confidence 743322211111111 3667888863 3445554443
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-08 Score=99.28 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=96.0
Q ss_pred hcccchhhhccCccccccc---ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc
Q 014863 86 LADRDEYIVRGGRDLFNLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 86 ~~~~~e~~~~~g~~~f~~~---~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (417)
|-+-.| .+++|+|....+ -..++| |+|||+|+|.||..+|++|... |..+.+..|. ....+.+.+.+.
T Consensus 136 ~~~g~~-~~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNE-MVRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYYA 206 (336)
T ss_pred hhhhhh-hhhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhcc
Confidence 334344 366677732221 378999 9999999999999999999987 8545444444 344555555555
Q ss_pred eecCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEE-eccch------hhhhhccccCCCCCCcEE
Q 014863 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVI 233 (417)
Q Consensus 163 ~~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~-a~G~~------i~~~~~~~i~~~~di~VI 233 (417)
. ..+.+|.+.++|+|++++|..... .+++ ++..+||+|.+|+- +=|-- ...+.+ +.....+.||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCccccccccc
Confidence 4 358899999999999999988775 6776 69999999998873 33421 112222 23334577777
Q ss_pred EeccCCc
Q 014863 234 AVCPKGM 240 (417)
Q Consensus 234 ~v~Pn~p 240 (417)
--.|+.+
T Consensus 281 ~~EP~~~ 287 (336)
T KOG0069|consen 281 EPEPPVD 287 (336)
T ss_pred CCCCCCC
Confidence 7777443
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=102.01 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=78.1
Q ss_pred hhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
.+|+|+|.... ....|.| ++|||||+|++|..+|+.++.. |++|+++++... ....++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee----cCC
Confidence 45678886432 2367999 9999999999999999999887 999876654321 11123332 458
Q ss_pred HHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+-++
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 99999999999999996655 45664 6889999999988443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-08 Score=98.40 Aligned_cols=128 Identities=23% Similarity=0.192 Sum_probs=88.3
Q ss_pred hhhccCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee
Q 014863 92 YIVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 92 ~~~~~g~~~f~~-------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (417)
..+|+|+|.... ....|.| ++|||||+|++|..+|+.++.. |++|+++++.... ....
T Consensus 123 ~~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~- 187 (317)
T PRK06487 123 QAVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD- 187 (317)
T ss_pred HHHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc-
Confidence 346778886432 1247999 9999999999999999999877 9998766554211 1122
Q ss_pred cCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhccccCCCCCCcEEEe
Q 014863 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a-~G~~------i~~~~~~~i~~~~di~VI~v 235 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+-+ -|-. +..+++ +......+||.-.
T Consensus 188 ----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~ 262 (317)
T PRK06487 188 ----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSV 262 (317)
T ss_pred ----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCC
Confidence 347899999999999999966554 5665 688999999998844 3421 223333 2222345677777
Q ss_pred ccCC
Q 014863 236 CPKG 239 (417)
Q Consensus 236 ~Pn~ 239 (417)
.|-.
T Consensus 263 EP~~ 266 (317)
T PRK06487 263 EPPV 266 (317)
T ss_pred CCCC
Confidence 7743
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=96.43 Aligned_cols=214 Identities=10% Similarity=0.075 Sum_probs=137.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~ 168 (417)
..|+||+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|-.... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999999 999988776532 2222 2222321000 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..++ +.+++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+|+..|+--|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976664 69999999999999875 677888777765 223334799999988887742
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.-= |.++...+.+.++.+..++..+|...++ . . | ..+-+..-+...+-.-+-.++
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~-v---~----d---~pGfv~nRi~~~~~~ea~~lv 514 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIV-V---N----D---CPGFFVNRVLFPYFAGFSQLL 514 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEE-e---c----C---cCchhHHHHHHHHHHHHHHHH
Confidence 111 3457788999999999999999964221 1 1 1 112222222221112233567
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 014863 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~~~l---~~~~~~li~e~G~~~l~ 359 (417)
+.|.++++-=....+.+ + |--.++-..|++.++
T Consensus 515 ~~Ga~~e~ID~a~~~~~G~~~-GP~~~~D~~Gld~~~ 550 (715)
T PRK11730 515 RDGADFRQIDKVMEKQFGWPM-GPAYLLDVVGIDTAH 550 (715)
T ss_pred HcCCCHHHHHHHHHhhCCCcc-CHHHHHHhhchHHHH
Confidence 88888876554332321 2 445566666764433
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-07 Score=98.95 Aligned_cols=212 Identities=11% Similarity=0.105 Sum_probs=134.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceec-------C--CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N--GT 168 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d--~~ 168 (417)
..+++|+|||.|.||..||..+... |++|++.+...+ ..++ ..+.|-... + ..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3458999999999999999999999 999988765532 2222 222221100 0 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..++ +++++||+||=++|.+... +++.++.+.++++++|. -++++.+..+.. .....-+|+..|+-.|.+.++
T Consensus 406 ~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc
Confidence 2345 4679999999999976664 69999999999999875 667888877765 222234799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.-= |..+...+.+.++.+.+++..+|...++ . . | ..+-+..-+..-+-.-.-.++
T Consensus 482 -------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~-v---~----d---~pGFi~NRi~~~~~~ea~~lv 536 (737)
T TIGR02441 482 -------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIV-V---K----D---GPGFYTTRCLGPMLAEVIRLL 536 (737)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEE-E---C----C---cCCchHHHHHHHHHHHHHHHH
Confidence 111 3457788899999999999999964221 1 1 1 111122222221112223467
Q ss_pred HcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHH
Q 014863 326 ENGMNEDLAYKNTVECIT--GIISKIISTQGMLA 357 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~ 357 (417)
+.|+++++-=.. ...+- -|--.++-..|++.
T Consensus 537 ~eGv~~~~ID~a-~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 537 QEGVDPKKLDKL-TTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred HcCCCHHHHHHH-HHHcCCCCCHHHHHHHhhHHH
Confidence 889988765543 22110 14445666666633
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-08 Score=88.16 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=67.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+.+++++++|+|++++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 567 9999999999999999999987 6 5677777764444444544443100001456777889999999999
Q ss_pred cchhH-HHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~-~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|+..+ .+-.......++++.+|+++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 99886 11110112336789888877543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=93.16 Aligned_cols=175 Identities=19% Similarity=0.152 Sum_probs=122.2
Q ss_pred ccchhhhccCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC
Q 014863 88 DRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 88 ~~~e~~~~~g~~~f~~~-~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
++-..-++.|+|..... ..++.| |++||||+|-+|.-+|..++.. |++++.++.- ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 44445678899988774 799999 9999999999999999999888 8887665554 346788889988
Q ss_pred CCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec--cch-----hhhhhccccCCCCCCcEEEecc
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH--GFL-----LGHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~--G~~-----i~~~~~~~i~~~~di~VI~v~P 237 (417)
+.+.+|+++.||+|-|++|-.... .++. +-+..||+|..|+-++ |+- +.-++. +..-..-+||....|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCC
Confidence 579999999999999999966664 5664 6778899999877442 331 223333 333345678888888
Q ss_pred CCchhhHHHHHhhcccccCCCceEEEeecCCCCH-H-----HHHHHHHHHHHhCC
Q 014863 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG-R-----ATNVALGWSVALGS 286 (417)
Q Consensus 238 n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sg-e-----a~e~a~al~~aiG~ 286 (417)
..-+.. ++|-.- -+.+.+||+..+- | +.|.++++...+..
T Consensus 268 p~~~~~-~~Lv~h--------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 268 PKNGWD-SELVSH--------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred Cccchh-HHHhcC--------CceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 664422 222211 3557889987664 3 23444444444443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-07 Score=92.40 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=110.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC------------CCcCCHHhhhccC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------GTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d------------~~~~~~~Eav~~A 179 (417)
+||+|||+|.||..+|.+|.+ |++|+++++. ....+... .|..+.. -.+.+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999754 6777665554 43344433 4432100 0133445678999
Q ss_pred CeEEEeecchh-------HHHH---HHHHHhcCCCCcEEEEeccc----hhh----hhhc-cccCCCCCCcEEEecc--C
Q 014863 180 DLVLLLISDAA-------QADN---YEKIFSCMKPNSILGLSHGF----LLG----HLQS-MGLDFPKNIGVIAVCP--K 238 (417)
Q Consensus 180 DiViLavpd~a-------~~~V---l~eI~p~Lk~GaiL~~a~G~----~i~----~~~~-~~i~~~~di~VI~v~P--n 238 (417)
|+||+|+|... ...+ .+.|.+++++|++|++.+-+ .-. .+++ .++....+ .++...| -
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~-~~~~~~PE~v 156 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD-FYVGYSPERI 156 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC-eeEeeCCCcC
Confidence 99999999541 1233 35799999999998765433 211 1221 12222111 2333333 3
Q ss_pred CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhcccccccccchHHHHH
Q 014863 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (417)
Q Consensus 239 ~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~-~~iett~~~E~~~dlfgeqtvL~G~~~a~i 317 (417)
.+|....++. -.+- +.... +.+..+.+..+...+... .+..++. .+-+.-.+-+.+ +.+.--+++
T Consensus 157 ~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~AE~~Kl~~N~-~~av~Ia~~ 222 (425)
T PRK15182 157 NPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESI-KVAEAAKVIENT-QRDLNIALV 222 (425)
T ss_pred CCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 3444421111 1233 22333 456777888888887522 1222211 111222222221 223333366
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 014863 318 ESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~~ 337 (417)
.-++..+.+.|++.++.+..
T Consensus 223 NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 223 NELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHhCcCHHHHHHH
Confidence 66778888889998877764
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-07 Score=98.60 Aligned_cols=213 Identities=10% Similarity=0.068 Sum_probs=135.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceec-------C--CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N--GT 168 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d--~~ 168 (417)
..+++|+|||.|.||..||..+..+ |++|++.+...+ ..+. ..+.|-... + ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 999988776532 2222 122221100 0 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..+. +.+++||+||=++|.+... +++.++-+.++++++|. -++++.+..+.. .....-+|+..|+=-|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 5679999999999966664 69999999999999875 667788777765 222233799999988888731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.-= |.++...+.+.++.+.+++..+|...++- . | ..+-+..-+..-+-.-.-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~----d---~pGfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIVV----N----D---CPGFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEEe----C----C---cccchHHHHHHHHHHHHHHHH
Confidence 111 34577888999999999999999642211 1 1 112222222221222334467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHH
Q 014863 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAV 358 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~~~l---~~~~~~li~e~G~~~l 358 (417)
+.|.++++-=+...+.+ + |--.++-..|++.+
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~-GPf~l~D~~Gld~~ 549 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPM-GPAYLLDVVGIDTG 549 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCcc-CHHHHHHhhhHHHH
Confidence 88888876544322211 2 44556666676443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=92.41 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.||.++|+.|+.. |.+|++.+|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 36788 9999999999999999999998 9999888886433 444555666531 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|..... ++..+.|+++.+|++.+
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeC
Confidence 9975321 34667789999988775
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-06 Score=85.46 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCC-------cCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------~~~~~Eav~~ADiV 182 (417)
+||+|||.|.||..+|..|.++ |++|.+..|... +...+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 999988887532 33344564421 010 11222356789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccchh-hhhhccccCCCCCCcEE------EeccCCchhhHHHHHhhcccc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i-~~~~~~~i~~~~di~VI------~v~Pn~pg~~vr~ly~~G~e~ 254 (417)
|++||..+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. +++ .....+|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999998889999999999887765 46668753 23333 33433 333 23444555441 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCCc
Q 014863 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPF 288 (417)
Q Consensus 255 ~G~Gv~~liav~qd~s-----gea~e~a~al~~aiG~~~ 288 (417)
.|.|... +......+ .+..+...+++...|...
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~ 181 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDS 181 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCc
Confidence 1344433 33222222 355566677888888653
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=93.29 Aligned_cols=212 Identities=13% Similarity=0.132 Sum_probs=133.5
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (417)
.++||+|||.|.||..+|.-+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 58 999988765532 22222 122211000 01
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..+. +++++||+||=++|..... +++.++-++++++++|. -++++.+..+.. .....-+++..|+-.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 5789999999999977663 69999999999999875 667888877765 222233799999988877731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--HHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRR 323 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a--~iea~~~~ 323 (417)
.-= |.++...+.+..+.+.+++..+|...++ . . | ..+-+..-+.. +.|+ -.
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv~-v---~----d---~pGfi~nRl~~~~~~Ea--~~ 504 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPIV-V---A----D---KAGFYVNRILAPYMNEA--AR 504 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEE-E---c----c---ccchHHHHHHHHHHHHH--HH
Confidence 111 3457788899999999999999964221 1 1 1 11112222222 2222 23
Q ss_pred HHHcCCCHHHHHHHHHH--HHHHHHHHHHHHhcHHHHHh
Q 014863 324 FTENGMNEDLAYKNTVE--CITGIISKIISTQGMLAVYN 360 (417)
Q Consensus 324 ~v~~Gl~~e~A~~~~~~--~l~~~~~~li~e~G~~~l~~ 360 (417)
+++.|.++++.=..... --. |.-.++-..|++.+++
T Consensus 505 l~~~G~~~~dID~a~~~~G~p~-GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 505 LLLEGEPVEHIDKALVKFGFPV-GPITLLDEVGIDVGAK 542 (699)
T ss_pred HHHCCCCHHHHHHHHHHcCCCc-CHHHHHHHhchHHHHH
Confidence 46788877665443211 012 4556666667654443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=91.63 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhcc---CCeEEEeecchhHH-H
Q 014863 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQA-D 193 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~---ADiViLavpd~a~~-~ 193 (417)
||.+||+||.+. |++|.+++|+.++..+..... |+.. ..+++|+++. +|+|++++|+..+. +
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988866554444432 4554 6789998875 89999999987664 7
Q ss_pred HHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 194 Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
|++++.|+|.+|.+|++.+-... ..... ..-.+++.+|-.-=.+-.... + .|. + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvdapVSGG~~gA----~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIGMGVSGGEEGA----L-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEecCCCCCHHHH----h-------cCC-E-EEEeC--C
Confidence 88999999999999998864321 11111 111346666543323321111 1 344 4 44565 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 014863 271 GRATNVALGWSVALGSP 287 (417)
Q Consensus 271 gea~e~a~al~~aiG~~ 287 (417)
.++.+.++-++..+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999963
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-06 Score=85.41 Aligned_cols=151 Identities=16% Similarity=0.218 Sum_probs=109.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------hhHHHHHHcCceecC---------CCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~d---------~~~~~ 171 (417)
++||+|||.|.||+.+|..+... |++|++.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999999887 899988776622 223333334422110 00122
Q ss_pred HHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+. ++++||+||=+++-..- .+++.++-++.+|+++|. -.+++++..+.+. ..-|+ +|+..|+--|.+.+
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rpe--r~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRPE--RFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCch--hEEEEeccCCCCcc----
Confidence 22 78999999999995544 369999999999999884 7788888766552 22232 69999998888773
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCC
Q 014863 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 249 ~~G~e~~G~Gv~~l-iav~qd~sgea~e~a~al~~aiG~ 286 (417)
+.+ +......+.+..+.+.+++..+|.
T Consensus 149 -----------~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 149 -----------PLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred -----------eeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 321 234667788999999999999994
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=94.66 Aligned_cols=153 Identities=12% Similarity=0.162 Sum_probs=110.8
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (417)
.++||+|||.|.||..+|..+. .. |++|++.+... ...+.+ .+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINP-QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4689999999999999999987 77 99988876543 222222 222211000 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..+. +++++||+||=++|..... +++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 5689999999999976663 69999999999999875 667888877765 222233899999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.-= |.++...+.+..+.+..++..+|..
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~ 484 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKT 484 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCc
Confidence 111 4468889999999999999999975
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=97.93 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=95.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... ...... ..+.++++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 36889 9999999999999999999988 9998766542111 111111 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~a-----~~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|-.. ...++. +.+..||+|++|+-++ |-. +..+++ +-....-.||.--.|....+ ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~~~~~----Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPELNVE----LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCCCchh----hhhc--
Confidence 99554 345664 6888999999988554 421 223333 11222345677777743222 2221
Q ss_pred cccCCCceEEEeecCC-CCHHHHH-----HHHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~qd-~sgea~e-----~a~al~~aiG~~ 287 (417)
.. +++||-- .+.+... .+..+..-+|..
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~~ 281 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGHE 281 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcCc
Confidence 23 6788753 4444443 335555556643
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=97.02 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=96.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... .+.+.. ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~~~~~~-----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----AEGDGD-----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccCcc-----ccCHHHHHhhCCEEEEe
Confidence 46789 9999999999999999999988 9998776543211 111122 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~a-----~~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|... ...++. +.+..||+|++|+-++ |-. +..+++ +......+||.--.|.. ... +.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~~-~~~---L~---- 245 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQI-DLE---LA---- 245 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCCC-Chh---hh----
Confidence 99754 345664 6888999999988553 421 222322 11222345666667742 211 11
Q ss_pred cccCCCceEEEeecCC-CCHHHHH-----HHHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~qd-~sgea~e-----~a~al~~aiG~~ 287 (417)
..+.+++||-- .+.+..+ .+..+..-+|..
T Consensus 246 -----~~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 246 -----DLCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred -----hCCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 14677888863 4444333 233444445544
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-07 Score=93.47 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=88.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHH-HHHcCc-------eecC-CCcCCHHhh
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~-------~~~d-~~~~~~~Ea 175 (417)
..+.| ++|||||+|.+|..+|+.++ .. |++|+++++........ ....|. ...+ ....+.+|+
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~el 233 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEV 233 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHH
Confidence 57999 99999999999999999986 44 99987666543211111 011221 0000 012479999
Q ss_pred hccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 176 ISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 176 v~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
+++||+|++++|-... ..++. +.+..||+|++|+-++ |-. +..+++ +......+||.--.|-.+ . .
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s-g~i~gAaLDVf~~EP~~~-~---~ 308 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA-NPMFRVGLDVFEDEPYMK-P---G 308 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCeeEEEEeCCCCCCCCc-c---h
Confidence 9999999999996555 45665 6889999999988553 421 233333 112233456666666321 1 1
Q ss_pred HHhhcccccCCCceEEEeecC
Q 014863 247 LYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 247 ly~~G~e~~G~Gv~~liav~q 267 (417)
+++. -+.+++||-
T Consensus 309 L~~~--------pNVilTPHi 321 (386)
T PLN02306 309 LADM--------KNAVVVPHI 321 (386)
T ss_pred HhhC--------CCEEECCcc
Confidence 3322 366788886
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-07 Score=83.59 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=67.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|.... +-..-+|..+||. +.+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 46778 9999999999999999999999 9999887765 4445566678998 46899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|-...+. -.+.++.||+|++|..++.|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875431 125566799999998887764
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=83.27 Aligned_cols=149 Identities=20% Similarity=0.190 Sum_probs=106.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh---ccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav---~~ADiViLavpd 188 (417)
|+||.||+|.||..+.++|.+. |++|+ +++.+..+.+.+..+|.+. +.+++|.+ ...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 99875 5555677788888899764 56666654 456899999998
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEeccchhhh-hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 189 ~a~-~~Vl~eI~p~Lk~GaiL~~a~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
..+ .++++++.|+|.+|.+|++-.--+.+. +......-+++++++-+--.+--.-.+ .|.. +-+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~-----------~G~~--lMiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE-----------RGYC--LMIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhh-----------cCce--EEec
Confidence 844 579999999999999999876543221 111112345788887665544211111 2232 3345
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 014863 267 QDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~ 286 (417)
. +.++.+...-+|.++--
T Consensus 137 G--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 137 G--DEEAVERLEPIFKALAP 154 (300)
T ss_pred C--cHHHHHHHHHHHHhhCc
Confidence 5 67899999999998863
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=79.70 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=127.8
Q ss_pred HcCceecCCCcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---hhh-hhccccCCCCCCcEE
Q 014863 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (417)
Q Consensus 159 ~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~-~~~~~i~~~~di~VI 233 (417)
+.|+.+ +.|..|+++++|++|+=+|-.. +.++++++.+++++|++|+.++-++ +.+ ++. .=++|+.|.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 368886 5678899999999999999777 6899999999999999998776654 222 222 226899999
Q ss_pred EeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccch
Q 014863 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGA 312 (417)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~ 312 (417)
..||-+ .+.+ .|-.+ ++ ..-++.++.++...|.+..|..- .+. .++.+..+-.|-.
T Consensus 199 S~HPaa-VPgt------------~Gq~~-i~-egyAtEEqI~klveL~~sa~k~ay~~P--------A~lvspV~DMgS~ 255 (342)
T PRK00961 199 SYHPGA-VPEM------------KGQVY-IA-EGYADEEAVEKLYEIGKKARGNAFKMP--------ANLIGPVCDMCSA 255 (342)
T ss_pred ccCCCC-CCCC------------CCcee-cc-cccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHHH
Confidence 999933 2221 12222 22 45678999999999999999751 222 2555555444444
Q ss_pred HHHH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 313 VHGI----VESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 313 ~~a~----iea~~~~~v-~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+.+. +..-++.++ -.|-|.+.+-..+.++|. .++.|+.++|+.+|-+.+.
T Consensus 256 VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~-tmasLme~~GI~gm~~aLn 310 (342)
T PRK00961 256 VTAIVYAGILAYRDAVTQILGAPADFAQMMADEALT-QITALMREEGIDNMEEALD 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHhHHHHhcC
Confidence 5552 333444443 679999999999999998 9999999999999998886
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-06 Score=87.24 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----------------cCceecCCCcCCHHhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~d~~~~~~~Ea 175 (417)
|||+|||+|.||..+|..+ .. |++|++.++. ....+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 4899999999999999655 46 8888766654 433444332 111110 02346788
Q ss_pred hccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~-----------a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+++||+||+|+|.. ...+++++|.+ +++|++|++.+-+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv 119 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV 119 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence 89999999999954 33567788887 6999988765543
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=78.61 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=128.9
Q ss_pred HcCceecCCCcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---hhh-hhccccCCCCCCcEE
Q 014863 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (417)
Q Consensus 159 ~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~-~~~~~i~~~~di~VI 233 (417)
+.|+.. +.|..|+++++|++|+=+|-.. +.++++++.+++++|++|+.++-++ +.+ ++. +. ++|+.|.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCee
Confidence 468886 5678899999999999999777 6899999999999999998777654 222 222 22 5899999
Q ss_pred EeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccch
Q 014863 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGA 312 (417)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~ 312 (417)
..||-+ .+.+ .|-- ++ ...-++.++.++...|.+.+|..- .+. .++.+..+-.|-.
T Consensus 197 S~HPaa-VPgt------------~~q~-Yi-~egyAtEEqI~klveL~~sa~k~ay~~P--------A~LvspV~DMgS~ 253 (340)
T TIGR01723 197 SYHPGC-VPEM------------KGQV-YI-AEGYASEEAVNKLYELGKKARGKAFKMP--------ANLLGPVCDMCSA 253 (340)
T ss_pred ccCCCC-CCCC------------CCce-Ee-ecccCCHHHHHHHHHHHHHhCCCeeecc--------hhhccchhhHHHH
Confidence 999933 2221 1212 23 367889999999999999999751 222 2455555444444
Q ss_pred HHHH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 313 VHGI----VESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 313 ~~a~----iea~~~~~v-~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+.+. +..-++.++ -.|-|.+.+-..+.++|. .++.|+.++|+++|-+.+.
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~-tmasLme~~GI~gm~~aLn 308 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALT-QIHNLMEEKGIDKMEEALD 308 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 5552 333344443 679999999999999998 9999999999999998886
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.4e-07 Score=93.41 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=91.3
Q ss_pred chhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 90 DEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 90 ~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
.+.++|.+. ..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. .
T Consensus 241 ~d~~~R~~~-------~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~ 300 (476)
T PTZ00075 241 IDGIFRATD-------VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----V 300 (476)
T ss_pred HHHHHHhcC-------CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----e
Confidence 366777552 46889 9999999999999999999988 9998877654333 3345557886 4
Q ss_pred CCHHhhhccCCeEEEeecchhHHHHHH-HHHhcCCCCcEEEEeccchhhh-hhccccCCCCCCcEEEeccCCchhh
Q 014863 170 GDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
.+.+++++.+|+|++++.. ..++. +.+..||+|++|+.++-+.... +.. +....++++..+.|+.....
T Consensus 301 ~~leell~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 301 VTLEDVVETADIFVTATGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred ccHHHHHhcCCEEEECCCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 5789999999999999753 44664 6888899999988665443211 110 11112577788888665444
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=84.57 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
|+||||||+|.||..++++|.+. +.+++++...+.+. +..+.+...|... +.+.++++.++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 57999999999999999999875 01345443344433 3333444455543 568888889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecc
Q 014863 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 99888776554 344 4444444
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-05 Score=76.87 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=131.8
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCch------h-----------HHHHHHcCceecC-------C--CcC--CHH
Q 014863 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------S-----------FAEARAAGFTEEN-------G--TLG--DIY 173 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~------s-----------~~~A~~~G~~~~d-------~--~~~--~~~ 173 (417)
||..||..+..+ |++|++.+..... . ++.+.+.|..... . ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999998 9999888776421 1 1222233321100 0 011 256
Q ss_pred hhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhh
Q 014863 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~ 250 (417)
+++++||+||-++|..... .++.++.+.++++++|. -++++.+..+.. ..+..-+++.+|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 8899999999999977764 58889999999999874 555666666654 22222379999997777663
Q ss_pred cccccCCCceE-EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCC
Q 014863 251 GKEINGAGINS-SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (417)
Q Consensus 251 G~e~~G~Gv~~-liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl 329 (417)
+. =+..+...+.+..+.+..++..+|... +.. .+. +.+ ++......++.-++..+.+.|.
T Consensus 146 ---------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~-v~v---~d~-----~Gf-i~nri~~~~l~EAl~l~e~g~~ 206 (314)
T PRK08269 146 ---------PLVEVSPSDATDPAVVDRLAALLERIGKVP-VVC---GPS-----PGY-IVPRIQALAMNEAARMVEEGVA 206 (314)
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcE-EEe---cCC-----CCc-chHHHHHHHHHHHHHHHHhCCC
Confidence 22 133566788899999999999999652 211 111 111 3444444455555566677789
Q ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHhcHHHHHhc
Q 014863 330 NEDLAYKNTVECIT-----GIISKIISTQGMLAVYNS 361 (417)
Q Consensus 330 ~~e~A~~~~~~~l~-----~~~~~li~e~G~~~l~~~ 361 (417)
++++.........- .|..+++-..|++.+++.
T Consensus 207 ~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~ 243 (314)
T PRK08269 207 SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYA 243 (314)
T ss_pred CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHH
Confidence 99888775543321 156666777777554443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=83.15 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC----ceecCCCcCCHHhh---hccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~d~~~~~~~Ea---v~~ADiViL 184 (417)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-.+.+ +++ ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999999877666555544 232 4566664 567788999
Q ss_pred eecchh-HHHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
.|+-.. ...++++++|+|.+|.+|+|-+--. +....+ .-.+++.||..--.+-..-. -.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSGGEeGA-----------~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSGGEEGA-----------RHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEecccccccccc-----------ccC-
Confidence 999754 3568899999999999999876432 222222 23467788866543311110 012
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhccccccc--ccchHHH--------HHHHHHHHHHH-cC
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI--LLGAVHG--------IVESLFRRFTE-NG 328 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtv--L~G~~~a--------~iea~~~~~v~-~G 328 (417)
|+ |-|.. +.++.+.+.-++..|-.. ...++..+..|+.+. ..=++|. +|--.|+.+.. .|
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk------~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lg 209 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAK------VDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLG 209 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhh------cCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcC
Confidence 22 33444 678999999999999764 113434444443311 0011111 45557777776 88
Q ss_pred CCHHHH
Q 014863 329 MNEDLA 334 (417)
Q Consensus 329 l~~e~A 334 (417)
++.++-
T Consensus 210 ls~~ei 215 (473)
T COG0362 210 LSAEEI 215 (473)
T ss_pred CCHHHH
Confidence 988764
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=85.50 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-----------------C--ceecCCCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------------G--FTEENGTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------------G--~~~~d~~~~~ 171 (417)
||||+|||+|.+|..+|..|.+. |.|++|+.. +.+....+...+. + +.. ..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 58999999999999999999887 223667544 4433333332111 1 111 345
Q ss_pred HHhhhccCCeEEEeec-ch--------------hHHHHHHHHHhcCCCCcEEEEec----cchhh---hhhccccCCCCC
Q 014863 172 IYETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLG---HLQSMGLDFPKN 229 (417)
Q Consensus 172 ~~Eav~~ADiViLavp-d~--------------a~~~Vl~eI~p~Lk~GaiL~~a~----G~~i~---~~~~~~i~~~~d 229 (417)
..+++++||++|+||| |. .+.++.++|.+++++|++|++-+ |..-. .+.+ . .++
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~---~-~~g 147 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---N-SKG 147 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh---h-CCC
Confidence 6788999999999996 22 33467778999999999876443 44311 1211 0 112
Q ss_pred Cc-EEEeccC--CchhhHHHHHhhcccccCCCceEEE-eec-CCCCHHHHHHHHHHHHHhCC-Ccccccchhhhhhhhcc
Q 014863 230 IG-VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSF-AVH-QDVDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIF 303 (417)
Q Consensus 230 i~-VI~v~Pn--~pg~~vr~ly~~G~e~~G~Gv~~li-av~-qd~sgea~e~a~al~~aiG~-~~~iett~~~E~~~dlf 303 (417)
.+ .+...|- .||..+++++. .+-++ .-. .+...++.+.+.++...+-. ..++.++. ++-++..+
T Consensus 148 ~~f~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K~ 217 (473)
T PLN02353 148 INFQILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSKL 217 (473)
T ss_pred CCeEEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHHH
Confidence 33 3556662 34444433332 44443 212 22225678888888887742 22333333 22222222
Q ss_pred cccccccchHH----HHHHHHHHHHHHcCCCHHHHHH
Q 014863 304 GERGILLGAVH----GIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 304 geqtvL~G~~~----a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
- .++.- +++..+.+.+-+.|++..+...
T Consensus 218 ~-----eN~~ra~~Iaf~NEla~lce~~giD~~eV~~ 249 (473)
T PLN02353 218 A-----ANAFLAQRISSVNAMSALCEATGADVSQVSH 249 (473)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2 22222 2666677777777777665544
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=80.66 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-----------------CCcCCHHh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-----------------GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-----------------~~~~~~~E 174 (417)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+.. ..|..+.. ....+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99875 565555433332 22321100 01357788
Q ss_pred hhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEEEec
Q 014863 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 175 av~~ADiViLavpd~----------a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++++|++|+|+|.. ...++++.|.++++++++|++-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 899999999999822 23467788999999999887554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.1e-06 Score=86.54 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4788 9999999999999999999988 9998887655333 4566778886 356788999999999988
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 64 45565 4778899999988766544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=83.20 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=72.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| +|++|||+|.+|.++++.|+.. |.+|.+.+|+.. ..+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 35678 9999999999999999999998 988888877643 3566677787631 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+.. +-++....|+++.+|++.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2245677899999988765
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-06 Score=82.09 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... .+.+.++++.++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665 34444344445555566421 15689999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
+.++....+ +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988876654 4565 4444444
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-06 Score=86.26 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++.++...+ ...+...|+. +.+.+++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999998 9998887765444 3455566876 357889999999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. ..++. +....||+|.+|+.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 33565 5778899999988777665
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-06 Score=83.37 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=61.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|+|||.| .||.++|.+|.+. |..|.++++.. .++++++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 36889 999999996 9999999999999 99998876541 257788999999999
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~-~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++..... ..+ +++|++|++++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEec
Confidence 99976442 233 89999888763
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=67.24 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.+|..+...+++. ..+.+++...+.+. +....++..|+.. ..+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999999887 11446554445444 3344567788875 788999987 79999999999
Q ss_pred hhHHHHHHHHHh
Q 014863 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~a~~~Vl~eI~p 200 (417)
..+.++......
T Consensus 73 ~~h~~~~~~~l~ 84 (120)
T PF01408_consen 73 SSHAEIAKKALE 84 (120)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999998877654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=85.56 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+.. .+.+++++++|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3788 9999999999999999999988 9998776654332 34667788873 47889999999999876
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~ 214 (417)
... .++ .+.+..||+|.+|+.++-+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 643 333 5677889999998866544
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=73.96 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=98.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC--------cCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~--------~~~~~Eav~~ADiVi 183 (417)
|||+|+|.|.||.-++..|.+. |.+|.+..|. +..+.-.+.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 8777776665 22556666677543211 112235567899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEE-Eeccch-hhhhhccccCCCCCCcEE-Eecc-----CCchhhHHHHHhhccccc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVI-AVCP-----KGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~-i~~~~~~~i~~~~di~VI-~v~P-----n~pg~~vr~ly~~G~e~~ 255 (417)
++|+-.+..++++.+.|.+++++.|. +--|.. .+.+.. .+|.. +++ .+.+ ++|+.+. ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 99999999999999999999998654 556775 333443 44544 332 2333 4444442 11
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 256 G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
|.|...+=-+..+.+ +..+...+.|...|..
T Consensus 140 g~g~~~ig~~~~~~~-~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTVIGELRGGRD-ELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEEEccCCCCch-HHHHHHHHHHHhCCCC
Confidence 334444211122222 4455555566777765
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=82.99 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=73.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+++.++.. |.+|++.++. +.....|...|+.. .+.+++++.+|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEECC
Confidence 4788 9999999999999999999998 9988776554 44578888899863 46678899999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~ 214 (417)
... .++. +....|++|.+|+.++.+
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 643 3454 467889999988766544
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=70.80 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=73.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC----------cCCHHhhhccCCeEE
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~----------~~~~~Eav~~ADiVi 183 (417)
|+|||.|+||.-+|..|.+. |++|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 79999999999999999988 99988877753 3455566677542111 111124567899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccch-hhhhhc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQS 221 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~-i~~~~~ 221 (417)
+++|-.+..++++.+.+++.+++.| ++--|+. ...+.+
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~ 112 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE 112 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH
Confidence 9999999999999999999998654 4666776 334443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=80.56 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+.| ++|+|||.|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 678 9999999999999999999986 5 4677788776666677777776421 0234567889999999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEEEec
Q 014863 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~L-k~GaiL~~a~ 212 (417)
|.....++++.+.... .++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543332 2455666554
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=67.53 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.6
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcC-ceecCCCcCCHHhh-hccCCeEEEeecc
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G-~~~~d~~~~~~~Ea-v~~ADiViLavpd 188 (417)
||+||| .|.+|..++..|.+. .++++... .++.+.....+...+ +....-...+.++. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 689999 589999999999884 15554433 222111111122222 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999887777778999999999885
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.9e-05 Score=79.29 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHc---C--ceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
++|+|||+|.||..+++.+.... + .+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~-----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR-----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 89999999999999998776520 3 47888888766655555542 4 332 46788999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
||.. ..++.. ..+++|++|.
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEE
Confidence 9865 233321 4578898543
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00049 Score=66.62 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=127.8
Q ss_pred HHcCceecCCCcCCHHhhhccCCeEEEeecc-hhHHHHHHHHHhcCCCCcEEEEeccchhh-hhhccccCCCCCCcEEEe
Q 014863 158 RAAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 158 ~~~G~~~~d~~~~~~~Eav~~ADiViLavpd-~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~-~~~~~~i~~~~di~VI~v 235 (417)
++.|+.+ .++..|++++||+||.=+|- ..|+++++++.+.+++|++|+.++-+... |.....-.=+++.+|-..
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 3467775 56788999999999999884 45679999999999999999988766432 211000122568899999
Q ss_pred ccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH
Q 014863 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG 315 (417)
Q Consensus 236 ~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a 315 (417)
||-+ .+.+ +|--+ |+ ..-++.++.+..-+|..-.-+. .+. ..-.|.|-.+-.|..+.+
T Consensus 199 hpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk------~pa~llgpvcdmcsavta 256 (343)
T COG4074 199 HPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFK------VPAYLLGPVCDMCSAVTA 256 (343)
T ss_pred CCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-ccc------CcHHhhchHHHHHHHHHH
Confidence 9944 3442 34433 44 7778888888776665543322 221 122577787778888888
Q ss_pred HHHHH---HHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 316 IVESL---FRRFT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 316 ~iea~---~~~~v--~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
++-+. |+-+| -.|-|.+-|...+.+.+. .+++++.+.|++.|-+.+.
T Consensus 257 ivyagll~yrdavt~ilgapadfaqmma~eal~-qi~~lmee~gidkmeeald 308 (343)
T COG4074 257 IVYAGLLTYRDAVTDILGAPADFAQMMAVEALQ-QIAKLMEEEGIDKMEEALD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHHHHhhhhHHHhhcC
Confidence 66553 33332 469999999999999998 9999999999999999886
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.2e-05 Score=73.93 Aligned_cols=98 Identities=21% Similarity=0.240 Sum_probs=70.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecC-CC--c----CCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEEN-GT--L----GDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d-~~--~----~~~~Eav~~ADiVi 183 (417)
|||+|||.|.||+-+|-.|.+. |.+|.+..|..+ ..+.-. +.|+...+ +. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 998888777532 233333 23543210 00 0 01112235789999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccchh
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i 216 (417)
++||-....++++.+.|++.++++| .+--|+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 9999999899999999999998865 46678863
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.5e-05 Score=77.30 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=59.7
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|+||| .|.||.++|.+|.+. |+.|.++..+. .++++++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5889 9999999 999999999999998 99988874221 1356888999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.... +++. ++++|++|++++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 997654 2221 289999888764
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.7e-05 Score=77.73 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=63.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
+++||||+|.||..+++.+.... ...+|.+++|..++....+. +.|+.. ..+.+.+|++++||+|+.|||.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecCC
Confidence 78999999999999998886641 02367777776554433333 345321 0157899999999999999986
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. .++. ...++||+.|.-++...
T Consensus 203 ~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 203 RK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CC--cEec--HHHcCCCCEEEecCCCC
Confidence 32 2332 23468999877665443
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=69.34 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC---ceecCCCcCCHHhhhccCCe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ADi 181 (417)
..++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+ +.. ....+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 47889 9999999999999999999999 88 48899998777667776652 211 014456678899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCC-cEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a~ 212 (417)
||.+||.... .+-++..+...+. .+++|.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999996654 1222333322222 3677664
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=70.17 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++||+|||+ |.||..++..+.+. .+++++...+.+..........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 479999998 99999999988764 15666554544332222223334432 468888888999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeccchhhh
Q 014863 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~ 218 (417)
...+++..... .|. +|+-..|++...
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 98777765543 454 343355776543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.5e-05 Score=71.99 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=51.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiVi 183 (417)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.++... ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 357899 9999999999999999999999 9998866655333333333446553 23455553 799998
Q ss_pred Eeecc
Q 014863 184 LLISD 188 (417)
Q Consensus 184 Lavpd 188 (417)
.|..-
T Consensus 91 p~A~~ 95 (200)
T cd01075 91 PCALG 95 (200)
T ss_pred ecccc
Confidence 66553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.8e-05 Score=74.81 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=59.8
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|+|||. |.||..+|..|.+. |..|.++.. + ..++++.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEEe
Confidence 5889 99999999 99999999999998 998887621 1 12577889999999999
Q ss_pred ecchhHH-HHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~-~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++..... ..+ +++|++|++++
T Consensus 209 vg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 209 IGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred cCccccCCHHH------ccCCcEEEEec
Confidence 9976552 222 89999988763
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.3e-05 Score=79.74 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 3778 9999999999999999999988 87 788888876655567777664310 123566788999999999
Q ss_pred ecchh
Q 014863 186 ISDAA 190 (417)
Q Consensus 186 vpd~a 190 (417)
|+...
T Consensus 250 T~s~~ 254 (423)
T PRK00045 250 TGAPH 254 (423)
T ss_pred CCCCC
Confidence 98443
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=70.40 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--cCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
|+||||||+|.||..+++.|.+. .++++......+......... .+... +.+.+++-.+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 57999999999999999999775 134433333222111111111 24443 56777764569999999999
Q ss_pred hhHHHHHHHHHhcCCCCc-EEEEecc
Q 014863 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
..+.++...++ +.|+ +++...|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 98877776654 3455 4444444
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=68.79 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=57.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH--cCceec--CC---CcCCHHhhhccCCeE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--d~---~~~~~~Eav~~ADiV 182 (417)
|+||+|||.|+||..+|..+... |+ +|++.+...+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 68999999999999999999877 65 777776643322221211 111000 00 12345 568999999
Q ss_pred EEeec--c--------------hhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 183 LLLIS--D--------------AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 183 iLavp--d--------------~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|+++. . ....+++++|.++..++.+|+.+-...
T Consensus 75 ii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d 123 (307)
T PRK06223 75 VITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD 123 (307)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 99863 2 112345556666664443444554443
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=73.47 Aligned_cols=91 Identities=22% Similarity=0.184 Sum_probs=65.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc---CceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||+|.||..++..+.... +. +|.+++|...+..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 89999999999999999997530 44 6788888766555555543 33321 3578899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
... .++. ..++||+.|.-++...
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAFT 220 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCCC
Confidence 654 3343 2478998887665543
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00035 Score=67.81 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=103.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceec--------C-----
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N----- 166 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------d----- 166 (417)
|+.|+|||.|.||..+|+-...+ |++|++.+++ .+.+.+|.+ .+.... +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999999 9999887665 333333332 121110 0
Q ss_pred -CCcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
.+..+..+++++||+||=++-...- .+++++|-...++.+++. -.+.+.+..+.. .....-.|...|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1145677889999999866654333 246666766677887764 566777766644 222334788888877777
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
++. +-+ +| -+.+.+.+.......+.+.+|-.
T Consensus 161 vMK-LvE------------Vi-r~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE------------VI-RTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh------------hh-cCCCCCHHHHHHHHHHHHHhCCC
Confidence 753 222 12 26678888888889999999965
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=76.86 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+..+..+.+...|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 4778 9999999999999999999988 8 5788888876555566666664310 124566888999999999
Q ss_pred ecchh
Q 014863 186 ISDAA 190 (417)
Q Consensus 186 vpd~a 190 (417)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00053 Score=67.48 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEec-CCchhH--HHHHH-----cCceecCCCcCCHHhhhccCCe
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~d~~~~~~~Eav~~ADi 181 (417)
|+||+||| +|.||..+++.+.+. .+++++...+ .++... ..+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 46999999 699999999999864 1677655554 332211 12222 24442 4677777567999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhH--HHHHh-hcccccCC
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYV-QGKEINGA 257 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~-~G~e~~G~ 257 (417)
|+.++||..+.+++..... .|. +|+-..|++....+.-...-.+.---+.+.||++--+. -++.+ ..+-....
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~ 148 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDY 148 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCC
Confidence 9999999998887766543 344 45545688644332200011111123566777764441 11111 10000011
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014863 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~q----d-~sgea~e~a~al~~aiG~ 286 (417)
.+- ++-.|. | +||.++.+++.+....+.
T Consensus 149 die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 149 DIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 122 233333 2 488999988888877653
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00032 Score=75.46 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=60.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+.+ ++|+|||.|.||..++++|... |. +|++.+|+..+....+... |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 678 9999999999999999999988 86 6888888766656666554 2211000134667889999999999
Q ss_pred ecch---hHHHHHHHHH
Q 014863 186 ISDA---AQADNYEKIF 199 (417)
Q Consensus 186 vpd~---a~~~Vl~eI~ 199 (417)
|+-. ...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 8632 2345665554
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=67.43 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=93.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-------------------HHHHHHcC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G-~~~~d~~~~~ 171 (417)
.+|+|||+|-+|..+|..+.++ |++| +|.+-+++. .+.+.+.| +.. +++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7999999999999999999999 9886 465544321 23455555 332 345
Q ss_pred HHhhhccCCeEEEeecchhH----------HHHHHHHHhcCCCCcEEEEe----ccch---hhh-hhc-cccCCCCCCcE
Q 014863 172 IYETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLS----HGFL---LGH-LQS-MGLDFPKNIGV 232 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~----------~~Vl~eI~p~Lk~GaiL~~a----~G~~---i~~-~~~-~~i~~~~di~V 232 (417)
.++ ++.||++++|||...- ....+.|++.|++|++|++= .|.+ +.. ++. .++.++.|+.
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~- 156 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY- 156 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee-
Confidence 554 4599999999983211 12335799999999987643 3443 122 222 4566666533
Q ss_pred EEecc--CCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 233 I~v~P--n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.-+| -.||...+++-. .+-+|. .++++..+.+.++-+.+=..
T Consensus 157 laysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~ 201 (436)
T COG0677 157 LAYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEG 201 (436)
T ss_pred EeeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEE
Confidence 33333 233555443332 333332 45778888888887776544
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00025 Score=72.56 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++++|||.|.|+..+++.+..-. .+ +|.+++|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEecC
Confidence 78999999999999999887641 33 788888875543333322 24321 015689999999999999997
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
......+++. ..++||+.|.-++.+.
T Consensus 203 S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 203 DKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred CCCCCceecH--HHcCCCcEEEecCCCC
Confidence 5332234431 3568999877665554
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=71.36 Aligned_cols=74 Identities=11% Similarity=0.239 Sum_probs=50.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+.++...+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999999765 156665444443211 1222234332 35677778899999999998777
Q ss_pred HHHH
Q 014863 192 ADNY 195 (417)
Q Consensus 192 ~~Vl 195 (417)
.+..
T Consensus 74 ~~~~ 77 (324)
T TIGR01921 74 IPEQ 77 (324)
T ss_pred HHHH
Confidence 5444
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00071 Score=69.01 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=63.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceec-----------CC---CcCCHHhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------d~---~~~~~~Ea 175 (417)
|.||||+|+|.||..+++.+.+. .+++++...+...... ..+...|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 47999999999999999998764 1567665555433222 22333343200 00 02356777
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
..++|+|+.++|+....+..+.. ++.|+.+++.+|-
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78999999999999888877644 3457777777763
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0004 Score=60.04 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEE-EecCC--chhHHHHHH--cCceecCCCcC-CHHhhhccCCeEEEe
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~d~~~~-~~~Eav~~ADiViLa 185 (417)
||+||| .|.+|..+.+.|.+. ..++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1344333 33332 122322211 11211 0011 233456999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+|.....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888776 4578888888774
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00048 Score=70.18 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=67.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+...++|||+|.|+..|.+.++.-. ++ +|.++.|..+...+.+. +.+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~-----~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR-----DIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC-----CccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 3478999999999999999998751 44 67788887655444442 333210 11367899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
||... .++. ...++||+.|.-+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 3332 2457899988877664
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00058 Score=59.62 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=60.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHH-----HcCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|+|+ |.||..+++.+.+. .++++..+.++..... +... ..|+.. ..+.++++..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 1777665554433100 0011 234443 46889999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhh
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~ 217 (417)
|-.+-|+...+.++....+ |. +|+=..|++-.
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE 104 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH
Confidence 9999888777777765544 44 45567888743
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00044 Score=69.77 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 88999999999999998876431 44 677777765554444432 24421 11567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|.. + .++. ..+++|+.|.-++.+.
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCC
Confidence 965 2 3443 5679999887666543
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00035 Score=70.09 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=65.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++++|||.|.||..+++.+..- +.+ +|.+++|..++..+.+.+ .|+.. ..+.+.+|++.+||+|+.+|
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEec
Confidence 8899999999999999998774 144 688888776554444433 24321 11568999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+... .+++ ...++||+.|.-++.+.
T Consensus 191 ~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 191 NSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCCC--cEec--HHHcCCCceEEecCCCC
Confidence 9542 3332 23568888777665543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00034 Score=64.88 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=62.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----CceecCCCcC---CHHhhhcc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLG---DIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~---~~~Eav~~ 178 (417)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+..+..+.+... +......... +..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5678 99999996 99999999999988 888888777644433333322 2110000012 23478899
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+||.++|..... ........+++.+++|..
T Consensus 98 ~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999999977651 112222345566777653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00038 Score=70.35 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++++|||+|.||..+++.|... .++ +|.+++|..++..+.+.+. |+... .+.+.++++.+||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 054 6888888766555555432 54321 1467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|... .++. ...+++|+.|...+
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEeeC
Confidence 9643 2332 12478898776443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=66.48 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----------cCceecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||.|.||..+|..+... |+ +|++.+.........+.+ .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 76 776666543321112110 01110 1246665 78999
Q ss_pred eEEEeec
Q 014863 181 LVLLLIS 187 (417)
Q Consensus 181 iViLavp 187 (417)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999998
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00062 Score=67.49 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=60.6
Q ss_pred CEEEEEcccchH-HHHHHHHHhhhhhhcCC--ceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEe
Q 014863 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG-~AiA~~Lr~s~~~~~~G--~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLa 185 (417)
.||||||+|.++ ..++..+++. + +.++ +.++..++..+.+.+.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 789999999665 5688888876 4 3333 33455556667888888751 26789998875 5999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
+|+..|.++... .|+.|+.|
T Consensus 75 tp~~~H~e~~~~---AL~aGkhV 94 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHV 94 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEE
Confidence 999999987743 34455543
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00033 Score=73.30 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..+.| ++|.|||.|-||.+++.+|.+. |. ++++.+|+..+..+.+.+.+ .... ...+..+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~~--~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASAH--YLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeEe--cHHHHHHHhccCCEEE
Confidence 35778 9999999999999999999988 86 78888998777777777665 2210 1344567889999999
Q ss_pred Eeecch
Q 014863 184 LLISDA 189 (417)
Q Consensus 184 Lavpd~ 189 (417)
.||+..
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 999843
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=64.24 Aligned_cols=92 Identities=24% Similarity=0.304 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
++|+|||||.+|..+..-+++- ..+++.++. +|..++..+.+...+.. .+.+++|.+++.|+|+=|-.+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4899999999999999988763 012444444 44433333333333333 25789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G~ 214 (417)
..+...+++. .|. +|+.+-|-
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9988877654 343 55566553
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00053 Score=69.31 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|.||..++.++... .++ .|.+++|..++..+.+.+ .|+... .+.+.+++++ +|+|++||
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVT--VAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999754 145 455566654433333332 243210 1457888887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|... .+++ ...+++|+.|.-++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3332 2346899987755544
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0005 Score=68.33 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC-----ceecCCCcCCHHhhhccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~Eav~~AD 180 (417)
.+++ ++|.|||.|-+|.+++..|.+. |. +|.+.+|...+..+.+...+ ... ....+..+.+.++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 4567 8999999999999999999998 87 78888887666555555431 111 00223455678899
Q ss_pred eEEEeecchh
Q 014863 181 LVLLLISDAA 190 (417)
Q Consensus 181 iViLavpd~a 190 (417)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999653
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00049 Score=70.55 Aligned_cols=94 Identities=24% Similarity=0.267 Sum_probs=75.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
--+.| |++.|.|||-.|...|+.+|.. |.+|+|..-..-+. -+|.-+||. +...+|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~A-leA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRA-LEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchHH-HHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 35677 9999999999999999999988 99998876543443 455568998 57899999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~ 215 (417)
|-... |+. +.+..||+|++|.-++-|+
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEecccccc
Confidence 98754 443 5666799999998776675
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00062 Score=70.16 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=65.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-C-CCcCCHHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d-~~~~~~~Eav~~ADiViLa 185 (417)
+.+ .+|.|||.|.+|...++.++.. |.+|++.+++..+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 98888777654432233333443210 0 0012356788999999999
Q ss_pred ecc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd--~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2223333 45667789999888765
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0017 Score=65.00 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.+|||||+|++|.-++..+.+. .++++....+.+. ..++.+++.|+... ..+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~~---~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKTS---AEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCEE---ECCHHHHhcCCCCCEEEECCC
Confidence 4899999999999998888764 1455543333333 23567888887531 346777774 6788999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+..|.+...... +.|+.|++-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999988876554 45776654443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00027 Score=71.07 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++++|||+|.||..+++.+..-+ ++ +|.++.|+.++..+.+.. .|+.. ..+.+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 78999999999999999998752 44 677888775433333322 24432 125789999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
......+++ ...+++|+.|.-++..
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 655212332 2357888877755544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=65.71 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=65.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhc-----cCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~-----~ADiViL 184 (417)
.||||||+|++|..++..+.+. .++++....+.+. +..+.|++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888765 1455544443333 3446688888763 1356788874 5899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
++|...+.+...... +.|+.+++...
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999999988877654 35777776544
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00044 Score=67.75 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---CceecCCCcCCHHh-hhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~E-av~~ADiVi 183 (417)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|...+..+.+... |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 457 8999999999999999999998 888888888755444444432 2211 122332 346899999
Q ss_pred EeecchhHHHHHH-H-HHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYE-K-IFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~-e-I~p~Lk~GaiL~~a 211 (417)
.++|.....++-+ . -...++++.+++|+
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999753322100 0 02346677777655
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00078 Score=68.06 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=65.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHH---HHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
-++++|||+|.|+..+++.+..-. .+ +|.+++|..++..+.+ .+.|+... .+.+.++++++||+|+.+|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEec
Confidence 378999999999999999987641 33 7888888765544333 22344321 1468899999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+... .+++ ...++||+.|.-++.+.
T Consensus 201 ~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 201 PSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 8442 3442 13578999877665543
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0038 Score=60.86 Aligned_cols=220 Identities=11% Similarity=0.049 Sum_probs=129.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
..++|||.|..|.+..+..-+- ++. ++. ..+++.+.|+ .++..+ .+.+...+-.++||.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs~-i~srS~~~a~~LaE~~~a~p-----~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CSA-ISSRSRDRAQNLAETYVAPP-----LDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--ehh-hhhcCHHHHhhchhccCCCc-----cchhhChhhhceEEecch
Confidence 6799999999999954433222 222 111 1223334443 333332 344445556678888888
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhh-hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
+..+.++.... ..+||++|..++|++-.. +.. .=+.+.--..+||+.......+-.++- ++.-..|+ .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 87555555433 347899999999997332 211 101234446799998877766655553 23332232 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccch-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA-VHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~-~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~ 345 (417)
. +.....++.+|+.-+|+....- .|..-.+|+...+..+. +....--..+....+|.++-++.-+..- +.++
T Consensus 146 a--D~~g~ai~q~la~emgg~~f~V----~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~p-L~~g 218 (289)
T COG5495 146 A--DDVGYAIVQSLALEMGGEPFCV----REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGP-LARG 218 (289)
T ss_pred c--cccccHHHHHHHHHhCCCceee----chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehH-HHHH
Confidence 3 3345567889999999874221 35556788887666333 3334444567778999999888775222 3346
Q ss_pred HHHHHHHhcHH-HHHhccc
Q 014863 346 ISKIISTQGML-AVYNSFS 363 (417)
Q Consensus 346 ~~~li~e~G~~-~l~~~vs 363 (417)
..+-+.+.|.. .|---|+
T Consensus 219 ~~~n~~qrg~a~aLTgpVa 237 (289)
T COG5495 219 ALENTLQRGQACALTGPVA 237 (289)
T ss_pred HHHHHHHhhhhhcccCCcc
Confidence 66777777764 4444444
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0007 Score=70.82 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-++..+.|.+.|... -.+.+..+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 44788 9999999999999999999999 85 78899999888899999999542 124456778999999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+|.
T Consensus 245 sTs 247 (414)
T COG0373 245 STS 247 (414)
T ss_pred ecC
Confidence 986
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=61.45 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.7
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..|+| ++|.|||.|-| |..+++.|... |.+|.+.+|.. .+..+.+.+||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 46889 99999999997 88899999998 88887777641 145678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2321 1356777777654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0035 Score=63.32 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=45.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH-------cC--ceecCCCcCCHHhhhc
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AG--FTEENGTLGDIYETIS 177 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G--~~~~d~~~~~~~Eav~ 177 (417)
.+. +||+|||.|++|.+++..+... |+ ++++.+.+.+.....+.+ .+ ... ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 355 8999999999999999999887 73 666666543322122221 11 111 0124555 789
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|+++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999999
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=67.52 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--------------C---CCcCCHHh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------N---GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------d---~~~~~~~E 174 (417)
|||+|||.|-.|...+..|.+. |++|+.. +.++...+. ...|..+. + ..++|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999999 9987654 443322222 22222111 0 01468889
Q ss_pred hhccCCeEEEeecchh----------HHHHHHHHHhcCCCCcEEE
Q 014863 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 175 av~~ADiViLavpd~a----------~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+++++|++|+|||... ...+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 9999999999997321 2346678999997766654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0021 Score=64.23 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=46.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc-------Cc--eecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~--~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999988 74 6777777654433333321 11 11 12344 4578999
Q ss_pred eEEEeecc
Q 014863 181 LVLLLISD 188 (417)
Q Consensus 181 iViLavpd 188 (417)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999975
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00057 Score=67.41 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCc-CCHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~Eav~~ADiViL 184 (417)
.+++ +++.|||.|-+|.+++..|.+. | .+|++.+|+..+..+.+...+... .-.+ .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 9999999999999999999988 8 488888887655545544433110 0001 133467789999999
Q ss_pred eecchhH
Q 014863 185 LISDAAQ 191 (417)
Q Consensus 185 avpd~a~ 191 (417)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0029 Score=64.53 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=71.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhh-cCCceEEEEecCC---chhHHHHHH-----------cCceec-C-CCcCCHHh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEE-N-GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~-~~G~~Vivg~r~~---~~s~~~A~~-----------~G~~~~-d-~~~~~~~E 174 (417)
.||+|||.|+=|.++|+.+..+-.+. -+..+|..+.+.. .+.....+- -|+... + -++.|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 78999999999999999987762222 1122444443321 110111110 011100 0 12578899
Q ss_pred hhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchh
Q 014863 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i 216 (417)
++.+||+++..+|.+-...+.++|..+++++.. |+.+-||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 778888753
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00065 Score=69.60 Aligned_cols=192 Identities=18% Similarity=0.153 Sum_probs=113.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-H-cCceecCCCcCCHHhhh---ccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~-~G~~~~d~~~~~~~Eav---~~ADiViLav 186 (417)
..||.||++.||+++++|+.+. |+.|.+++|..++.-+... + .|.... ...+++|.+ +.--.|||++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 9999999998665432221 1 232210 145777764 6778999999
Q ss_pred cchhHHH-HHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceE
Q 014863 187 SDAAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 187 pd~a~~~-Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
+....++ +++++.|+|.+|.+|++-+--. ....++ .-.+++=||..--.+ |.|.--.| |+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~G-PS 143 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYG-PS 143 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccC-Cc
Confidence 9877765 6688999999999988754321 111111 111233333322211 11000111 22
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhccccccc--ccchHHH--------HHHHHHHHHHH-cCCC
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI--LLGAVHG--------IVESLFRRFTE-NGMN 330 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtv--L~G~~~a--------~iea~~~~~v~-~Gl~ 330 (417)
+-|. -+.+++..++.++..+-.. +- --|+..+-.|+.+. ..=++|. +|--.|+.+.. .|++
T Consensus 144 -lMpG--g~~~Awp~ik~ifq~iaak-v~----~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls 215 (487)
T KOG2653|consen 144 -LMPG--GSKEAWPHIKDIFQKIAAK-VS----DGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLS 215 (487)
T ss_pred -cCCC--CChHHHHHHHHHHHHHHHH-hc----CCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCc
Confidence 2233 3678888888888888321 10 02445555555421 0111111 45557888877 7888
Q ss_pred HHHH
Q 014863 331 EDLA 334 (417)
Q Consensus 331 ~e~A 334 (417)
-++-
T Consensus 216 ~~ei 219 (487)
T KOG2653|consen 216 NDEI 219 (487)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0021 Score=65.49 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceec-CCCcCCHH-hhhccCCeEEEee
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-d~~~~~~~-Eav~~ADiViLav 186 (417)
|+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999996 99999999999765 14555443433222111222111 1100 00122222 2457899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+..+.++..++.. .|..|+|.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888877643 5888887765
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0031 Score=54.63 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=57.5
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG----~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+|+||| -+..|.-+.++|++. |++|+..+.+... -.|... +.+++|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788899999999998 9887654433211 145553 6678874478999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+....++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987654 344455555543
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=61.47 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=62.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEecCC----chh-------HHHHHHcCceecCCCcCC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~d~~~~~ 171 (417)
..+++ +||.|+|.|.+|.+++..|.+. |. ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35788 9999999999999999999988 86 487888872 221 23444432211 0136
Q ss_pred HHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
..++++++|+||-++|+.... +++...|.++.+|.+
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ 126 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFA 126 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEE
Confidence 778889999999999865543 233444556666553
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=57.27 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC--C--------CcCCHHhhhccCCeEEEeecchh
Q 014863 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d--~--------~~~~~~Eav~~ADiViLavpd~a 190 (417)
.||..+|..|.++ |++|.+..|. +..+...+.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999998 9998887774 334445556754311 1 0112333 668999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
..++++.+.|++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999998887655 556775
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0049 Score=62.40 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCch----hHHHHHH---cC--ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR----SFAEARA---AG--FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~----s~~~A~~---~G--~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|+||.++|..+... |+ ++++.+..... .++.... .+ .... ...+. +++++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999998887 76 76555544332 1211111 11 1110 12455 57899999
Q ss_pred EEEee
Q 014863 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99966
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=65.23 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=59.4
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| ++|.|||.|. +|..+|..|... |..|++..++. .+..+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 155 DLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEEC
Confidence 6899 9999999988 999999999988 88888776531 2467889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++-.. ++.. .++++|++|++++
T Consensus 209 vg~p~---~i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 209 VGKPG---LVTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCc---ccCH--HHcCCCcEEEEcC
Confidence 98643 2322 2478999888765
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=67.14 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=58.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcC---c--eecCCC-cCCHHhhhccCCeEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENGT-LGDIYETISGSDLVL 183 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~d~~-~~~~~Eav~~ADiVi 183 (417)
|++|.|||+|.+|.++|..|.++ | .+|.+.+|+.++ .+++.+.+ + ...|.. .....+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 68999999999999999999988 7 689999887544 33443332 1 110110 123557899999999
Q ss_pred EeecchhHHHHHH
Q 014863 184 LLISDAAQADNYE 196 (417)
Q Consensus 184 Lavpd~a~~~Vl~ 196 (417)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0013 Score=65.70 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=59.1
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| ++|.|||-|.. |..++.-|... |..|.+.... ..+..+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 5789 99999999988 99999999988 8888764321 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++-.. ++.. .++|+|++|++++
T Consensus 209 vG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 209 VGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCCcC---ccCH--HHcCCCCEEEEcc
Confidence 99432 3432 5689999888764
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0036 Score=62.80 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--Cceec---CCCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~~---d~~~~~~~Eav~~ADiViL 184 (417)
|||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 84 6666665433222222221 11000 0001344 56899999999
Q ss_pred eecc
Q 014863 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0038 Score=55.78 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||. |+.|.++|..|... ++ ++.+.++...+....+.+ .+... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 69999999 99999999999988 65 666666653333333332 11110 001245678899999
Q ss_pred EEEeec
Q 014863 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
|+++.-
T Consensus 73 vvitag 78 (141)
T PF00056_consen 73 VVITAG 78 (141)
T ss_dssp EEETTS
T ss_pred EEEecc
Confidence 999873
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=65.25 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||.|.||.+++..+.... ++ +|.+++|..++..+.+.+. |+.. ..+.+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 43 6777887755555554432 4431 11467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|... .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 33322 23678876654
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0018 Score=68.90 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+.... ...+.. .+.++|+||+|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4577 8999999999999999999998 98888887765444444444332210 011222 257899999999
Q ss_pred cchh
Q 014863 187 SDAA 190 (417)
Q Consensus 187 pd~a 190 (417)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0049 Score=61.11 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=59.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLavpd~a 190 (417)
+||||||||.||..++..|.+.. ..++++...+++.....+... ..... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~-~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALA-GRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhh-ccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999986530 002454444554332222221 22332 6788885 688999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
..+..+.++. .|. +++.+-|
T Consensus 75 v~e~~~~iL~---~g~dlvv~SvG 95 (267)
T PRK13301 75 IAEHAEGCLT---AGLDMIICSAG 95 (267)
T ss_pred HHHHHHHHHh---cCCCEEEEChh
Confidence 8887776643 344 4555545
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0098 Score=50.04 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=60.6
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeecch
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISDA 189 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavpd~ 189 (417)
|.|+|+|.+|..+++.|++. +.+|++..+ +....+.+.+.|+....+...+.+ .-+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~-d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDR-DPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEES-SHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEEC-CcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 67999999999999999998 877766554 455678888888654322233332 1368999999999987
Q ss_pred hHHHHH-HHHHhcCCCCcEEEEecc
Q 014863 190 AQADNY-EKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 190 a~~~Vl-~eI~p~Lk~GaiL~~a~G 213 (417)
...-.+ ..+........++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665333 333333333445555544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0019 Score=53.83 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd~ 189 (417)
.+|+|+|.|+.|.+++..+.+. . |+.+....+.+.+.... .-.|+.. ..+++++.+. .|+.+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 54433333333321111 1125553 3477777766 99999999999
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEec
Q 014863 190 AQADNYEKIFS-CMKPNSILGLSH 212 (417)
Q Consensus 190 a~~~Vl~eI~p-~Lk~GaiL~~a~ 212 (417)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 98888877544 3322 555554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=65.68 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=61.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc-----Cc---eecCCCcCCHHhhhccCC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGSD 180 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~---~~~d~~~~~~~Eav~~AD 180 (417)
+-++++|||+|.|+..+.+.+..-. ..+ +|.+++|..++..+.+.+. |+ .. +.+.+|++++||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~AD 225 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGSD 225 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCCC
Confidence 3478999999999999999987741 024 6788888755444333322 32 22 578999999999
Q ss_pred eEEEeecchhH----HHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQ----ADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~----~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|+.+|+.... ..+++ ...++||+.|.-
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred EEEEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 99999974321 13332 235689987763
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0062 Score=58.58 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCC---HHhh-hccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~---~~Ea-v~~ADiViLav 186 (417)
|+|.|||+|..|.++|+.|.+. |++|++.++..+...+.+. +.+.....+...+ ++++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9998877766544333222 2333221111112 3444 78999999999
Q ss_pred cchhHHHHHHHHH
Q 014863 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~a~~~Vl~eI~ 199 (417)
....+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0046 Score=50.35 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..+++ ++++|+|.|.||..++..|.+. +. ++.+++| |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44778 9999999999999999999887 53 5555444 99999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998654432 2234556788877654
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0057 Score=57.95 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .. .++-+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~-~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EF-EPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CC-ChhhcCCceEEEE
Confidence 36889 9999999999999999999999 8888776654333333333333 221111 11 1345789999999
Q ss_pred eecchhHHHHHHHHH
Q 014863 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~a~~~Vl~eI~ 199 (417)
+|.+...-..+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988876555443
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.006 Score=57.76 Aligned_cols=106 Identities=11% Similarity=0.194 Sum_probs=65.1
Q ss_pred CEEEEEcccchHHHHHHHH--HhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~L--r~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.++.|||+|++|+|++.-- .+. |++++...+.++...-.-. .++.+. ...++++.++ +.|+.+|+||
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 6899999999999998532 234 7788777777554322221 223321 1345666676 7899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEec
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~ 236 (417)
-....++.+.+...=-+ .+|-|+..- +..|+++.|--+.
T Consensus 156 a~~AQ~vad~Lv~aGVk-GIlNFtPv~---------l~~pe~V~V~~iD 194 (211)
T COG2344 156 AEHAQEVADRLVKAGVK-GILNFTPVR---------LQVPEGVIVENID 194 (211)
T ss_pred HHHHHHHHHHHHHcCCc-eEEeccceE---------ecCCCCcEEEEee
Confidence 88777777765432111 255554431 2556665554443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0081 Score=62.29 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcC---CHHhh-hccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG---DIYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~---~~~Ea-v~~ADiViLav 186 (417)
|+|.|+|+|.+|.++++.|++. |+++++..++.. ..+.+.+ .|+....+... ..+++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~-~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEE-RLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHH-HHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 988876665433 3444443 45432111111 23444 78999999999
Q ss_pred cchhHHHHHHH
Q 014863 187 SDAAQADNYEK 197 (417)
Q Consensus 187 pd~a~~~Vl~e 197 (417)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98766554433
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0064 Score=61.45 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=51.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.||||||+|.+|. .++..+... .+++++...+.+.+. .+.+. +... ..+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466766654 156665444443322 12223 2222 568999985 5799999999
Q ss_pred chhHHHHHHHHH
Q 014863 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~a~~~Vl~eI~ 199 (417)
+..+.++....+
T Consensus 74 ~~~H~~~~~~al 85 (346)
T PRK11579 74 NDTHFPLAKAAL 85 (346)
T ss_pred cHHHHHHHHHHH
Confidence 999988776543
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0055 Score=62.29 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 111 INQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 111 ~kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
|.||||||+|.++. .++..+.... .+.+++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999764 4455553320 04566544444433334555555321 1568999985 6799999999
Q ss_pred chhHHHHHHHHH
Q 014863 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~a~~~Vl~eI~ 199 (417)
+..+.++..+.+
T Consensus 74 ~~~H~~~~~~al 85 (344)
T PRK10206 74 ADSHFEYAKRAL 85 (344)
T ss_pred chHHHHHHHHHH
Confidence 999988776543
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0056 Score=61.88 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=93.1
Q ss_pred hhhhccccCccccccccchhhHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcC
Q 014863 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (417)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~ 139 (417)
|.+.-.++-|. .+-|-++-+.|--+|-|-.|-++-+ - ....---+.| |...|.|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dg-i--kraTDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDG-I--KRATDVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhh-h--hhhhhheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 44444444333 5567777777777777666543320 0 0001124566 8888999999999999999988
Q ss_pred CceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 140 G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|..|+|..-..-..++.| -.|+. +.+++|+++++|+++.+|--..+ +..+.+..||.+++|+-.+-|.
T Consensus 237 g~~VivTEiDPI~ALQAa-MeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPICALQAA-MEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchHHHHHH-hhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 888887654433444444 45888 57899999999999998875433 3346778899999998666554
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0039 Score=62.28 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|. .|.+++..|.+. |..|.+.+++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 36889 9999999997 999999999988 8888777652 1245566789999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+... .+. ...+++|++|+++.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996222 232 24578999988764
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0071 Score=60.21 Aligned_cols=64 Identities=30% Similarity=0.284 Sum_probs=40.8
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH---Hc----C--ceecCCCcCCHHhhhccCCeEE
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----G--FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~---~~----G--~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|+|||.|.||..+|..|... |+ +|++.+...+.....+. .. + ... ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999999877 65 77776655332111111 11 1 111 012344 5689999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 977
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0081 Score=61.40 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=58.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceec--CCCc--CCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--d~~~--~~~~Eav~~ADiViLa 185 (417)
+||+|||. |.+|..+++.|.+. .+++++ +..+..+.........+.... +..+ .+.++..+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999999764 134555 323221111111111221000 0001 2455666789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|...+.++..++.. .|..|++.++
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~ 100 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSA 100 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCCh
Confidence 999998888877643 5787887765
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0038 Score=61.97 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=55.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiV 182 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+....-.... +..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 4678 9999999999999999999998 87 68888888666666665433210000011 223556889999
Q ss_pred EEeecchh
Q 014863 183 LLLISDAA 190 (417)
Q Consensus 183 iLavpd~a 190 (417)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0056 Score=64.63 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=66.7
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
++|+|||. |+.|.-+.++|++. |+ +|+..+.+ .. .-.|... +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~-~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPK-AG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCC-CC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 45433322 21 2256664 56888887788999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+|+....++++++.. ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 33455778888885
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0077 Score=64.80 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=65.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--C----C-------CcCC-------
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-------TLGD------- 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d----~-------~~~~------- 171 (417)
.|+.|||+|.+|...++.++.. |.+|++.+++ ....+.++..|.... + + ...+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999988 8887766555 445778887776530 0 0 0001
Q ss_pred ---HHhhhccCCeEEEee--cchhHHH-HHHHHHhcCCCCcEEEEec
Q 014863 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ---~~Eav~~ADiViLav--pd~a~~~-Vl~eI~p~Lk~GaiL~~a~ 212 (417)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578999999988 2111223 3356778899999998764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.017 Score=58.32 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=45.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----c----CceecCCCcCCHHhhhcc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A----GFTEENGTLGDIYETISG 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~----G~~~~d~~~~~~~Eav~~ 178 (417)
.+ +||+|||.|.+|.++|..|... |+ ++.+.+.........+.+ . .... ...+ .+.+++
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i---~~~~-~~~~~~ 73 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI---YAGD-YSDCKD 73 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE---EeCC-HHHhCC
Confidence 35 7999999999999999999988 76 666666544332222222 1 1111 1223 356899
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
||+||++.-
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 999999754
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0097 Score=59.62 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|. .|..++.-|... |..|.+..+. ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 35889 9999999998 999999999888 8888776542 1357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++++|++|++++
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953322 21 15678999988765
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.019 Score=58.41 Aligned_cols=119 Identities=10% Similarity=0.131 Sum_probs=82.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEee
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLav 186 (417)
.||.|-| .|.+|.-+++.+++. |-+|+.|..+.. .... ..|+.. ..+++|+.+. +|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 5899999 599999999999999 999888887643 2221 126664 6789999887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhH
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (417)
|+....+.+.+.... .-..+|+++.||...............-.+..+=||+||-..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~ 153 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIK 153 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEc
Confidence 999999888775442 123477899999744211100011122345567788888553
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0072 Score=69.86 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhc---------CCceEEEEecCCchhHHHHHHc-Cc--eecCCCcCCHHh--
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~d~~~~~~~E-- 174 (417)
+.+++|+|||+|.||..++..|.+. .+.. .+..|.|+++...+..+.+... ++ ...| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3458999999999999999999765 0000 0113666665433333333333 42 1101 345444
Q ss_pred -hhccCCeEEEeecchhHHHHHHHH
Q 014863 175 -TISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 175 -av~~ADiViLavpd~a~~~Vl~eI 198 (417)
+++++|+|+.|+|+..+..+....
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHHH
Confidence 446899999999999888877643
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0073 Score=61.89 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..++| ++|.|+|. |.||..+++.|... .|. ++++..|...+..+.+.+.+.. ...+.++++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999998 89999999999743 043 6777777644444445443311 1346788999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.++...... ++.. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 988743221 1111 2346777777654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.033 Score=50.02 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.6
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeecc
Q 014863 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLavpd 188 (417)
|.|+|. |.+|..+++.|.+. |++|++..|+.++..+ ..++......+.+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887554333 4454432222334 35678899999999984
|
... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.007 Score=63.47 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=48.5
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCceEEEEecCCchhHHHHH--------HcCceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.+.+. .+.... +-.|.+|++.++..+. .+... ..+....-....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 48999999999998766 453210 0115677776654322 22211 11111000014577899999999
Q ss_pred EEEeecchhHHHHH
Q 014863 182 VLLLISDAAQADNY 195 (417)
Q Consensus 182 ViLavpd~a~~~Vl 195 (417)
||.+++........
T Consensus 78 Vi~ai~~~~~~~~~ 91 (423)
T cd05297 78 VINTIQVGGHEYTE 91 (423)
T ss_pred EEEeeEecCccchh
Confidence 99999976655433
|
linked to 3D####ucture |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=53.49 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=58.3
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccC
Q 014863 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (417)
Q Consensus 101 f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~A 179 (417)
||.. -.|+| ++|.|||.|.+|...++.|.+. |.+|.+....-.+ +. .+.+ +....+ ... ++-+.++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~~~--~l-~~l~~i~~~~~-~~~-~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEICK--EM-KELPYITWKQK-TFS-NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCccCH--HH-HhccCcEEEec-ccC-hhcCCCc
Confidence 5544 57899 9999999999999999999999 9888776432111 21 2222 222111 112 2236899
Q ss_pred CeEEEeecchhHHHHHHHHHh
Q 014863 180 DLVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p 200 (417)
|+|+.+|.+...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887766655443
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.11 Score=50.96 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=124.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------hhHHHHHHcCceec----------CCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------d~~~~~ 171 (417)
.||+|+|.|..|+++|.-...+ |++|..++-..+ +...+.++.|.... -+.+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 6899999999999999999888 999887765422 11222233332210 022568
Q ss_pred HHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEEEecc-chhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~~a~G-~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+.|++++|=.|-=|+|..-.- .+|.++-..+.|..+|.-+.. |-...+-. + +-+.-.++-+||--|-.-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCccc----
Confidence 999999998888899966553 477666666666666653332 22221111 1 1123478889995543331
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-hcccccccccchHHHHHHH------HH
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVES------LF 321 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~-dlfgeqtvL~G~~~a~iea------~~ 321 (417)
-.. =+.|+.-.+++..++..++...+|-..+ +...|..- .+=-.|-++|.-.-.++.+ -.
T Consensus 151 ---------PLv-ElVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 ---------PLV-ELVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred ---------chh-eeccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 011 1446777788999999999999995311 11122000 0001111122111112222 35
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 014863 322 RRFTENGMNEDLAYKNTVECIT 343 (417)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~~~l~ 343 (417)
|.-..+|+-|-+|+.-.+||++
T Consensus 218 D~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred HHHHhcCCCcchhcccchhhhh
Confidence 7777899999999999999988
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=62.81 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=67.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCC-------------cCCH
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI 172 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------------~~~~ 172 (417)
..+ .||.|||.|.+|...++.++.. |.+|++.++ +....+.+++.|.... +.. ..+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~-~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDT-RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 346 8999999999999999999888 887665554 4566889999997520 100 0010
Q ss_pred --------HhhhccCCeEEEeecchh--HHHH-HHHHHhcCCCCcEEEEec
Q 014863 173 --------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 --------~Eav~~ADiViLavpd~a--~~~V-l~eI~p~Lk~GaiL~~a~ 212 (417)
.+.++++|+||-++.... .+.+ .++....||+|.+|++.+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122357999999986322 3345 377888899999887663
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=52.27 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999955 7899999999888 8888776532 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.-.. +++ ...+|+|++|++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 232 2457999987744
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0062 Score=57.76 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd~ 189 (417)
++|+|||+|.+|.+++..+... . .|++++...+.+....... -.|+.. ....+..+.+++ .|.|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 1777665555433211111 123321 013356677654 99999999999
Q ss_pred hHHHHHHHHH
Q 014863 190 AQADNYEKIF 199 (417)
Q Consensus 190 a~~~Vl~eI~ 199 (417)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.049 Score=48.90 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~~ADiViLavp 187 (417)
++ ++|.+||+| -|.++|..|.+. |++|+. .+.++...+.+++.+.... ++-+....+.-+++|+|--.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Via-IDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVIV-IDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEEE-EECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 889999999 899999999988 998754 5555666777887776432 2223344577899999999888
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777665557777665444444
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.023 Score=47.96 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.++| ++|.|||.|..|..=++.|.+. |.+|.+..... ...+..+... -...++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4788 9999999999999999999999 98887766542 1111223221 123456688999999999
Q ss_pred cchhHHHHHHH
Q 014863 187 SDAAQADNYEK 197 (417)
Q Consensus 187 pd~a~~~Vl~e 197 (417)
.+....+-+.+
T Consensus 69 ~d~~~n~~i~~ 79 (103)
T PF13241_consen 69 DDPELNEAIYA 79 (103)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98777644433
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.01 Score=60.17 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCCcCCHHhhhccCCeEEEee--c
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLLI--S 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~~~~~Eav~~ADiViLav--p 187 (417)
-||.|||.|-.|..-|+-...- |-+|.+.+.+..+....-...+.... -.+...++|+++++|+||-++ |
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999988766544 77898887764433322222333210 112235788999999999665 5
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEec
Q 014863 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~a~~~-Vl~eI~p~Lk~GaiL~~a~ 212 (417)
-...+. +.+++...||||++|+|++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 555555 4467889999999998764
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.025 Score=56.75 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.||.|.|. |++|..+.++|++. |+.+++...+..-. .+-.|+.. +.+++|+-+. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999995 88999999999988 77644344332000 11246664 6688887776 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~ 217 (417)
....+++++... ..-..++++++||...
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999988655 2334578899999754
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.022 Score=57.12 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=68.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.+|.|.| .|.+|..+-.+|+.. |.+++++..+. +. ..+-.|+.. +.+++|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 799999999999998 88766665543 10 112257764 6688887765 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i 216 (417)
....+++++.... .-..+|++++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999886542 23457889999964
|
ATP citrate lyases appear to form an outgroup. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.011 Score=59.22 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=64.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCcee---cCCCcCCHHhhhccCCe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~---~d~~~~~~~Eav~~ADi 181 (417)
...+| ++|.|+|.|=.+.+++..|.+. |. +|.|.+|+.++..+.+...+-.. ......+. +...++|+
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~-~~~~~~dl 193 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADL-EGLEEADL 193 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhccccccccccccc-ccccccCE
Confidence 34567 9999999999999999999999 96 79999998777666665544110 00001112 22226999
Q ss_pred EEEeecchhHHHH----HHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADN----YEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~V----l~eI~p~Lk~GaiL~~a 211 (417)
||.+||....... +. ...++++.++.|+
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 9999997765531 22 3446667776643
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.03 Score=54.59 Aligned_cols=65 Identities=28% Similarity=0.323 Sum_probs=42.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHH------c--CceecCCCcCCHHhhhccCC
Q 014863 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~d~~~~~~~Eav~~AD 180 (417)
|+|||. |.+|..++..|... | .++.+.+....+....+.+ . ..... ..+|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999888 6 4676666543322111111 1 11210 1345578999999
Q ss_pred eEEEee
Q 014863 181 LVLLLI 186 (417)
Q Consensus 181 iViLav 186 (417)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=51.98 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.+
T Consensus 33 ~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 33 DLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVSA 86 (160)
T ss_dssp STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE-
T ss_pred CCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEeee
Confidence 5889 999999988 6999999999998 8887765432 12567788999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... ++ ...+|+|++|++++
T Consensus 87 ~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 87 VGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp SSSTT----B---GGGS-TTEEEEE--
T ss_pred eccccc---cc--cccccCCcEEEecC
Confidence 985332 22 24579999888775
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.044 Score=51.57 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeecc
Q 014863 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavpd 188 (417)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+...+.|......... ++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 9999888887533 334556677753222222 345689999999999993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.043 Score=51.96 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=60.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC---Cc---------------hhHHHHH---H-cC
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEAR---A-AG 161 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~---~~---------------~s~~~A~---~-~G 161 (417)
.+.|+. ++|+|||+|.+|..+|.+|... |+ ++++.++. .+ +....++ + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999998 87 46555443 00 0000000 0 00
Q ss_pred -ceec--CCCc--CCHHhhhccCCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEeccc
Q 014863 162 -FTEE--NGTL--GDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 162 -~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.... +..+ .+..+.++++|+||-|+-+.... .+++++...++.. .|+...|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~-~ii~~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDK-YLIAASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCC-cEEEEecc
Confidence 1100 0001 12345688999999995443444 3456777776554 34435554
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.041 Score=55.97 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=45.5
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--chhHHHHHHc-CceecCCCc-CCHHhhhc
Q 014863 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA-GFTEENGTL-GDIYETIS 177 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~--~~s~~~A~~~-G~~~~d~~~-~~~~Eav~ 177 (417)
|..++. +||+|||. |.+|.++|..|... +. ++++.+... ...++..... .+...+.+. .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 345666 99999999 99999999999866 43 566655521 1111211101 112101000 12267899
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
++|+|+++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998764
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=54.94 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc--CC----HHhhhcc
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~----~~Eav~~ 178 (417)
..++| |+|.|||-+ ..|..+|.-|.+. |..|.+.+.+............ +... .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~----hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIR----HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccc----cccccccchhhHHHHHhhh
Confidence 36899 999999966 7899999999888 8888877543211111000000 0001 12 6788999
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
||+||.+++..... +. ...+|+|++|++++-
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999965431 21 234689999998763
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.041 Score=60.26 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=58.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
.+|.|+|+|.+|..+++.|++. |+++++-+ .+.+..+.+++.|....-+...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 98876655 5566678888888654212222322 13679999999999
Q ss_pred chhHHH-HHHHHHh
Q 014863 188 DAAQAD-NYEKIFS 200 (417)
Q Consensus 188 d~a~~~-Vl~eI~p 200 (417)
+..... +...+..
T Consensus 474 d~~~n~~i~~~~r~ 487 (601)
T PRK03659 474 EPEDTMKIVELCQQ 487 (601)
T ss_pred CHHHHHHHHHHHHH
Confidence 977653 3333333
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.04 Score=59.48 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
..|-|+|+|.+|..+++.|++. |+++++.+. +++..+.+++.|.....+...+.+ .-++++|.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~-d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIET-SRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3699999999999999999999 998876654 455577777888654322222322 12579999999999
Q ss_pred chhHH
Q 014863 188 DAAQA 192 (417)
Q Consensus 188 d~a~~ 192 (417)
++...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.025 Score=57.91 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=50.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-eEEEEecCCchhHHHHHH---cCceecCCCcCC---HHhhhccCCeEEEe
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA---AGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G-~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~---~~Eav~~ADiViLa 185 (417)
|.|||.|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ ..+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999988 5 4 788888875543344332 122211001223 45688999999999
Q ss_pred ecchhHHHHHHH
Q 014863 186 ISDAAQADNYEK 197 (417)
Q Consensus 186 vpd~a~~~Vl~e 197 (417)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.019 Score=57.49 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 36789 999999999 9999999999888 8888776321 1245678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++..... +. ..++++|++|++++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9975433 22 23468999988765
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.069 Score=55.39 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=58.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--CceecCCCcCCHH----hhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~----Eav~~ADiViLa 185 (417)
++|.|||+|.+|..+++.|.+. |+++++.++. .+..+...+. ++....+...+.+ ..++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 9888776654 3334444432 3321111122222 246799999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++...--+...+...+.+..+++-+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 98764433333344445455555533
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.037 Score=56.62 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=50.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceec-----------CC---CcCCHHhhhcc
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~-----------d~---~~~~~~Eav~~ 178 (417)
|||+|+|.||..+++++... .+++++...+.+.+. ...|...|+... +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156766555543321 133433332110 00 03468889999
Q ss_pred CCeEEEeecchhHHHHH
Q 014863 179 SDLVLLLISDAAQADNY 195 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl 195 (417)
+|+|+.|+|...+..-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987765433
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.038 Score=52.15 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=54.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHHHHHHc----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (417)
.+.|+. +||.|||+|.+|..++++|... |+ ++.+.++.. .+....+...
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 367788 9999999999999999999998 87 555554331 1111111110
Q ss_pred -Cceec--CCCcC--CHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~~--d~~~~--~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
.+..+ +..+. +..+.++++|+||.++-.......+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11100 01111 23457889999999986655555665543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.033 Score=56.32 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=42.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHH----HcCceecCC-C-cCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEENG-T-LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~----~~G~~~~d~-~-~~~~~Eav~~ADiVi 183 (417)
+||+|||.|.+|.++|..|... |. ++++.+.+.......+. ...+..... . ..++++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999887 65 56666654332222222 121110000 1 245654 89999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.029 Score=56.05 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.+ ..|..+|.-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 36899 999999999 9999999999887 8777776542 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-. .++. ..++|+|++|+|++
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2332 12269999998775
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.028 Score=58.47 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++|.|||+|.+|.++|+.|++. |.+|++.++... ..... +... +......+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999999 988766664422 22111 1110 000123334457899999887644
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.041 Score=55.27 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=57.8
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.+. .|..++.-|... |..|.+.... ..++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 35789 9999999998 999999999888 8888776521 2356788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++--.. .+. ...+++|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 776322 222 23578999988765
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.021 Score=56.99 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCc---hhHHHHHHcCceec-CCCcCCH------Hhh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEE-NGTLGDI------YET 175 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~~-d~~~~~~------~Ea 175 (417)
.++| +++.|||.|-.+.|++..|... |. ++.+.+|..+ +..+.+...+.... .-.+.+. .+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3677 8999999999999999999887 86 7888888742 44444443321000 0001122 235
Q ss_pred hccCCeEEEeecchhH
Q 014863 176 ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 176 v~~ADiViLavpd~a~ 191 (417)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997654
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.03 Score=53.80 Aligned_cols=79 Identities=16% Similarity=0.026 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------hhHHHHHHcCceec-CC-CcCCHH
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE-NG-TLGDIY 173 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~-d~-~~~~~~ 173 (417)
..++| ++|+|.|+|+.|..+|+.|.+. |..++...+.+. +..+...+.+-... .. ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46789 9999999999999999999998 886655555544 44444444332210 00 001112
Q ss_pred hh-hccCCeEEEeecchhH
Q 014863 174 ET-ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 174 Ea-v~~ADiViLavpd~a~ 191 (417)
+. -.+||+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 1378888888776533
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.035 Score=50.71 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC-----------------
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~----------------- 167 (417)
+..+.. .+|.|+|.|+.|..-+.-+..- |.++++.+.. ....+.....+.....-
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 345555 8999999999999999988887 9988776654 33344444444432100
Q ss_pred -----CcCCHHhhhccCCeEEEe--ecchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 168 -----TLGDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 -----~~~~~~Eav~~ADiViLa--vpd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
......+.++.+|+||.. .|....+.++ ++....|++|.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 001245678999999963 3555666666 46777899999999774
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.094 Score=49.86 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| ++|.|||.|..|..-++.|.+. |.+|+|......+.+....+.| +....+.. . .+-+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEEC
Confidence 5889 9999999999999999999999 9888776654333333333333 33211111 2 3447899999999
Q ss_pred ecchhHH-HHHHHH
Q 014863 186 ISDAAQA-DNYEKI 198 (417)
Q Consensus 186 vpd~a~~-~Vl~eI 198 (417)
+.+.... .++...
T Consensus 77 t~d~~ln~~i~~~a 90 (205)
T TIGR01470 77 TDDEELNRRVAHAA 90 (205)
T ss_pred CCCHHHHHHHHHHH
Confidence 9987553 454443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.1 Score=53.10 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc------hhHHHHHHc-----CceecCCCcC
Q 014863 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLG 170 (417)
Q Consensus 110 g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~------~s~~~A~~~-----G~~~~d~~~~ 170 (417)
...||+|||. |.+|.++|..|... ++ ++++.+.... ..++..... .... ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~ 72 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TD 72 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ec
Confidence 3479999998 99999999988765 33 4555554221 112222111 1111 23
Q ss_pred CHHhhhccCCeEEEeec
Q 014863 171 DIYETISGSDLVLLLIS 187 (417)
Q Consensus 171 ~~~Eav~~ADiViLavp 187 (417)
+..+.+++||+||++--
T Consensus 73 ~~y~~~~daDiVVitaG 89 (326)
T PRK05442 73 DPNVAFKDADVALLVGA 89 (326)
T ss_pred ChHHHhCCCCEEEEeCC
Confidence 45578899999998764
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.037 Score=55.07 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCC---chhHHHHHHc---C--ceecCCCcC---CHHh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~d~~~~---~~~E 174 (417)
.++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+.+. + ......... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3567 8999999999999999999988 885 88888864 3333333321 1 110000011 2234
Q ss_pred hhccCCeEEEeecchhH
Q 014863 175 TISGSDLVLLLISDAAQ 191 (417)
Q Consensus 175 av~~ADiViLavpd~a~ 191 (417)
.++++|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56778999999997643
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.045 Score=55.61 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCch------hHHHHHHc-----CceecCCCcCCH
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~~------s~~~A~~~-----G~~~~d~~~~~~ 172 (417)
+||+|||. |.+|.++|..|... |+ ++.+.+..... .++..... .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999999876 54 45555543221 11111111 1111 1344
Q ss_pred HhhhccCCeEEEeec
Q 014863 173 YETISGSDLVLLLIS 187 (417)
Q Consensus 173 ~Eav~~ADiViLavp 187 (417)
.+.+++||+||++--
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 578899999999764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.11 Score=53.41 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=41.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----cCc----eecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~----~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.++|..|... ++ ++++.+.........+.+ ..+ ... ...+.+ .+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy~-~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDYA-VTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCHH-HhCCCCE
Confidence 5999999999999999999877 65 565555443322222221 111 110 012444 4899999
Q ss_pred EEEee
Q 014863 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 109 VVitA 113 (350)
T PLN02602 109 CIVTA 113 (350)
T ss_pred EEECC
Confidence 99984
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.046 Score=54.73 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..+..+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEEe
Confidence 6889 999999988 8999999999888 8777765321 12566789999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++++|++|++++
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEee
Confidence 975432 22 24578999988764
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.074 Score=53.55 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=42.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--chhHHHHH-------HcCc--eecCCCcCCHHhhhc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~--~~~d~~~~~~~Eav~ 177 (417)
+||+|||. |..|..++..|... |+ +|++.++.. .+....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999888 76 466666632 11111110 1111 11 0 0124 45699
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.38 Score=48.92 Aligned_cols=157 Identities=12% Similarity=0.040 Sum_probs=93.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
.||+||| .|-.|.-+.+-|.+. ..+++.. ...... +. ..+.+++++++|+||+|+|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~-l~s~~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLS-IAPDRR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEE-Eecccc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4899999 789999999888765 1234322 222111 22 1345667789999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
..++.+.+. ..|..|+|.++- + .+ +-+++-+.|.-... .|+..+. .. +|+ ...+.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad----f-----Rl--~~~~~yglPEln~~-~~~~i~~--------a~-lIA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA----Y-----RT--ADDWAYGFPELAPG-QREKIRN--------SK-RIA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH----H-----hC--CCCCeEEccccCHH-HHHhhcc--------CC-EEE-CCCCH
Confidence 888777653 367788887763 1 11 11677778855432 2222222 22 344 55566
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHH
Q 014863 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 271 gea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~ 321 (417)
..+..+++.=+...|.. +......+.+.+..+|++-..++.+.
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhh
Confidence 66666665555555532 11112345566677778777666544
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.09 Score=57.88 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
++|-|+|+|.+|..+++.|++. |+++++- +.+.+..+.+++.|.....+...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6799999999999999999998 9887665 45566677778888754322222332 23569999999999
Q ss_pred chhHHH
Q 014863 188 DAAQAD 193 (417)
Q Consensus 188 d~a~~~ 193 (417)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876653
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.052 Score=57.08 Aligned_cols=71 Identities=21% Similarity=0.125 Sum_probs=50.3
Q ss_pred cccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
+..++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45667 89999999999999 89999999 99987766543333333455677641 1223455678999887
Q ss_pred ee
Q 014863 185 LI 186 (417)
Q Consensus 185 av 186 (417)
.-
T Consensus 73 sp 74 (461)
T PRK00421 73 SS 74 (461)
T ss_pred CC
Confidence 53
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.075 Score=54.54 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec---
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp--- 187 (417)
.||||||+ .+|..++..+++. ..+.+++.. ++..+++.+.|.+.|+.. ..+.+|++.+.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 58999999 5799999999876 003455433 444456667888888763 6799999988888888875
Q ss_pred -chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 -DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 -d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45676766553 45666554
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.06 Score=54.10 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++++.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5889 999999955 7899999999887 7777765432 23567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDVG 227 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985432 22 34578999988764
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=52.82 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=57.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------chhH---HHHHH
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (417)
.+.|++ ++|.|||+|..|..+|.+|... |+ ++.+.++.. .+.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 578888 9999999999999999999998 87 555555431 0111 11111
Q ss_pred --cCceec----CCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHh
Q 014863 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 160 --~G~~~~----d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p 200 (417)
.++..+ +-+..+.++.++++|+||.++-+....-++.++.-
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~ 138 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ 138 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 122110 10112356788999999999976665556666543
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.064 Score=54.10 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=57.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999965 7899999999888 8887766322 13567888999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++|+|++|++++
T Consensus 209 vGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 209 AGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEec
Confidence 98543 232 24578999988765
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.048 Score=52.74 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56788 9999999999999999999998 98876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=51.48 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=42.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc--hhHHHHHH----c-----CceecCCCcCCH
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA----A-----GFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~--~s~~~A~~----~-----G~~~~d~~~~~~ 172 (417)
.||+|||. |.+|.++|..|... ++ ++++.+.... .....+.+ . ++.. ..+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 73 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA----TTDP 73 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE----ecCh
Confidence 58999998 99999999999877 54 5655554321 12222221 1 1111 1345
Q ss_pred HhhhccCCeEEEeec
Q 014863 173 YETISGSDLVLLLIS 187 (417)
Q Consensus 173 ~Eav~~ADiViLavp 187 (417)
.+.+++||+||++--
T Consensus 74 ~~~~~daDvVVitAG 88 (323)
T TIGR01759 74 EEAFKDVDAALLVGA 88 (323)
T ss_pred HHHhCCCCEEEEeCC
Confidence 678899999998763
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.14 Score=52.67 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=57.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh-ccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-SGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav-~~ADiViLa 185 (417)
-.| ++|+|+|.|-.|..-.|-++.. |.+|+...++ .+..+.|++.|.... +....+..+.+ +.+|+|+..
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999997777766666666 8888776665 445788888886431 11111122333 239999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++.. ++.-.+.|+++-+++.+
T Consensus 237 v~~~~----~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VGPAT----LEPSLKALRRGGTLVLV 258 (339)
T ss_pred CChhh----HHHHHHHHhcCCEEEEE
Confidence 99332 22333445666555533
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.088 Score=52.84 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... ..+..+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999966 7899999999888 8777765321 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985432 22 24578999988764
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.072 Score=54.33 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hh-hhcCCceEEEE-ecC---------Cchh-HHHHHHcCceec-C--CCcCCHH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVG-LRK---------GSRS-FAEARAAGFTEE-N--GTLGDIY 173 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s---~~-~~~~G~~Vivg-~r~---------~~~s-~~~A~~~G~~~~-d--~~~~~~~ 173 (417)
.+|+|||+|+||..+++.|++. +. ..|.+++|+.. +++ +... .+.+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998764 10 11223454332 321 1111 122222332110 0 0023677
Q ss_pred hhh--ccCCeEEEeecchhHH-HH-HHHHHhcCCCCcEEEE
Q 014863 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (417)
Q Consensus 174 Eav--~~ADiViLavpd~a~~-~V-l~eI~p~Lk~GaiL~~ 210 (417)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986652 22 2233455667776653
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.087 Score=52.71 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=42.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--Ccee-cCC--C-cCCHHhhhccCCeEEEe
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--T-LGDIYETISGSDLVLLL 185 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~d~--~-~~~~~Eav~~ADiViLa 185 (417)
|+|||.|.+|.++|..|... |+ ++++.+...++....+.+. .... ... . ..+ .+.+++||+||++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 68999999999999999888 74 5666665443322222210 0000 000 0 123 4688999999998
Q ss_pred ec
Q 014863 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
..
T Consensus 74 ag 75 (300)
T cd00300 74 AG 75 (300)
T ss_pred CC
Confidence 86
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.091 Score=52.66 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+...+ ..++++.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999965 7899999999888 8877765432 13567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEee
Confidence 985433 22 23578999988765
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.076 Score=53.26 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+...+ ..++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999965 7899999999988 8877765422 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 34578999988764
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.093 Score=52.51 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999965 7899999999888 8888776431 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEee
Confidence 985433 22 23478999988863
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.1 Score=44.18 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.8
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEEeecchhHHH-HHH
Q 014863 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE 196 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~-Vl~ 196 (417)
+-+..++..|++. |.+|.+.+..-.. ..... ..++.. +.+.+++++++|.||++++-....+ -++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~ 85 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWE 85 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHH
Confidence 5667788888888 9988776544322 22222 246664 5688999999999999999888876 466
Q ss_pred HHHhcCCCCcEEEEeccc
Q 014863 197 KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 197 eI~p~Lk~GaiL~~a~G~ 214 (417)
++...|+++.+|++.-++
T Consensus 86 ~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 86 EIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHSCSSEEEEESSST
T ss_pred HHHHhcCCCCEEEECccc
Confidence 788888888899988764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.071 Score=53.85 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.+.++.+++||+|+.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999966 7899999999888 8888776431 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-. .++. ..++|+|++|++++
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEee
Confidence 9753 2332 24578999988764
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.081 Score=52.99 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|.| +++.|||-+ ..|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 46889 999999988 5699999999988 8888776542 1256678899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++--..... .+.+|+|++|++++
T Consensus 206 AvG~p~~i~-----~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHFIK-----ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccccc-----cccccCCCEEEecC
Confidence 997433222 46689999988775
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.1 Score=52.43 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999888 8877765432 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++|+|++|+|++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98432 222 24578999988764
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.11 Score=52.11 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=57.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|+| |+|.|||-+ ..|..++.-|... +..|.+.... ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 36889 999999965 7899999999888 8887765432 1256677899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++++|++|++++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985433 22 24578999988764
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.071 Score=56.13 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=50.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch----hHHHHHHcCceecCCCcCCHHhhhccCC
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
.+.+.+ ++|+|+|+|..|.++|+-|++. |++|.+.++.... ..+...+.|+.... -....+.+.++|
T Consensus 9 ~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d 79 (458)
T PRK01710 9 KKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFD 79 (458)
T ss_pred hhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCC
Confidence 356778 9999999999999999999999 9988877654321 12345566875410 012245568899
Q ss_pred eEEEe
Q 014863 181 LVLLL 185 (417)
Q Consensus 181 iViLa 185 (417)
+||+.
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99886
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.34 Score=51.52 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=42.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCc--eEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHHhhhcc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI--VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~Eav~~ 178 (417)
-||+|||. |++|.++|-.|... +-+...++ ++++.+...+.....+.+ ++ +.. ..+..+.+++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i----~~~~ye~~kd 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI----GIDPYEVFQD 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE----ecCCHHHhCc
Confidence 58999999 99999999988654 00000022 455555444433322221 11 111 1244578899
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
||+||+.--
T Consensus 177 aDiVVitAG 185 (444)
T PLN00112 177 AEWALLIGA 185 (444)
T ss_pred CCEEEECCC
Confidence 999999764
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.095 Score=52.59 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|... +..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 5889 999999955 8899999999887 8777765421 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++++|++|++++
T Consensus 209 vG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 209 VGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred cCCCC---cCC--HHHcCCCCEEEEee
Confidence 97543 232 23468999998875
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.1 Score=52.96 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=42.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCceEEEEecCCchhHHHHHHcCcee------cC-CCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~------~d-~~~~~~~Eav~~ADiV 182 (417)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+...-+.. .+ ....+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 0000002367666654321111111111110 00 0024556889999999
Q ss_pred EEee
Q 014863 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.22 Score=49.83 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=54.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---------cCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---------~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|||.|.+-.+...-.+.. +.+.. +.+.+.++...+.+++ .+.........+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987755444333 11233 3456666655555432 11111000011222235688999
Q ss_pred EEeecch----hHHHHHHHHHhcCCCCcEEE--Eeccchhhhhhc-cccCCCCCCcE-EEeccCCc
Q 014863 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFLLGHLQS-MGLDFPKNIGV-IAVCPKGM 240 (417)
Q Consensus 183 iLavpd~----a~~~Vl~eI~p~Lk~GaiL~--~a~G~~i~~~~~-~~i~~~~di~V-I~v~Pn~p 240 (417)
+++.-.. .=.++++.+..+|++|+.|+ ..+|..--.+-. ..-.+ .+.++ ..+||.++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l-~gf~~~~~~hP~~~ 261 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDL-RGFEVLAVVHPTDE 261 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGG-TTEEEEEEE---TT
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHC-CCeEEEEEECCCCC
Confidence 9998776 44579999999999999876 677764211100 00011 14444 68899643
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.078 Score=53.51 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=42.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----cCcee-cC--CCcCCHHhhhccCCeEE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTE-EN--GTLGDIYETISGSDLVL 183 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~-~d--~~~~~~~Eav~~ADiVi 183 (417)
||+|||.|.+|.++|..|... ++ ++++.+.........+.+ .-+.. .+ -...+ .+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 799999999999999999887 65 566665543322222222 11110 00 01223 46789999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.12 Score=51.87 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=57.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999887 7777765432 13577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 23578999988764
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.086 Score=55.91 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC-CHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~-~~~Eav~~ADiViL 184 (417)
..+.+ ++|.|+|+|-.|.++|+-|++. |.+|.+.++......+...+.|+... .. ...+-+.++|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 45667 9999999999999999999999 99887766543332233455677541 11 23345678999887
Q ss_pred e
Q 014863 185 L 185 (417)
Q Consensus 185 a 185 (417)
.
T Consensus 81 S 81 (473)
T PRK00141 81 S 81 (473)
T ss_pred C
Confidence 5
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.24 Score=50.38 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=41.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--cCceec--CCC-cC-CHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGT-LG-DIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~--d~~-~~-~~~Eav~~ADiViLa 185 (417)
+||+|||.|.+|.+.|..|... +.+.++++.+.......-.+.+ ++.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999665 1233566666552222222221 010000 000 11 125678999999998
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.74 Score=46.86 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=89.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
.||+||| .|..|..+.+-|.+. . +++.....+..+ .. . +.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~~~~-------~~-~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEAKRK-------DA-A-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecCCCC-------cc-c-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999988765 3 243322222111 11 1 2345567899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
...++.+++. +.|..|+|.++- + .+ +-+++.+.|.-... .|+..+. .. +|+ ..++
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSad----f-----Rl--~~~~~yglPEvn~~-~~~~i~~--------~~-~Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALID---NPATRVIDASTA----H-----RT--APGWVYGFPELAPG-QRERIAA--------AK-RVA-NPGC 116 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECChh----h-----hc--CCCCeEEcCccCHH-HHHHhhc--------CC-eEE-cCCc
Confidence 8888887764 358888877763 1 11 11677777854322 2333332 22 244 5556
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea 319 (417)
...+.-+++.=+..-|.. ++.....+...+..+|++-..++.
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~ 158 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAA 158 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHH
Confidence 666665555544444432 121123455556667777665444
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.12 Score=52.02 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999888 8777765432 13567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 23468999988763
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.087 Score=54.07 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..++| ++|.|||.|-||.-.+++|++. |. ++++.+|+... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 35788 9999999999999999999999 86 68888887421 111100 0011133468999999
Q ss_pred ee
Q 014863 185 LI 186 (417)
Q Consensus 185 av 186 (417)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.08 Score=55.88 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCceEEEEecCCchhHHHH--------HHcCc--eecCCCcCCHHhhhcc
Q 014863 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGF--TEENGTLGDIYETISG 178 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A--------~~~G~--~~~d~~~~~~~Eav~~ 178 (417)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+.. .+..+.+ ...+. .. ..++|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDID-PERLEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 579999999999977665 65422 00114466665543 3322211 11221 11 114567899999
Q ss_pred CCeEEEeecch
Q 014863 179 SDLVLLLISDA 189 (417)
Q Consensus 179 ADiViLavpd~ 189 (417)
||+||.++-..
T Consensus 76 ADfVv~ti~vg 86 (431)
T PRK15076 76 ADYVINAIQVG 86 (431)
T ss_pred CCEEeEeeeeC
Confidence 99999998764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.34 Score=48.60 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=62.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC--CchhHHHHHHcCceecCCCcCCHHh--hhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~~E--av~~ADiVi 183 (417)
..| .+|.|+|.|.+|...++.++.. |.+|++..+. +.+..+.+++.|....+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 367 8999999999999999999888 8887766653 3456778888887631111111111 224579999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-++.... .+.+....++++..++..
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 9997432 444555667777766544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.14 Score=51.26 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=56.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5789 999999966 7899999999887 7777765321 23567888999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-. .++. ..++|+|++|++++
T Consensus 208 vGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 208 IGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred cCCc---CccC--HHHcCCCCEEEEee
Confidence 9842 2332 24578999988764
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.19 Score=51.25 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcC-CHH----hhh--ccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~-~~~----Eav--~~ADiVi 183 (417)
.++.|+|.|.+|.-.++.++.. |...++..+.++..++.|++ .|......... +.. +.- ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888887 86444444555667889988 55442100001 111 122 3599999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-|+- ....+.+....++++-.|++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334566666777787766544
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.12 Score=53.49 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+...+ ..++.+.+++||+||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999955 7899999999888 7777765321 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|+|++
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEecc
Confidence 985432 22 24578999988764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.12 Score=54.50 Aligned_cols=70 Identities=27% Similarity=0.183 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
.+++ ++|.|||.|..|.+.|..|++. |.+|.+.++.+. ...+..++.|+... .....+....+|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 3567 8999999999999999999998 999887765432 11234556687642 11212234579999
Q ss_pred EEee
Q 014863 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|+++
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9886
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.15 Score=51.19 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=56.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh--hhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~--s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++++.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 5789 999999955 889999999976 5 6667665431 236778899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.++.-.. ++. ..++|+|++|++++
T Consensus 209 ~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 209 AAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 9998543 222 24578999988764
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.14 Score=52.70 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=56.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..+|.-|.+. +..|.+.... ..+.++.+++||+||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999965 7899999999887 7777665432 12567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|+|++
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985433 22 23578999988764
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.17 Score=52.76 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=49.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH----HHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
+++ ++|.|||.|.+|.++|+.|.+. |++|.+.++.....+ +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999888776542222 222334554210 112234567899999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9875
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.095 Score=52.32 Aligned_cols=77 Identities=22% Similarity=0.126 Sum_probs=52.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC--ceecCCCcCC---HHhhhccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGD---IYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G--~~~~d~~~~~---~~Eav~~AD 180 (417)
.+++ +++.|||.|-.|.|++-.|.+. |. ++.+.+|..++..+.+.... +........+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 4567 8999999999999999999988 87 67788887665555554321 1000000112 233567899
Q ss_pred eEEEeecchh
Q 014863 181 LVLLLISDAA 190 (417)
Q Consensus 181 iViLavpd~a 190 (417)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999999543
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.22 Score=50.29 Aligned_cols=118 Identities=8% Similarity=0.137 Sum_probs=78.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.||.|.| .|--|..+-..+... |-+++.|.....- ..+-.|... ..++.|+... .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 799999999999998 9898888766420 011246664 5688887765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
....+.+++.... .-..+|++++||...-.++.....-..-.+-.+=||+.|-.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 9999999886542 22347789999963311110001111223444567776554
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.13 Score=51.77 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|.|||-+ ..|..++.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 35889 999999965 78999999887610000 5566654422 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-. .++. ..++|+|++|++++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99644 3332 23458999988765
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.35 Score=44.08 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.6
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----c--hhH----HHHHHcCc--eecCCCcCCHHh
Q 014863 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (417)
Q Consensus 109 ~g~kkIgIIG--~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~--~s~----~~A~~~G~--~~~d~~~~~~~E 174 (417)
+| +||++|| .+++..|++..+... |.++.+....+ . .-+ +.+.+.|. .. ..+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 489999999999988 99876655443 1 122 22333443 32 468999
Q ss_pred hhccCCeEEEeecc
Q 014863 175 TISGSDLVLLLISD 188 (417)
Q Consensus 175 av~~ADiViLavpd 188 (417)
+++++|+|+.-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999998877655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.14 Score=51.99 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCC--chhH----HHHHH-----cCceecCCCcCCHH
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARA-----AGFTEENGTLGDIY 173 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~--~~s~----~~A~~-----~G~~~~d~~~~~~~ 173 (417)
||+|||. |.+|.+++..|... ++ ++++.+... +... +.... .+... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355555543 2111 11110 01111 13566
Q ss_pred hhhccCCeEEEee
Q 014863 174 ETISGSDLVLLLI 186 (417)
Q Consensus 174 Eav~~ADiViLav 186 (417)
+.+++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999875
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.13 Score=52.31 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCchhHHHHHHcCceec-----CC--CcCCHHhhhc
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~-----d~--~~~~~~Eav~ 177 (417)
||+|||. |.+|.++|..|... ++ ++++.++........+...-.... .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 355555432211111111101000 00 0124467899
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
+||+||++--
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999998764
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.13 Score=54.16 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=50.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh----hhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~----~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViL 184 (417)
.+|||||+|.+|..+++.|.+..+ ..|.++++.. .+++..+ .......+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 589999999999999988865411 1222344432 3333211 1111011112 1457888885 5799999
Q ss_pred eecch-hHHHHHHHHHhcCCCCcEEEE
Q 014863 185 LISDA-AQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 185 avpd~-a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
++++. .+.++. ...|+.|+.|+.
T Consensus 79 ~tg~~~~~~~~~---~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELI---LKALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHH---HHHHHCCCeEEE
Confidence 98753 333333 344566765543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.19 Score=47.91 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavp 187 (417)
|||+||| .|..|..+++-..+. |++|....|+.++... . .+.......+. ...+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~--~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA--R-QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc--c-ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 799999999999999 9999888887554322 1 23322122222 33467889999999875
Q ss_pred ch------hHHHHHHHHHhcCCC-CcE-EEEeccch
Q 014863 188 DA------AQADNYEKIFSCMKP-NSI-LGLSHGFL 215 (417)
Q Consensus 188 d~------a~~~Vl~eI~p~Lk~-Gai-L~~a~G~~ 215 (417)
.. .+.+..+.+...++. |.. +.+++|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 222333345555544 432 56677753
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.2 Score=47.28 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. +||.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 477888 9999999999999999999998 87 444444
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.16 Score=48.71 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. ++|.|||+|..|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 367788 9999999999999999999998
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.13 Score=51.72 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=55.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~----s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++.+.+++||+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~ADI 207 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREADF 207 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCCE
Confidence 5889 999999965 789999999987 4 5666665422 1257788999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
||.++.-.. ++. ..++++|++|++++
T Consensus 208 VI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 208 LFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 999996433 232 13458999988765
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=2.3 Score=43.43 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh----hhcCCceEE-EEecCCc---------hhH-HHHHHcCceec--C--C-CcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~----~~~~G~~Vi-vg~r~~~---------~s~-~~A~~~G~~~~--d--~-~~~~ 171 (417)
.+|+|+|+|+.|..+++.|.+.-+ ..|..++|+ +.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998877311 122224433 2232210 111 11112121100 0 0 0115
Q ss_pred HHhhh--ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 172 ~~Eav--~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.+|.+ .++|+||=++++....+++.++ ++.|..|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 5799999999877666666554 44566554
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.33 Score=49.94 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccC--CeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~A--DiViLavpd 188 (417)
-++||+|+|.|+.=.+++|.-. +++ ++.|+ +..+..+.+.+.|+..++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s--~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PES--NHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-ccc--CcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998654 111 55543 34454556778888888831 23467999999876 999999999
Q ss_pred hhHHHHHHHHHh
Q 014863 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~a~~~Vl~eI~p 200 (417)
.+|.++.-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999988765443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.38 Score=51.54 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=66.5
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-----ceec------
Q 014863 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEE------ 165 (417)
Q Consensus 107 ~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~~------ 165 (417)
.++| +||+|+|+ .+-...++..|.+. |.+|.+++..-. ..+.....+ +...
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVT-EEQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCC-hHHHHHHhhccccccccccccccc
Confidence 4788 99999998 56777888888888 998877654321 111111121 1000
Q ss_pred -------CCCcCCHHhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 166 -------NGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 166 -------d~~~~~~~Eav~~ADiViLavpd~a~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
-..+.+..+++++||+|++++.-....++ ++.+.+.|++..+|+|.-++
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 00134567899999999999998877653 56677778765578887665
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.19 Score=50.68 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+...+ ..++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCCE
Confidence 5889 999999966 7899999999765 4 356554322 1356788899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
||.++.-... +. ..++|+|++|++++
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9999985433 22 24578999988764
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.57 Score=45.47 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=61.9
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceecCCCcC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~ 170 (417)
.++-+....|+.. -.++| ++|.|||.|.+|..=+..|.+. |.+|.|....-.+.+ +.+....+....+. .
T Consensus 8 ~~~~~~~~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~-~ 78 (223)
T PRK05562 8 DIYNEENKYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGN-Y 78 (223)
T ss_pred HHhhccCCEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-C
Confidence 3333334455544 46778 8999999999999999999998 887777654433333 33332223321111 2
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
+.. -+.++++||.||.|...-+-+.+..
T Consensus 79 ~~~-dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DKE-FIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred ChH-HhCCCcEEEECCCCHHHHHHHHHHH
Confidence 223 3678999999999988765444443
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.17 Score=53.16 Aligned_cols=66 Identities=29% Similarity=0.281 Sum_probs=46.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++.... .....+.|+... ..+ .+-+.++|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 3678 9999999999999999999998 9988766644322 223445677531 112 234578998886
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.14 Score=55.30 Aligned_cols=76 Identities=25% Similarity=0.192 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLa 185 (417)
.+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+...+.... ...+..+. ...+|+|+.+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEec
Confidence 3667 8999999999999999999998 88888888765555555544432110 01222222 2357888888
Q ss_pred ecchhH
Q 014863 186 ISDAAQ 191 (417)
Q Consensus 186 vpd~a~ 191 (417)
+|....
T Consensus 447 T~vGm~ 452 (529)
T PLN02520 447 TSVGMQ 452 (529)
T ss_pred ccCCCC
Confidence 887653
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.18 Score=52.40 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecC-CCcCCHH-hhhccCCeEEEee
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d-~~~~~~~-Eav~~ADiViLav 186 (417)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999995 89999999887665 1345554443211 1111110 0000000 0011222 2258899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|.....++.+.+ +.|..|++.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666553 457778877663
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.37 Score=49.36 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=56.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------chhHH---HHHH
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~---------------------~~s~~---~A~~ 159 (417)
.+.|+. .||.|||+|-+|..+|++|... |+ ++.+.++.. .+... ...+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467888 9999999999999999999998 77 566655431 11111 1111
Q ss_pred --cCceec--CCC--cCCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 --AGFTEE--NGT--LGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 --~G~~~~--d~~--~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+... ... ..+..+.++++|+||.++-+.....++.++.
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 111110 001 1234567899999999988777666666544
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.27 Score=49.66 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=52.4
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| .||++||-| ++..|++..+... |++|.+...++- .-.+.+++.|.... ...++++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999985 9999999999887 998877654421 22456666665421 146899999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.43 Score=45.81 Aligned_cols=81 Identities=17% Similarity=0.036 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- ++-.....+.++...+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 56889 9999999999999999999998 88887766554 3333344444422111 123444444 4999999
Q ss_pred eecchhHHHHH
Q 014863 185 LISDAAQADNY 195 (417)
Q Consensus 185 avpd~a~~~Vl 195 (417)
+|.|....+-+
T Consensus 79 At~d~~ln~~i 89 (210)
T COG1648 79 ATDDEELNERI 89 (210)
T ss_pred eCCCHHHHHHH
Confidence 99998876533
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.19 Score=51.49 Aligned_cols=90 Identities=21% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc---hhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~---~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|+||+||| .|..|..+.+-|.++ ++ ..+....... +...... ...... -.+..+ ++++|+||+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~-~~l~~~---~~~~~~-~~~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAG-KNLRVR---EVDSFD-FSQVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCC-cceEEe---eCChHH-hcCCCEEEE
Confidence 36899999 599999999999875 44 1112222211 1111100 011110 012233 578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|.....++.+++.. .|..++|.+|-
T Consensus 73 a~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 73 AAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred cCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 9998766666655533 57778877763
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.32 Score=45.91 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467788 9999999999999999999998 87 354444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.23 Score=50.48 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCc--hhHHHHHHcCceecCCCcCCHH-hhhccCCeEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVL 183 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~-Eav~~ADiVi 183 (417)
|+||+||| .|..|..+.+-|.+. ++ ++....+..+ +... -.|... .+.+.. +.++++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEE
Confidence 37999999 789999999999886 55 3333333221 2111 112111 022221 3457899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|+|.....++.+.+. +.|..|++.++
T Consensus 69 ~A~g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 69 FSAGGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred ECCChHHHHHHHHHHH---hCCCEEEECCc
Confidence 9999988888777653 45777777665
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.52 Score=45.78 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=57.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCcCCHHhhh------ccCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav------~~ADi 181 (417)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|....-. ..+..+.+ ...|+
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCE
Confidence 67 8999999999999999988888 886 5544 44455678888888742100 01111211 24799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+-++.... .+++....++++..++..
T Consensus 191 vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 988875322 333444556666655544
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.3 Score=49.50 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=42.2
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--chhHHHHHHcC-ceecCCCcC-CHHhhhccCCeEEEe
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~d~~~~-~~~Eav~~ADiViLa 185 (417)
||+|||. |++|.++|..|... ++ ++++.+... ...++...... ......+.. +..+++++||+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 7999999 99999999999877 65 565555432 12222221111 111000001 236789999999988
Q ss_pred ecc
Q 014863 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
.-.
T Consensus 75 aG~ 77 (312)
T TIGR01772 75 AGV 77 (312)
T ss_pred CCC
Confidence 753
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.39 Score=47.45 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
+| +++.|+|.|.+|...++-++.. |.++++..+.+...++.|.+.++.. ..++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 8899999999999999888887 8875555555455556665554331 111122468999999886
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 014863 189 AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.. .++...+.++++-.+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566666665544
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.15 Score=52.65 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=52.7
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce---e-cCC----C------c--CCHH-
Q 014863 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG----T------L--GDIY- 173 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~---~-~d~----~------~--~~~~- 173 (417)
|||.++|.|+||+++ +.-|.++ |++|++.+.. +...+...+.|.- . .+. . + .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999976 6666666 8887666543 3344444455631 1 011 0 1 0112
Q ss_pred --hhhccCCeEEEeecchhHHHHHHHHHhcC
Q 014863 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (417)
Q Consensus 174 --Eav~~ADiViLavpd~a~~~Vl~eI~p~L 202 (417)
+.+..+|+|++++++.....+...+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999887766666665555
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.22 Score=53.06 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++. ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 9988876644 3334445667875410 11234567789998886
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 5
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.24 Score=50.80 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---eEEE-E-ecCCchhHHHHHHcCceecCCCcCC-HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Viv-g-~r~~~~s~~~A~~~G~~~~d~~~~~-~~Eav~~ADiViL 184 (417)
.||+||| .|..|..+.+-|.++ ++ ++.+ . .+...+.... .|... .+.+ ..+.+.++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 789999999888876 54 2222 2 2222222211 12111 0111 1245689999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|.....++.+++. +.|..|+|.++-
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999997777777653 368888888763
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.72 Score=46.12 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=60.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc---cCCeE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~---~ADiV 182 (417)
.+| ++|.|+|.|.+|...++-++.. |. +|++..+. .+..+.+++.|.... +..-.+..+... ..|+|
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEE
Confidence 357 8999999999999999988888 87 45555444 456788888887421 100112233222 37999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+-++.... .++.....+++|-.++..
T Consensus 240 id~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 240 FEVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 99987532 334444556777666544
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.073 Score=48.13 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+..+| +||++||+ +.+ ++..|+.. +.++.+.++.... ... ...++. ....++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 323 67777766 7788888776322 111 112232 35678999999998865
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-. ...-..++.|..+.++++.+++.
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEEEEE
T ss_pred ee-eeecCCHHHHHHhCccCCeEEEE
Confidence 32 22234555666666656655433
|
; PDB: 3L5O_B 3NPG_A. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.48 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s 133 (417)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.48 Score=47.86 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchh----HHHHHHc-CceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s----~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
|||+|||. |.+|.+++..|...+ +.+.++.+.++. +.. ++..... -.........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 69999999 999999999885521 113355555554 222 1211100 0111000013556788999999998
Q ss_pred ec
Q 014863 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 75
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.31 Score=49.65 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=54.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCch-hHHHHHHcC------ce--ecCCCcCC-HHhhhccC
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR-SFAEARAAG------FT--EENGTLGD-IYETISGS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~-s~~~A~~~G------~~--~~d~~~~~-~~Eav~~A 179 (417)
+||+|+|+ |-||..+++.|.+. . +++....+.... ......... .. ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 48999995 99999999988765 4 455444333211 011111111 10 00000111 22355889
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988887765533 57777777663
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.29 Score=50.89 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=47.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc---hhHHHHHHcCceecCCCcCCHHhhhcc-CCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~---~s~~~A~~~G~~~~d~~~~~~~Eav~~-ADiVi 183 (417)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+.... -....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVIC--GSHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEe--CCCCHHHhcCcCCEEE
Confidence 467 9999999999999999999999 999887765422 222334455765310 0123344444 89888
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 754
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.22 Score=50.73 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--hhHHHHHHcCc-eecC-CCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~-~~~d-~~~~~~~Eav~~ADiViL 184 (417)
.||+|||. |++|.++|..|... ++ ++++.+.... ..++....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 54 5655554331 11221111111 1101 012345789999999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 864
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.61 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
||+|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 77 4555544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.24 Score=50.19 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=42.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecC--CchhHHHHHHcC-ceecCC-CcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~--~~~s~~~A~~~G-~~~~d~-~~~~~~Eav~~ADiViL 184 (417)
+||+|||. |++|.++|..|... ++ ++++.+.+ ....++...... ...... ...++.+.+++||+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 55554433 122233222211 111000 01223578999999998
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.89 Score=47.28 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=89.9
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCc---eEEEEecCCchhHHHHHHcCceecCCCcCCH-H-hhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr-~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~-Eav~~ADiViL 184 (417)
++|||||+ |..|..+.+.|. +. .+ +++..... ++..+- ..|......+.+. + +..++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999996 999999999887 44 33 22222211 111111 1110000012222 2 35788999999
Q ss_pred eecchhHHHHHHHHHhcCCCC--cEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEE
Q 014863 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~G--aiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
+.+.....++.+... +.| .+|++.++.- . -+-+|-.+-|---......... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~----R-------md~dVPLVVPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASSL----R-------MKDDAVIILDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChhh----h-------cCCCCCEEeCCcCHHHHHhHHh-------CCcCe-
Confidence 999886666665544 467 6788877641 1 1124444556444443332112 24432
Q ss_pred EeecCCCCHHHHHHHH-HHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 263 iav~qd~sgea~e~a~-al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
|+ ..+++--..-.++ .|....|-.+++-+|+.. ++|++...++-+.+...
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQMG 179 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHHH
Confidence 33 4566655444444 344445555555554322 67777776666655544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.89 Score=45.99 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----cCceec-CCCcCCHHhh---hccC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEE-NGTLGDIYET---ISGS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~-d~~~~~~~Ea---v~~A 179 (417)
.. ++|..||+|..|.+-..-++..+. +- .+++.+.++...+.|++ .|+... .-...+..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 45 899999999987755444433310 11 35677777766665554 222100 0001222222 3688
Q ss_pred CeEEEeec----chhHHHHHHHHHhcCCCCcEEEE--eccc
Q 014863 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (417)
Q Consensus 180 DiViLavp----d~a~~~Vl~eI~p~Lk~GaiL~~--a~G~ 214 (417)
|+|++.+= .....++++.+..+|+||.++++ +||.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999952 24556899999999999998764 4554
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.29 Score=52.02 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=48.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHc--CceecCCCcC-CHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~d~~~~-~~~Eav~~ADiVi 183 (417)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 456 8999999999999999999999 998876664322 222333344 43321 12 2345677899999
Q ss_pred Ee--ecc
Q 014863 184 LL--ISD 188 (417)
Q Consensus 184 La--vpd 188 (417)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 86 455
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.26 Score=48.99 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+++.|||.|-.+.|++..|.+. |. +|.+.+|..++..+.+...+.. ..+ .-....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 87 5888899876666666554432 111 001256899999999654
Q ss_pred H
Q 014863 191 Q 191 (417)
Q Consensus 191 ~ 191 (417)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.61 Score=48.08 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhh-hccCCeEEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYET-ISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Ea-v~~ADiViL 184 (417)
|+||+||| -|--|.-+.+-|... ..+++.+...+..+-..... -.|.....-...+.++. ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 58999999 677777777766554 13354443322111001111 01221000001233443 445899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+|+..-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999998888877643 4555887765
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.39 Score=48.65 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.4
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHH----HHcC--ceecCCCcCCHHhhh
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A----~~~G--~~~~d~~~~~~~Eav 176 (417)
|+| +||++||=| ||+.|+...-..- |+++.+.... ++.-++.| .+.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999966 7888888777766 9988876543 33333444 3345 333 46899999
Q ss_pred ccCCeEEEeecchhH--HHHHHHHHhcCC
Q 014863 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (417)
Q Consensus 177 ~~ADiViLavpd~a~--~~Vl~eI~p~Lk 203 (417)
++||+|.-=|....- .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999876653322 223444444443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.75 Score=40.40 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
||.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 455543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.68 Score=46.28 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLavp 187 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. .+..+.+++.|... +.+. ++.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999888877777 8887665554 44578999999753 2221 111235788887766
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEe
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.. +.+......++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666778777766544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.43 Score=46.53 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. +||.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 578888 9999999999999999999998
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.6 Score=45.52 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhhhhhhcCCce---EEEEecCCchhHHHHHHc-CceecCCCcCC--HHhhhccCCeE
Q 014863 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGD--IYETISGSDLV 182 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~-~Lr~s~~~~~~G~~---Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~--~~Eav~~ADiV 182 (417)
|++|||||. |..|.-+.+ -|... .+. +.. ..+. ++-..-... |-.. .+.+ ..+.++++|+|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~~~f~g~~~---~v~~~~~~~~~~~~Div 69 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAAPSFGGKEG---TLQDAFDIDALKKLDII 69 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcccccCCCcc---eEEecCChhHhcCCCEE
Confidence 579999995 999999997 55444 443 433 2221 111111111 1110 0111 12445789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCC--cEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 183 LLLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~G--aiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
|+++|.....++.+++.. .| .+|++.++. +. -+-++..+-|---.......-. .|+.
T Consensus 70 f~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~----fR-------~~~dvplvvPEvN~e~i~~~~~-------~g~~ 128 (369)
T PRK06598 70 ITCQGGDYTNEVYPKLRA---AGWQGYWIDAAST----LR-------MKDDAIIILDPVNRDVIDDALA-------NGVK 128 (369)
T ss_pred EECCCHHHHHHHHHHHHh---CCCCeEEEECChH----Hh-------CCCCCcEEcCCcCHHHHHhhhh-------cCCC
Confidence 999999877777776543 57 567877764 11 1115666777555444332111 2333
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~-~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
. |+ ..+++..+.-+++.=+...|.. +++-+ .-..++|++...++-+.+...
T Consensus 129 i-Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 129 T-FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQMG 180 (369)
T ss_pred E-EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHHHH
Confidence 2 44 6666766666666555555543 22222 224578888776666655443
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.44 Score=47.94 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. .+..+..|.+.... ..++++.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQK--HPDTNATVTLLHSQ-------------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhC--cCCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999765 00002355543221 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++|+|++|++++
T Consensus 208 vG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 208 IGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEec
Confidence 98543 222 24578999988765
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.21 Score=51.05 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=45.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (417)
+--+| .+++|+|+|..|.|.+++.|.. |..-|++.+-+++..++|++.|++.
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 33467 8999999999999999999999 8866789888888899999999985
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.9 Score=44.15 Aligned_cols=171 Identities=20% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhH--HHHHHc--Ccee----------------cCCCc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTE----------------ENGTL 169 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~--~~A~~~--G~~~----------------~d~~~ 169 (417)
|.+|-|+|.|..+--+|..++.. +. +|=+..|...++. -.+.+. +... .|...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 67899999999999999999876 33 4444556543332 222222 2110 01224
Q ss_pred CCHHhhhccCCeEEEeecchhHHHHHHHHHhc-CCC-CcEEEEeccchhhhhhcccc-CCCCCCcEEEe----------c
Q 014863 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKP-NSILGLSHGFLLGHLQSMGL-DFPKNIGVIAV----------C 236 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~-Lk~-GaiL~~a~G~~i~~~~~~~i-~~~~di~VI~v----------~ 236 (417)
.+.+++..+=|.+|||||-++..+|+++|-+. |+. .++|.++..|.-+.+.+..+ ....++.||.. .
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 46777888889999999999999999875432 332 23555666554221111000 12236666632 2
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhh
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQE 297 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E 297 (417)
+..|-.+.-...++ ..++. ..+.....++....++..+|-.- ...+-++.|
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE 206 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAE 206 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhh
Confidence 33343443322222 12233 33455577888889999999653 344444444
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.63 Score=48.03 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC-------------------CchhHHHHHH-----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARA----- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~-------------------~~~s~~~A~~----- 159 (417)
.+.|++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....+..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 77 45555543 1121111111
Q ss_pred cCceec--CCCc--CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+... .... .+..+.++++|+||.++-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111110 0111 123456789999999987665555555543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.39 Score=45.85 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
.+.|+. .+|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 477888 9999999999999999999988 76 3555443
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.62 Score=49.36 Aligned_cols=73 Identities=27% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d~ 167 (417)
.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+.+++.|+... +.
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 67 9999999999999999999998 998877765421 12456677787532 11
Q ss_pred CcC---CHHhhhccCCeEEEeecc
Q 014863 168 TLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 168 ~~~---~~~Eav~~ADiViLavpd 188 (417)
.+. ..++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 111 234445679999999853
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.4 Score=51.85 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC--------------------chhHHHHHHcCceec-
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (417)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+.. ....+.+.+.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999998 99887765321 123456777886431
Q ss_pred CCCc-C--CHHhhhccCCeEEEeecch
Q 014863 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (417)
Q Consensus 166 d~~~-~--~~~Eav~~ADiViLavpd~ 189 (417)
+... . +.++.-...|.||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 1333345689999999643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.47 Score=47.54 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
++|+|||--.=-..+++.|.+. |++|.+..-++.. . ...|... +.+.++++++||+|++.+|+..-
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccccC
Confidence 8999999988888999999998 9988774322211 1 2347764 45678899999999999886311
Q ss_pred ----HH-------HH-HHHHhcCCCCcEEE
Q 014863 192 ----AD-------NY-EKIFSCMKPNSILG 209 (417)
Q Consensus 192 ----~~-------Vl-~eI~p~Lk~GaiL~ 209 (417)
.. .+ ++....|++|+++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 69 EGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred CceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 01 11 35677889997544
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.73 Score=41.07 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=64.2
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc-cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL-~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
++++. +.++.+.+..|+..+|+. ++.. .+..-.+|+..+++ |+.+.+++....+.+.++|+++++|++...--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~-~~~i---~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR-PFEI---DSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE-EEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc-eEEe---CHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 44555 789999999999999985 3322 33344588888886 88899999999999999999999988755444
Q ss_pred HHHHHHHHHHHhcHHHHHhcccCch
Q 014863 342 ITGIISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 342 l~~~~~~li~e~G~~~l~~~vs~~~ 366 (417)
+. +..+=+.+.|. .+..+.|-
T Consensus 78 i~-~t~~n~~~~g~---~~alTGP~ 98 (132)
T PF10728_consen 78 IR-ETLENILQLGP---ADALTGPA 98 (132)
T ss_dssp HH-HHHHHHHHS-H---HHH--SCC
T ss_pred HH-HHHHHHHhcCc---hhccCCCc
Confidence 44 55556666555 36667774
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.66 Score=44.79 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.+
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~------Gvg~i~lvD 58 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA------GVGRILLID 58 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 577888 9999999999999999999998 76 444443
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.81 Score=47.06 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHHHHHH-----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 477888 9999999999999999999988 76 444443321 011111111
Q ss_pred cCceec--CCCc--CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+..+ .... .+..+.++++|+|+.++-+.....++.+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111110 0111 123467899999999987665555665543
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.62 Score=51.35 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=52.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-C
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-N 166 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d 166 (417)
-.| ++|+|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+... +
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 358 9999999999999999999998 998888765531 12345566776431 1
Q ss_pred CCc---CCHHhhhccCCeEEEeecc
Q 014863 167 GTL---GDIYETISGSDLVLLLISD 188 (417)
Q Consensus 167 ~~~---~~~~Eav~~ADiViLavpd 188 (417)
..+ .+.++...+.|.||+++--
T Consensus 381 ~~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CccCCcCCHHHHHhcCCEEEEeCCC
Confidence 111 1345666789999998853
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.57 Score=47.50 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCch--hH----HHHHHcC-ceecCCCcCCHHhhhcc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~--s~----~~A~~~G-~~~~d~~~~~~~Eav~~ 178 (417)
.++| +||++||- +++..|++..+... |.++.+...+.-. .. +.+.+.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999996 69999999998887 9988776554311 11 2333444 332 4689999999
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.54 Score=46.61 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavp 187 (417)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.+. +..++++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99988777764332 2212335432111122 34567899999998764
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.5 Score=48.32 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=53.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH-HcCcee--------cCCC--cCCHHhhhcc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR-AAGFTE--------ENGT--LGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~-~~G~~~--------~d~~--~~~~~Eav~~ 178 (417)
+||+|+| .|.+|..+.+.|.+. .. ++....+..+..-+... ..++.. .+-. ..+. +.+.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~------p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC------CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcC
Confidence 7999998 899999999998765 33 55443233211110010 011100 0000 1233 44578
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|+|++++|.....++.+.+.. .|..+++.+|
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 9999999999877777655433 4666776665
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.44 Score=48.78 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.++.+...+. ...++ .+.+.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999975 8888998888877 98877765432 12222 2334563221 156899999
Q ss_pred ccCCeEEEe
Q 014863 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADiViLa 185 (417)
++||+|..-
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.6 Score=44.01 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=71.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcC----ceecCC-CcCCHHhhhcc
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG-TLGDIYETISG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~d~-~~~~~~Eav~~ 178 (417)
..++. .||.|+|.|+.|.+.|..+.-+ |+ ++.+.+-...+..-++.+.. |...-. .....-.+-++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34445 8999999999999999998887 65 44444433232222222221 211000 01112245678
Q ss_pred CCeEEEeecchhH------------HHHHHHHHhcC---CCCcEEE-Eeccchh-hhhhccccCCCCCCcEEEeccCCch
Q 014863 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 179 ADiViLavpd~a~------------~~Vl~eI~p~L---k~GaiL~-~a~G~~i-~~~~~~~i~~~~di~VI~v~Pn~pg 241 (417)
+++||+..-..+. .++++.|.|.+ .|++++. .+-.+.+ .|..-+.--+|++ +||..-.|--.
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGcnLDs 167 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGCNLDS 167 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCcCccH
Confidence 9999987753322 34566666654 5777755 4445543 2322212245665 77766665543
Q ss_pred hh
Q 014863 242 PS 243 (417)
Q Consensus 242 ~~ 243 (417)
.-
T Consensus 168 aR 169 (332)
T KOG1495|consen 168 AR 169 (332)
T ss_pred HH
Confidence 33
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.61 Score=46.88 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=40.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----c-----CceecCCCcCCHHhhhccCCeEEE
Q 014863 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-----GFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-----G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|||.|.+|.++|..|... ++ ++++.+.........+.+ . .... ..+..+.+++||+|++
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~~~~~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKI----RSGDYSDCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEE----ecCCHHHHCCCCEEEE
Confidence 799999999999999887 65 566666543332223222 1 1111 1233578899999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 71 tag 73 (299)
T TIGR01771 71 TAG 73 (299)
T ss_pred CCC
Confidence 764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.52 Score=47.68 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=54.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|.|||-+ ..|..++.-|.+. +.+.+..|.+.... ..+.++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999955 8899999998765 00002356554321 1357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEecC
Confidence 9874332 22 23578999988764
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.77 Score=47.77 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=61.9
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| ++|+|+|+ -+-...++..|.+. |.+|.+++..-.. ... ...+. +.+.++++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 4688 99999998 55777888888888 9998776654222 111 11221 35788999
Q ss_pred ccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEE
Q 014863 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~-Vl~eI~p~Lk~GaiL~~ 210 (417)
++||+|++++.-....+ -++.+...|++ .+|+|
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999887765 35667776654 35655
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.64 Score=39.51 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHhhhhhhcCCceEEEEecCC---chhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecchhHH
Q 014863 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (417)
Q Consensus 118 G~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~a~~ 192 (417)
|+|++|.+++..|...-.. .+++++...+++ ...+......... ..+.++.+. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 134443333332 1222222222222 568888888 899999999988877
Q ss_pred HHHHHHHhcCCCCcEEE
Q 014863 193 DNYEKIFSCMKPNSILG 209 (417)
Q Consensus 193 ~Vl~eI~p~Lk~GaiL~ 209 (417)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 777654 44566554
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.57 Score=48.07 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.++.+..... ....+ .+.+.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999976 7899999988877 98877655432 11222 2334453211 146899999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.1 Score=45.49 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cCCHHhhhccCCeEEEee
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~Eav~~ADiViLav 186 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++......+..+.+++.|.... +.. .....+.....|+|+-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999988888 88876655554454556667786420 000 001222233579999887
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.... .+++....++++..++..
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEEEe
Confidence 6422 334444556666655533
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.41 Score=50.95 Aligned_cols=70 Identities=26% Similarity=0.275 Sum_probs=47.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh---HHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.+.+ |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+. -..+-..++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEEE
Confidence 3456 9999999999999999999999 99998887553321 122234555432111 1125677899998
Q ss_pred Ee
Q 014863 184 LL 185 (417)
Q Consensus 184 La 185 (417)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 75
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.3 Score=50.09 Aligned_cols=168 Identities=15% Similarity=0.058 Sum_probs=88.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCceEEEEec--CCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEee
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~~Vivg~r--~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLav 186 (417)
.+|+|||. |..|.-+.+-|.++ ++ ..++..... ...+.....- .... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 79999995 99999999988774 10 124333222 1122222100 0122 2233332 36899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|.....++.+++.. .|..|+|.++-- .+.++++ .+-|---..... .++. .+ +|+ .
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~~f---------Rl~~~vP--~~lPEvn~~~l~-~i~~--------~~-iIA-n 129 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSGLF---------ALEPDVP--LVVPEVNPFVLA-DYRN--------RN-IIA-V 129 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECChHh---------cCCCCCc--eEccccCHHHHh-hhcc--------CC-EEE-C
Confidence 99877777776543 588888877631 1111222 444533221111 1111 11 344 5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.++...+.-+++.=+...|.. +. ...+.-...+|++-..++.+.+...
T Consensus 130 PgC~~t~~~laL~PL~~~~~i--------~~---viV~t~qgvSGAG~~~~~~L~~qt~ 177 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGL--------SR---LHVTNLLSASAHGKAAVDALAGQSA 177 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--------eE---EEEEeeccccccChhhHHHHHHHHH
Confidence 666666666665544444432 11 1223335678888777776554443
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.78 E-value=2 Score=44.11 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=55.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCc--eecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~--~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|||+| .|..|.-+.+.|.++ .+.++ +.+.....+.-.+...-.|. ...+ .+ ......+++|+|+.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~-~~-~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKKYIEFGGKSIGVPE-DA-ADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCccccccCccccCcc-cc-ccccccccCCEEEEeCc
Confidence 7899998 799999999999886 11222 22322221111111111222 1100 00 12234568999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.....++.++.. +.|.+|++.++.
T Consensus 76 ~~~s~~~~p~~~---~~G~~VIdnsSa 99 (334)
T COG0136 76 GSVSKEVEPKAA---EAGCVVIDNSSA 99 (334)
T ss_pred hHHHHHHHHHHH---HcCCEEEeCCcc
Confidence 888877777655 468888887764
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.68 Score=47.43 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhH----HHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |+++.+...+. .... +.+.+.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 6788888888777 98877765432 1111 22344563321 157899999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=1 Score=47.09 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=54.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
..|-|+|+|.+|..+++.|++. |.++++.+.. . .+.....|.....+...+.+ .-+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d-~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL-G--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc-h--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 4699999999999999999988 8877666543 1 23333344322111122322 13679999999998
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEE
Q 014863 188 DAAQADNYEKIFSCMKPN-SILGL 210 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~G-aiL~~ 210 (417)
++......-.....+.|+ +++.-
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEE
Confidence 876653332222334343 45543
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.58 Score=49.66 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=45.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||+
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 567 9999999999999999999999 999888774322111 1222222221 1 1123456778999887
Q ss_pred ee
Q 014863 185 LI 186 (417)
Q Consensus 185 av 186 (417)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 54
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.67 Score=45.11 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|++ .+|.|||+|-+|..++.+|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999998
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.66 Score=48.50 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHH--cCceecCCCcCC-HHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~~-~~Eav~~ADiVi 183 (417)
+++ ++|.|+|.|..|.+.|+-|++. |.+|.+.+..... ..+..++ .|+... ... .++...+.|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 457 8999999999999999999999 9988776654322 2222222 366531 112 233456899999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 854
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.54 Score=53.22 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCEEEEEcccchHHHH-HHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 ~kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
|++|.|||+|-.|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3579999999999997 9999999 99987766543333344556687642 22234567789998865
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.74 Score=43.89 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcCC----HHhhh-cc
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~----~~Eav-~~ 178 (417)
+...+ |+|.|+| .|.+|..+++.|.+. |++|++..|...+....... .++......+.+ ..+.+ .+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45566 9999999 599999999999998 99987776654332111111 123211111222 23445 57
Q ss_pred CCeEEEeecc
Q 014863 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADiViLavpd 188 (417)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 8999988654
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.55 Score=48.65 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHH---HHHH--
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARA-- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~---~A~~-- 159 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+... ...+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 578888 9999999999999999999988 76 454444320 01111 1111
Q ss_pred cCce--ecCCCc--CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~--~~d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+. .....+ .+..+.++++|+|+-|+-......++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 101111 134567899999999988877776776654
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.87 Score=46.74 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhH----HHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.++.+...+. ..-. +.+.+.|.... ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 7899999988877 98877765432 1112 23444563321 156899999
Q ss_pred ccCCeEEEe
Q 014863 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADiViLa 185 (417)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999875
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.5 Score=43.99 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.| .+|.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ...+..+.. ..|+||=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 46 899999999999988877765 3 4 356655544 34456666655432 011111111 479999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
........+++....++++-.++..
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7433344566666778887765543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.76 Score=47.10 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.+|.+...+. ....+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999987 7888888888777 88877665432 11122 2334564321 146889999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.84 Score=50.41 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=50.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d~ 167 (417)
.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+.+.+.|+... +.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999999 999888765421 12345566776431 11
Q ss_pred Cc---CCHHhhhccCCeEEEeec
Q 014863 168 TL---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 168 ~~---~~~~Eav~~ADiViLavp 187 (417)
.+ .+.++...+.|.||+++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 11 134455568999999874
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.55 Score=47.94 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=51.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--hhcCCceEEE-EecCCc----h-----hHHHHHHcC-ceecCCCcCCHHhhh-c
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKV-GLRKGS----R-----SFAEARAAG-FTEENGTLGDIYETI-S 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~--~~~~G~~Viv-g~r~~~----~-----s~~~A~~~G-~~~~d~~~~~~~Eav-~ 177 (417)
+||+|||+|++|..+++.|.+.-+ ..+.+++|+. .+++.. . .+....+.| +...+....+.++.+ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 489999999999999999977311 1122455432 333211 0 111111112 110000011344443 4
Q ss_pred cCCeEEEeecchhH-HHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~a~-~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++|+||=|+|.... ...+.-+.+.|+.|..|+.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 68999999974321 12344455566777766533
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.61 Score=47.86 Aligned_cols=64 Identities=22% Similarity=0.168 Sum_probs=42.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCC---HHhhhccCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViL 184 (417)
|++|+|||.|..|.-+++.+++. |++|++.+... ...... .+..... ...| +.+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~~--ad~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQV--ADEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhHh--CceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 58999999999999999999998 99987766542 222222 2222210 1223 4457788898753
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.6 Score=48.47 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=44.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH----HHH-HcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
||.|||+|-.|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.+.++|+||...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEECC
Confidence 589999999999999999999 9998777654332111 122 2476541 112245678899888754
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.39 Score=49.80 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=42.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-CCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-~~~~~~~Eav~~ADiViL 184 (417)
|++|||||-|..|.=|+..-+.- |+++++.+.. +.+-....+......+ +....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 48999999999999999988887 9998775532 2222222222222100 001135678889998864
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.4 Score=43.84 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=63.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc-CCHHhhh------ccCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~Eav------~~AD 180 (417)
..| .+|.|.|.|.+|...++-++.. |.++++..+.+....+.+++.|+...+... .+..+.+ ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 346 8999999999999999988888 887655544445678889998874211100 1222222 2479
Q ss_pred eEEEeecchhH-----------HHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~-----------~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++-.... ...+++....+++|-.|++.
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 99998875421 23555556677777666544
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.77 Score=47.37 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=55.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-hhhhhcCCce---EEEEe--cCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~-s~~~~~~G~~---Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
.||||||. |..|..+.+-|.+ . .+. +.... +...+....... ..... -.+.+ ...+.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999995 9999999998874 4 443 32222 222222211111 11210 12333 4578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|.....++.++.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777776653 468888887764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.45 Score=41.56 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
+||.|||+|.+|..++++|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999999 87 5555553
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.1 Score=46.20 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcC---ceecCCCcCCHHhhhcc
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ 178 (417)
.++| .||++||-+ ++..+++..+... |.++.+..... ....+.+++.| +.. ..+++|++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 5788 999999964 6888888888777 88877665432 22344455545 332 5688999999
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
||+|...+
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999864
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.1 Score=46.91 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCc
Q 014863 106 DAFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-----G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~ 169 (417)
+.++| +||+|+|- | ++..|++..+... |++|.+...++ +...+. +.+.|.... ..
T Consensus 183 ~~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~ 253 (395)
T PRK07200 183 ENLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QV 253 (395)
T ss_pred cccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34788 89999985 4 5678888888777 88887765442 222233 444563221 14
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|..-+
T Consensus 254 ~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 254 NSMEEAFKDADIVYPKS 270 (395)
T ss_pred cCHHHHhCCCCEEEEcC
Confidence 68999999999999874
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.09 E-value=1.3 Score=42.93 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..| ++|.-||+|+ | .++..++.. |...+++.+.++...+.|++ .++.. .....+.-...|+|+
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vv 184 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIV 184 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEE
Confidence 356 8999999999 5 344455555 65435677766655555544 33310 000000001479988
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.-........+++++...|+||..++++
T Consensus 185 ani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 185 ANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7665555667888899999999887754
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.1 Score=45.24 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=53.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..+|.-|.+... ..+..|.+.... ..++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~aTVtvchs~-------------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKAD--GGNATVTVCHSR-------------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCcc--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5899 999999965 789999998865400 002356554321 23567889999999998
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+--.. ++. ..++|+|++|++++
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEcc
Confidence 86432 222 24578999988764
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.59 Score=46.89 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcC-CceEEEEecCCchhHHHHHHcC-----ceecCCCcCCHHhhhccCCeEEEee
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
-..|+|.|.|+..+...-... .+ =.+|.+++|....+.+.|.... +..+-....+.+++++.+|+|+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999887765543 11 1278899999887777776321 1111112456889999999999998
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhh
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~ 217 (417)
+...- ++ ....++||+.|-.+++|+.+
T Consensus 216 lsteP--il--fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEP--IL--FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCc--ee--eeeeecCCceEeeeccCCch
Confidence 84211 11 12457899989899988643
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.65 Score=47.48 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.8
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCce---EEEEecC--CchhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEe
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~---Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLa 185 (417)
||+||| .|..|..+.+-|.+. ++. +.+..+. ..+... -.|... .+.+. .+.+.++|+||+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999998876 553 2222222 122222 112111 01111 2445899999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99998888776653 457777777763
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.85 Score=47.82 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.8
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99987766543333344455677641 11223456789998874
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.45 Score=48.70 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
|++|.|||.|.+|.+.|..|.+. |.+|++..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 57999999999999999999998 99998887753
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.1 Score=45.86 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=53.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC-CchhHHHHHHcCce---------ec------CC---CcC---
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NG---TLG--- 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~------d~---~~~--- 170 (417)
||||+|+|.+|+.+.+.|.+. ..+.+++|+..++. +.+......+++-+ .+ ++ .+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 699999999999999998765 00013565444442 23333333333210 00 00 011
Q ss_pred CHHhh---hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Ea---v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++++. -.++|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 23321 1479999999999877766544 455676655443
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=5.3 Score=37.37 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999995 89999999999988 99887766653
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.6 Score=43.89 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 477888 9999999999999999999998
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.6 Score=43.17 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=58.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC---HHhhhccCCeEEE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~Eav~~ADiViL 184 (417)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|.... + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 57 8999999999999999988888 88876665554444667777886421 0 011 1222345799999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.... .+.+....++++-.++..
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEEEE
Confidence 886432 233334455565555433
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.3 Score=46.05 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. .+|.|||+|-.|..++++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=1.3 Score=44.70 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHH-HHHcCceecCCCcCCHHhhhccCC
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~-A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
.++| .||++||- ++...|++..+... |.+|.+.....- ...+. +++.|.... ...+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4788 89999997 78999999998887 988777654321 11222 555674321 1468899999999
Q ss_pred eEEEe
Q 014863 181 LVLLL 185 (417)
Q Consensus 181 iViLa 185 (417)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.08 E-value=3 Score=41.09 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhhhc---cCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Eav~---~AD 180 (417)
|.| ++|.=|||| |+.++.-|.+. |.+| .|.+-.++..+.|+ +.|+.. +-...+.+|... .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 56777788777 8876 56776666666555 455552 222345666654 578
Q ss_pred eEEEe-----ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLa-----vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+.. +|+.. .++..+...+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEe
Confidence 87653 44433 3777888899999887665
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.8 Score=47.87 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=50.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eE--EEEecCCc------hhHHHHHHc--Cce--ecCC-CcCCHHh
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EENG-TLGDIYE 174 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~V--ivg~r~~~------~s~~~A~~~--G~~--~~d~-~~~~~~E 174 (417)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. ..+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999998 86 22 22232211 234555552 211 1011 1345778
Q ss_pred hhccCCeEEEeecchhHHH
Q 014863 175 TISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~ 193 (417)
.++..|+|++.+-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999888655543
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.1 Score=46.76 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=44.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHH--cCceecCCCcC-CHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLG-DIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~-~~~Eav~~ADiViLav 186 (417)
-.|.|||+|-.|.++|+-|++. |++|.+.+..... ..+..++ .|+... .. ...+.+.++|+||..-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~---~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELR---CGGFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEE---eCCCChHHhcCCCEEEECC
Confidence 4799999999999999999999 9988776654322 2222333 366531 11 1245567899887643
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.5 Score=44.49 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| .||++||-+ ++..+++..+.... |+++.+...+. ....+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 4788 999999976 57899988876531 67776655432 233455555565321 146899999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=2.3 Score=45.15 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=53.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|+| ++|.|||.|..+..=++.|.+. |.+|.|....-.+......+.| +....+.. . .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEEE
Confidence 57899 9999999999999999999998 8877665433222233222333 22211111 2 244789999999
Q ss_pred eecchhHHH
Q 014863 185 LISDAAQAD 193 (417)
Q Consensus 185 avpd~a~~~ 193 (417)
||.|...-+
T Consensus 79 at~d~~~n~ 87 (457)
T PRK10637 79 ATDDDAVNQ 87 (457)
T ss_pred CCCCHHHhH
Confidence 999987754
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=2.9 Score=39.58 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=30.0
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| |++.|+| .|-+|.++++.|.+. |.+|++..+..
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~ 41 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSA 41 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 9999999 489999999999998 99887765543
|
|
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.94 Score=43.90 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-----hccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-----v~~ADiV 182 (417)
.|++|||.||+|.-+.-.+.++ | ..+.+|.++.+.-+.+|.+.|+.... .-.+-+ .++-|+|
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~tt~---egv~~ll~~p~~~di~lv 75 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVATTH---EGVIGLLNMPEFADIDLV 75 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcchh---hHHHHHHhCCCCCCcceE
Confidence 5899999999999887776665 4 25778889888888888888886311 111111 2455699
Q ss_pred EEeecchhHHHHHHHH
Q 014863 183 LLLISDAAQADNYEKI 198 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI 198 (417)
|=+++..++.+-...+
T Consensus 76 fdatsa~~h~~~a~~~ 91 (310)
T COG4569 76 FDATSAGAHVKNAAAL 91 (310)
T ss_pred EeccccchhhcchHhH
Confidence 9999988887644433
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.75 E-value=2.5 Score=43.70 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC-----H----Hhhhc-c
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-----I----YETIS-G 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-----~----~Eav~-~ 178 (417)
.| .+++|+|+|-+|.|-.++++.. |-..+++.+.+....+.|++.|.+.. +.+ + .+... .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 44 7899999999999999999998 88777888887888999999998741 222 1 12233 7
Q ss_pred CCeEEEeecchh
Q 014863 179 SDLVLLLISDAA 190 (417)
Q Consensus 179 ADiViLavpd~a 190 (417)
+|.+|-++-...
T Consensus 255 ~d~~~e~~G~~~ 266 (366)
T COG1062 255 ADYAFECVGNVE 266 (366)
T ss_pred CCEEEEccCCHH
Confidence 889988887544
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.72 E-value=5.4 Score=37.05 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhh-----hccCCe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Ea-----v~~ADi 181 (417)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. ....+.+.+.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 456 8999999999999999888887 8887665554 344556666664320 1001112222 246899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+.+++.. ..+..+...++++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2333444555565555543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.7 Score=45.03 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCc
Q 014863 106 DAFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G--------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~ 169 (417)
+.++| +||+|+|.| ++..|++..+... |++|.+...+. +...+. +.+.|.... ..
T Consensus 166 ~~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~ 236 (357)
T TIGR03316 166 ENLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IV 236 (357)
T ss_pred cccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34788 999999853 4457788877776 98887765442 222233 334564321 14
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|..-.
T Consensus 237 ~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 237 NSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCHHHHhCCCCEEEECC
Confidence 68999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.1 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 014863 113 QIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s 133 (417)
||.|||+|-.|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.4 Score=46.34 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=56.6
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--CceecCCCcCCHHhh
Q 014863 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (417)
Q Consensus 108 l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~Ea 175 (417)
|+| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... +... ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 3345566666666 9998776543 22333322 2332 5789999
Q ss_pred hccCCeEEEeecchhHHHHH-HHHHhcCCCCcEEE
Q 014863 176 ISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILG 209 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl-~eI~p~Lk~GaiL~ 209 (417)
+++||.+++++-.+...++= +.+ .|+. .+|+
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~~-~~v~ 405 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMKT-PVVI 405 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hccC-CEEE
Confidence 99999999999988877643 334 4543 3444
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.4 Score=45.86 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=44.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+.+ ++|.|||+|-.|.+.++-|++. |.+|.+.+...... .+. .+.|+.... -....+.+++.|+||..-
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~--~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHT--GSLNDEWLLAADLIVASP 73 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEe--CCCCHHHhcCCCEEEECC
Confidence 346 8999999999999999988888 99887665433221 222 233765310 012334567789766543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=2 Score=47.54 Aligned_cols=74 Identities=24% Similarity=0.204 Sum_probs=50.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d 166 (417)
.-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-
T Consensus 190 ~~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~ 262 (652)
T PRK12814 190 PKSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF 262 (652)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 3457 8999999999999999999998 998887765421 113445566765321
Q ss_pred CCc----CCHHhhhccCCeEEEeec
Q 014863 167 GTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~~----~~~~Eav~~ADiViLavp 187 (417)
.+. .+.++.....|.||+++-
T Consensus 263 ~~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 263 NTVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CCcccCccCHHHHHhhcCEEEEEcC
Confidence 111 123444456999999885
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.36 E-value=3.5 Score=39.45 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH---Hhhhc-------
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~Eav~------- 177 (417)
++ ++|.|.|. |-+|.++++.|.+. |++|++..|..++ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999995 89999999999988 9988777665433 3333333432111112333 23333
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799998764
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.9 Score=44.35 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| .||++||= +++..+++..|...+ |.++.+....+ ....+.+++.|...+ .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5789 99999997 588999888765331 77776655432 233455555564321 146889999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.8 Score=43.48 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. .+|.|||+|-.|..+|+||..+ |+ ++.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 356677 8999999999999999999998 87 455544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.7 Score=39.40 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=49.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH---HhhhccCCeEEEeecch
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~Eav~~ADiViLavpd~ 189 (417)
++.|+|.|..|..++..|++. |++++-..+.+..... ..-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~~-~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQG-TSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCccccC-cccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 9987766655432111 11245543 2333 33344568899999754
Q ss_pred hH-HHHHHHHHh
Q 014863 190 AQ-ADNYEKIFS 200 (417)
Q Consensus 190 a~-~~Vl~eI~p 200 (417)
.. .++++.+..
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 44 456555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=5.5 Score=36.93 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
++| ++|.|.|. |.+|.++++.|++. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999996 67999999999998 999888777644
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.27 E-value=4.1 Score=38.79 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=56.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCcCCHHhh--hccCCeEEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea--v~~ADiViL 184 (417)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++. +.+.+..+.+.+.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~-~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGV-DPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-CCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999998888887 877 6544 4434456687877721 1111111111 135899998
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344455566666655544
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.5 Score=40.63 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceec-CCCcCCHHh----hh--ccCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E----av--~~AD 180 (417)
.| ++|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|.... +..-.+..+ .. ...|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~-~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAV-DIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999988888 885 5444 444556778888886310 101112222 22 2479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++... ..++.....++++-.++..
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 999888642 2233334456666665544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.10 E-value=3.8 Score=40.45 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=56.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceec-CCCcCCHH---hhhc--cCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~---Eav~--~AD 180 (417)
..| .+|.|+|.|.+|...++-++.. |.+ |++..+ +.+..+.+++.|.... +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~-~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDP-SPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 347 8999999999999999988888 887 665444 3455677788886320 10001111 2222 579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|+-++..... +......++++..++.
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVL 260 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEE
Confidence 99988876543 2233344555555543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.8 Score=45.75 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d 166 (417)
.-.+ ++|+|||.|..|.+.|..|++. |++|++..+.+. ...+.+.+.|+...-
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3467 8999999999999999999998 998887765321 112445666765321
Q ss_pred CC-c---CCHHhhhccCCeEEEeec
Q 014863 167 GT-L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~-~---~~~~Eav~~ADiViLavp 187 (417)
++ + .+..+.....|.||+++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 213 NVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred CCEECCcCCHHHHHhhCCEEEEecC
Confidence 11 1 123444457899999874
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=2 Score=45.68 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| +||++||- +++..|++..+...+ |+++.+...+. ....+.+.+.|.... ...+++|++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3789 99999998 489999998875521 77776654432 223345555564321 146889999999
Q ss_pred CeEEEee
Q 014863 180 DLVLLLI 186 (417)
Q Consensus 180 DiViLav 186 (417)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999844
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.91 E-value=3.1 Score=43.34 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=54.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC--C-----------------chhHHHHH---H--
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---A-- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~---~-- 159 (417)
.+.|+. .+|.|||+|-.|..++++|..+ |+ ++.+.+.. + .+....++ +
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 568888 9999999999999999999998 76 33333321 0 01111111 1
Q ss_pred cCceec--CCCcC--CHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~~~--d~~~~--~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+..+ ...+. +..+.+.++|+||.|+=+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111110 11111 23467899999999988777766776644
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=3.1 Score=39.32 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.++| ++|.|+|. |-+|.++++.|.+. |++|++..|+
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4778 99999997 89999999999998 9988776664
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.80 E-value=4 Score=41.18 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cCCHHhhhccCCeEEEee
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~Eav~~ADiViLav 186 (417)
.| .++.|+|.|.+|...++-++.. |.++++..+.+.+....+++.|.... +.. .....+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8999999999999999988888 88776666554443344455776320 000 001122233579999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
... ..++.....++++..++..
T Consensus 253 g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cch---HHHHHHHHHhccCCEEEEE
Confidence 743 2333444556666665543
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.79 E-value=3.1 Score=41.63 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. .+..+.+++.|..
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGAD 212 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCc
Confidence 46 8999999999999999999888 8877655444 4456788888863
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=87.79 E-value=1.8 Score=43.77 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.++| .||++||- ++...|++..+... |.+|.+...+. ....+. +.+.|.... ...+.+++++
T Consensus 145 ~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~ 215 (304)
T TIGR00658 145 KLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVK 215 (304)
T ss_pred CCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhC
Confidence 3788 99999996 68889999888877 88877765332 111222 344553211 1468899999
Q ss_pred cCCeEEEe
Q 014863 178 GSDLVLLL 185 (417)
Q Consensus 178 ~ADiViLa 185 (417)
+||+|...
T Consensus 216 ~aDvvy~~ 223 (304)
T TIGR00658 216 GADVIYTD 223 (304)
T ss_pred CCCEEEEc
Confidence 99999985
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.68 E-value=4.4 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=54.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~ADi 181 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++.. .++...+.+++.|.... +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~-~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVD-LNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEc-CCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 56 8999999999999999988888 88 465444 44555778888886321 100011112221 4799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+-++.... .+......++++..++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 998886322 2333333455555544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.60 E-value=1.8 Score=45.31 Aligned_cols=67 Identities=28% Similarity=0.298 Sum_probs=43.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH----HHHHHcCceecCCCcCC---HHhhhccCCeEEEe
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLa 185 (417)
||.|||.|..|.+.|+.|++. |+.|.+.++...... ...++.|+...-+...+ ..+...+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 799999999999999999999 999877765533212 22345576531000011 11356789998884
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.5 Score=45.08 Aligned_cols=74 Identities=27% Similarity=0.286 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d 166 (417)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3457 8999999999999999999998 988877754321 112444556765321
Q ss_pred CC-cC---CHHhhhccCCeEEEeec
Q 014863 167 GT-LG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~-~~---~~~Eav~~ADiViLavp 187 (417)
+. +. +.++.....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~VilAtG 237 (485)
T TIGR01317 213 NTEIGVDISADELKEQFDAVVLAGG 237 (485)
T ss_pred CCEeCCccCHHHHHhhCCEEEEccC
Confidence 11 11 23344456899999885
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=87.52 E-value=4 Score=42.64 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=68.1
Q ss_pred hHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH
Q 014863 80 KKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (417)
Q Consensus 80 ~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (417)
-.-.++|...+|.++-+.=- ........+-++|.|||+| .|..+...|+.. +..-++..+.++...+.|+.
T Consensus 122 LDG~~Q~se~DE~iYHE~Lv--hp~m~~h~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 122 LDKQLQFSSVDEQIYHEALV--HPIMSKVIDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred ECCeeccccccHHHHHHHHH--HHHHHhCCCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHh
Confidence 33445677777766541100 0001112223899999998 455554445433 33334455566666777775
Q ss_pred c---------CceecCCC----cCCHHhhh----ccCCeEEEeecchhH--------HHHHHHHHhcCCCCcEEEEecc
Q 014863 160 A---------GFTEENGT----LGDIYETI----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 160 ~---------G~~~~d~~----~~~~~Eav----~~ADiViLavpd~a~--------~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
. ++. +.. ..|..+.+ ..-|+||+=.|+... .+.++.+...|+||-+++.-++
T Consensus 193 ~~~L~~~~~~~~~--DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 193 VPELVSLNKSAFF--DNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccccchhccccCC--CCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 2 111 000 23333332 346999999876422 4577789999999998765443
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.49 E-value=3.5 Score=41.02 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHh---hh--ccCC-e
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE---TI--SGSD-L 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E---av--~~AD-i 181 (417)
.| ++|.|.|.|.+|...++-++.. |.++++.........+.+++.|.... +..-.+.++ .. ...| +
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 57 8999999999999999988888 88644444444445667777775310 100011111 11 1346 7
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+-++.... .+.+....+++|-.++..
T Consensus 233 v~d~~G~~~---~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGVPQ---TVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 777777432 333333445555555433
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=87.48 E-value=7.4 Score=32.12 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=54.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCH----HhhhccCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDI----YETISGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~----~Eav~~AD 180 (417)
.+ ++|.-||+|.= .++..+.+.. .+.++ ++.+.+....+.++ ..+.....-...+. .......|
T Consensus 19 ~~-~~vldlG~G~G--~~~~~l~~~~----~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSG--SITIEAARLV----PNGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCC--HHHHHHHHHC----CCceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 78999999983 3333343330 02244 56665554444433 23321000001121 12235799
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|++.-++....++++.+...|++|..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=2.3 Score=46.35 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d~ 167 (417)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.+. +..+...+.|+... +.
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 998877654321 12345566676431 11
Q ss_pred Cc---CCHHhhhccCCeEEEeec
Q 014863 168 TL---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 168 ~~---~~~~Eav~~ADiViLavp 187 (417)
.+ .+.++.....|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 11 123444457999999996
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.16 E-value=3.8 Score=40.88 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=91.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhH----HHH---HHcCceecCCCcCCHHhhhccCCe
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~----~~A---~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
|+||+|+|+ |-||..+.+.+... .++++.....+. +.+. ..+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 489999997 99999999999876 145655554432 2111 111 1123332 2345677889999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhH--HHHHhhcccccC-CC
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~~G~e~~G-~G 258 (417)
+|=-+-|....+.++-...+= -.+|+=..||+-..++. .....+.+. +.++||..--+. -.+-++--...+ +-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~-l~~~a~~v~-vv~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEK-LREAAEKVP-VVIAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHH-HHHHHhhCC-EEEeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988888886544331 22566678887333221 001122333 457888764431 011010000011 22
Q ss_pred ceEEEeecC-----CCCHHHHHHHHHHHHHhC
Q 014863 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (417)
Q Consensus 259 v~~liav~q-----d~sgea~e~a~al~~aiG 285 (417)
+- +|-.|. -+||.|+.+++.+.++.|
T Consensus 149 iE-IiE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IE-IIEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EE-ehhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 22 222232 367899999999999998
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=87.09 E-value=0.81 Score=44.26 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhh------cc-CCe
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav------~~-ADi 181 (417)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........+ +.+++ .. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 5889996 99999999999998 999988888644221 1122110011222 33455 45 899
Q ss_pred EEEeecc
Q 014863 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=3.4 Score=39.46 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 567 89999995 78999999999998 99988776653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=2.5 Score=39.96 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|..
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 567 99999995 79999999999998 99988777653
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=86.78 E-value=2.3 Score=42.75 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-HH--Hc---CceecCCCcC---CHHhh
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR--AA---GFTEENGTLG---DIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-A~--~~---G~~~~d~~~~---~~~Ea 175 (417)
..+++ ++|.|.|. |-+|..+++.|.+. |++|++..|........ .. .. .+......+. +..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34567 99999997 99999999999999 99887766653321111 01 11 1111001122 34567
Q ss_pred hccCCeEEEeecc
Q 014863 176 ISGSDLVLLLISD 188 (417)
Q Consensus 176 v~~ADiViLavpd 188 (417)
++++|+||.+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899999988753
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.7 Score=46.41 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 46899 9999999999999999999888 988765534
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.3 Score=46.77 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47899 9999999999999999999998 98876
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=2.7 Score=43.23 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHH----HHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~d~~~~~~~Eav~ 177 (417)
.++| .||++||- .++..|++..+... |.+|.+...+. ..-.+.+ ...|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5788 99999997 57888888888777 88877765432 1222332 33453221 1468899999
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999833
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=4 Score=43.09 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=63.0
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh
Q 014863 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea 175 (417)
+.++| +||+|.|+ .+-+..++..|++. |.+|.+++..-. ..+.....|... + + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCccc----c-h-hhh
Confidence 34788 99999998 57788899999888 998877654311 111212334331 1 1 235
Q ss_pred hccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
+++||.|+++|.-....++ ++.+...++...+|+|.-++
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 7789999999998777643 55666666644577776554
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=86.54 E-value=1 Score=46.72 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.4
Q ss_pred hhhcccchhhhccCccc--ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 84 ISLADRDEYIVRGGRDL--FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 84 ~~~~~~~e~~~~~g~~~--f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.+|+.-+|..+.+.-|. |.+. ..... ..|.|||.|..|...|..|.+. .|++|.+..+.
T Consensus 65 ~~f~~~~e~~is~~i~~~~~~~l-~~~~~-~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~ 125 (357)
T PLN02661 65 FKFAPIKESIVSREMTRRYMTDM-ITYAD-TDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQS 125 (357)
T ss_pred ccceechhhHhhccchHhHhhhh-hhccc-CCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecC
Confidence 46777788777766552 3333 33334 5799999999999999999753 16777776654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.3 Score=39.35 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.4
Q ss_pred cccccCCCCEEEEEcc-c-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 104 LPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 104 ~~~~l~g~kkIgIIG~-G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
....++| +++.|.|. | -+|.++++.|.+. |.+|++..+.
T Consensus 11 ~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 11 GHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred cccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3456778 99999997 6 5999999999998 9988776664
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.9 Score=45.44 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.|+| ++|+|=|+||.|...|+-|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 998877766543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=3.1 Score=38.68 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.++| ++|.|.|. |.+|..+++.|.+. |++|++..|..+
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~ 44 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAA 44 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3677 99999997 79999999999998 998877766533
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.30 E-value=4.5 Score=41.21 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=48.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----c
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----G 178 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~ 178 (417)
-.| .+|.|+|.|.+|...++-++.. |. +|++..+ +....+.+++.|.... +... .+..+.+. .
T Consensus 197 ~~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 197 QAG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGVDI-NPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEEcC-ChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCC
Confidence 356 8999999999999999998888 88 4654444 4556788888886320 1000 01222221 4
Q ss_pred CCeEEEeecc
Q 014863 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADiViLavpd 188 (417)
.|+|+-++-.
T Consensus 269 ~dvvid~~G~ 278 (381)
T PLN02740 269 VDYSFECAGN 278 (381)
T ss_pred CCEEEECCCC
Confidence 7888888874
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.14 E-value=4.7 Score=39.40 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=57.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHh-hhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E-av~~ADiViLav 186 (417)
.+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.++
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcC
Confidence 356 7999999999999999888887 88876665553 4456667777632 111111 223578888876
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+.. ..++++...++++..++.
T Consensus 234 ~~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 234 PVG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred CcH---HHHHHHHHHhhcCCEEEE
Confidence 543 345566666766666553
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.06 E-value=4.1 Score=40.34 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC-HHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~-~~Eav~~ADiViLa 185 (417)
-+| .+|.|.|.|.+|.+.++-++.. |.++++..+. .+..+.+.+.|.... +..-.+ ..+.-...|+|+-+
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~ 239 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDT 239 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence 356 8999999999999999888888 8877665554 344666677775320 000001 11223567999998
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++... .+.+....++++..++..
T Consensus 240 ~g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 240 VSASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCCcc---hHHHHHHHhcCCCEEEEE
Confidence 88652 234444556555555433
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.93 E-value=2.7 Score=41.06 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh--HHHHHH-cC----ceecCCCc---CCHHhhhcc
Q 014863 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG----FTEENGTL---GDIYETISG 178 (417)
Q Consensus 110 g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s--~~~A~~-~G----~~~~d~~~---~~~~Eav~~ 178 (417)
| ++|.|.| .|-+|..+++.|.+. |++|++..|..... ...... .+ +......+ ....+++++
T Consensus 4 ~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (322)
T PLN02662 4 G-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDG 76 (322)
T ss_pred C-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcC
Confidence 5 8999999 699999999999999 99887666653321 111111 11 11000111 235567888
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
+|.||.+..
T Consensus 77 ~d~Vih~A~ 85 (322)
T PLN02662 77 CEGVFHTAS 85 (322)
T ss_pred CCEEEEeCC
Confidence 999988764
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=85.91 E-value=4 Score=38.58 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.|+| |+|.|.| .|.+|.++++.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 5778 9999999 489999999999998 9888776554
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.8 Score=43.02 Aligned_cols=71 Identities=14% Similarity=0.006 Sum_probs=46.7
Q ss_pred cc-CCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCceEEEEec-CC----chhHHH----HHHcCceecCCCc
Q 014863 107 AF-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTL 169 (417)
Q Consensus 107 ~l-~g~kkIgIIG~G-------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~~----~~s~~~----A~~~G~~~~d~~~ 169 (417)
.+ +| .||+|++.| ++..+++..+... |.++.+... +. ....+. +.+.|.... ..
T Consensus 165 ~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~ 235 (335)
T PRK04523 165 TTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VS 235 (335)
T ss_pred CccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 36 78 899776543 6788888877777 988877665 32 112222 344563221 14
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|..-.
T Consensus 236 ~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 236 HDIDSAYAGADVVYAKS 252 (335)
T ss_pred cCHHHHhCCCCEEEece
Confidence 68899999999999855
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=2.1 Score=43.39 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.5
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.++| .||++||- +++..|++..+... |+++.+...++-.... . ..+.. ..+++|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999999887 9887776543211000 1 01232 578999999999887
Q ss_pred Ee
Q 014863 184 LL 185 (417)
Q Consensus 184 La 185 (417)
.-
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
|
|
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=2.4 Score=42.93 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=46.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.++| .||++||-+ ++..|++..+... |.+|.+..... ....+ .+.+.|.... ...+ .++++
T Consensus 144 ~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~~ 213 (302)
T PRK14805 144 DVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAIE 213 (302)
T ss_pred CcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHHC
Confidence 4788 999999975 6778888888777 98887765432 11222 2334465421 1245 56899
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|...+
T Consensus 214 ~aDvvy~~~ 222 (302)
T PRK14805 214 GHDAIYTDT 222 (302)
T ss_pred CCCEEEeec
Confidence 999999855
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=85.59 E-value=1.6 Score=47.96 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--------cC------ceecCCCcC
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AG------FTEENGTLG 170 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--------~G------~~~~d~~~~ 170 (417)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|...+....+.. .| +......+.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 34456 89999995 89999999999998 99988877764432222111 11 111011133
Q ss_pred C---HHhhhccCCeEEEeec
Q 014863 171 D---IYETISGSDLVLLLIS 187 (417)
Q Consensus 171 ~---~~Eav~~ADiViLavp 187 (417)
+ +.+++.++|+||.+.-
T Consensus 149 D~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CHHHHHHHhcCCCEEEEccc
Confidence 3 3446788999998864
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=2.2 Score=42.58 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=40.9
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-HHcCceecCCCcC-C---HHhhhccCCeEEE
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLG-D---IYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~d~~~~-~---~~Eav~~ADiViL 184 (417)
||||.|.|. |.+|..+++.|.+. -|++|+...|...+ .... ...++......+. + ..++++++|+||-
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-----~~~~V~~~~r~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-----TDWEVYGMDMQTDR-LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-----CCCeEEEEeCcHHH-HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 589999996 99999999999874 04787665553221 1111 1123221111121 2 2356788999984
Q ss_pred e
Q 014863 185 L 185 (417)
Q Consensus 185 a 185 (417)
+
T Consensus 75 ~ 75 (347)
T PRK11908 75 L 75 (347)
T ss_pred C
Confidence 3
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=3.6 Score=38.32 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999994 89999999999998 99987777764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.4 Score=38.83 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|..
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 567 89999996 89999999999998 99887776654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=85.35 E-value=1.9 Score=34.09 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
||.|||.|..|--+|..|++. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999998 98888877653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=4.1 Score=38.79 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 4 ~l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl-- 64 (252)
T PRK06079 4 ILSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV-- 64 (252)
T ss_pred ccCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC--
Confidence 3677 999999985 7999999999998 9998877664 2222221111 1 00000 112343
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+..+.++++++.....+=.+|+..+|+
T Consensus 65 --~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 --ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred --CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 34455566777766544322356766775
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.7 Score=43.66 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=75.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.|+-+=| .|.||.-+.+.+++. |.+++.+..++.-.... .|..+ +.+.+|+++ ++|+-++.+|+
T Consensus 9 tkvivqGitg~~gtfh~~~~l~y------Gt~~V~GvtPgkgG~~~---~g~PV----f~tV~EA~~~~~a~~svI~Vp~ 75 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAY------GTKIVGGVTPGKGGQTI---LGLPV----FNTVEEAVKETGANASVIFVPP 75 (293)
T ss_pred CeEEEeccccccchHHHHHHHHh------CCceeecccCCCCceEE---cCccH----HHHHHHHHHhhCCCEEEEecCc
Confidence 6777778 689999999999999 88776665543211100 23332 456777764 58999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 189 ~a~~~-Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
....+ +++.+-..+ ..+++++-|+..+..-..... -+...+..+-||+|+-....
T Consensus 76 ~~aadai~EAida~i--~liv~ITEgIP~~D~~~~~~~-a~~~g~~iiGPncpGiI~Pg 131 (293)
T COG0074 76 PFAADAILEAIDAGI--KLVVIITEGIPVLDMLELKRY-AREKGTRLIGPNCPGIITPG 131 (293)
T ss_pred HHHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHHH-HHhcCCEEECCCCCccCcCC
Confidence 87775 444444334 236779999875432110001 12234677889999887543
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.24 E-value=5 Score=39.94 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHh----hh--ccCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E----av--~~ADi 181 (417)
+| .+|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +....+..+ .. ...|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999888887 88544445444556788888886320 100012111 22 24799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+-++... +.+.+....++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88887743 23444455566655554
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=8.6 Score=37.83 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=55.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc----cCCe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~----~ADi 181 (417)
.+| .+|.|+|.|.+|.+.++.++. . |.++++..+..+...+.+.+.|.... +..-.+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 457 899999999999998887774 5 77655555555566777888886321 100112333332 3468
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|+-++... ..+.+....++++-.++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVL 257 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEE
Confidence 88777632 123333445555555443
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=3.8 Score=38.44 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++| |+|.|.|. |.+|.++|+.|.+. |++|++..|+
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~ 37 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADID 37 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecC
Confidence 467 89999995 79999999999998 9988777665
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=85.15 E-value=1.3 Score=43.02 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
+|.|||.|.-|.+.|..|++. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 699999999999999999999 99999988753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=5.5 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| +++.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 79999999999998 99988877653
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=85.06 E-value=6.6 Score=40.10 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=54.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.+| .+|.|+|.|.+|...++-++.. |..+++..+.+....+.+++.|.... +..- .+..+.+. ..
T Consensus 192 ~~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 357 8999999999999999988888 88544444434455778888886320 1000 01222221 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEE
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILG 209 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~ 209 (417)
|+|+-++-... .+......+++| -.++
T Consensus 265 d~vid~~G~~~---~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 265 DYSFECVGDTG---IATTALQSCSDGWGLTV 292 (378)
T ss_pred CEEEECCCChH---HHHHHHHhhccCCCEEE
Confidence 88888876432 223333345554 4443
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=8.5 Score=35.33 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
++| ++|.|+| .|.+|.++++.|.+. |.+|++..|+..
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAA 42 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 9999999 489999999999998 998877776543
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=2 Score=43.70 Aligned_cols=65 Identities=9% Similarity=0.165 Sum_probs=46.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH-HcCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.++| .||++||= +++..|++..+... |. ++.+.....- +.... ...+.. ..++++++++||+
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCE
Confidence 4778 99999997 69999999999887 87 7766554321 10011 112432 4688999999999
Q ss_pred EEE
Q 014863 182 VLL 184 (417)
Q Consensus 182 ViL 184 (417)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 986
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=2.7 Score=44.80 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
..|+| ++|+|.|+|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 46899 9999999999999999999998 998776333
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.92 E-value=2.2 Score=44.72 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=51.2
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHh
Q 014863 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 106 ~~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E 174 (417)
..++| ++|+|+|+ .+-...+++.|++. | .+|.+++..-. ........... ..+.+|
T Consensus 316 ~~~~~-~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~------gg~~v~~~DP~~~-~~~~~~~~~~~-----~~~~~~ 382 (415)
T PRK11064 316 KRASE-VKIACFGLAFKPNIDDLRESPAMEIAELIAQW------HSGETLVVEPNIH-QLPKKLDGLVT-----LVSLDE 382 (415)
T ss_pred cCcCC-CEEEEEeeEECCCCcchhhChHHHHHHHHHhc------CCcEEEEECCCCC-chhhhccCcee-----eCCHHH
Confidence 34688 99999998 45677888888887 7 77766554321 11111111222 457889
Q ss_pred hhccCCeEEEeecchhHHH
Q 014863 175 TISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~ 193 (417)
++++||+|+++++-....+
T Consensus 383 ~~~~ad~vvi~t~~~~~~~ 401 (415)
T PRK11064 383 ALATADVLVMLVDHSQFKA 401 (415)
T ss_pred HHhCCCEEEECCCCHHhcc
Confidence 9999999999999877654
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=84.71 E-value=1.4 Score=43.52 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| +||+|.|+|+.|...|+-|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 57889 9999999999999999999988 98876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.61 E-value=5.3 Score=39.05 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=53.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceec-CCCcCCHHh----hhccCCe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E----av~~ADi 181 (417)
.+| .+|.|+|.|.+|.+.++.++.. |.+ |++..+. .+..+.+.+.|.... +..-.+..+ .-+..|+
T Consensus 158 ~~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~ 229 (334)
T cd08234 158 KPG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEPN-EEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDV 229 (334)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCC-HHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcE
Confidence 356 8999999999999999988888 887 5444443 444556666665210 100011110 1245899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|+-++... ..+.+....|+++..++.
T Consensus 230 v~~~~~~~---~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 230 VIEATGVP---KTLEQAIEYARRGGTVLV 255 (334)
T ss_pred EEECCCCh---HHHHHHHHHHhcCCEEEE
Confidence 99888632 233333444555554443
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=3.2 Score=39.16 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++| |++.|.|. |-+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999996 78999999999998 9998877665
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=84.59 E-value=5.6 Score=37.55 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=44.1
Q ss_pred EEEEEcccchHHHH-HHHHHhhhhhhcCCc-eEEEEecCCchhHH--------HHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDI-VVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~--------~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
||+|||.|+.-.+. ...+.... ..... ++.. .+.+++.++ ..++.|....-...+|.+||+++||+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~--~~l~~~ei~L-~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT--EELSGSEIVL-MDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT--TTSTEEEEEE-E-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcC--ccCCCcEEEE-EcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEE
Confidence 79999999886663 22222220 01122 4544 444443332 222334321112357899999999999
Q ss_pred EEeecchhHHH-HHHHHHh
Q 014863 183 LLLISDAAQAD-NYEKIFS 200 (417)
Q Consensus 183 iLavpd~a~~~-Vl~eI~p 200 (417)
|..+-+.-... ..++-.|
T Consensus 78 i~~irvGg~~~r~~De~Ip 96 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIP 96 (183)
T ss_dssp EE---TTHHHHHHHHHHTG
T ss_pred EEEeeecchHHHHHHHHHH
Confidence 99998876653 3344333
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.57 E-value=3.1 Score=46.27 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCch
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~ 152 (417)
+.++| ++|.|+| .|-+|.++++.|.+. |.+|++..|+..+
T Consensus 418 ~~l~g-k~vLVTGasggIG~~la~~L~~~------Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAG-KVALVTGAAGGIGKATAKRLAAE------GACVVLADLDEEA 458 (681)
T ss_pred cCCCC-CEEEEecCCCHHHHHHHHHHHHC------cCEEEEEeCCHHH
Confidence 45678 9999999 599999999999998 9988877776443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 417 | ||||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 1e-167 | ||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 1e-166 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 4e-22 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 2e-09 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 3e-09 |
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 417 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 1e-161 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 3e-09 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 2e-47 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 4e-43 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 1e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 463 bits (1194), Expect = e-161
Identities = 295/338 (87%), Positives = 318/338 (94%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFY 352
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 10/107 (9%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+D+ G ++ + + G + +V ++ + +G+ +
Sbjct: 383 ENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFM 442
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG 405
++ S + K Y + + + V + I +++
Sbjct: 443 VDNCSTTARLGSRKWAPRFDYILTQ---QAFVTVDKDAPINQDLISN 486
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-47
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
TT + E +D+FGE+ +L G +V++ F E G ++AY EC+ +I
Sbjct: 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
++ G+ + S S
Sbjct: 235 VDLMYEGGIANMNYSIS 251
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A ++ E +SD+ GE+ IL G + F + E G + A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 343 TGIISKII 350
G + I
Sbjct: 256 FGW--ETI 261
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 5e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 60/503 (11%), Positives = 148/503 (29%), Gaps = 137/503 (27%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGPA---QAQNLRDSL-----------AEA---KSDIVV---------KVGL 147
I +++ + L A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNI----GVIAVCPKGMGP 242
DN++ + +C K +I+ S L + + FP + ++++ +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIK 401
Query: 243 SVRRLYVQGKE----INGAGINSSFAVH-------QDVDGRAT---------NVALGWSV 282
S + V + S+ ++ ++ N+ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-- 459
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGI-LLGAVHGIVESLFR------RFTENGMNEDLAY 335
+Y + G L H +LFR RF E + +
Sbjct: 460 ---DSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRH 509
Query: 336 KNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAG 395
+T +G I++T L Y + ++ ++E+ +A ++ L + E++
Sbjct: 510 DSTAWNASG---SILNTLQQLKFYKPYICDNDPKYERLVNA----ILDFLPKIEENLICS 562
Query: 396 SEIRSVVLA----GRRFYVSSYR 414
+ +A + +++
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHK 585
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 100.0 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.98 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.96 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.92 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.89 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.88 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.88 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.85 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.84 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.84 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.82 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.79 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.79 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.78 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.66 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.65 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.62 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.6 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.59 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.59 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.58 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.56 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.56 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.55 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.55 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.54 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.53 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.52 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.51 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.5 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.5 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.47 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.47 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.46 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.46 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.45 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.45 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.45 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.44 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.43 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.43 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.42 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.41 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.41 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.41 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.4 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.4 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.39 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.39 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.39 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.39 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.38 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.38 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.38 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.37 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.37 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.37 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.36 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.33 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.32 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.31 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.97 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.29 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.29 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.28 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.27 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.27 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.26 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.24 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.24 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.23 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.22 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.22 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.17 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.17 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.16 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.14 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.14 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.13 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.13 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.12 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.12 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.12 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.11 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.11 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.1 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.1 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.09 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.09 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.08 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.07 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.05 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.05 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.05 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.05 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.05 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.04 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.03 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.03 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.03 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.02 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.01 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.0 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.98 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.98 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.97 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.97 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.96 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.94 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.92 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.91 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.89 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.84 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.81 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.79 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.78 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.78 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.74 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.74 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.71 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.7 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.69 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.66 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.65 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.63 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.63 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.62 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.61 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.61 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.58 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.58 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.57 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.55 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.52 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.51 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.49 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.48 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.44 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.42 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.36 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.36 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.34 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.29 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.27 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.27 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.27 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.26 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.25 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.25 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.24 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.23 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.22 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.22 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.2 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.19 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.19 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.18 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.17 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.17 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.15 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.14 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.13 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.13 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.12 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.11 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.1 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.08 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.08 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.07 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.06 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.06 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.05 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.05 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.04 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.03 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.03 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.02 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.0 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.99 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.97 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.96 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.95 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.94 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.93 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.93 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.9 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.9 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.9 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.9 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.87 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.86 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.85 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.82 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.81 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.79 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.78 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.78 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.76 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.74 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.74 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.74 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.73 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.72 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.71 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.68 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.68 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.66 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.66 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.66 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.65 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.63 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.62 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.61 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.6 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.57 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.57 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.56 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.56 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.55 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.55 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.54 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.53 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.53 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.52 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.52 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.51 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.51 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.5 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.49 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.47 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.41 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.41 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.4 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.38 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.37 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.36 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.36 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.34 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.31 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.31 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.3 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.3 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.29 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.28 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.25 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.24 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.24 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.22 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.2 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.16 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.16 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.14 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.13 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.12 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.12 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.1 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.08 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.07 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.06 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.06 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.06 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.04 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.03 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.02 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.95 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.95 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.95 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.9 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.89 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.89 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.86 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.84 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.79 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.78 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.76 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.76 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.76 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.75 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.74 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.74 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.71 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.7 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.68 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.61 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.56 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.56 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.55 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.53 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.5 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.49 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.47 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.47 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.32 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.31 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.25 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.18 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.17 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.16 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.16 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.14 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.09 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.07 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.07 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.07 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 96.05 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.97 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.92 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.89 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.77 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.75 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.72 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.66 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.61 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.6 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.52 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.44 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.43 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.36 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.35 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.33 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.31 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.26 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.25 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.2 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.19 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.19 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.18 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.12 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.1 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.07 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.98 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.93 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 94.85 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.82 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.81 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.77 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.73 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 94.59 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.58 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.47 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.45 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.44 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.42 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.42 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.4 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.34 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 94.34 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 94.31 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 94.3 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.29 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.23 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 94.23 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.18 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.17 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.17 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 94.14 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.13 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.13 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.13 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.12 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.11 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 94.03 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.02 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.99 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 93.97 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.97 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.96 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.93 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.86 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.82 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.75 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.71 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.67 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.67 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.64 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 93.63 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.59 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 93.55 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.52 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 93.5 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.5 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.47 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.46 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.39 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 93.39 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.31 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.24 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.24 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 93.19 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 93.17 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.17 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.14 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 93.13 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.11 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.05 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 92.94 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.91 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 92.91 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 92.87 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.84 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 92.84 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.8 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.72 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.63 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.63 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.62 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.62 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.52 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.52 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 92.5 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 92.5 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 92.46 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 92.45 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 92.45 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.42 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 92.42 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.39 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 92.37 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.36 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.35 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.34 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.26 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 92.25 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.25 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.21 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 92.21 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.19 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.18 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 92.13 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 92.03 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 91.95 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.93 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 91.88 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 91.83 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.83 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 91.82 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 91.8 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 91.69 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 91.59 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.58 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 91.57 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 91.47 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 91.45 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 91.44 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.39 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 91.39 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.38 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 91.37 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 91.34 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.27 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 91.24 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 91.2 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 91.13 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 91.07 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 91.07 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.06 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 91.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.99 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 90.91 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 90.81 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 90.79 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.65 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 90.59 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 90.59 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 90.56 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.55 | |
| 3l5o_A | 270 | Uncharacterized protein from DUF364 family; RARE m | 90.37 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.33 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 90.28 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 90.26 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 90.24 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.2 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 89.95 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.88 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 89.85 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.71 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 89.63 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 89.61 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 89.58 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 89.56 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 89.55 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 89.52 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.49 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 89.49 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 89.48 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 89.43 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 89.33 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 89.32 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 89.32 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 89.24 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 89.2 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 89.15 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 89.07 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 89.06 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 89.03 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-81 Score=649.12 Aligned_cols=345 Identities=85% Similarity=1.301 Sum_probs=323.9
Q ss_pred CccccccccchhhHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEe
Q 014863 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (417)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~ 147 (417)
.+++++|||++|.+++++|+|+.|++|++|+|+|++++++|+|||||+|||+|+||+++|++|+++++++|+|++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~ 90 (525)
T 3fr7_A 11 AMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 90 (525)
T ss_dssp ----CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred cCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCC
Q 014863 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (417)
Q Consensus 148 r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~ 227 (417)
+.++++++.|.+.|+...++++.+++|++++||+|||++||+.+.+++++|+|+|++|++|+++|||+++++++.++.+|
T Consensus 91 r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p 170 (525)
T 3fr7_A 91 RKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFP 170 (525)
T ss_dssp CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCC
T ss_pred CCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCC
Confidence 98888899999999984223346899999999999999999999999999999999999999999999998876567889
Q ss_pred CCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccc
Q 014863 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (417)
Q Consensus 228 ~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqt 307 (417)
++++|||+|||+|+++||++|++|+++||+|++++|++++|+++++++++++|+.++|+.++++|+|++|+++|+|++|+
T Consensus 171 ~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqt 250 (525)
T 3fr7_A 171 KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250 (525)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHH
Q 014863 308 ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (417)
Q Consensus 308 vL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~m~~ 387 (417)
+|||++|++++++||++|++||+|++||++|+|+++|+|+|||+++|+.+|+++||+|++++||++|+..+.|+|++|+|
T Consensus 251 vLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel~~~i~~li~e~G~~~m~~~~S~ta~~~~~~~~~~~~~~~~~~m~~ 330 (525)
T 3fr7_A 251 ILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYE 330 (525)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCcHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999988778899999999
Q ss_pred HHHhhhcchhHHHHHHcCCcc-cccc
Q 014863 388 CYEDVAAGSEIRSVVLAGRRF-YVSS 412 (417)
Q Consensus 388 ~~~~v~~g~~~~~~~~~~~~~-~~~~ 412 (417)
||++||+|+|+|+||++|+|+ ||..
T Consensus 331 ~~~~i~~G~~~~~~~~~~~~~~~~~~ 356 (525)
T 3fr7_A 331 CYEDVASGSEIRSVVLAGRRFYEKEG 356 (525)
T ss_dssp HHHHHHHSHHHHHHHHHHHTTSCBTT
T ss_pred HHHHHhCCHHHHHHHHhcCccchhcc
Confidence 999999999999999998865 5543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=598.43 Aligned_cols=314 Identities=26% Similarity=0.385 Sum_probs=295.5
Q ss_pred ccccccchhhHhhhh-----hcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE
Q 014863 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv 145 (417)
.|||||++||+|+.+ ||+++| |.++++.|+| |||+|||||+||+++|+||||| |++|+|
T Consensus 2 ~ny~n~l~~~~~~~~~~~c~~m~~~e---------F~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~V 65 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLGKCRFMGRDE---------FADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISY 65 (491)
T ss_dssp CCTGGGSCHHHHHHHHTCCEECCGGG---------GTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEE
T ss_pred cchhccccHHHHHHHhccceeccHHH---------hcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEE
Confidence 599999999999988 888888 9999999999 9999999999999999999999 999999
Q ss_pred EecCCc-----hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhh
Q 014863 146 GLRKGS-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (417)
Q Consensus 146 g~r~~~-----~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~ 220 (417)
++|+++ +||++|+++||. +.+++|++++||+|++++||..|.++|++|.|+|++|++|.++|||++++.
T Consensus 66 glr~~s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~- 139 (491)
T 3ulk_A 66 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEV- 139 (491)
T ss_dssp EECHHHHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTT-
T ss_pred EeCCCCcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCccccccc-
Confidence 999544 899999999999 578999999999999999999999999999999999999999999999875
Q ss_pred ccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 014863 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (417)
Q Consensus 221 ~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~--qd~sgea~e~a~al~~aiG~~~--~iett~~~ 296 (417)
++.||+|+|||+|+||+||+.||++|++| +|+|++|+|| ||++|++++++++|+.++|++| +++|||++
T Consensus 140 --~i~pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~e 212 (491)
T 3ulk_A 140 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 212 (491)
T ss_dssp --CCCCCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHH
T ss_pred --ccccCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHH
Confidence 46999999999999999999999999996 8999999997 8999999999999999999986 79999999
Q ss_pred hhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014863 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 297 E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~ 376 (417)
|+++||||||++|||+++++++++||++|++||+|++|++++.++++ +|+|||+++|+.+|+++|| +|++||++...
T Consensus 213 EtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~~~~~~e~k-lIvdli~egGi~~M~~siS--~TAe~G~~~~~ 289 (491)
T 3ulk_A 213 EVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKLRAYALS 289 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-HHHHHHHhCCHHHHHHhcC--chhhccchhhh
Confidence 99999999999999999999999999999999999999999888887 9999999999999999999 78899998443
Q ss_pred -c-ChhHHHHHHHHHHhhhcchhHHHHHHcCCcccccccccc
Q 014863 377 -S-YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 377 -~-~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
+ .+..++.|+++|++||+|+|+|+|+.+++..+++...||
T Consensus 290 ~~~~~~~k~~~~~~l~~I~sG~Fa~~~~~e~~~g~~~l~~~R 331 (491)
T 3ulk_A 290 EQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWR 331 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHcCChhHHHHH
Confidence 3 445678999999999999999999999999998887776
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=324.72 Aligned_cols=281 Identities=29% Similarity=0.515 Sum_probs=248.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+++ +||+|||+|+||.++|++|+++ |++|++++++.+++++.+.+.|+.. . +.++++++||+|+++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 46788 8999999999999999999999 9998888887666678888899874 3 888999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 186 vpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
+|+..+.++++ ++.+++++|++|++++|+++ .... +.++.+++|+++||++|++.++++|+.| .|.+++++
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999999998 99999999999999999987 4433 3346788999999999999999999975 89999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
++++.++++.+.+..|+..+|..+ ++++++.+|++.|+|+++++|||++|+++...++.+++.|+++++||++++++.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~ 231 (338)
T 1np3_A 152 IYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHEL 231 (338)
T ss_dssp EEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHH
Confidence 999999999999999999999755 788899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhhcchhHHHHHHcCCccc
Q 014863 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409 (417)
Q Consensus 343 ~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~ 409 (417)
. .+.++|..+|+..|+...+ +.+.|++.... + .+..++.|+++++.|++|+|+++|+.+++...
T Consensus 232 ~-~~~~~~~~gg~~~~r~a~s--~p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~r 298 (338)
T 1np3_A 232 K-LIVDLMYEGGIANMNYSIS--NNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANY 298 (338)
T ss_dssp H-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTS
T ss_pred H-HHHHHHHhcCHHHHHHhcC--CHHHHhhhhcCCccccHHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Confidence 7 9999999999988877666 56689997543 2 35678899999999999999999999776543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-32 Score=261.75 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=189.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+.+.|+.. ..++.++++++|+||+++||
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7899999999999999999999 87 88888777555444444458875 56889999999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 189 AAQADNYEKIFSC-MKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 189 ~a~~~Vl~eI~p~-Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
+...+++++|.++ ++++++ |++++|+++..++. .++.+.+++++|||+|... |.|++. +++.
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v------------~~g~~~-l~~~ 137 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV------------RAGATG-LFAN 137 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG------------TCEEEE-EECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh------------cCccEE-EEeC
Confidence 9999999999998 888865 55889999887765 5566779999999999887 578886 5668
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
.+++.++.+.+..++..+|....+ .+| ++++..++++|++|+ +++++.+.+++.|+++++|++++.|++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v----~~E---~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~ 210 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWV----SSE---DQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTV 210 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEEC----SSH---HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEE----CCH---HHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999999999999963111 133 567788999999999 579999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCch
Q 014863 343 TGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 343 ~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
. |+++|+.++|. ..|+|+||+|.
T Consensus 211 ~-G~a~~~~~~~~~p~~l~~~v~spg 235 (280)
T 3tri_A 211 L-GAARMALETEQSVVQLRQFVTSPG 235 (280)
T ss_dssp H-HHHHHHHTCSSCHHHHHHHHCCTT
T ss_pred H-HHHHHHHhcCCCHHHHHHhccCCC
Confidence 9 99999999997 89999999995
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=240.46 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=173.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+.+.|+.. ..++.|+++++|+||+++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999999 87 88887776444334444568875 5789999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+...++++++.++++++++|+ +++|+++..++. .++.+.+++++|||.|... |.|... +++.
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g~~~-~~~~ 136 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV------------GEGMSA-LCPN 136 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG------------TCEEEE-EEEC
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH------------cCceEE-EEeC
Confidence 9999999999999999998754 889998776655 4456778999999999876 467765 6667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
...+.+..+.++.++..+|.. +.. .| +.++..+.++|++|+ ++|++.+.+++.|+++++|++.+.+++
T Consensus 137 ~~~~~~~~~~~~~l~~~~G~~--~~~---~e---~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~ 208 (247)
T 3gt0_A 137 EMVTEKDLEDVLNIFNSFGQT--EIV---SE---KLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAV 208 (247)
T ss_dssp TTCCHHHHHHHHHHHGGGEEE--EEC---CG---GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCE--EEe---CH---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788999999999999999963 222 33 456677889999998 688999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
. ++++|+.++|. ..|+|+||||.-
T Consensus 209 ~-gs~~~~~~~~~~p~~l~~~v~spgG 234 (247)
T 3gt0_A 209 L-GSAKMVLETGIHPGELKDMVCSPGG 234 (247)
T ss_dssp H-HHHHHHHHSCC--------------
T ss_pred H-HHHHHHHHcCCCHHHHHHhcCCCCc
Confidence 9 99999999997 999999999963
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=210.08 Aligned_cols=222 Identities=14% Similarity=0.103 Sum_probs=177.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|||+|||+|+||.++|.+|.++ | ++|++++|..+ ...+...+.|+.. ..++.++++++|+||++|
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 68888777643 2455556678875 467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe-ccchhhhhhccc-cCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a-~G~~i~~~~~~~-i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
||+...++++++.+.++++++|+++ .|+....+.+.. -.++ +.+|++.||++|... +.|.. +++
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~-~~~vv~~~p~~p~~~------------~~g~~-v~~ 158 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRP-APRVIRCMTNTPVVV------------REGAT-VYA 158 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSS-CCEEEEEECCGGGGG------------TCEEE-EEE
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCC-CCeEEEEeCCcHHHH------------cCCeE-EEE
Confidence 9999999999999999999987755 688765443200 0112 458999999999876 35664 455
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
...+.+.+..+.+..++..+|.. +.. .| +.++..+.++|++|+ +++++.+.+++.|+++++++.++.+
T Consensus 159 ~g~~~~~~~~~~v~~ll~~~G~~--~~~---~e---~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~ 230 (322)
T 2izz_A 159 TGTHAQVEDGRLMEQLLSSVGFC--TEV---EE---DLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQ 230 (322)
T ss_dssp ECTTCCHHHHHHHHHHHHTTEEE--EEC---CG---GGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhCCCE--EEe---CH---HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56677789999999999999953 111 23 667778889999888 5889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 341 ~l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
++. +.++++.++|. ..+++.+++|.
T Consensus 231 ~~~-g~~~~~~~~~~~p~~l~~~v~sp~ 257 (322)
T 2izz_A 231 ALL-GAAKMLLHSEQHPGQLKDNVSSPG 257 (322)
T ss_dssp HHH-HHHHHHHHCSSCHHHHHHHHCCTT
T ss_pred HHH-HHHHHHHhcCCCHHHHHHhCCCCC
Confidence 998 99999988764 67899998884
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=187.41 Aligned_cols=213 Identities=13% Similarity=0.186 Sum_probs=168.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
+||+|||+|+||.+++.+|.++ | ++|.+++|+.++ .|+.. ..++.++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 6899999999999999999998 8 678877776443 57764 4678899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
++...++++++.++++++.+|+++.|+....+.+ .++.+.++++++|+.|... +.| ..+++...
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV------------GEG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG------------TCE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH------------cCC-eEEEEeCC
Confidence 9999999999999995555677889998766654 3455557889999998766 467 55566676
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~ 343 (417)
+.+.+..+.+..++..+|. ++.. .+ +.++..+.++++.|+ +++++.+.+++.|++++.++..+.+.+.
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~~---~~---~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~ 203 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHEI---KE---KDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIK 203 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEEC---CG---GGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC--EEEe---CH---HHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6788999999999999994 3322 22 456666888887777 6788888899999999999999999887
Q ss_pred HHHHHHHHHhcH--HHHHhcccCch
Q 014863 344 GIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 344 ~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
++.++..+++. ..++|.+++|.
T Consensus 204 -~~~~~~~~~~~~~~~l~d~~~~~~ 227 (262)
T 2rcy_A 204 -GSVEMVKKSDQPVQQLKDNIVSPG 227 (262)
T ss_dssp -HHHHHHHHCSSCHHHHHHHHCCTT
T ss_pred -HHHHHHHhcCCCHHHHHHhcCCCC
Confidence 88888876444 55667677663
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=186.03 Aligned_cols=217 Identities=12% Similarity=0.162 Sum_probs=171.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||+|||+|+||.+++.+|.+. | ++|.+++|+.++..+.+...|+.. ..+..+++ ++|+||+++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999999 9 888877766444333333458774 45677888 9999999999888
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-ccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
..++++++.+ + +++|++. .|+....+.+ .++.+.++++.+|+.|... +.|... +.+..+.
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~------------~~g~~~-i~~~~~~ 130 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH------------cCceEE-EEcCCCC
Confidence 8888887766 5 8887766 7887765654 4455678999999988776 356765 4556666
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~ 345 (417)
+.+..+.+..++..+|.. + .. . ..|.++..+++.|+.|+ +++++.+.+++.|++++.++..+.+++. +
T Consensus 131 ~~~~~~~~~~l~~~~g~~-~-~~---~--~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~-~ 202 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLT-V-WL---D--DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFK-G 202 (263)
T ss_dssp CHHHHHHHHHHHHTTEEE-E-EC---S--STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHhCCCE-E-Ee---C--ChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-H
Confidence 888999999999999953 1 11 2 12567788899888887 5777888999999999999999999988 9
Q ss_pred HHHHHHHhc--HHHHHhcccCch
Q 014863 346 ISKIISTQG--MLAVYNSFSGED 366 (417)
Q Consensus 346 ~~~li~e~G--~~~l~~~vs~~~ 366 (417)
..+++.++| ...+++.+++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
T 1yqg_A 203 AVALAEQTGEDFEKLQKNVTSKG 225 (263)
T ss_dssp HHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHhcCCCHHHHHHhcCCCC
Confidence 999999999 678899998884
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-22 Score=186.50 Aligned_cols=217 Identities=16% Similarity=0.146 Sum_probs=169.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||+|||+|+||.+++.+|.+. |++|.+++++.++..+.+.+.|+.. ..+++++++++|+|++++|+..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHh
Confidence 57999999999999999999988 8888777665443333444457764 5688899999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-ccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
+.+++.++ ++|++|+.. .|++...+.+ .++.+.++++.+|+.|... +.|... +.+....
T Consensus 73 ~~~v~~~l----~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~------------~~g~~~-i~~~~~~ 132 (259)
T 2ahr_A 73 FETVLKPL----HFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALV 132 (259)
T ss_dssp HHHHHTTS----CCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTC
T ss_pred HHHHHHHh----ccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH------------cCceEE-EEcCCCC
Confidence 87777654 478777655 6787665554 3345568999999988776 356554 5566667
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~ 345 (417)
+.+..+.+..++..+|. ++.. .+ +.++..+.|+|+.|+ +++++.+.+++.|+++++++..+.+++. +
T Consensus 133 ~~~~~~~~~~ll~~~G~--~~~~---~~---~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~-~ 203 (259)
T 2ahr_A 133 SQELQARVRDLTDSFGS--TFDI---SE---KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVL-A 203 (259)
T ss_dssp CHHHHHHHHHHHHTTEE--EEEC---CG---GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHhCCC--EEEe---cH---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-H
Confidence 88999999999999993 3333 22 346667888888777 6788999999999999999999999998 9
Q ss_pred HHHHHHHhc--HHHHHhcccCch
Q 014863 346 ISKIISTQG--MLAVYNSFSGED 366 (417)
Q Consensus 346 ~~~li~e~G--~~~l~~~vs~~~ 366 (417)
..+++.++| ...+++.+++|.
T Consensus 204 ~~~~~~~~~~~p~~l~~~~~~p~ 226 (259)
T 2ahr_A 204 SASNLKTSSQSPHDFIDAICSPG 226 (259)
T ss_dssp HHHHHHHSSSCHHHHHHHHCCTT
T ss_pred HHHHHHhcCCCHHHHHHhCCCCC
Confidence 999999888 577779888875
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=178.37 Aligned_cols=211 Identities=14% Similarity=0.087 Sum_probs=153.9
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
|+||+|||+ |+||.+++++|.+. |++|++++|+ .+..+.+.+.|+. ..+..++++++|+||+++|++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIA-PEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCS-HHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 479999999 99999999999999 9998876665 4444555557755 346778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe-ccchhhhhhccccCCCCCCcEEEeccCCchhhH----HHHHhhcccccCCC------
Q 014863 190 AQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------ 258 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v----r~ly~~G~e~~G~G------ 258 (417)
...++++++.++++++++|++. .|..+..+.+ . .++.+|++.||+.|+... ... +.|
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~--------~~g~l~~~~ 146 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAA--------RTDYHGGIA 146 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHH--------HTCSSSSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhh--------ccCcccccc
Confidence 9999999999999999987754 4555554432 2 346789999999987610 001 245
Q ss_pred -ceEEEeecCCCCHHHHHHHHHHHHHhCCC--cccccchhhhhhhhccccccccc-chH----HHHHHHHHHHHHHcCCC
Q 014863 259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGILL-GAV----HGIVESLFRRFTENGMN 330 (417)
Q Consensus 259 -v~~liav~qd~sgea~e~a~al~~aiG~~--~~iett~~~E~~~dlfgeqtvL~-G~~----~a~iea~~~~~v~~Gl~ 330 (417)
.+.+++.. ..+.+..+.+..++..+|.+ +++... +...|.+. ..++ |+. -+++|++.+.+++.|++
T Consensus 147 ~~~~i~~~~-~~~~~~~~~v~~l~~~~G~~~~~~~~v~---~~~~~~~~--~a~~n~~~~~~~~~~~eal~~~~~~~Gl~ 220 (286)
T 3c24_A 147 KQAIVCALM-QGPEEHYAIGADICETMWSPVTRTHRVT---TEQLAILE--PGLSEMVAMPFVETMVHAVDECADRYGID 220 (286)
T ss_dssp CEEEEEEEE-ESCTHHHHHHHHHHHHHTCSEEEEEECC---HHHHHHHT--THHHHTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cceeeeecc-CCCHHHHHHHHHHHHHhcCCcceEEEeC---hhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34433323 35778999999999999973 334332 33344442 2232 233 33788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014863 331 EDLAYKNTVECITGIISKIIST 352 (417)
Q Consensus 331 ~e~A~~~~~~~l~~~~~~li~e 352 (417)
+++++.++.+++. ++++++.+
T Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~ 241 (286)
T 3c24_A 221 RQAALDFMIGHLN-VEIAMWFG 241 (286)
T ss_dssp HHHHHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHHHH-HHHHHHHh
Confidence 9999999999988 77777755
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=182.07 Aligned_cols=260 Identities=12% Similarity=0.046 Sum_probs=180.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEeec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViLavp 187 (417)
|+||+|||+|+||.++|++|++. |+ +|+++++. .+..+.+.+.|+.. ....+++++++ ++|+|++++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDIN-PESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeCC-HHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 58999999999999999999998 87 77765554 44566677778741 11357788899 9999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCC------chhhHHHHHhhcccccCCC
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~e~~G~G 258 (417)
++...++++++.++++++++|+++++.+. ..+.+ .+++ .++..||.. |+... ...+.|
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~~gp~~a~--------~~l~~g 138 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEKSGVEYSL--------DNLYEG 138 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSCCSGGGCC--------SSTTTT
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCccCChhhhh--------hHHhCC
Confidence 99999999999999999999998877653 22332 2232 266666632 22221 112357
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHH-HHHHHHHHHHcCCCHHHHHHH
Q 014863 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI-VESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 259 v~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~-iea~~~~~v~~Gl~~e~A~~~ 337 (417)
.+++++++...+.+..+.+..++..+|.. ++.++ + ...++.+.++|.+|++ .-++.+.+.+.|++++.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~~-~~~~~---~---~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 211 (281)
T 2g5c_A 139 KKVILTPTKKTDKKRLKLVKRVWEDVGGV-VEYMS---P---ELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKY 211 (281)
T ss_dssp CEEEECCCSSSCHHHHHHHHHHHHHTTCE-EEECC---H---HHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGC
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhh
Confidence 88889988888899999999999999973 33332 1 1224568889999996 467788888889999999999
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHHHHHhhhcchh--HHHHHHcCC
Q 014863 338 TVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSE--IRSVVLAGR 406 (417)
Q Consensus 338 ~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~g~~--~~~~~~~~~ 406 (417)
+.+++. +++++.. .-...+++.+++|...-... -....+.|.++-+.|++|++ .++++.+.+
T Consensus 212 ~~~~~~-~~~r~~~-~~p~~~~~~~~sn~~~~~~~-----l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~ 275 (281)
T 2g5c_A 212 PGGGFK-DFTRIAK-SDPIMWRDIFLENKENVMKA-----IEGFEKSLNHLKELIVREAEEELVEYLKEVK 275 (281)
T ss_dssp CTTTGG-GC---CC-SCHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHH-HHhHHhc-CCHHHHHHHHHHCHHHHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888 7777764 44566777777665321111 12233445556666666664 466665543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=180.61 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=166.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
++||+|||+|+||.++|++|.+. |.|++|+++++. ....+.+.+.|... ....+++++++++|+||+++|++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNRS-DRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSS-HHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcCC-HHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 48999999999999999999887 123577665554 44456666677631 014577788999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccchh---hhhhccccCCCC-CCcEEEeccC------CchhhHHHHHhhcccccCCCc
Q 014863 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSMGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 191 ~~~Vl~eI~p~-Lk~GaiL~~a~G~~i---~~~~~~~i~~~~-di~VI~v~Pn------~pg~~vr~ly~~G~e~~G~Gv 259 (417)
+.++++++.++ ++++++|+++++.+. ..+.+ .+++ .++++..||. +|+....++ ..|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l--------~~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNL--------FENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTT--------TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHH--------hCCC
Confidence 99999999999 999999988877654 33333 3333 6788888886 554432222 2467
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
+.+++++...+.+..+.+..++..+|.. ++.++.+++ |.. .+.++|+.|.+.-++.+.+...|++++.++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~~~~~~~~---d~~--~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~ 221 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHAR-YVEIDAAEH---DCV--TSQISHFPHIIASSLMKQAGDFSESHEMTKHFAA 221 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCE-EEECCHHHH---HHH--HHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH---HHH--HHHHhhHHHHHHHHHHHHHHhcccchhhHHhhcc
Confidence 7778888878889999999999999963 333332222 321 2556777777655566666667888899999999
Q ss_pred HHHHHHHHHHHHHhcHHHHHhcccCchh
Q 014863 340 ECITGIISKIISTQGMLAVYNSFSGEDK 367 (417)
Q Consensus 340 ~~l~~~~~~li~e~G~~~l~~~vs~~~~ 367 (417)
+++. +++++. ..-...++|.+++|..
T Consensus 222 ~~~~-~~~rla-~~~p~~~~~~~~~n~~ 247 (290)
T 3b1f_A 222 GGFR-DMTRIA-ESEPGMWTSILLTNQE 247 (290)
T ss_dssp HHHH-HTTGGG-GSCHHHHHHHHHHSHH
T ss_pred ccHH-hhhhhh-cCCHHHHHHHHHHCHH
Confidence 9998 777777 3344666888877653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=183.46 Aligned_cols=209 Identities=13% Similarity=0.027 Sum_probs=153.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHh-hhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E-av~~ADiViLavpd 188 (417)
+||+|||+|+||.++|++|++. |+ +|+++++. ....+.+.+.|+.. ....++++ ++++||+||+|+|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr~-~~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDIN-PESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSC-HHHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEECC-HHHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 8999999999999999999999 98 77665554 55677788888741 12457788 89999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
....++++++.++++++++|+++++++ +..+.+ .+|. ++|..||...... ..+...+.....|..+++++
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G~e~--sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK--SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCCCCC--CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccCCcc--cchhhhhhhhhcCCEEEEEe
Confidence 999999999999999999999998875 333333 2233 8999999553211 00001111223567888998
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECIT 343 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~i-ea~~~~~v~~Gl~~e~A~~~~~~~l~ 343 (417)
++..+.++.+.++.++..+|. +++..+.+++ | ..+.+.+.+|.++ -++.+.+.+.+.+.+++..++.....
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G~-~v~~~~~~~h---D---~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~fr 249 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVGG-VVEYMSPELH---D---YVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFK 249 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTTC-EEEECCHHHH---H---HHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH---H---HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccHH
Confidence 888899999999999999996 4454544444 3 4466777888855 56677777888777777766655444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=167.98 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=152.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||+||| +|+||.++|++|++. |++|++.++... .+..+++++||+||++||++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7999999 999999999999999 998887765422 135678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
..++++++.++++++++|++++|++...++...-..+ .+++..||.. ++.. . ...|.+++++++. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~~-g~~~-----~----~~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-----A----SMAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-----S----CCTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCCC-CCCc-----h----hhcCCeEEEecCC--C
Confidence 9999999999999999999998886432221000222 5788888842 2210 0 1245677777765 6
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHH----
Q 014863 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECITGI---- 345 (417)
Q Consensus 271 gea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~i-ea~~~~~v~~Gl~~e~A~~~~~~~l~~~---- 345 (417)
.+..+.+..++..+|.. ++.++.+ ..+..+.+++.+|+++ -++.+.+.+.|++++++++++.+.+. +
T Consensus 144 ~~~~~~v~~l~~~~G~~-~~~~~~~------~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~-~~~~~ 215 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGAK-IYQTNAT------EHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYR-LELAM 215 (298)
T ss_dssp GGGTHHHHHHHHHTTCE-EEECCHH------HHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCE-EEECCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHH-HHHHH
Confidence 78889999999999973 3333222 2245578899999864 56667777899999999999999998 6
Q ss_pred HHHHHHHhcHHHHHhcccCch
Q 014863 346 ISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 346 ~~~li~e~G~~~l~~~vs~~~ 366 (417)
++++. ..-...++|.+++|.
T Consensus 216 ~~ria-~~~p~~~~di~~sn~ 235 (298)
T 2pv7_A 216 IGRLF-AQDAELYADIIMDKS 235 (298)
T ss_dssp HHHHH-TSCHHHHHHHHC---
T ss_pred HHHHh-cCCHHHHHHHHHHCH
Confidence 55554 334567788887664
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=173.26 Aligned_cols=204 Identities=12% Similarity=0.080 Sum_probs=147.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc----CCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~----ADiViLavp 187 (417)
+||+|||+|+||.++|++|++. |++|++++++ ....+.+.+.|+.. ..++++++++ +|+||+++|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~-~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYNRS-RSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999999 9988766654 55677888889864 4677777764 799999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
+....++++++.++ ++|++|+++++++.. .+.. .++ +.++|..||...... ..+..+......|.+++++
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~---~~~-~~~~v~~HPmaG~e~--sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKA---RNM-QHRYVGSHPMAGTAN--SGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHH---TTC-GGGEECEEECCSCC---CCGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHH---hCC-CCcEecCCccccccc--cchhhhhhHHhcCCeEEEE
Confidence 99889999999986 899999999988643 3332 333 578999999442110 1122233334467888999
Q ss_pred ecCCCCHH--------HHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHH-HHHHHHHcCCCHHHHH
Q 014863 265 VHQDVDGR--------ATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES-LFRRFTENGMNEDLAY 335 (417)
Q Consensus 265 v~qd~sge--------a~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea-~~~~~v~~Gl~~e~A~ 335 (417)
++...+.+ +++.++.++..+|. +++..+.++| +..+.+.+.+|.++-. +.+.+.+ .++.+.
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga-~v~~~~~~~H------D~~~A~vshlPh~ia~aL~~~~~~---~~~~~~ 220 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGA-EVVPSRVGPH------DAAAARVSHLTHILAETLAIVGDN---GGALSL 220 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTC-EEEECCHHHH------HHHHHHHTHHHHHHHHHHHHHHHH---THHHHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCC-EEEEeCHHHH------HHHHHHHhHHHHHHHHHHHHHhhc---chHHHH
Confidence 98877777 89999999999996 4555544444 3447788888885444 4444322 245555
Q ss_pred HHHHHHHH
Q 014863 336 KNTVECIT 343 (417)
Q Consensus 336 ~~~~~~l~ 343 (417)
.++.....
T Consensus 221 ~laa~gfr 228 (341)
T 3ktd_A 221 SLAAGSYR 228 (341)
T ss_dssp HHCCHHHH
T ss_pred HHccccHH
Confidence 55555444
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-18 Score=160.79 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=163.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||+|||+|+||.+++++|.+. |++|+++++. .+..+.+.+.|... ....+++++ +++|+||+++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 9988776554 44455566777641 114577788 999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCC------chhhHHHHHhhcccccCCCceEEEee
Q 014863 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
.++++++.++++++++|+++++++...++...-.++ +++..||-. |.... .....|.++.+++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~a~--------~~~~~g~~~~~~~ 139 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAE--------ENLFVNAPYVLTP 139 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCC--------TTTTTTCEEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHHHh--------HHHhCCCcEEEec
Confidence 999999999999999988887766432221000222 567777742 22221 1112455677887
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMN--EDLAYKNTVECI 342 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~~Gl~--~e~A~~~~~~~l 342 (417)
....+.+..+.+..++..+|.. ++.. .+ +..++.+.+++.+|. +.-++.+.+++.|++ ++.++.++.+.+
T Consensus 140 ~~~~~~~~~~~v~~l~~~~g~~-~~~~---~~---~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~ 212 (279)
T 2f1k_A 140 TEYTDPEQLACLRSVLEPLGVK-IYLC---TP---ADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGF 212 (279)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCE-EEEC---CH---HHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEc---CH---HHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcc
Confidence 7777889999999999999963 2222 22 234566788888877 566788899999998 899999999999
Q ss_pred HHHHHHHHHHhcHHHHHhcccCch
Q 014863 343 TGIISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 343 ~~~~~~li~e~G~~~l~~~vs~~~ 366 (417)
. +++++. ..-...++|.|++|.
T Consensus 213 ~-~~~r~~-~~~p~~~~~~~~s~~ 234 (279)
T 2f1k_A 213 R-DTSRVG-GGNPELGTMMATYNQ 234 (279)
T ss_dssp H-HHHTGG-GSCHHHHHHHHHHSH
T ss_pred c-chhccc-CCCHHHHHHHHHHhH
Confidence 8 777776 344577888888774
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-17 Score=155.54 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=135.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||+|||+|+||.+++++|.+. ++|+ +++++..+..+.+...|. . ..+++++++++|+||+++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999998643 3453 555553333333345565 3 4577788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEec-cchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~-G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
+.++++++. +++++|+.++ ++....++. ........+..+|++|.... .+ .+++..++.
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~p~~~~~g~~~~~~--~~--------~~~~~~~~~---- 130 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSSLEKALE--MK--------DQIVFGLEG---- 130 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC--CTTGGG--CG--------GGCCEEECC----
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH---hhccccchhhhcCCCchhHH--Hh--------CCCeEEEEe----
Confidence 888887765 6788777555 555554432 11000111223455454331 01 346554443
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECITGIISK 348 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~ 348 (417)
+.+..+.++.++..+|.. ++.. .+...+.++..+++++..+. ++..+.+.+++.|+++++|+ ..+.+. +.++
T Consensus 131 ~~~~~~~~~~l~~~lG~~-~~~v---~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~--~~~l~~-~~~~ 203 (276)
T 2i76_A 131 DERGLPIVKKIAEEISGK-YFVI---PSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELL--IHTLMK-GVAD 203 (276)
T ss_dssp CTTTHHHHHHHHHHHCSC-EEEC---CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHH--HHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHhCCC-EEEE---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHH-HHHH
Confidence 345688899999999963 3333 22233456666777777666 44445577888999999997 777787 8999
Q ss_pred HHHHhcHHHHHhcccCch
Q 014863 349 IISTQGMLAVYNSFSGED 366 (417)
Q Consensus 349 li~e~G~~~l~~~vs~~~ 366 (417)
++.+.| -++.+++|.
T Consensus 204 ~~~~~g---p~~~~tgP~ 218 (276)
T 2i76_A 204 NIKKMR---VECSLTGPV 218 (276)
T ss_dssp HHHHSC---GGGGCCSHH
T ss_pred HHHhcC---hHhhCCCCc
Confidence 999999 388899885
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=141.17 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=139.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+.+ +||+|||+|.||.+++++|.+. |++ |.++++..++..+.+...|+.. ..+++++++++|+|++++
T Consensus 8 ~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 8 IED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEECC
T ss_pred CCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEec
Confidence 445 7899999999999999999998 987 6666655333333334447764 567888899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe-ccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a-~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
|+..+.++++++.+.+++|++|++. .|+....+.+ .++. .-..||-.|-... ......+.+.++
T Consensus 77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~---~~~~~~~~~~~g~-------~~~~~~~~~~~v-- 141 (266)
T 3d1l_A 77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH---YGVFYPMQTFSKQ-------REVDFKEIPFFI-- 141 (266)
T ss_dssp CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS---EEEEEECCCC----------CCCCCTTCCEEE--
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh---ccCcCCceecCCC-------chhhcCCCeEEE--
Confidence 9999889999999999999987755 4565544432 2222 1124554441110 000123455544
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR-FTENGMNEDLAYKNTVECITG 344 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~-~v~~Gl~~e~A~~~~~~~l~~ 344 (417)
...+.+..+.+..++..+|.. ++.. .+.....++..+.+++..++.+-++.+. +.+.|+++++++.++.+++.
T Consensus 142 -~~~~~~~~~~~~~l~~~~g~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl~~~~~~~l~~~~~~- 215 (266)
T 3d1l_A 142 -EASSTEDAAFLKAIASTLSNR-VYDA---DSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETAR- 215 (266)
T ss_dssp -EESSHHHHHHHHHHHHTTCSC-EEEC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHH-
T ss_pred -ecCCHHHHHHHHHHHHhcCCc-EEEe---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 233678899999999999963 2222 1211124667777887777633333333 35899999999998888877
Q ss_pred HHHHH
Q 014863 345 IISKI 349 (417)
Q Consensus 345 ~~~~l 349 (417)
++.++
T Consensus 216 ~~~~~ 220 (266)
T 3d1l_A 216 KVHEL 220 (266)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-17 Score=166.32 Aligned_cols=102 Identities=19% Similarity=0.356 Sum_probs=89.5
Q ss_pred hcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChh
Q 014863 301 DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP 380 (417)
Q Consensus 301 dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~ 380 (417)
..|+....+++++.|++|++||++|++||+||.||++|+|+++ +|++||+++|+.+|+++|| ||+|||+|.. +..
T Consensus 353 e~f~~Gilmva~v~a~ve~~FEtlveaGy~pE~AYfE~LHElk-LIvdli~e~gl~~M~~sIS--dTAEYG~yl~--~~~ 427 (491)
T 3ulk_A 353 EYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLF--SYA 427 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHTTGGGHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHH--HHH
T ss_pred cchhhhhHHHHHHHHHHhhhHHHHHHcCCcHHHHHHHHHhHHH-HHHHHHHHhhHHHHHhHhh--hHhhhcCEEe--cHH
Confidence 3455554458889999999999999999999999999999999 9999999999999999999 8999999943 356
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHcCCcc
Q 014863 381 CMEILYECYEDVAAGSEIRSVVLAGRRF 408 (417)
Q Consensus 381 ~~~~m~~~~~~v~~g~~~~~~~~~~~~~ 408 (417)
+++.|++++++||+|.|+|++ .+++..
T Consensus 428 ~k~~mk~~l~~Iq~g~fak~~-~e~~~g 454 (491)
T 3ulk_A 428 CVPLLKPFMAELQPGDLGKAI-PEGAVD 454 (491)
T ss_dssp HHHHTHHHHHTCCTTSSSSCC-CCCCCC
T ss_pred HHHHHHHHHHHccCChHhhhh-hhccCC
Confidence 788999999999999999984 555543
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=146.13 Aligned_cols=194 Identities=18% Similarity=0.257 Sum_probs=124.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||||||+|+||.+||+||.+. |++|.+++|+.+ ..+...+.|... +.++.|+++++|+||+|+|+..
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 78999999999999999999999 999998887744 456666789886 7899999999999999999887
Q ss_pred HH-HHHHH---HHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEecc-C-CchhhHHHHHhhcccccCCCceE
Q 014863 191 QA-DNYEK---IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCP-K-GMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 191 ~~-~Vl~e---I~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~P-n-~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
+. +|+.. +.+.+++|++|++.+-.... .+.+ ..-..++.++- +| . +|... +. |--.
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~~A-----~~-------G~L~ 136 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTAGA-----AA-------GTLT 136 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHHH-----HH-------TCEE
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHHHH-----Hh-------CCEE
Confidence 75 57753 88999999999988765422 1211 11134666653 33 1 11111 12 3323
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
|-+.. +.++.+.++-++..+|.. ++..- .-.=....+ --+.++.+...++.|+ +..+.+.|++++..+.
T Consensus 137 -imvGG--~~~~~~~~~p~l~~~g~~-i~~~G~~G~g~~~Kl-~~N~l~~~~~~a~aEa-~~la~~~Gld~~~~~~ 206 (300)
T 3obb_A 137 -FMVGG--DAEALEKARPLFEAMGRN-IFHAGPDGAGQVAKV-CNNQLLAVLMIGTAEA-MALGVANGLEAKVLAE 206 (300)
T ss_dssp -EEEES--CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHTTCCHHHHHH
T ss_pred -EEEeC--CHHHHHHHHHHHHHhCCC-EEEeCCccHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHH
Confidence 22344 578999999999999953 11110 000000000 0112222223333443 4567899999987665
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=138.80 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=111.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch--------------hHHHHHHcCceecCCCcC
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTLG 170 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~--------------s~~~A~~~G~~~~d~~~~ 170 (417)
...+.+ +||+|||+|+||.++|++|.+. |++|++++|+.++ ..+.+.+.|... ..
T Consensus 14 ~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 82 (245)
T 3dtt_A 14 NLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----LA 82 (245)
T ss_dssp -----C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----EE
T ss_pred ccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----cc
Confidence 467888 9999999999999999999999 9999888876443 122222334332 46
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHH-HhcCCCCcEEEEec-cc----------------h-hhhhhccccCCCCCCc
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSMGLDFPKNIG 231 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI-~p~Lk~GaiL~~a~-G~----------------~-i~~~~~~~i~~~~di~ 231 (417)
+++|++++||+||+++|++.+.+++.++ .+.+ +|++|++++ |+ . ...+++ .+| +.+
T Consensus 83 ~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~-~~~ 157 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFP-EAK 157 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HST-TSE
T ss_pred CHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCC-CCe
Confidence 7889999999999999999999999888 7887 888887665 22 1 234443 445 469
Q ss_pred EEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 232 VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
||+.+|+.++++....-.. -.|-..++.... +.++.+.+..++..+|..
T Consensus 158 vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~ 206 (245)
T 3dtt_A 158 VVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQ 206 (245)
T ss_dssp EEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCC
T ss_pred EEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCC
Confidence 9999999999985211000 011222222222 678999999999999964
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-14 Score=135.16 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=143.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-----------C--------------ceec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--------------FTEE 165 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------G--------------~~~~ 165 (417)
|+||+|||+|+||.++|+.|..+ |++|++++++ .+..+.+.+. | +..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~- 75 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDIN-TDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY- 75 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-
Confidence 47999999999999999999999 9998887665 3334444332 2 222
Q ss_pred CCCcCCHHhhhccCCeEEEeecch--hHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~--a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..++++++++||+||+++|++ ...++++++.++++++++|+ .++++.+..+.. .++...+++.+||..|..
T Consensus 76 ---~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~ 149 (283)
T 4e12_A 76 ---SDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVW 149 (283)
T ss_dssp ---ESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTT
T ss_pred ---eCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCcc
Confidence 467888999999999999987 55678999999999999876 567777665543 223345899999998865
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~ 322 (417)
. +-...++++...+.+..+.+..++..+|...+.-. .+ . .-| +..-.+.+++..++.
T Consensus 150 ~--------------~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~---~~-~-~g~----i~nr~~~~~~~ea~~ 206 (283)
T 4e12_A 150 V--------------NNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELK---KE-K-AGY----VLNSLLVPLLDAAAE 206 (283)
T ss_dssp T--------------SCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECS---SC-C-TTT----THHHHHHHHHHHHHH
T ss_pred c--------------CceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEe---cC-C-CCE----EehHHHHHHHHHHHH
Confidence 5 12334667888899999999999999996422110 11 0 111 112223334444556
Q ss_pred HHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHHHh
Q 014863 323 RFTENGMNEDLAYKNTVECIT--GIISKIISTQGMLAVYN 360 (417)
Q Consensus 323 ~~v~~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~l~~ 360 (417)
.+.+.|.++++.....-...- -|--.++-..|++..++
T Consensus 207 l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld~~~~ 246 (283)
T 4e12_A 207 LLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYN 246 (283)
T ss_dssp HHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHHHHHH
Confidence 666667899976553322110 14556666667755544
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=133.96 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
|+||+|||+|+||.++|++|.+. |++|++ ++|..++..+.+.+.|... ..+..++++++|+||+++|++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDvVilavp~~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVELKDALQADVVILAVPYD 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECCHHHHTTSSEEEEESCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccChHHHHhcCCEEEEeCChH
Confidence 47999999999999999999999 998877 5555445445566667653 345566789999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE-Eeccc--------------hhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccc
Q 014863 190 AQADNYEKIFSCMKPNSILG-LSHGF--------------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~-~a~G~--------------~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~ 254 (417)
.+.++++++.+ + ++++|+ .+.|+ ....+++ .+| +.++++++|+.|..... .|...
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~~~~v~~----~g~~~ 162 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFNTLPAAVLA----ADPDK 162 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESCSSCHHHHT----SCSBC
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCCCCCHHHhh----hCccc
Confidence 99999998887 5 577765 44566 3455554 445 56899999999987741 12111
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 255 ~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.+.+...+++ .. +.++.+.+..++..+|..
T Consensus 163 ~~~~~~v~~~-g~--~~~~~~~v~~l~~~~G~~ 192 (220)
T 4huj_A 163 GTGSRVLFLS-GN--HSDANRQVAELISSLGFA 192 (220)
T ss_dssp SSCEEEEEEE-ES--CHHHHHHHHHHHHHTTCE
T ss_pred CCCCeeEEEe-CC--CHHHHHHHHHHHHHhCCC
Confidence 1222333332 22 488999999999999964
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=139.86 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=82.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC-CchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
|+||+|||+|+||.++|++|.+. |+ +|++++++ +.+..+.+.+.|+.. ..+++|++++||+||+++|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCc
Confidence 48999999999999999999999 99 88887775 245567777888875 57899999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
....++++++.+++++|++|++...+.
T Consensus 94 ~~~~~~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 94 QAALEVAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp TTHHHHHHHHGGGCCTTCEEEECCCCC
T ss_pred hhHHHHHHhhHhhcCCCCEEEEcCCCC
Confidence 999999999999999999999887664
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-13 Score=130.51 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=141.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC-------------
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d------------- 166 (417)
|+||+|||+|+||.++|..|.+. |++|++++++.+ ..+.+ .+.|.....
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 58999999999999999999999 999887776533 23322 123321000
Q ss_pred -CCcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
....++++++++||+||+++|++.. .++++++.++++++++|+ .++|+.+..+.. .++..-+++..||+.|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 0145777899999999999998653 468889999999998875 567887766644 233334799999998865
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~ 322 (417)
. +..+ .+......+.+..+.+..++..+|... +.. .+. .-| +..-.+.+++.-++.
T Consensus 165 ~------------~~~~--~i~~g~~~~~e~~~~~~~l~~~~G~~~-v~~---~~~--~g~----i~nr~l~~~~~Ea~~ 220 (302)
T 1f0y_A 165 V------------MKLV--EVIKTPMTSQKTFESLVDFSKALGKHP-VSC---KDT--PGF----IVNRLLVPYLMEAIR 220 (302)
T ss_dssp T------------CCEE--EEECCTTCCHHHHHHHHHHHHHTTCEE-EEE---CSC--TTT----THHHHHHHHHHHHHH
T ss_pred c------------CceE--EEeCCCCCCHHHHHHHHHHHHHcCCce-EEe---cCc--ccc----cHHHHHHHHHHHHHH
Confidence 4 1223 355677788999999999999999532 211 110 011 112222345655666
Q ss_pred HHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHHHhcc
Q 014863 323 RFTENGMNEDLAYKNTVECIT--GIISKIISTQGMLAVYNSF 362 (417)
Q Consensus 323 ~~v~~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~l~~~v 362 (417)
.+.+.|+++++.........- .|-..+....|++.+++..
T Consensus 221 l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D~~Gld~~~~~~ 262 (302)
T 1f0y_A 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIV 262 (302)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 777777888876543322110 2344555566765555433
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=132.13 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=108.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
+||+|||+|+||.++|++|++. |++|+.+++. ++ +++|| |+++|++++
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9987655441 12 56789 999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecc-chhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 192 ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a~G-~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
.++++++.+++++|++|+++.| .+...+.. ..+.+..+|..||. +|.+..++.. +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm------------------~g~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPI------------------GQDRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEE------------------ETTEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeC------------------CCCceeeeCC---C
Confidence 9999999999999999998765 44333322 11346789999993 1345544433 5
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHH
Q 014863 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 271 gea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~ 324 (417)
.++++.++.|+..+|.. ++..+..++ |.|......+.-+.+++..+.+.+
T Consensus 111 ~~a~~~l~~L~~~lG~~-vv~~~~~~h---d~~~AAvsh~nhLv~L~~~A~~ll 160 (232)
T 3dfu_A 111 ELGETIVGLLVGELGGS-IVEIADDKR---AQLAAALTYAGFLSTLQRDASYFL 160 (232)
T ss_dssp HHHHHHHHHHHHHTTCE-ECCCCGGGH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCE-EEEeCHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999974 444543344 666544433333333444444444
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=131.36 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=105.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC--------CcCCHHhhhc---cC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GS 179 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~--------~~~~~~Eav~---~A 179 (417)
||||+|||+|+||.++|.+|.+. |++|++++|+. +..+...+.|...... ...+..++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWP-AHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 47999999999999999999999 99988776653 3345555557543100 0113344444 89
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEE-eccchh-hhhhccccCCCCCCcEEE---------eccCCchhhHHHHH
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSMGLDFPKNIGVIA---------VCPKGMGPSVRRLY 248 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~-a~G~~i-~~~~~~~i~~~~di~VI~---------v~Pn~pg~~vr~ly 248 (417)
|+||+++|+....++++++.++++++++|++ ..|+.. ..+.+ .+++. +++. ..|+.+...
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~~~~----- 146 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRVKLL----- 146 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEEEEC-----
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEEEEe-----
Confidence 9999999999989999999999999997764 467764 34443 33433 5553 344433222
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.|.+.+ .+....+.+..+.+..++..+|..
T Consensus 147 -------~~g~~~i-~~~~~~~~~~~~~~~~ll~~~g~~ 177 (316)
T 2ew2_A 147 -------GDGEIEL-ENIDPSGKKFALEVVDVFQKAGLN 177 (316)
T ss_dssp -------SCCCEEE-EESSGGGHHHHHHHHHHHHHTTCC
T ss_pred -------cCCcEEE-eecCCCccHHHHHHHHHHHhCCCC
Confidence 4677764 444444677889999999999965
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-13 Score=137.84 Aligned_cols=230 Identities=12% Similarity=0.114 Sum_probs=149.0
Q ss_pred chhhhccCcccccccc-----cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-------hHHHH
Q 014863 90 DEYIVRGGRDLFNLLP-----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEA 157 (417)
Q Consensus 90 ~e~~~~~g~~~f~~~~-----~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-------s~~~A 157 (417)
.|+.++ +|-.|... ..-..|+||+|||.|.||.+||+.|.++ |++|++++++.++ .++.+
T Consensus 30 a~~~~~--~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~ 101 (460)
T 3k6j_A 30 AHSLAG--QWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYARE 101 (460)
T ss_dssp TTCCTT--SCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHhhc--cccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHH
Confidence 444444 57666331 1223358999999999999999999999 9999888776442 22344
Q ss_pred HHcCceec-------C--CCcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccC
Q 014863 158 RAAGFTEE-------N--GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLD 225 (417)
Q Consensus 158 ~~~G~~~~-------d--~~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~ 225 (417)
.+.|.... + ....++ +++++||+||.++|.... .+++.++.+.++++++|+ .++++.+..+.+ .
T Consensus 102 ~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~ 177 (460)
T 3k6j_A 102 KSFKRLNDKRIEKINANLKITSDF-HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---V 177 (460)
T ss_dssp HHTTSCCHHHHHHHHTTEEEESCG-GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---T
T ss_pred HHcCCCCHHHHHHHhcceEEeCCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---h
Confidence 45553210 0 013455 478999999999997643 468899999999999985 567787776654 3
Q ss_pred CCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccc
Q 014863 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (417)
Q Consensus 226 ~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfge 305 (417)
.+...+++.+||..|...+ -..-|.+....+.+.++.+..++..+|...+. . .+ ..
T Consensus 178 ~~~p~r~iG~HffnPv~~m--------------~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~-v---~d--~p---- 233 (460)
T 3k6j_A 178 LRDPSNLVGIHFFNPANVI--------------RLVEIIYGSHTSSQAIATAFQACESIKKLPVL-V---GN--CK---- 233 (460)
T ss_dssp SSSGGGEEEEECCSSTTTC--------------CEEEEECCSSCCHHHHHHHHHHHHHTTCEEEE-E---SS--CC----
T ss_pred ccCCcceEEEEecchhhhC--------------CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-E---ec--cc----
Confidence 3334589999998887651 12235567778999999999999999964221 1 11 11
Q ss_pred cccccch-HHHHHHHHHHHHHHcCCCHHHHHHHHHHH--HHHHHHHHHHHhcHHH
Q 014863 306 RGILLGA-VHGIVESLFRRFTENGMNEDLAYKNTVEC--ITGIISKIISTQGMLA 357 (417)
Q Consensus 306 qtvL~G~-~~a~iea~~~~~v~~Gl~~e~A~~~~~~~--l~~~~~~li~e~G~~~ 357 (417)
+-++.- +.+++..++..+.+.|.++++........ -+ |--.|+-..|++.
T Consensus 234 -Gfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~~~G~pm-GPf~l~D~vGlD~ 286 (460)
T 3k6j_A 234 -SFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLM-GPMTVADMNGFDV 286 (460)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTBSS-CHHHHHHHHCTHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCc-CHHHHHHHhchHH
Confidence 112222 22244445555568999999877754311 01 3445555556643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=133.10 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=129.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc-hh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd-~a 190 (417)
|||+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|+.. ..+++|+++++|+||+++|+ ..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSPE-KAEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 999887776644 455666678875 67899999999999999995 56
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccchhhh---hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 191 QADNY---EKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~~~Vl---~eI~p~Lk~GaiL~~a~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
..+++ +++.+++++|++|++..+..... +.+ .....++.++. +|-..+... ... |...+++
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~~-------g~l~~~~ 137 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGV--AVVAKGGRFLE-APVSGSKKP---AED-------GTLIILA 137 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECCHHH---HHH-------TCEEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHH--HHHHhCCEEEE-CCCcCCHHH---Hhc-------CCEEEEE
Confidence 67888 78999999999999887764321 111 01123566666 773333321 122 2333333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
.. +.+..+.+..++..+|.. ++...-......--+.... +.+..-+++.-++..+.+.|+++++.+.....
T Consensus 138 -gg--~~~~~~~~~~ll~~~g~~-~~~~g~~g~~~~~Kl~~N~-~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~ 208 (287)
T 3pef_A 138 -AG--DRNLYDEAMPGFEKMGKK-IIHLGDVGKGAEMKLVVNM-VMGGMMACFCEGLALGEKAGLATDAILDVIGA 208 (287)
T ss_dssp -EE--CHHHHHHHHHHHHHHEEE-EEECSSTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -eC--CHHHHHHHHHHHHHhCCC-eEEeCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 467889999999999964 2211101110000011111 11111113333566788999999988876554
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=133.66 Aligned_cols=202 Identities=14% Similarity=0.038 Sum_probs=128.3
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
.|+||+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|... ..+++|+++++|+||+++|+.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~ 88 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTLS-KCDELVEHGASV----CESPAEVIKKCKYTIAMLSDP 88 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSH
T ss_pred cCCEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCH
Confidence 358999999999999999999999 999888776644 445556778875 678999999999999999975
Q ss_pred -hHHHHH---HHHHhcCCCCcEEEEeccchhhh---hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEE
Q 014863 190 -AQADNY---EKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 190 -a~~~Vl---~eI~p~Lk~GaiL~~a~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
...+++ +++.+.+++|++|+++++..... +.+ .....++.++. +|-..+... ... |...+
T Consensus 89 ~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~--~~~~~g~~~v~-~pv~g~~~~---a~~-------g~l~i 155 (310)
T 3doj_A 89 CAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINE--AITGKGGRFVE-GPVSGSKKP---AED-------GQLII 155 (310)
T ss_dssp HHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECCHHH---HHH-------TCEEE
T ss_pred HHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-CCCCCChhH---Hhc-------CCeEE
Confidence 556788 67899999999999888764321 111 01123566665 663222221 112 34333
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
++ .. +.+..+.+..++..+|.. ++...-...-..--+-... +.+...+++.-++..+.+.|+++++.+.....
T Consensus 156 ~~-gg--~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~ 228 (310)
T 3doj_A 156 LA-AG--DKALFEESIPAFDVLGKR-SFYLGQVGNGAKMKLIVNM-IMGSMMNAFSEGLVLADKSGLSSDTLLDILDL 228 (310)
T ss_dssp EE-EE--CHHHHHHHHHHHHHHEEE-EEECSSTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred EE-cC--CHHHHHHHHHHHHHhCCC-EEEeCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 33 478899999999999963 2211100000000011111 11111122333556678999999988775443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=131.87 Aligned_cols=201 Identities=14% Similarity=0.039 Sum_probs=127.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch-
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~- 189 (417)
|+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|... ..+++|+++++|+||+++|+.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPAK-CAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGGG-GHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 68999999999999999999999 9998887776443 45555668775 678999999999999999986
Q ss_pred hHHHHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 190 AQADNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 a~~~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
...+++ +++.+.+++|++|++++..... .+.+ .....++.++.. |-..+.. .... |...++
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~--~~~~~g~~~~~~-pv~g~~~---~a~~-------g~l~~~ 136 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGA--AVTARGGRFLEA-PVSGTKK---PAED-------GTLIIL 136 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEC-CEECCHH---HHHH-------TCEEEE
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEC-CccCCHH---HHhc-------CCEEEE
Confidence 556788 7789999999999888765432 1111 011235566653 5222221 1122 343333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
+ .. +.+..+.+..++..+|.. ++...-...-..--+..... .+...+++.-++..+.+.|+++++.+....+
T Consensus 137 ~-gg--~~~~~~~~~~ll~~~g~~-~~~~g~~g~~~~~Kl~~N~~-~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 208 (287)
T 3pdu_A 137 A-AG--DQSLFTDAGPAFAALGKK-CLHLGEVGQGARMKLVVNMI-MGQMMTALGEGMALGRNCGLDGGQLLEVLDA 208 (287)
T ss_dssp E-EE--CHHHHHHTHHHHHHHEEE-EEECSSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred E-eC--CHHHHHHHHHHHHHhCCC-EEEcCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 33 468889999999999953 22111000000000001111 1111112333456688999999998886665
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=130.72 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=128.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh-
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a- 190 (417)
+||+|||+|+||.++|++|.+. |++|++++|+ ....+...+.|... ...+++|+++++|+||+++|+..
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLN-PQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999999 9998877665 44456666667652 03578899999999999999864
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 191 QADNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~~~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
...++ +++.+.+++|++|++.+..... .+.+ .....++.++. +|-..+... -. .|...+++
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~ 144 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA--ALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA 144 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe
Confidence 45677 6789999999999988766432 1211 11123667776 774333321 11 34444343
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc--hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATT--LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett--~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
.. +.+..+.+..++..+|.. ++... ...-.... +.... +.+...+.+.-++..+.+.|+++++.+....+
T Consensus 145 -gg--~~~~~~~~~~ll~~~g~~-~~~~~~~~g~a~~~K-l~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~ 216 (303)
T 3g0o_A 145 -SG--SEAAFTRLKPVLDAVASN-VYRISDTPGAGSTVK-IIHQL-LAGVHIAAAAEAMALAARAGIPLDVMYDVVTH 216 (303)
T ss_dssp -EC--CHHHHHHHHHHHHHHEEE-EEEEESSTTHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred -CC--CHHHHHHHHHHHHHHCCC-EEECCCCCcHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 578899999999999963 22111 00000000 11111 11112222333455788999999988876543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=131.41 Aligned_cols=201 Identities=14% Similarity=0.049 Sum_probs=120.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch-h
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~-a 190 (417)
|||+|||+|+||.+++++|.+. |++|+++++.. +..+...+.|+.. ..+++++++++|+|++++|+. .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFP-DACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSST-HHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 5799999999999999999998 99888776654 3445555668764 568889999999999999754 5
Q ss_pred HHHHHHH---HHhcCCCCcEEEEeccchhhhhhccccCCC-CCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 191 QADNYEK---IFSCMKPNSILGLSHGFLLGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~e---I~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~-~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
..+++.+ +.+++++|++|+...|+...........++ .+.. +|++|...-...... |...++ +.
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~----~~~~p~~~g~~~a~~-------~~~~~~-~~ 137 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAV----FMDAPVSGGVGAARS-------GNLTFM-VG 137 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE----EEECCEESHHHHHHH-------TCEEEE-EE
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE----EEEcCCCCChhHHhc-------CcEEEE-eC
Confidence 5677775 556789999888888876543221000111 1222 233333221112222 344333 33
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
.+.+..+.+..++..+|.. ++.+.....-..--+............+.|++. .+.+.|+++++++....
T Consensus 138 --~~~~~~~~v~~l~~~~g~~-~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~~~ 206 (296)
T 2gf2_A 138 --GVEDEFAAAQELLGCMGSN-VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMN-LGIRLGLDPKLLAKILN 206 (296)
T ss_dssp --SCGGGHHHHHHHHTTTEEE-EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHcCC-eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 3577889999999999964 111100000000000000001111122445544 88999999988777544
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-13 Score=137.32 Aligned_cols=214 Identities=11% Similarity=0.124 Sum_probs=142.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d---------~~~~ 170 (417)
++||+|||+|+||.+||++|.++ |++|++++++ .+..+.+.+ .|..... ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 37999999999999999999999 9998877665 333444332 3321000 0134
Q ss_pred CHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++ +++++||+||+++|++.. .+++.++.+.++++++| +.++++.+..+.. .+....+++..||..|.+.+
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence 55 468999999999998854 47899999999999988 5788888876654 33344589999999998872
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccc-hHHHHHHHHHHHHHH
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G-~~~a~iea~~~~~v~ 326 (417)
.. ..++.....+.+..+.+..++..+|...+. . .+. . +-++. .+.+++..++..+.+
T Consensus 151 ----------~L-vevv~g~~Ts~e~~~~~~~l~~~lGk~~v~-v---~d~--~-----Gfi~Nr~l~~~~~Ea~~l~~~ 208 (483)
T 3mog_A 151 ----------KL-VEVVSGLATAAEVVEQLCELTLSWGKQPVR-C---HST--P-----GFIVNRVARPYYSEAWRALEE 208 (483)
T ss_dssp ----------CE-EEEEECSSCCHHHHHHHHHHHHHTTCEEEE-E---ESC--T-----TTTHHHHTHHHHHHHHHHHHT
T ss_pred ----------Ce-EEEecCCCCCHHHHHHHHHHHHHhCCEEEE-E---ecc--C-----cchHHHHHHHHHHHHHHHHHh
Confidence 13 345667788999999999999999964211 1 111 0 11222 222255556666677
Q ss_pred cCCCHHHHHHHHHHHH--HHHHHHHHHHhcHHHHHh
Q 014863 327 NGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYN 360 (417)
Q Consensus 327 ~Gl~~e~A~~~~~~~l--~~~~~~li~e~G~~~l~~ 360 (417)
.|.++++..+..-... .-|--.++-..|++..+.
T Consensus 209 g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~~ 244 (483)
T 3mog_A 209 QVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244 (483)
T ss_dssp TCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHHH
Confidence 7778887666333210 014445566667654443
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=130.86 Aligned_cols=199 Identities=16% Similarity=0.102 Sum_probs=128.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec-chh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp-d~a 190 (417)
+||+|||+|+||.++|.+|.+. |++|+++++...+ .+...+.|+.. ..+.+++++++|+||+++| +..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~~-~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAEK-CDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGGG-GHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9988777765443 44555578764 5678899999999999999 677
Q ss_pred HHHHHHH---HHhcCCCCcEEEEeccch---hhhhhccccCC-CCCCcEEEe-ccCCchhhHHHHHhhcccccCCCceEE
Q 014863 191 QADNYEK---IFSCMKPNSILGLSHGFL---LGHLQSMGLDF-PKNIGVIAV-CPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 191 ~~~Vl~e---I~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~-~~di~VI~v-~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
..+++.+ +.+.+++|++|+++.... ...+.+ .+ ..++.++.. ++++|... . .|...+
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~p~~g~~~~~-----~-------~g~~~~ 164 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEAPVSGNQQLS-----N-------DGMLVI 164 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEECCEESCHHHH-----H-------HTCEEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEcCccCChhHH-----h-------hCCEEE
Confidence 7788875 458899999888776553 222222 11 134566643 23333222 1 344443
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
+. .. +.+..+.+..++..+|....+.... +......-....++++... +.|++.. +++.|+++++++....++
T Consensus 165 ~~-~g--~~~~~~~v~~ll~~~g~~~~~~~~~--~~~~~~K~~~n~~~~~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~~ 238 (316)
T 2uyy_A 165 LA-AG--DRGLYEDCSSCFQAMGKTSFFLGEV--GNAAKMMLIVNMVQGSFMATIAEGLTL-AQVTGQSQQTLLDILNQG 238 (316)
T ss_dssp EE-EE--CHHHHHHTHHHHHHHEEEEEECSST--THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHS
T ss_pred Ee-CC--CHHHHHHHHHHHHHhcCCEEEeCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHcC
Confidence 33 33 4688889999999999642111110 1000111122345555444 5555544 999999999988877665
Q ss_pred H
Q 014863 342 I 342 (417)
Q Consensus 342 l 342 (417)
.
T Consensus 239 ~ 239 (316)
T 2uyy_A 239 Q 239 (316)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=132.40 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=119.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
+||||||+|+||.+||+||.++ |++|++++|+.++ .+...+.|... +.++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 5899999999999999999999 9999888776443 44455678876 67999999999999999998877
Q ss_pred H-HHH-HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEecc-CC-chhhHHHHHhhcccccCCCceEEEe
Q 014863 192 A-DNY-EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCP-KG-MGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 ~-~Vl-~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~P-n~-pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
. +++ .++.+.+++|+++++.+-.... .+.+ .....++.++- +| .+ |... +. |-..++
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~--~~~~~g~~~ld-apVsGg~~~a-----~~-------g~l~im- 138 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQ--VHEWYGAHYVG-APIFARPEAV-----RA-------KVGNIC- 138 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECCHHHH-----HH-------TCCEEE-
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHH--HHHhcCCceec-CCcCCCcccc-----cc-------ccceee-
Confidence 5 454 4688999999999988765422 1111 11124556653 23 11 1111 12 233322
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCccccc--chhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFAT--TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iet--t~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
+.. +.++.+.++.++..+|.. ++.. ..-.=.... +-.+..+.+...++.| ++..+.+.|++++..+....
T Consensus 139 ~gG--~~~~~~~~~~~l~~~g~~-i~~~g~~~G~g~~~K-l~~N~~~~~~~~~~aE-a~~la~~~Gld~~~~~~~l~ 210 (297)
T 4gbj_A 139 LSG--NAGAKERIKPIVENFVKG-VFDFGDDPGAANVIK-LAGNFMIACSLEMMGE-AFTMAEKNGISRQSIYEMLT 210 (297)
T ss_dssp EEE--CHHHHHHHHHHHHTTCSE-EEECCSCTTHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHTTCCHHHHHHHHH
T ss_pred ccc--chhHHHHHHHHHHHhhCC-eEEecCCccHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHH
Confidence 333 568899999999999963 1110 000000000 0011111222222233 34567899999998877543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=123.88 Aligned_cols=204 Identities=12% Similarity=0.064 Sum_probs=136.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-------CceecCCCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|||+|||+|.||.+||++|. . |++|++++++ ....+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~-~~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVS-EKALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECC-HHHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 9999887765 4445666665 5553 456665 899999999
Q ss_pred eecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceE
Q 014863 185 LISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 185 avpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
++|+.... .++.++.+. +|++|+ .++++++..+.. ......+++.+||--|... +-..
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 99988763 466777665 898875 667777765543 2222347999999777543 2344
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
.+.+....+.+..+.+..++..+|.. ++.. .+. ...-+ ++ .+.+.|++. .+.+ |+++++........
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~-~v~v---~d~---fi~Nr-ll---~~~~~EA~~-l~~~-Gv~~e~id~~~~~g 207 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKE-VVVC---KGQ---SLVNR-FN---AAVLSEASR-MIEE-GVRAEDVDRVWKHH 207 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCE-EEEE---ESS---CHHHH-HH---HHHHHHHHH-HHHH-TCCHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCe-EEEe---ccc---ccHHH-HH---HHHHHHHHH-HHHh-CCCHHHHHHHHHhc
Confidence 46667778999999999999999964 2211 111 11111 11 133445444 3444 99988776654322
Q ss_pred HH--H---HHHHHHHHhcHHHHHh
Q 014863 342 IT--G---IISKIISTQGMLAVYN 360 (417)
Q Consensus 342 l~--~---~~~~li~e~G~~~l~~ 360 (417)
.- . |--.++-..|++..++
T Consensus 208 ~g~~~~~~GP~~l~D~~Gld~~~~ 231 (293)
T 1zej_A 208 LGLLYTLFGPLGNLDYIGLDVAYY 231 (293)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHhchHHHHH
Confidence 11 1 4556667777755443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-12 Score=125.74 Aligned_cols=198 Identities=16% Similarity=0.052 Sum_probs=125.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh-
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a- 190 (417)
+||+|||+|+||.++|++|++. |++|++++|+ ....+.+.+.|... ..+++|+++++|+||+++|+..
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRS-PGKAAALVAAGAHL----CESVKAALSASPATIFVLLDNHA 78 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeCCHHH
Confidence 8999999999999999999999 9998877665 44455556668775 5789999999999999999876
Q ss_pred HHHHHH--HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 191 QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 191 ~~~Vl~--eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
..+++. .+.+ +++|++|++++..... .+.+ .....++.++.. |-..++.. . |.+-..++ +
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~--~~~~~g~~~vda-pv~g~~~~-----~-----~~~~~~i~-~ 143 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQG--LVNQAGGHYVKG-MIVAYPRN-----V-----GHRESHSI-H 143 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHH--HHHHTTCEEEEE-EEESCGGG-----T-----TCTTCEEE-E
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-ccccCccc-----c-----cCCceEEE-E
Confidence 567776 5644 5789999988766422 1211 011245677664 52211110 1 12222223 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-hcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~-dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
.. +.+..+.++.++..+|. +++....-++... .++. .++.+...++.| ++..+.+.|++++..+....+.
T Consensus 144 gg--~~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k--~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~~~~ 214 (306)
T 3l6d_A 144 TG--DREAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH--AHAFAAMVTFFE-AVGAGDRFGLPVSKTARLLLET 214 (306)
T ss_dssp EE--CHHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHTTCCHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH--HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHh
Confidence 33 47899999999999976 3322200010000 1111 122222333344 4456899999999998866654
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=136.95 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=126.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---CceecCCCcCCHHhhhcc---CCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~Eav~~---ADiViLa 185 (417)
++|+|||+|+||.++|++|.+. |++|.+++|+.++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~ 85 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLM 85 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEE
Confidence 7899999999999999999999 999988877644433333332 7764 5688898887 9999999
Q ss_pred ecc-hhHHHHHHHHHhcCCCCcEEEEec-cch--hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceE
Q 014863 186 ISD-AAQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd-~a~~~Vl~eI~p~Lk~GaiL~~a~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
||+ +...++++++.|++++|++|++.+ |.. ...+.+ .....++.++ .+|...++.. ... |. .
T Consensus 86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~~-------g~-~ 151 (480)
T 2zyd_A 86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR--ELSAEGFNFI-GTGVSGGEEG---ALK-------GP-S 151 (480)
T ss_dssp SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHHH---HHH-------CC-E
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHCCCCee-CCccccCHhH---Hhc-------CC-e
Confidence 999 577889999999999999888665 432 122222 0112356676 4575444431 122 34 3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-----------HHHHHHHH---HHH-
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-----------IVESLFRR---FTE- 326 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-----------~iea~~~~---~v~- 326 (417)
+.+.. +.++.+.+..++..+|.... . -|+.....++ .|..+. ++.++.|. +++
T Consensus 152 -i~~gg--~~~~~~~v~~ll~~~g~~~~-d----Ge~~v~~~g~----~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~ 219 (480)
T 2zyd_A 152 -IMPGG--QKEAYELVAPILTKIAAVAE-D----GEPCVTYIGA----DGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGG 219 (480)
T ss_dssp -EEEES--CHHHHHHHHHHHHHHSCBCT-T----SCBSBCCCBS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEecC--CHHHHHHHHHHHHHHhcccc-C----CCceEEEECC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344 47899999999999996300 0 0111112222 233332 34555555 788
Q ss_pred cCCCHHHHHHHHH
Q 014863 327 NGMNEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|++++++.....
T Consensus 220 lGl~~~~~~~l~~ 232 (480)
T 2zyd_A 220 LNLTNEELAQTFT 232 (480)
T ss_dssp HCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 6999999887663
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=126.40 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=122.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch-h
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~-a 190 (417)
+||+|||+|.||.++|++|.+. |++|++++++.+ ..+.+.+.|+.. ..+++|+++ +|+||+++|+. .
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIE-AMTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTT-TSHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999999 999888776644 345566678875 678999999 99999999965 5
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
..++++++.+++++|++|++.+..... .+.+ .....++.++. +|-..+.. .... |...++ +..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~~~-~gg 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELAR--DLKARDIHIVD-APVSGGAA---AAAR-------GELATM-VGA 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHH--HHGGGTCEEEE-CCEESCHH---HHHH-------TCEEEE-EEC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHH---HHhc-------CCccEE-ecC
Confidence 567999999999999999988766422 1211 01123556654 45322222 1122 333333 333
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A 334 (417)
+.+..+.+..++..+|.. ++...-...-..--+.... +.+...+++.-++..+.+.|+++++.
T Consensus 150 --~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~E~~~l~~~~G~d~~~~ 212 (296)
T 3qha_A 150 --DREVYERIKPAFKHWAAV-VIHAGEPGAGTRMKLARNM-LTFTSYAAACEAMKLAEAAGLDLQAL 212 (296)
T ss_dssp --CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred --CHHHHHHHHHHHHHHcCC-eEEcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 578899999999999963 2211100000000011111 11111112333556678999999887
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.9e-13 Score=137.70 Aligned_cols=190 Identities=16% Similarity=0.064 Sum_probs=124.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----cCceecCCCcCCHHhhhcc---CCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d~~~~~~~Eav~~---ADiVi 183 (417)
.+|||||+|+||.++|++|.+. |++|.+++|+.++ .+...+ .|+.. ..+++|++++ +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSK-VDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHH-HHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 6899999999999999999999 9999888877554 444444 47764 5688898887 99999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 184 Lavpd~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
++||+. ...++++++.+++++|++|++.+.... ..+.+ .....++.++ .+|-..++. .... |.
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pVsgg~~---~a~~-------G~ 146 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE--ELKKKGILFV-GSGVSGGEE---GARY-------GP 146 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHH---HHHH-------CC
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH--HHHHcCCcee-CCCcccChh---Hhhc-------CC
Confidence 999994 677899999999999999887654321 22221 0112356666 356322222 1122 34
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-----------HHHHHHHH---HH
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-----------IVESLFRR---FT 325 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-----------~iea~~~~---~v 325 (417)
. +.+.. +.++.+.+..++..+|... . -|.....+++ .|.++. ++.++.|. ++
T Consensus 147 -~-im~gg--~~e~~~~v~~ll~~~g~~~--d----Ge~~v~~vg~----~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~ 212 (497)
T 2p4q_A 147 -S-LMPGG--SEEAWPHIKNIFQSISAKS--D----GEPCCEWVGP----AGAGHYVKMVHNGIEYGDMQLICEAYDIMK 212 (497)
T ss_dssp -E-EEEEE--CGGGHHHHHHHHHHHSCEE--T----TEESCCCCEE----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -e-EEecC--CHHHHHHHHHHHHHhcCcc--C----CCCceEEECC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33343 5678899999999999630 0 0000112222 223222 24444444 78
Q ss_pred H-cCCCHHHHHHHHH
Q 014863 326 E-NGMNEDLAYKNTV 339 (417)
Q Consensus 326 ~-~Gl~~e~A~~~~~ 339 (417)
+ .|++++++....-
T Consensus 213 ~~lGl~~~~~~~~~~ 227 (497)
T 2p4q_A 213 RLGGFTDKEISDVFA 227 (497)
T ss_dssp HTTCCCHHHHHHHHH
T ss_pred HccCCCHHHHHHHHH
Confidence 8 5999998887663
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=125.33 Aligned_cols=197 Identities=16% Similarity=0.215 Sum_probs=124.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch-h
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~-a 190 (417)
+||+|||+|.||.+++.+|.+. |++|.++++. .+..+...+.|+.. ..+++++++++|+|++++|+. .
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 5899999999999999999998 9988776654 44455555668775 568889999999999999954 4
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccc-h--hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 191 QADNY---EKIFSCMKPNSILGLSHGF-L--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~~~Vl---~eI~p~Lk~GaiL~~a~G~-~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
...++ +++.+.+++|++|++.+.. . ...+.+ .....++.++.. |-.+++.. ...| +... ++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-pv~~~~~~---~~~~------~~~~-~~ 141 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDA-PVSGGEPK---AIDG------TLSV-MV 141 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEEC-CEESHHHH---HHHT------CEEE-EE
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEEe-cCCCCHhH---HhcC------CEEE-Ee
Confidence 56777 6788999999988765433 2 223322 111235666654 53333221 1122 3443 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc-cchHHH-HHHHHHHH---HHHcCCCHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-IVESLFRR---FTENGMNEDLAYKNTV 339 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL-~G~~~a-~iea~~~~---~v~~Gl~~e~A~~~~~ 339 (417)
.. +.+..+.+..++..+|.. ++.. .+.....+ .-+ .....+ ++.++.|. +++.|+++++++..+.
T Consensus 142 -~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~~~---~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 142 -GG--DKAIFDKYYDLMKAMAGS-VVHT---GDIGAGNV---TKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp -ES--CHHHHHHHHHHHHTTEEE-EEEE---ESTTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred -CC--CHHHHHHHHHHHHHHcCC-eEEe---CCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 578889999999999963 1111 11111100 001 111111 33444444 8999999999888766
Q ss_pred HHH
Q 014863 340 ECI 342 (417)
Q Consensus 340 ~~l 342 (417)
++.
T Consensus 212 ~~~ 214 (299)
T 1vpd_A 212 GGL 214 (299)
T ss_dssp TST
T ss_pred ccC
Confidence 644
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=127.52 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=107.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec---C-------CCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---d-------~~~~~~~Eav~~ADi 181 (417)
+||+|||.|+||.++|..|.++ |++|.++.|.. ...+...+.|.... + ....+++++++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~-~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYES-DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCH-HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7899999999999999999999 99988877753 33444444442100 0 013578899999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccchhh------hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~------~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~ 254 (417)
||+++|++...++++++.++++++++|+ .+.|+... .+.+ .+|...-.+...|+.....
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----------- 168 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----------- 168 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH-----------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH-----------
Confidence 9999999999999999999999998765 55677542 2332 2333224578889876544
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 255 ~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.|.+..+++.. .+.+..+.+..++...|..
T Consensus 169 -~~g~pt~~via~-~~~~~~~~v~~lf~~~~~r 199 (356)
T 3k96_A 169 -AANLPTAVSLAS-NNSQFSKDLIERLHGQRFR 199 (356)
T ss_dssp -HTTCCEEEEEEE-SCHHHHHHHHHHHCCSSEE
T ss_pred -HcCCCeEEEEec-CCHHHHHHHHHHhCCCCee
Confidence 245665454443 3567777888888877653
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=121.98 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=121.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-------ceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|||+||| +|.||.+++..|.+. |++|++.+|+.++..+.....| +. ..+.+++++++|+|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 5899999 999999999999998 9998887776433222222223 22 246778899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEE-Eeccch--------------hhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL--------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~--------------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+++|+....++++++.+.++ +++|+ .+.|+. ...+.+ .+| +.+++.+||+.|+.......
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~ 144 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD 144 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC
Confidence 99999998899988888784 77765 445675 344443 334 46899999999988742100
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCcccccchhhhhhhhcccccccccchHHHHHHHHH
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~ai-G~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~ 321 (417)
+.|-..+++... +.++.+.+..++..+ |.. .+.. . -.+....+-++.|+++...+
T Consensus 145 -------~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~-~~~~---~-----~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 145 -------EKFDWDVPVCGD--DDESKKVVMSLISEIDGLR-PLDA---G-----PLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp -------CCCCEEEEEEES--CHHHHHHHHHHHHHSTTEE-EEEE---E-----SGGGHHHHHTHHHHHHHHHH
T ss_pred -------CCCCccEEEECC--cHHHHHHHHHHHHHcCCCC-ceec---c-----chhHHHHhcchHHHHHHHHH
Confidence 123233344343 678999999999999 863 1111 1 13455667778887766655
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=128.40 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=103.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC--------------ceecCCCcCCHHhhhc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~d~~~~~~~Eav~ 177 (417)
+||+|||+|+||.++|.+|.+. |++|.+++|... ..+...+.| +.. ..+++++++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 84 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITF----TSDVEKAYN 84 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEE----ESCHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccccccccccceee----eCCHHHHHc
Confidence 3999999999999999999988 999887776533 334444333 221 357888899
Q ss_pred cCCeEEEeecchhHHHHHHH----HHhcCCC-CcEEEEec-cchhh-------hhhccccCCCCCCcEEEeccCCchhhH
Q 014863 178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLG-------HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~e----I~p~Lk~-GaiL~~a~-G~~i~-------~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (417)
++|+||+++|++...+++++ |.+++++ +++|+.+. |+... .+.. .++.....++.+|+.+...
T Consensus 85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~---~~~~~~~~v~~gp~~~~~~- 160 (366)
T 1evy_A 85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAIEV- 160 (366)
T ss_dssp TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHHHH-
T ss_pred CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHH---HCCCCcEEEEeCCChHHHH-
Confidence 99999999999888899998 9999988 88776554 77542 1111 2232223678889887544
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh
Q 014863 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (417)
Q Consensus 245 r~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~ai 284 (417)
+.|.+.++.+. ..+.+..+.+..++...
T Consensus 161 -----------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~ 188 (366)
T 1evy_A 161 -----------ATGVFTCVSIA-SADINVARRLQRIMSTG 188 (366)
T ss_dssp -----------HTTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred -----------HhCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence 24455434333 33567888899999988
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=125.15 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=105.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC-CchhHHHHHHcCceecC-------CCcC--CHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~d-------~~~~--~~~Eav~~ADi 181 (417)
|||+|||+|+||.++|.+|.+. |++|++++|. +.+..+...+.|..... .... ++.++++++|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~ 74 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence 5899999999999999999999 9998887761 23344555555531000 0123 66788899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec-cc------hhhhhhcc-ccCCCC-CCcEEEeccCCchhhHHHHHhhcc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSM-GLDFPK-NIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~-G~------~i~~~~~~-~i~~~~-di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
||+++|+....++++++.+ ++++++|++.. |+ ....+.+. ...++. ..-.++.+|+.+...
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~--------- 144 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV--------- 144 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH---------
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH---------
Confidence 9999999999999999999 99999877654 87 22222220 001111 113567888875433
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 145 ---~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~ 175 (335)
T 1txg_A 145 ---AKRMPTTVVFSS-PSESSANKMKEIFETEYFG 175 (335)
T ss_dssp ---HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred ---HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEE
Confidence 235543344433 3577888899999988864
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-12 Score=129.55 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=125.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---CceecCCCcCCHHhhhcc---CCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~Eav~~---ADiViLa 185 (417)
++|+|||+|+||.++|++|.+. |++|.+++|..++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999999 999888777644433333332 6664 5688898876 9999999
Q ss_pred ecch-hHHHHHHHHHhcCCCCcEEEEec-cch--hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceE
Q 014863 186 ISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd~-a~~~Vl~eI~p~Lk~GaiL~~a~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
||+. ...++++++.+++++|++|++.. |.. ...+.+ .....++.++ .+|...+... ... |..
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~~-------g~~- 141 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA--ELADSGINFI-GTGVSGGEKG---ALL-------GPS- 141 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HTTTSSCEEE-EEEECSHHHH---HHH-------CCC-
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCeEE-CCCCCCChhh---hcc-------CCe-
Confidence 9995 56789999999999999887665 432 222322 1222466666 4676544431 122 343
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-----------HHHHHHHH---HHH-
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-----------IVESLFRR---FTE- 326 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-----------~iea~~~~---~v~- 326 (417)
++ +.. +.+..+.+..++..+|....+. .|......+. .|..+. ++.++.|. +.+
T Consensus 142 i~-~gg--~~~~~~~v~~ll~~~g~~~~~d----ge~~~~~~g~----~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~ 210 (474)
T 2iz1_A 142 MM-PGG--QKEAYDLVAPIFEQIAAKAPQD----GKPCVAYMGA----NGAGHYVKMVHNGIEYGDMQLIAESYDLLKRI 210 (474)
T ss_dssp EE-EEE--CHHHHHHHHHHHHHHSCBCTTT----CCBSBCCCBS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EE-ecC--CHHHHHHHHHHHHHHhcccccC----CCceEEEECC----ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 23 333 5788999999999999641000 0110112222 223322 34444444 788
Q ss_pred cCCCHHHHHHHHH
Q 014863 327 NGMNEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|++++++.....
T Consensus 211 ~Gl~~~~~~~l~~ 223 (474)
T 2iz1_A 211 LGLSNAEIQAIFE 223 (474)
T ss_dssp SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 7999998877664
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-13 Score=125.51 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=123.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||+|||+|+||.+++.+|.+ |++|.++++...+ .+...+.|+.. .. ++++++++|+|++++|+..
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~~-~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFEK-ALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTHH-HHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHHH-HHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 5789999999999999999853 5678777665443 34444446653 33 6788899999999999776
Q ss_pred -HHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 191 -QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 -~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
..++++++.+.+++|++|++.+... ...+.+ .....++.++.. |..+++. .... |...+++ .
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-p~~~~~~---~~~~-------g~~~~~~-~ 133 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLDA-PVSGGTS---GAEA-------GTLTVML-G 133 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEEC-CEESHHH---HHHH-------TCEEEEE-E
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEe-cCCCChh---HHhh-------CCeEEEE-C
Confidence 5678888999999999887665433 222322 111236677775 8655443 2223 3444343 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHH---HHHcCCCHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRR---FTENGMNEDLAYKNTV 339 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~---~v~~Gl~~e~A~~~~~ 339 (417)
. +.+..+.+..++ .+|.. ++.. .+. +....+..+.++ ++.++.|. +.+.|+++++++..+.
T Consensus 134 ~--~~~~~~~~~~ll-~~g~~-~~~~---~~~-----~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 201 (289)
T 2cvz_A 134 G--PEEAVERVRPFL-AYAKK-VVHV---GPV-----GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201 (289)
T ss_dssp S--CHHHHHHHGGGC-TTEEE-EEEE---EST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred C--CHHHHHHHHHHH-hhcCC-eEEc---CCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 2 578888899999 99853 2211 111 111112222222 34555555 8999999998887766
Q ss_pred HHH
Q 014863 340 ECI 342 (417)
Q Consensus 340 ~~l 342 (417)
++.
T Consensus 202 ~~~ 204 (289)
T 2cvz_A 202 ASS 204 (289)
T ss_dssp TST
T ss_pred ccC
Confidence 544
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=128.25 Aligned_cols=182 Identities=14% Similarity=0.067 Sum_probs=118.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-----------ceecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----------~~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||+|+||.++|.+|.++ |++|.+++|..++ .+...+.| +.. ..++++ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 7999999999999999999999 9999888776443 33334445 232 456778 89999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe-ccchhhh-------hhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLGH-------LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a-~G~~i~~-------~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+||++||+++..++++++.+ ++++|+.+ .|+.... +.+ .++ ....++.+|+.+...
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~---~~~-~~~~~~~~P~~~~~~--------- 146 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEE---ILG-CPYAVLSGPSHAEEV--------- 146 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHH---HTC-CCEEEEESSCCHHHH---------
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHH---HcC-CceEEEECCccHHHH---------
Confidence 99999999888899987766 67776644 4765321 111 123 224788999997665
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccc-------------ccc----------c
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE-------------RGI----------L 309 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfge-------------qtv----------L 309 (417)
+.|.+..+....+ + .+.+..++...|....+. + |+++. .++ +
T Consensus 147 ---~~g~~~~~~~g~~-~---~~~~~~ll~~~g~~~~~~-----~---di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~ 211 (335)
T 1z82_A 147 ---AKKLPTAVTLAGE-N---SKELQKRISTEYFRVYTC-----E---DVVGVEIAGALKNVIAIAAGILDGFGGWDNAK 211 (335)
T ss_dssp ---HTTCCEEEEEEET-T---HHHHHHHHCCSSEEEEEE-----S---CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ---hCCCceEEEEEeh-h---HHHHHHHhCCCCEEEEec-----C---chHHHHHHHHHHhHHHHHHHHHhcCCCCchhH
Confidence 2455433333322 1 567778888877531111 1 21110 001 1
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
......++..+.+.+.+.|++++..+.
T Consensus 212 ~a~~~~~~~E~~~la~a~G~~~~~~~~ 238 (335)
T 1z82_A 212 AALETRGIYEIARFGMFFGADQKTFMG 238 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence 122223666688889999999987654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=125.58 Aligned_cols=187 Identities=15% Similarity=0.043 Sum_probs=116.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCc------hhHHHHHHcCceecCCCcC-CHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~------~s~~~A~~~G~~~~d~~~~-~~~Eav~~ADiVi 183 (417)
+||+|||+|+||.++|++|.+. | ++|+++++... ...+.+.+.|+ . . +++|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 89888777631 33445555666 2 4 6789999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEecc-CCchhhHHHHHhhcccccCCCc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCP-KGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~P-n~pg~~vr~ly~~G~e~~G~Gv 259 (417)
+++|+....++++++.+.+++|++|++.++.... .+.+ .....++.++- +| .+|... ..| -
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~--~l~~~g~~~~d-~pv~g~~~a-----~~g-------~ 157 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAG--AIATGKGSFVE-GAVMARVPP-----YAE-------K 157 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHH--HHHTSSCEEEE-EEECSCSTT-----TGG-------G
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-ccCCCCchh-----hcC-------C
Confidence 9999999999889999999999999988776422 2221 01123455543 23 112111 022 2
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccch-hhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHH
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~~iett~-~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e 332 (417)
..+++...+ . +.+..++..+|.. ++...- ...-..--+...+.+ ...-+++.-++..+.+.|++++
T Consensus 158 l~i~vgg~~----~-~~~~~ll~~~g~~-v~~~g~~~g~a~~~Kl~~N~~~-~~~~~~~~E~~~la~~~Gid~~ 224 (317)
T 4ezb_A 158 VPILVAGRR----A-VEVAERLNALGMN-LEAVGETPGQASSLKMIRSVMI-KGVEALLIEALSSAERAGVTER 224 (317)
T ss_dssp SEEEEESTT----H-HHHHHHHHTTTCE-EEEEESSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred EEEEEeCCh----H-HHHHHHHHHhCCC-eEEeCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 333443332 1 7888999999863 222210 000001112222222 2222234445678889999994
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=124.99 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=125.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch-h
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~-a 190 (417)
+||+|||+|.||.++|++|.+. |++|++++|. ....+...+.|+.. ..+++|+++++|+||+++|+. .
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 100 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEA------GYALQVWNRT-PARAASLAALGATI----HEQARAAARDADIVVSMLENGAV 100 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEECCCHHH
Confidence 8999999999999999999999 9998877665 44455666668775 578999999999999999965 5
Q ss_pred HHHHHH--HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 191 QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 191 ~~~Vl~--eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
..+++. ++.+.+++|++|++....... .+.. .....++.++. +|-..+.. .-.. |...++ +
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~i~-~ 166 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAA--RLGALGIAHLD-TPVSGGTV---GAEQ-------GTLVIM-A 166 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECHHH---HHHH-------TCEEEE-E
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHh---HHhc-------CCeeEE-e
Confidence 567887 788999999999988765432 1111 01123566665 36333222 1122 233333 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
.. +.++.+.+..++..+ .. ++...-...-..--+-... +.+..-+++.-++..+.+.|+++++.+....
T Consensus 167 gg--~~~~~~~~~~ll~~~-~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 235 (320)
T 4dll_A 167 GG--KPADFERSLPLLKVF-GR-ATHVGPHGSGQLTKLANQM-IVGITIGAVAEALLFATKGGADMAKVKEAIT 235 (320)
T ss_dssp ES--CHHHHHHHHHHHHHH-EE-EEEEESTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHHHhc-CC-EEEeCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 578899999999999 42 2222100000000011111 1111112333455667899999998877543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=120.65 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=123.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh-
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a- 190 (417)
+||+|||+|.||.+++.+|.+. |++|.++++. ....+...+.|+.. ..+++++++++|+|++++|...
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLM-EANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7999999999999999999998 9988776655 33444555557764 5688899999999999998655
Q ss_pred HHHHHH---HHHhcCCCCcEEEEe-ccc--hhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 191 QADNYE---KIFSCMKPNSILGLS-HGF--LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~~~Vl~---eI~p~Lk~GaiL~~a-~G~--~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
...++. ++.+.+++|++|++. .|. ....+.+ .....++.++. +|..++.. .+.. |...+++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~--~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~~ 140 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK--VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIMV 140 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH--HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEEE
Confidence 567775 788999999987754 454 2333332 01113556664 57554442 2233 3433343
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhc---ccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI---FGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dl---fgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
.. +.+..+.+..++..+|..... . .+..... +............+.| ++..+.+.|+++++++....++
T Consensus 141 -~g--~~~~~~~v~~ll~~~g~~~~~-~---~~~g~~~~~Kl~~N~~~~~~~~~~~E-a~~l~~~~G~~~~~~~~~~~~~ 212 (301)
T 3cky_A 141 -GA--SEAVFEKIQPVLSVIGKDIYH-V---GDTGAGDAVKIVNNLLLGCNMASLAE-ALVLGVKCGLKPETMQEIIGKS 212 (301)
T ss_dssp -ES--CHHHHHHHHHHHHHHEEEEEE-E---ESTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCHHHHHHHHHTS
T ss_pred -CC--CHHHHHHHHHHHHHhcCCEEE-e---CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHcC
Confidence 33 678889999999999964111 1 0100000 0000000001111223 2333899999999888766654
Q ss_pred H
Q 014863 342 I 342 (417)
Q Consensus 342 l 342 (417)
.
T Consensus 213 ~ 213 (301)
T 3cky_A 213 S 213 (301)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-12 Score=124.28 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=106.8
Q ss_pred cccCC-CCEEEEEcccchHHHHHHHHHhhhhhhcCC-------ceEEEEecCCc----hhHHHHHHc-------------
Q 014863 106 DAFNG-INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGS----RSFAEARAA------------- 160 (417)
Q Consensus 106 ~~l~g-~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~Vivg~r~~~----~s~~~A~~~------------- 160 (417)
...++ |+||+|||+|+||.++|.+|.++ | ++|.+++|... +..+...+.
T Consensus 15 ~~~~~~~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 88 (375)
T 1yj8_A 15 DKLKDGPLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLP 88 (375)
T ss_dssp HHHHHSCBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCC
T ss_pred hcCccCCCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCc
Confidence 33344 36899999999999999999998 8 88888877644 023332222
Q ss_pred -CceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHh----cCCCCcEEEEec-cchhh---------hhhccccC
Q 014863 161 -GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLSH-GFLLG---------HLQSMGLD 225 (417)
Q Consensus 161 -G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p----~Lk~GaiL~~a~-G~~i~---------~~~~~~i~ 225 (417)
++.. ..+++++++++|+||++||++...+++++|.+ +++++++|+.+. |+... .+.+ .
T Consensus 89 ~~i~~----~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~ 161 (375)
T 1yj8_A 89 HNIVA----HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---F 161 (375)
T ss_dssp TTEEE----ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---H
T ss_pred CCeEE----ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---H
Confidence 2222 35677889999999999999988999999999 999999876544 76431 1222 1
Q ss_pred CCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 226 ~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
++.+ -.++.+|+.+... +.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 162 ~~~~-~~v~~gp~~a~~v------------~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~~ 209 (375)
T 1yj8_A 162 LNIP-CSALSGANIAMDV------------AMENFSEATIGG-NDKDSLVIWQRVFDLPYFK 209 (375)
T ss_dssp SSSC-EEEEECSCCHHHH------------HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred cCCC-EEEEeCCchHHHH------------HhCCCeEEEEec-CCHHHHHHHHHHhCCCCeE
Confidence 2322 3578899887544 245555444332 3567888888999888853
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-11 Score=122.17 Aligned_cols=149 Identities=9% Similarity=0.029 Sum_probs=105.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------ceEEEEecCCch----hHHHHHHcC--------------ceecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~Vivg~r~~~~----s~~~A~~~G--------------~~~~d 166 (417)
+||+|||+|+||.++|.+|.++ | ++|.+++|.... ..+...+.+ +..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-- 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence 6999999999999999999998 8 788887776440 233333221 221
Q ss_pred CCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccchh---------hhhhccccCCCCCCcEEEec
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL---------GHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i---------~~~~~~~i~~~~di~VI~v~ 236 (417)
..+++++++++|+||+++|++...+++++|.++++++++|+ .+.|+.+ ..+.+ .++.+ ..++.+
T Consensus 81 --~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~~v~~g 154 (354)
T 1x0v_A 81 --VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGIP-MSVLMG 154 (354)
T ss_dssp --ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTCC-EEEEEC
T ss_pred --EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCCC-EEEEEC
Confidence 35778889999999999999998999999999999998766 4456642 11222 12312 467899
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
|+.+... +.|.+..+.+. ..+.+..+.+..++...|..
T Consensus 155 p~~a~~v------------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~ 192 (354)
T 1x0v_A 155 ANIASEV------------ADEKFCETTIG-CKDPAQGQLLKELMQTPNFR 192 (354)
T ss_dssp SCCHHHH------------HTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEE
T ss_pred CCcHHHH------------HhcCCceEEEE-ECCHHHHHHHHHHhCCCCEE
Confidence 9987654 24555444443 34567888889999988853
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.7e-12 Score=125.49 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=108.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccC---CeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~A---DiVi 183 (417)
-+++ +||+|||+|+||.++|++|.+. |++|++++|. ....+.+.+.|+.. ..+++|+++++ |+||
T Consensus 19 Mm~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi 86 (358)
T 4e21_A 19 YFQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLN-VNAVQALEREGIAG----ARSIEEFCAKLVKPRVVW 86 (358)
T ss_dssp ---C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEE
T ss_pred hhcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEE
Confidence 3455 8999999999999999999999 9998877665 44456666778774 57899999999 9999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
+++|+....++++++.+.+++|++|++.+..... .+.+ .....++.++-. |-.-+.. .-+. |.
T Consensus 87 ~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vda-pVsGg~~---~a~~-------G~- 152 (358)
T 4e21_A 87 LMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVDV-GTSGGIF---GLER-------GY- 152 (358)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEEE-EEECGGG---HHHH-------CC-
T ss_pred EeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEeC-CCCCCHH---HHhc-------CC-
Confidence 9999997778999999999999999988765421 1211 122346666643 4211111 1122 33
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~ 286 (417)
+ |.+.. +.++.+.++.++..+|.
T Consensus 153 ~-im~GG--~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 153 C-LMIGG--EKQAVERLDPVFRTLAP 175 (358)
T ss_dssp E-EEEES--CHHHHHHTHHHHHHHSC
T ss_pred e-eeecC--CHHHHHHHHHHHHHhcc
Confidence 3 33444 46899999999999994
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-13 Score=141.53 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=122.6
Q ss_pred hhhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 91 EYIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 91 e~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
...+|+|+|.... ....+.| ++|||||+|+||.++|++|+.. |++|+++++.. +.+.+.+.|+..
T Consensus 122 ~~~~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~~----- 187 (529)
T 1ygy_A 122 DASLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIEL----- 187 (529)
T ss_dssp HHHHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCEE-----
T ss_pred HHHHHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcEE-----
Confidence 3456788896432 2367999 9999999999999999999998 99987766543 345577778874
Q ss_pred CCHHhhhccCCeEEEeecch-hHHHHHHH-HHhcCCCCcEEEEec-cchh------hhhhccccCCCCCCcEEEeccCCc
Q 014863 170 GDIYETISGSDLVLLLISDA-AQADNYEK-IFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~-a~~~Vl~e-I~p~Lk~GaiL~~a~-G~~i------~~~~~~~i~~~~di~VI~v~Pn~p 240 (417)
.+.++++++||+|++++|+. ....++.+ +.+.||+|++|++++ |-.+ ..+.+..+ -...+||+..||. +
T Consensus 188 ~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i-~ga~lDv~~~eP~-~ 265 (529)
T 1ygy_A 188 LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV-RAAGLDVFATEPC-T 265 (529)
T ss_dssp CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE-EEEEESSCSSSSC-S
T ss_pred cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCc-cEEEEeeccCCCC-C
Confidence 38899999999999999988 55677764 889999999998765 3211 11111000 0124678888884 2
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH-----HHHHHHHhCCC
Q 014863 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSP 287 (417)
Q Consensus 241 g~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~-----a~al~~aiG~~ 287 (417)
.+ .+|+ +-+++++||.. .+.++.+. +..++..+++.
T Consensus 266 ~~---~L~~--------~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 266 DS---PLFE--------LAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp CC---GGGG--------CTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Cc---hHHh--------CCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 21 2343 36888999998 67787775 77888888875
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=119.97 Aligned_cols=185 Identities=16% Similarity=0.132 Sum_probs=112.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC-CchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||+|||+|+||.++|.+|.+. |++|++.++. ..+..+...+.|+. .+++++++++|+||+++|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 5899999999999999999999 9988775442 23344555555664 356788999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
+.+.+.++.+.+++ +|++..+... ..+.+ .+++. .++. +|-..++. ... .|.+ +++...
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~---~~~~~-g~~~-~~v~~~~~---~~~-------~g~~-~~~~g~ 130 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNISPETVRMASS---LIEKG-GFVD-AAIMGSVR---RKG-------ADIR-IIASGR 130 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCCHHHHHHHHH---HCSSS-EEEE-EEECSCHH---HHG-------GGCE-EEEEST
T ss_pred HHHHHHHHHHhcCc--EEEEccCCCHHHHHHHHH---HHhhC-Ceee-eeeeCCcc---ccc-------cCCe-EEecCC
Confidence 87777888888877 7777776642 23333 23321 1332 34221111 111 3455 444333
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHH---HHHcCCCHHHHHHHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRR---FTENGMNEDLAYKNTVE 340 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~---~v~~Gl~~e~A~~~~~~ 340 (417)
+ . +.+.. +..+|.. ++.. .+ + ++....+-.+.++ ++.++.|. +++.|++++ ++....+
T Consensus 131 ~---~--~~~~~-l~~~g~~-~~~~---~~---~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~ 195 (264)
T 1i36_A 131 D---A--EEFMK-LNRYGLN-IEVR---GR---E-PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEY 195 (264)
T ss_dssp T---H--HHHHG-GGGGTCE-EEEC---SS---S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHT
T ss_pred c---H--HHhhh-HHHcCCe-eEEC---CC---C-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHH
Confidence 2 1 66677 8889853 2211 11 1 2222222222222 34444444 899999986 7765554
Q ss_pred H
Q 014863 341 C 341 (417)
Q Consensus 341 ~ 341 (417)
+
T Consensus 196 ~ 196 (264)
T 1i36_A 196 T 196 (264)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-12 Score=119.89 Aligned_cols=197 Identities=12% Similarity=0.051 Sum_probs=122.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||+|||+|.||.++|.+|.+. |++|++++ + ....+...+.|+.. ..+++++++++|+|++++|+..
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT-I-GPVADELLSLGAVN----VETARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-S-SCCCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-C-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence 47999999999999999999998 99887665 4 33344455557664 5688899999999999998877
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 Q-ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+ ..++. ++.+.+++|++|++..... ...+.+ .....++.++ -+|...++. .... |...++
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~-~~p~~~~~~---~a~~-------g~~~~~ 137 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ--RVNEMGADYL-DAPVSGGEI---GARE-------GTLSIM 137 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEE-ECCEESHHH---HHHH-------TCEEEE
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-EccCCCCHH---HHHc-------CCeEEE
Confidence 4 57887 7888999999887655432 222322 0111244554 235333321 2222 343433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccc-cccchHHH-HHHHHHHH---HHHcCCCHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVESLFRR---FTENGMNEDLAYKNT 338 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqt-vL~G~~~a-~iea~~~~---~v~~Gl~~e~A~~~~ 338 (417)
+ .. +.+..+.+..++..+|.. ++.. .+..... .. .+.....+ ++.++.|. +.+.|+++++++...
T Consensus 138 ~-~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~~---~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 207 (295)
T 1yb4_A 138 V-GG--EQKVFDRVKPLFDILGKN-ITLV---GGNGDGQ---TCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL 207 (295)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEEE-EEEE---ESTTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-EEEe---CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 678889999999999963 1111 1111110 00 01111222 33344444 899999999888766
Q ss_pred HHHH
Q 014863 339 VECI 342 (417)
Q Consensus 339 ~~~l 342 (417)
.++.
T Consensus 208 ~~~~ 211 (295)
T 1yb4_A 208 MGGF 211 (295)
T ss_dssp TSSS
T ss_pred HcCC
Confidence 5544
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=126.91 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=112.6
Q ss_pred hhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 91 EYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 91 e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
...+|+|+|.... ...+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ ..+.+.|+.. .
T Consensus 124 ~~~~~~g~w~~~~-~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~ 188 (313)
T 2ekl_A 124 MALAKSGIFKKIE-GLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA-----V 188 (313)
T ss_dssp HHHHHTTCCCCCC-CCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----C
T ss_pred HHHHHcCCCCCCC-CCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee-----c
Confidence 4457788996333 368999 9999999999999999999998 9998777665433 3466778773 4
Q ss_pred CHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEeccchh-------hhhhccccCCCCCCcEEEeccCCch
Q 014863 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg 241 (417)
+.++++++||+|++++|.... ..++ ++..+.||+|++|+.++--.+ ..+.+..+ -...+||+..+|.. .
T Consensus 189 ~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i-~ga~lDv~~~eP~~-~ 266 (313)
T 2ekl_A 189 SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKV-YAYATDVFWNEPPK-E 266 (313)
T ss_dssp CHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCE-EEEEESCCSSSSCC-S
T ss_pred CHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCC-cEEEEecCCCCCCC-C
Confidence 889999999999999997664 4566 467788999999886653221 11222111 11245788888854 3
Q ss_pred hhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014863 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 242 ~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a 277 (417)
.....+|.. -+.+++||.. .|.++.+..
T Consensus 267 ~~~~~L~~~--------~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 267 EWELELLKH--------ERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp HHHHHHHHS--------TTEEECCSCTTCSHHHHHHH
T ss_pred cccchHhhC--------CCEEECCccCcCcHHHHHHH
Confidence 333356653 6788999874 444554443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=127.26 Aligned_cols=149 Identities=16% Similarity=0.116 Sum_probs=103.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-------ceecCCCcCCHHhhhcc---CCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~d~~~~~~~Eav~~---ADi 181 (417)
|||+|||+|+||.++|++|.+. |++|.+++|..++..+...+.| +.. ..+++|++++ +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999999 9998888776444333333446 443 5688888874 999
Q ss_pred EEEeecch-hHHHHHHHHHhcCCCCcEEEEec-cch--hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCC
Q 014863 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (417)
Q Consensus 182 ViLavpd~-a~~~Vl~eI~p~Lk~GaiL~~a~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~ 257 (417)
||++||+. ...++++++.+++++|++|++.. |.. ...+.+ .....++.++. +|...+... ...
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~--~l~~~g~~~v~-~pv~gg~~~---a~~------- 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ--QLEAAGLRFLG-MGISGGEEG---ARK------- 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH--HHHTTTCEEEE-EEEESHHHH---HHH-------
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH--HHHHCCCeEEE-eeccCCHHH---Hhc-------
Confidence 99999995 66789999999999999887654 442 222222 11123566664 565444431 122
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 258 GINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 258 Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
|. .++ +.. +.++.+.+..++..+|..
T Consensus 139 g~-~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 GP-AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp CC-EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred CC-eEe-ccC--CHHHHHHHHHHHHHhccc
Confidence 34 333 333 478899999999999964
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-12 Score=130.46 Aligned_cols=191 Identities=17% Similarity=0.078 Sum_probs=122.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----cCceecCCCcCCHHhhhc---cCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETIS---GSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d~~~~~~~Eav~---~ADiVi 183 (417)
+||+|||+|+||.++|++|.+. |++|.+++|..++ .+...+ .|+.. ..+++++++ ++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 5899999999999999999999 9998887776444 444444 56654 568888874 899999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEec-cch--hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 184 Lavpd~-a~~~Vl~eI~p~Lk~GaiL~~a~-G~~--i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
++||+. ...++++++.|++++|++|++.. |.. ...+.+ .....++.++ .+|...+... .. .|.
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~g~~~~---a~-------~g~ 138 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFV-GSGVSGGEDG---AR-------YGP 138 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHHH---HH-------HCC
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEe-CCCCCCChhh---hc-------cCC
Confidence 999996 66789999999999999888664 442 112221 1112356666 4675444331 12 234
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-----------HHHHH---HHHHH
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-----------IVESL---FRRFT 325 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-----------~iea~---~~~~v 325 (417)
.++ +.. +.++.+.+..++..+|... . ..+......+. .|..+. ++.++ ++.+.
T Consensus 139 -~i~-~gg--~~e~~~~v~~ll~~~g~~v--~---d~~~~~~~~g~----~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~ 205 (482)
T 2pgd_A 139 -SLM-PGG--NKEAWPHIKAIFQGIAAKV--G---TGEPCCDWVGD----DGAGHFVKMVHNGIEYGDMQLICEAYHLMK 205 (482)
T ss_dssp -EEE-EEE--CTTTHHHHHHHHHHHSCBC--T---TSCBSCCCCEE----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eEE-eCC--CHHHHHHHHHHHHHhhhhc--c---CCCcceEEECC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323 333 3578888999999999641 0 00111111111 222222 23444 44488
Q ss_pred Hc-CCCHHHHHHHHH
Q 014863 326 EN-GMNEDLAYKNTV 339 (417)
Q Consensus 326 ~~-Gl~~e~A~~~~~ 339 (417)
+. |++++++.....
T Consensus 206 ~~~G~~~~~~~~~~~ 220 (482)
T 2pgd_A 206 DVLGLGHKEMAKAFE 220 (482)
T ss_dssp HTSCCCHHHHHHHHH
T ss_pred hcCCcCHHHHHHHHH
Confidence 88 999998776654
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-13 Score=126.40 Aligned_cols=151 Identities=14% Similarity=0.084 Sum_probs=104.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
..+ +||+|||+|+||.++|++|.+. |++|++++|... .+.....|+.. .+..++++++|+||+++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~~-----~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAEV-----LCYSEAASRSDVIVLAVH 82 (201)
Confidence 556 8999999999999999999998 888887776533 23333345552 377888999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-Eeccch--------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCC
Q 014863 188 DAAQADNYEKIFSCMKPNSILG-LSHGFL--------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~--------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~G 258 (417)
++...+++ ++.+ ++++++|+ .+.|+. ..+++. .++. -++|+++||+|.......-..| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g-----~- 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA-----S- 150 (201)
Confidence 98777777 5655 45677655 667774 244443 3444 4899999999987742111111 1
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 259 v~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
...+++ .. +.++.+.+..++..+|..
T Consensus 151 ~~~~~~-g~--~~~~~~~v~~ll~~~G~~ 176 (201)
T 2yjz_A 151 RQVFVC-GN--DSKAKDRVMDIARTLGLT 176 (201)
Confidence 123233 33 467888999999999964
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=121.83 Aligned_cols=209 Identities=15% Similarity=0.102 Sum_probs=122.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHH-cCceecC--CC-------cCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~-~G~~~~d--~~-------~~~~~Eav~~AD 180 (417)
|||+|||+|+||.++|.+|.++. ....| ++|++++| .+..+...+ .|+...+ +. ..+..+.++++|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~-~~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRA-AATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHH-HHTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCc-cccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 58999999999999999997640 00004 68877776 344555555 6876421 00 013345678999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccchh-hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc-cccCC
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK-EINGA 257 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i-~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~-e~~G~ 257 (417)
+||++||+....++++++.++++++++|+ ...|+.. ..+.+ .+|+. .+++.+|+.+..... .|. +..+.
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~----pg~~~~~~~ 157 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSA----PGLITLEAD 157 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEE----TTEEEEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcC----CCEEEEcCC
Confidence 99999999999999999999998888765 4678765 34443 34443 566777765443310 000 00123
Q ss_pred CceEEEeec-CCCCHHHHHHHHHHHHHhCCCcccccchhhhh-----hhhcccccccccchHHH------------HHHH
Q 014863 258 GINSSFAVH-QDVDGRATNVALGWSVALGSPFTFATTLEQEY-----RSDIFGERGILLGAVHG------------IVES 319 (417)
Q Consensus 258 Gv~~liav~-qd~sgea~e~a~al~~aiG~~~~iett~~~E~-----~~dlfgeqtvL~G~~~a------------~iea 319 (417)
|...++... ...+.+.. .+..++...|....+...+.... .--.+...++++|+.++ ++.-
T Consensus 158 g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E 236 (317)
T 2qyt_A 158 RELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEE 236 (317)
T ss_dssp EEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHH
T ss_pred CceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 333224433 33345556 77899999996421111100000 00044555666666544 2222
Q ss_pred HHHHHHHcCCCHH
Q 014863 320 LFRRFTENGMNED 332 (417)
Q Consensus 320 ~~~~~v~~Gl~~e 332 (417)
+...+.+.|++++
T Consensus 237 ~~~v~~a~G~~~~ 249 (317)
T 2qyt_A 237 VAELFRAKYGQVP 249 (317)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHcCCCCC
Confidence 4455667788764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=118.45 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=116.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---Cc--eecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~--~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|||+|||+|+||.++|.+|.+. |++|.+++|...+..+ .... |. .. .-...+ .++++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~~~-~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTAND-PDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEESC-HHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeeecC-ccccCCCCEEEEEe
Confidence 5899999999999999999999 9998887776432211 1111 21 00 001223 46788999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-Eeccchh-hhhhccccCCCC---CC---cEEEeccCCchhhHHHHHhhcccccCCC
Q 014863 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPK---NI---GVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i-~~~~~~~i~~~~---di---~VI~v~Pn~pg~~vr~ly~~G~e~~G~G 258 (417)
|+....++++++.++++++++|+ ...|+.. ..+.+ .+++ ++ ...+.+| .+... +.|
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~~~~g~~~~~~~~~~p-~~~~~------------~~g 135 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQPLLMGTTTHAARRDGN-VIIHV------------ANG 135 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSCEEEEEECCEEEEETT-EEEEE------------ECC
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCCeEEEEEeEccEEcCC-EEEEe------------ccc
Confidence 99999999999999999998765 5677754 23433 3333 11 1234455 33222 356
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-----hcccccccccchH-----------HHHHHHHHH
Q 014863 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-----DIFGERGILLGAV-----------HGIVESLFR 322 (417)
Q Consensus 259 v~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~-----dlfgeqtvL~G~~-----------~a~iea~~~ 322 (417)
... +.+.. .+.+..+.+..++..+|....+...+...... -.++..++|+|+. ..++.-+..
T Consensus 136 ~~~-i~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~ 213 (291)
T 1ks9_A 136 ITH-IGPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAA 213 (291)
T ss_dssp CEE-EEESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHH
T ss_pred ceE-EccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHH
Confidence 544 44432 23456677889999999652221111000000 0334444454432 224555666
Q ss_pred HHHHcCCCHH
Q 014863 323 RFTENGMNED 332 (417)
Q Consensus 323 ~~v~~Gl~~e 332 (417)
.+.+.|++++
T Consensus 214 va~a~G~~~~ 223 (291)
T 1ks9_A 214 VIEREGHHTS 223 (291)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHcCCCCC
Confidence 7788999873
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=125.42 Aligned_cols=153 Identities=17% Similarity=0.057 Sum_probs=103.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-CCcCCHHhhhc---cCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-~~~~~~~Eav~---~ADiViLav 186 (417)
+++|||||+|+||.++|++|.+. |++|++++|+.++ .+...+.|..... ....+++|+++ ++|+|+++|
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~V 76 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLV 76 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECS
T ss_pred CCEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEec
Confidence 37899999999999999999999 9999888776544 4444443321000 01367888887 599999999
Q ss_pred cch-hHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEE
Q 014863 187 SDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 187 pd~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
|+. ...++++++.++|++|++|++.+.... ..+.+ .....++.++.. |-.-+.. ..+.| . +
T Consensus 77 p~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pVsGg~~---gA~~G-------~-~- 141 (484)
T 4gwg_A 77 KAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GVSGGEE---GARYG-------P-S- 141 (484)
T ss_dssp CSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EEESHHH---HHHHC-------C-E-
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-CccCCHH---HHhcC-------C-e-
Confidence 996 566899999999999999998875432 11111 011346777764 6221221 22233 3 3
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.+.. +.++.+.++.++..+|..
T Consensus 142 im~GG--~~ea~~~v~pll~~ig~~ 164 (484)
T 4gwg_A 142 LMPGG--NKEAWPHIKTIFQGIAAK 164 (484)
T ss_dssp EEEEE--CGGGHHHHHHHHHHHSCB
T ss_pred eecCC--CHHHHHHHHHHHHHhcCc
Confidence 33454 468899999999999964
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-11 Score=127.82 Aligned_cols=204 Identities=10% Similarity=0.067 Sum_probs=133.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-----------HHcCc-------------eecC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGF-------------TEEN 166 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~-------------~~~d 166 (417)
++||+|||.|+||.+||.+|.++ |++|++++++.+ ..+.+ .+.|. ..
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-- 384 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-- 384 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE--
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE--
Confidence 58999999999999999999999 999888776533 23332 22342 21
Q ss_pred CCcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
..++ +++++||+||+++|.... .+++.++.++++++++|+ .++++.+..+.. .....-+++..||..|...
T Consensus 385 --~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~ 458 (715)
T 1wdk_A 385 --TLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM 458 (715)
T ss_dssp --ESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT
T ss_pred --ECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc
Confidence 3455 678999999999997764 468889999999999875 566777766544 2222347999999888654
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccch-HHH-HHHHHH
Q 014863 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA-VHG-IVESLF 321 (417)
Q Consensus 244 vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~-~~a-~iea~~ 321 (417)
+ -...+.+....+.+..+.+..++..+|...++ . .+. .-| ++.- +.+ +.|+ .
T Consensus 459 ~--------------~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~-v---~d~--~Gf-----i~Nril~~~~~Ea-~ 512 (715)
T 1wdk_A 459 M--------------PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV-V---NDC--PGF-----LVNRVLFPYFGGF-A 512 (715)
T ss_dssp C--------------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE-E---ESC--TTT-----THHHHHHHHHHHH-H
T ss_pred C--------------ceEEEEECCCCCHHHHHHHHHHHHHhCCEeEE-E---cCC--CCh-----hhhHHHHHHHHHH-H
Confidence 1 12234567778899999999999999964221 1 110 111 2222 222 3444 3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHH
Q 014863 322 RRFTENGMNEDLAYKNTVECIT--GIISKIISTQGMLA 357 (417)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~ 357 (417)
.+++.|+++++..... ...- -|--.++-..|++.
T Consensus 513 -~l~~~G~~~~~id~~~-~~~G~p~Gp~~l~D~vGld~ 548 (715)
T 1wdk_A 513 -KLVSAGVDFVRIDKVM-EKFGWPMGPAYLMDVVGIDT 548 (715)
T ss_dssp -HHHHTTCCHHHHHHHH-HHHTCSSCHHHHHHHHCHHH
T ss_pred -HHHHCCCCHHHHHHHH-HHcCCCCCHHHHHHHhhHHH
Confidence 3445699998766544 2210 13345555556643
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=121.36 Aligned_cols=161 Identities=18% Similarity=0.096 Sum_probs=110.6
Q ss_pred hhhhccCccccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 91 EYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 91 e~~~~~g~~~f~-~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
...+|+|+|... .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ +.+.+.|+..
T Consensus 122 ~~~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~----- 187 (307)
T 1wwk_A 122 DRKMREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGKF----- 187 (307)
T ss_dssp HHHHTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----
T ss_pred HHHHHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCccc-----
Confidence 345678888631 12368999 9999999999999999999988 9998777665433 4566778763
Q ss_pred CCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEeccch-------hhhhhccccCCCCCCcEEEeccCCc
Q 014863 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~G~~-------i~~~~~~~i~~~~di~VI~v~Pn~p 240 (417)
.+.++++++||+|++++|.... ..++ ++..+.||+|++|+.++--. ...+.+ +.......||+..+|.-+
T Consensus 188 ~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~eP~~~ 266 (307)
T 1wwk_A 188 VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFEEEPLPK 266 (307)
T ss_dssp CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCSSSSCCT
T ss_pred cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCCCCCCCC
Confidence 4789999999999999997664 4556 46778899999988665322 122322 111123567777788532
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014863 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 241 g~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a 277 (417)
.+ .+|+ .-+++++||.. .|.++.+..
T Consensus 267 ~~---~L~~--------~~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 267 DH---PLTK--------FDNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp TC---GGGG--------CTTEEECSSCTTCBHHHHHHH
T ss_pred CC---hHHh--------CCCEEECCccccCcHHHHHHH
Confidence 22 2333 36788999874 344554443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=126.05 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=108.3
Q ss_pred hhhhccCcccc----cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec-CCchhHHHHHHcCceec
Q 014863 91 EYIVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEE 165 (417)
Q Consensus 91 e~~~~~g~~~f----~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~~~ 165 (417)
...+|+|+|.. ......+.| ++|||||+|+||.++|+.|+.. |++|+++++ ...+ ..+.+.|+..
T Consensus 123 ~~~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~~g~~~- 192 (320)
T 1gdh_A 123 EKMIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEASYQATF- 192 (320)
T ss_dssp HHHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHHHTCEE-
T ss_pred HHHHHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhhcCcEE-
Confidence 44567888851 112358999 9999999999999999999988 999887776 5433 3556678763
Q ss_pred CCCcCCHHhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEec-c--ch----hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-G--FL----LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a-~~~Vl-~eI~p~Lk~GaiL~~a~-G--~~----i~~~~~~~i~~~~di~VI~v~ 236 (417)
..+.+|++++||+|++++|... ...++ ++..+.||+|++|+.++ | +. ...+.+..+. ....||+..+
T Consensus 193 ---~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~-gA~lDv~~~e 268 (320)
T 1gdh_A 193 ---HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA-YAGFDVFAGE 268 (320)
T ss_dssp ---CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTT
T ss_pred ---cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc-EEEEeCCCCC
Confidence 3478999999999999999765 34566 45788999999988664 4 11 1122221111 1245666667
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a~ 278 (417)
| |.. ..+|. .-+++++||.. .|.++.+...
T Consensus 269 P--~~~--~~L~~--------~~nviltPH~~~~t~~~~~~~~ 299 (320)
T 1gdh_A 269 P--NIN--EGYYD--------LPNTFLFPHIGSAATQAREDMA 299 (320)
T ss_dssp T--SCC--TTGGG--------CTTEEECSSCTTCBHHHHHHHH
T ss_pred C--CCC--Chhhh--------CCCEEECCcCCcCcHHHHHHHH
Confidence 7 211 12343 36789999874 3445544433
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=121.59 Aligned_cols=159 Identities=16% Similarity=0.060 Sum_probs=110.8
Q ss_pred hhhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 91 EYIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 91 e~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
...+|+|+|.... ....+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+. .
T Consensus 145 ~~~~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~ 210 (335)
T 2g76_A 145 TASMKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ-----Q 210 (335)
T ss_dssp HHHHHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE-----E
T ss_pred HHHHHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce-----e
Confidence 3456788996432 2368999 9999999999999999999988 9998776665333 456677876 3
Q ss_pred CCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEeccch-------hhhhhccccCCCCCCcEEEeccCCc
Q 014863 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~G~~-------i~~~~~~~i~~~~di~VI~v~Pn~p 240 (417)
.+.+|++++||+|++++|.... ..++ +++++.||+|++|+.++--. ...+++..+ -...+||+..+|. +
T Consensus 211 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i-~gA~lDV~~~EP~-~ 288 (335)
T 2g76_A 211 LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC-AGAALDVFTEEPP-R 288 (335)
T ss_dssp CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE-EEEEESCCSSSSC-S
T ss_pred CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCc-cEEEEeecCCCCC-C
Confidence 4889999999999999998764 4566 46889999999998765322 122222111 1124577888883 2
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014863 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 241 g~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~ 276 (417)
. ..+|.. -+++++||.. .+.++.+.
T Consensus 289 ~---~~L~~~--------~nvilTPH~~~~t~e~~~~ 314 (335)
T 2g76_A 289 D---RALVDH--------ENVISCPHLGASTKEAQSR 314 (335)
T ss_dssp C---CHHHHS--------TTEEECSSCTTCBHHHHHH
T ss_pred C---chHHhC--------CCEEECCcCCCCCHHHHHH
Confidence 2 245543 6788999864 44455443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=116.81 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC--C--------CcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d--~--------~~~~~~Eav~~ADi 181 (417)
+||+|||.|+||.++|..|.++ |++|.++.|.. .+...+.|+.... + ...+. +.++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence 7899999999999999999999 99988877753 3555667764311 0 01344 44789999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEE-EEeccch-hhhhhccccCCCCCCcEEEec------cCCchhhHHHHHhhccc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE 253 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~-i~~~~~~~i~~~~di~VI~v~------Pn~pg~~vr~ly~~G~e 253 (417)
||++||+.+..++++++.|+++++++| ++..|+. ...+.+ .+|++ +++..+ -.+|+.+. .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~-----~--- 140 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVH-----H--- 140 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEE-----E---
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEE-----E---
Confidence 999999999999999999999998865 4678985 444544 34443 555544 24455542 1
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 254 ~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.|.|... +......+.+..+.+.+++...|..
T Consensus 141 -~~~g~~~-ig~~~~~~~~~~~~l~~~l~~~g~~ 172 (312)
T 3hn2_A 141 -LGAGRII-LGEFLPRDTGRIEELAAMFRQAGVD 172 (312)
T ss_dssp -CEEEEEE-EEESSCCCSHHHHHHHHHHHHTTCC
T ss_pred -CCCCeEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 1234433 4443333445666777888888865
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-10 Score=122.49 Aligned_cols=211 Identities=11% Similarity=0.046 Sum_probs=131.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceec-------C--CCc
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTL 169 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------d--~~~ 169 (417)
.|+||+|||.|.||.++|.+|.+. |++|++++++.+ ..+.+.+ .|.... + ...
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 383 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS 383 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHH-HHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe
Confidence 358999999999999999999999 999888776533 3333211 232100 0 012
Q ss_pred CCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
.++ +++++||+||+++|.+.. .+++.++.++++++++|+ .++++.+..+.. .....-+++..|+--|...
T Consensus 384 ~d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~--- 456 (725)
T 2wtb_A 384 LDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI--- 456 (725)
T ss_dssp SSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT---
T ss_pred CCH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc---
Confidence 345 678999999999998764 368889999999999875 456777665544 2222237899998666543
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchH-HH-HHHHHHHHH
Q 014863 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HG-IVESLFRRF 324 (417)
Q Consensus 247 ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~-~a-~iea~~~~~ 324 (417)
+-...+.+....+.+..+.+..++..+|.. .+.. .+. .-| ++.-+ .+ +.|+ . .+
T Consensus 457 -----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-~v~v---~d~--~Gf-----i~Nril~~~~~Ea-~-~l 512 (725)
T 2wtb_A 457 -----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKT-PVVV---GNC--TGF-----AVNRMFFPYTQAA-M-FL 512 (725)
T ss_dssp -----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-EEEE---ESS--TTT-----THHHHHHHHHHHH-H-HH
T ss_pred -----------CceEEEEECCCCCHHHHHHHHHHHHHhCCE-EEEE---CCC--ccH-----HHHHHHHHHHHHH-H-HH
Confidence 112334557677899999999999999964 2211 110 111 22222 22 3444 3 34
Q ss_pred HHcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHHH
Q 014863 325 TENGMNEDLAYKNTVECIT--GIISKIISTQGMLAVY 359 (417)
Q Consensus 325 v~~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~l~ 359 (417)
++.|+++++..... ...- -|--.++-..|++..+
T Consensus 513 ~~~G~~~e~id~~~-~~~g~p~Gp~~l~D~vGld~~~ 548 (725)
T 2wtb_A 513 VECGADPYLIDRAI-SKFGMPMGPFRLCDLVGFGVAI 548 (725)
T ss_dssp HHTTCCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHH
T ss_pred HHCCCCHHHHHHHH-HHcCCCCCHHHHHHHhchHHHH
Confidence 45599998777654 3210 1334555566664444
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-10 Score=116.31 Aligned_cols=209 Identities=12% Similarity=0.074 Sum_probs=131.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceec-------CCCcCCH
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------d~~~~~~ 172 (417)
++||+|||+|.||.++|..|... |++|++.+++ ....+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 58999999999999999999999 9998877665 333333322 121000 0012355
Q ss_pred HhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEEE-eccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHh
Q 014863 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~~-a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (417)
+++++||+||+++|.... .+++.++.++++++++|+. +.++.+..+.. .....-+++..||-.|...
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 578999999999997653 5688899999999998764 34555555543 2233347999999877543
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHHcC
Q 014863 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENG 328 (417)
Q Consensus 250 ~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~~G 328 (417)
+-...+.+....+.+..+.+..++..+|... +.. .+ ..-| ++.-+.. ++..++ .+++.|
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v---~~--~~gf-----i~Nrll~~~~~ea~-~l~~~G 239 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIG-VVV---GN--CYGF-----VGNRMLAPYYNQGF-FLLEEG 239 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEB---CC--STTT-----THHHHHHHHHHHHH-HHHHTT
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEE-EEE---CC--CccH-----HHHHHHHHHHHHHH-HHHHcC
Confidence 1223355677788999999999999999642 111 11 1111 2222222 332233 445669
Q ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHhcHHH
Q 014863 329 MNEDLAYKNTVECIT--GIISKIISTQGMLA 357 (417)
Q Consensus 329 l~~e~A~~~~~~~l~--~~~~~li~e~G~~~ 357 (417)
+++++.....- .+- -|-..+.-..|++.
T Consensus 240 ~~~~~id~~~~-~~g~p~Gp~~l~D~~GlD~ 269 (463)
T 1zcj_A 240 SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDV 269 (463)
T ss_dssp CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHH
T ss_pred CCHHHHHHHHH-HcCCCCcHHHHHHHcchHH
Confidence 99988665442 110 13455666667643
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=113.46 Aligned_cols=139 Identities=17% Similarity=0.145 Sum_probs=92.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.+ +||+|||+|+||.++|..|.+. |++|++++|... +++++|+|+++
T Consensus 15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~a 64 (209)
T 2raf_A 15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEEC
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEc
Confidence 34566 8999999999999999999999 999887765422 35689999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEE-eccch---------------hhhhhccccCCCCCCcEEE-eccCCchhhHHHHH
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGL-SHGFL---------------LGHLQSMGLDFPKNIGVIA-VCPKGMGPSVRRLY 248 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~-a~G~~---------------i~~~~~~~i~~~~di~VI~-v~Pn~pg~~vr~ly 248 (417)
+|++...++++++.+.++ +++|++ +.|+. ...+++ .+| +.+++. ++|. .++.....-
T Consensus 65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~-~~p~~~~~~ 138 (209)
T 2raf_A 65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNTT-FAATLQSGQ 138 (209)
T ss_dssp SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTTS-CHHHHHHSE
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeecc-cHhhccccc
Confidence 999888999999999888 887764 45664 233433 344 467888 4442 222211100
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.. |.+... +.+.. .+.++.+.+..++..+|..
T Consensus 139 ~~-----g~~~~~-~~~~g-~~~~~~~~v~~ll~~~G~~ 170 (209)
T 2raf_A 139 VN-----GKEPTT-VLVAG-NDDSAKQRFTRALADSPLE 170 (209)
T ss_dssp ET-----TTEECE-EEEEE-SCHHHHHHHHHHTTTSSCE
T ss_pred cC-----CCCCce-eEEcC-CCHHHHHHHHHHHHHcCCc
Confidence 01 112222 22222 2568899999999999963
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-11 Score=109.93 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=99.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
+||+|||+|.||.+++.+|.+. |++|++.+|+. +..+...+.|+.. .+.+++++++|+|++++|++..
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNP-KRTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSH-HHHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999998 98888777653 3334444446663 3788899999999999999876
Q ss_pred HHHHHHHHhcCCCCcEEE-Eeccchhhhh----------hccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHL----------QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~----------~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
.++++ +.+.+ ++++|+ .+.|..+..+ .. .+| +.+|++.+ |...... ...|-. .|-+
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~~~~~---~~~~~~---~g~~ 163 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVISAWT---LQAGPR---DGNR 163 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTBCHHH---HHTCSC---SSCC
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccccHhH---hccccc---CCce
Confidence 67775 66666 788766 5566654322 22 344 45788877 4432221 111110 1222
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++... .+.++.+.+..++..+|..
T Consensus 164 ~~~~~g--~~~~~~~~v~~ll~~~G~~ 188 (215)
T 2vns_A 164 QVPICG--DQPEAKRAVSEMALAMGFM 188 (215)
T ss_dssp EEEEEE--SCHHHHHHHHHHHHHTTCE
T ss_pred eEEEec--CCHHHHHHHHHHHHHcCCc
Confidence 222223 2678999999999999964
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.8e-11 Score=118.48 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=97.1
Q ss_pred hhhhccCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC
Q 014863 91 EYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 91 e~~~~~g~~~f~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~ 167 (417)
+..+|+|+|... .....+.| |||||||+|+||.++|+.++.. |++|+++++...+ ..++..
T Consensus 149 ~~~~~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~~~~--- 212 (340)
T 4dgs_A 149 DRLVREGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVDWIA--- 212 (340)
T ss_dssp HHHHHTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSCCEE---
T ss_pred HHHHhcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccCcee---
Confidence 445778888653 11278999 9999999999999999999988 9998877765332 234443
Q ss_pred CcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccC
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn 238 (417)
..+.+|++++||+|++++|.... ..++ +++++.||+|++|+.++ |-. +..+++ +..-....||.--.|.
T Consensus 213 -~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDVf~~EP~ 290 (340)
T 4dgs_A 213 -HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKS-GTIAGAGLDVFVNEPA 290 (340)
T ss_dssp -CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------CCSSEEEESCCSSSSS
T ss_pred -cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCceEEEeCCcCCCCC
Confidence 46899999999999999996655 4566 57889999999988664 321 111221 1111234566666774
Q ss_pred CchhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHH
Q 014863 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (417)
Q Consensus 239 ~pg~~vr~ly~~G~e~~G~Gv~~liav~q-d~sgea~e~ 276 (417)
.+. .++.. -+.+++||- ..|.++.+.
T Consensus 291 ~~~----~L~~~--------~nvilTPHia~~t~e~~~~ 317 (340)
T 4dgs_A 291 IRS----EFHTT--------PNTVLMPHQGSATVETRMA 317 (340)
T ss_dssp CCS----HHHHS--------SSEEECSSCSSCCHHHHHH
T ss_pred Ccc----chhhC--------CCEEEcCcCCcCCHHHHHH
Confidence 432 34443 467888886 344454443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-11 Score=119.79 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=85.1
Q ss_pred hhhccCcccccc-----------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc
Q 014863 92 YIVRGGRDLFNL-----------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (417)
Q Consensus 92 ~~~~~g~~~f~~-----------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~ 160 (417)
..+|+|+|.... ....+.| ++|||||+|.||.++|+.|+.. |++|+++++. ...+.+.+.
T Consensus 131 ~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~--~~~~~~~~~ 201 (352)
T 3gg9_A 131 ASLKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE--NSKERARAD 201 (352)
T ss_dssp HHHHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH--HHHHHHHHT
T ss_pred HHHHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC--CCHHHHHhc
Confidence 345677775431 2368999 9999999999999999999988 9998776654 234566778
Q ss_pred CceecCCCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 161 G~~~~d~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
|+.. +.+.+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 202 g~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 251 (352)
T 3gg9_A 202 GFAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTS 251 (352)
T ss_dssp TCEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred CceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence 8874 45899999999999999997654 3455 46889999999999776
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.2e-10 Score=113.09 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=120.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-------------------cC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~d~~~~~ 171 (417)
|||+|||+|.||.++|..|.+. |++|++.++. .+..+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVS-STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999999 9998766554 333333332 23 332 457
Q ss_pred HHhhhccCCeEEEeecchh----------HHHHHHHHHhcCCC---CcEEEEeccchh----h----hhhcc-ccCCCCC
Q 014863 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLL----G----HLQSM-GLDFPKN 229 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a----------~~~Vl~eI~p~Lk~---GaiL~~a~G~~i----~----~~~~~-~i~~~~d 229 (417)
+++++++||+||+|+|... ..+++++|.+++++ +++|++.+++.. . .+... +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 8888999999999998655 67888999999999 898876544321 1 12110 1111112
Q ss_pred CcEEEeccCC--chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccc
Q 014863 230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (417)
Q Consensus 230 i~VI~v~Pn~--pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqt 307 (417)
. .+...|.. ||..+.+++. .+.++ +.. .++++.+.+..++..+|.. ++.++.. ..+..-+.+.+
T Consensus 150 ~-~v~~~Pe~~~~G~~~~~~~~---------~~~iv-~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~-~ae~~Kl~~N~ 215 (436)
T 1mv8_A 150 F-GVGTNPEFLRESTAIKDYDF---------PPMTV-IGE-LDKQTGDLLEEIYRELDAP-IIRKTVE-VAEMIKYTCNV 215 (436)
T ss_dssp B-EEEECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTSSSC-EEEEEHH-HHHHHHHHHHH
T ss_pred E-EEEECcccccccccchhccC---------CCEEE-EEc-CCHHHHHHHHHHHhccCCC-EEcCCHH-HHHHHHHHHHH
Confidence 2 34456643 3444333322 11222 222 2578889999999999863 2223221 11111111111
Q ss_pred cccchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 308 ILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 308 vL~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
.....-+++..+...+.+.|+++++....
T Consensus 216 -~~a~~ia~~nE~~~l~~~~Gid~~~v~~~ 244 (436)
T 1mv8_A 216 -WHAAKVTFANEIGNIAKAVGVDGREVMDV 244 (436)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 11112346677788888999998776553
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-11 Score=118.77 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=83.7
Q ss_pred hhhccCccc-c--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 92 YIVRGGRDL-F--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~~~~g~~~-f--~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
..+|+|+|. + ......+.| +||||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+.
T Consensus 124 ~~~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~----- 190 (330)
T 4e5n_A 124 AFVRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLGLR----- 190 (330)
T ss_dssp HHHHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHTEE-----
T ss_pred HHHHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcCce-----
Confidence 456777775 2 112367899 9999999999999999999888 99987766653 234556667876
Q ss_pred cCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
..+.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 191 ~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 236 (330)
T 4e5n_A 191 QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236 (330)
T ss_dssp ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 35899999999999999996544 4455 47889999999998775
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.3e-11 Score=117.71 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=82.5
Q ss_pred hhhhccCccccc----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC
Q 014863 91 EYIVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 91 e~~~~~g~~~f~----~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
+..+|+|+|... .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .+.+ .|...
T Consensus 150 ~~~~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~~~~--~g~~~-- 217 (345)
T 4g2n_A 150 DRMVRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRLS-HALE--EGAIY-- 217 (345)
T ss_dssp HHHHHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCCC-HHHH--TTCEE--
T ss_pred HHHHHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCcc-hhhh--cCCeE--
Confidence 345678888631 12378999 9999999999999999999988 9998777665322 2222 26663
Q ss_pred CCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
+.+.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 218 --~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 218 --HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp --CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred --eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 45899999999999999996544 4555 46888999999999775
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-11 Score=116.17 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=103.0
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..+|+|+|..... ..+.| +||||||+|+||.++|+.|+.. |++|+++++...+. + .+.. ..+
T Consensus 105 ~~~~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~-----~~~~----~~~ 166 (290)
T 3gvx_A 105 ELMKAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ-N-----VDVI----SES 166 (290)
T ss_dssp HHHHTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT-T-----CSEE----CSS
T ss_pred hHhhhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc-c-----cccc----cCC
Confidence 3467888876543 67999 9999999999999999999998 99988776653321 1 1332 458
Q ss_pred HHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchh
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++ |-. +..+++.. ......||....|..|
T Consensus 167 l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~p-- 243 (290)
T 3gvx_A 167 PADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERS-DVWYLSDVWWNEPEIT-- 243 (290)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCT-TCEEEESCCTTTTSCC--
T ss_pred hHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhcc-ceEEeeccccCCcccc--
Confidence 99999999999999996544 4555 56889999999999776 321 12233211 1123456666666411
Q ss_pred hHHHHHhhcccccCCCceEEEeecC--CCCHHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~q--d~sgea~e~ 276 (417)
++ .--+.+++||- ..+.++.+.
T Consensus 244 ----L~--------~~~nvilTPHiag~~t~e~~~~ 267 (290)
T 3gvx_A 244 ----ET--------NLRNAILSPHVAGGMSGEIMDI 267 (290)
T ss_dssp ----SC--------CCSSEEECCSCSSCBTTBCCHH
T ss_pred ----hh--------hhhhhhcCccccCCccchHHHH
Confidence 11 22577899983 344444433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=8.9e-11 Score=118.09 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=85.7
Q ss_pred hhhccCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 92 YIVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~~~~g~~~f~~---~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
..+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+..
T Consensus 143 ~~~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~---- 210 (351)
T 3jtm_A 143 NQVVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRLQ-MAPELEKETGAKF---- 210 (351)
T ss_dssp HHHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSSC-CCHHHHHHHCCEE----
T ss_pred HHHHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCCc-cCHHHHHhCCCeE----
Confidence 456788886432 2357999 9999999999999999999988 99987766553 3455666678774
Q ss_pred cCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
+.+.+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 211 ~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 256 (351)
T 3jtm_A 211 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256 (351)
T ss_dssp CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence 56899999999999999996543 4555 46888999999998775
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.12 E-value=8e-10 Score=114.24 Aligned_cols=203 Identities=13% Similarity=0.111 Sum_probs=123.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-------------------cC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~d~~~~~ 171 (417)
|||+|||+|.||.++|.+|.+. |++|+++++. ....+...+ .| +.. ..+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 6999999999999999999999 9998776655 333333322 12 222 467
Q ss_pred HHhhhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhccccCCCCCCc-EE
Q 014863 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIG-VI 233 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~----------a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~-------~~~~~~i~~~~di~-VI 233 (417)
+++++++||+||+++|.. ...+++++|.+++++|++|++.+++... .+.+.......+.+ .+
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v 151 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDI 151 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeE
Confidence 889999999999999977 6778999999999999998887755311 11110001111122 35
Q ss_pred EeccCCc--hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC--cccccchhhhhhhhcccccccc
Q 014863 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGIL 309 (417)
Q Consensus 234 ~v~Pn~p--g~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~--~~iett~~~E~~~dlfgeqtvL 309 (417)
...|... |..+++... .+.++ +.. .+.++.+.+..++..++.. .++.++. ...+.--+.+.+ +
T Consensus 152 ~~~Pe~a~eG~~~~~~~~---------p~~iv-vG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~-~ 218 (450)
T 3gg2_A 152 ASNPEFLKEGNAIDDFMK---------PDRVV-VGV-DSDRARELITSLYKPMLLNNFRVLFMDI-ASAEMTKYAANA-M 218 (450)
T ss_dssp EECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTTCCSCCCEEEECH-HHHHHHHHHHHH-H
T ss_pred EechhhhcccchhhhccC---------CCEEE-EEc-CCHHHHHHHHHHHHHHhcCCCeEEecCH-HHHHHHHHHHHH-H
Confidence 5667532 222222111 12222 222 2568899999999998862 2222221 122222232332 1
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
....-+++.-+...+.+.|+++++.+..+
T Consensus 219 ~a~~ia~~nE~~~l~~~~Gid~~~v~~~~ 247 (450)
T 3gg2_A 219 LATRISFMNDVANLCERVGADVSMVRLGI 247 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 22233356667778888899988776644
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.1e-11 Score=117.04 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=83.0
Q ss_pred hhhhccCccc-----cc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc
Q 014863 91 EYIVRGGRDL-----FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 91 e~~~~~g~~~-----f~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (417)
...+|+|+|. +. .....+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+
T Consensus 123 ~~~~~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~ 193 (334)
T 2dbq_A 123 DRFVRSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVERELNA 193 (334)
T ss_dssp HHHHHTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHHCC
T ss_pred HHHHHcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhHhhcCc
Confidence 3446677774 11 11257899 9999999999999999999988 9998777765433 45556677
Q ss_pred eecCCCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 163 TEENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 163 ~~~d~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
. ..+.++++++||+|++++|+... ..++ +++.+.|++|++|+.++
T Consensus 194 ~-----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 194 E-----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred c-----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 5 35788999999999999998874 4566 46788999999987554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=8.4e-11 Score=115.78 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=80.9
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..+|+|+|........+.| ++|||||+|+||.++|+.|+.. |++|+++++... +. +... ..+
T Consensus 106 ~~~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~~----~~~~----~~~ 167 (303)
T 1qp8_A 106 EKMKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---EG----PWRF----TNS 167 (303)
T ss_dssp HHHHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---CS----SSCC----BSC
T ss_pred HHHHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---cc----Cccc----CCC
Confidence 4567888854322347999 9999999999999999999988 999877666533 11 3332 457
Q ss_pred HHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEecc
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHG 213 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~G 213 (417)
.++++++||+|++++|.... ..++. ++++.||+|++|+.++-
T Consensus 168 l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 168 LEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp SHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred HHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCC
Confidence 88999999999999998754 56664 68899999999997764
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-11 Score=117.98 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=82.9
Q ss_pred hhhccCcccccc--------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 92 YIVRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 92 ~~~~~g~~~f~~--------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
..+|+|+|.... +...+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ ..+.+.|+.
T Consensus 142 ~~~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 212 (347)
T 1mx3_A 142 QALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVERALGLQ 212 (347)
T ss_dssp HHHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHHHHTCE
T ss_pred HHHHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhHhhcCCe
Confidence 346778874221 1257899 9999999999999999999988 9998877765433 234556775
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
. +.+.+|++++||+|++++|+... ..++ ++.++.||+|++|+.++
T Consensus 213 ~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 259 (347)
T 1mx3_A 213 R----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTA 259 (347)
T ss_dssp E----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred e----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECC
Confidence 3 45889999999999999998644 4566 56788999999988665
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=114.29 Aligned_cols=154 Identities=21% Similarity=0.169 Sum_probs=102.9
Q ss_pred hhhhccCcccc-c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC
Q 014863 91 EYIVRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 91 e~~~~~g~~~f-~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
...+|+|+|.. . .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+.. +.
T Consensus 121 ~~~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~~-------~~--- 183 (311)
T 2cuk_A 121 AAYARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPLP-------YP--- 183 (311)
T ss_dssp HHHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSS-------SC---
T ss_pred HHHHHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCcccc-------cc---
Confidence 44567888852 1 12357999 9999999999999999999988 999877766543321 22
Q ss_pred CCcCCHHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEeccchh-------hhhhccccCCCCCCcEEEecc
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~G~~i-------~~~~~~~i~~~~di~VI~v~P 237 (417)
..+.++++++||+|++++|+... ..++. +..+.||+|++|+.++--.+ ..+. +......+||+..+|
T Consensus 184 --~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~--g~i~ga~lDv~~~eP 259 (311)
T 2cuk_A 184 --FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR--GHLFGAGLDVTDPEP 259 (311)
T ss_dssp --BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT--TTSSEEEESSCSSSS
T ss_pred --cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh--CcCCEEEEeeCCCCC
Confidence 35789999999999999998754 56664 67789999999886653321 1121 111112456777777
Q ss_pred CCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014863 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 238 n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~ 276 (417)
..+.+ .+|. .-+.+++||.. .|.++.+.
T Consensus 260 ~~~~~---~L~~--------~~nviltPh~~~~t~~~~~~ 288 (311)
T 2cuk_A 260 LPPGH---PLYA--------LPNAVITPHIGSAGRTTRER 288 (311)
T ss_dssp CCTTS---GGGG--------CTTEEECCSCTTCBHHHHHH
T ss_pred CCCCC---hhhh--------CCCEEECCcCCCCCHHHHHH
Confidence 32222 2343 36888999874 34444333
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=118.45 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=106.5
Q ss_pred hhhhccCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC
Q 014863 91 EYIVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 91 e~~~~~g~~~f~~---~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~ 167 (417)
...+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++... ..+.+.+.|+..
T Consensus 169 ~~~~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~~-~~~~~~~~G~~~--- 237 (393)
T 2nac_A 169 HEWARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHRL-PESVEKELNLTW--- 237 (393)
T ss_dssp HHHHHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCC-CHHHHHHHTCEE---
T ss_pred HHHHHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCcc-chhhHhhcCcee---
Confidence 3457788996321 1257899 9999999999999999999988 999877666532 345566678764
Q ss_pred CcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccC
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn 238 (417)
..+.++++++||+|++++|.... ..++ ++.++.||+|++|+.++ |-. ...+.+..+ -...+||+...|.
T Consensus 238 -~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~gA~lDV~~~EP~ 315 (393)
T 2nac_A 238 -HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL-AGYAGDVWFPQPA 315 (393)
T ss_dssp -CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE-EEEEESCCSSSSC
T ss_pred -cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCe-eEEEEEecCCCCC
Confidence 35789999999999999996543 4666 46888999999988664 321 112222111 1124566666674
Q ss_pred CchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 014863 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (417)
Q Consensus 239 ~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e 275 (417)
.+.+- ++. --+.+++||.. .+.++.+
T Consensus 316 ~~~~p---L~~--------~~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 316 PKDHP---WRT--------MPYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp CTTCG---GGT--------STTBCCCCSCTTCSHHHHH
T ss_pred CCCCh---hHc--------CCCEEECCCCCcCcHHHHH
Confidence 32222 222 24567888863 3444443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=117.25 Aligned_cols=110 Identities=15% Similarity=0.041 Sum_probs=85.3
Q ss_pred hhhhccCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecC
Q 014863 91 EYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 91 e~~~~~g~~~f~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
...+|+|+|... .....+.| ++|||||+|+||.++|+.|+.. |++ |+++++.. ...+.+.+.|+..
T Consensus 142 ~~~~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~-~~~~~~~~~g~~~-- 211 (364)
T 2j6i_A 142 HEQIINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQA-LPKDAEEKVGARR-- 211 (364)
T ss_dssp HHHHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSC-CCHHHHHHTTEEE--
T ss_pred HHHHHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCc-cchhHHHhcCcEe--
Confidence 345678888642 12367999 9999999999999999999988 996 87766543 2345666778764
Q ss_pred CCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
+.+.++++++||+|++++|.... ..++ ++.++.|++|++|+.++
T Consensus 212 --~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~a 257 (364)
T 2j6i_A 212 --VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257 (364)
T ss_dssp --CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred --cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECC
Confidence 45899999999999999998754 4566 46789999999888664
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=115.94 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=105.5
Q ss_pred hhhhccCccccc----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC
Q 014863 91 EYIVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 91 e~~~~~g~~~f~----~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
+..+|+|+|.+. .....+.| ++|||||+|.||.++|+.++.. |++|+++++.. ..+.+.+.|+.
T Consensus 153 ~~~~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~--- 220 (365)
T 4hy3_A 153 DIAFQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEENGVE--- 220 (365)
T ss_dssp HHHHHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHTTCE---
T ss_pred HHHHHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhcCee---
Confidence 344677774322 12468999 9999999999999999999888 99987766652 34556677887
Q ss_pred CCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEecc
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~P 237 (417)
..+.+|++++||+|++++|.... ..++ .+.+..||+|++|+.++ |-. +..+++..+. ..+||.--.|
T Consensus 221 --~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~--aaLDV~~~EP 296 (365)
T 4hy3_A 221 --PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV--AASDVYPEEP 296 (365)
T ss_dssp --ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE--EEESCCSSSS
T ss_pred --eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce--EEeeCCCCCC
Confidence 35899999999999999997654 4556 46889999999999775 321 2233332222 3455555555
Q ss_pred CCchhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHH
Q 014863 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (417)
Q Consensus 238 n~pg~~vr~ly~~G~e~~G~Gv~~liav~q-d~sgea~e~ 276 (417)
--+.+- ++. --+.+++||- ..+.++.+.
T Consensus 297 l~~~~p---L~~--------~~nvilTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 297 LPLDHP---VRS--------LKGFIRSAHRAGALDSAFKK 325 (365)
T ss_dssp CCTTCG---GGT--------CTTEEECCSCSSCCHHHHHH
T ss_pred CCCCCh---hhc--------CCCEEECCccccCHHHHHHH
Confidence 322221 222 1467888886 345555433
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=116.60 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=103.2
Q ss_pred hhhhccCcccccc--cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 91 EYIVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 91 e~~~~~g~~~f~~--~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
+..+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. .|+..
T Consensus 143 ~~~~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~~~---- 205 (333)
T 3ba1_A 143 DKYVRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNYTY---- 205 (333)
T ss_dssp HHHHHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCSEE----
T ss_pred HHHHHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCcee----
Confidence 4456788886421 1368999 9999999999999999999988 99988777654321 25553
Q ss_pred cCCHHhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEec-cchh------hhhhccccCCCCCCcEEEeccCC
Q 014863 169 LGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVCPKG 239 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a-~~~Vl-~eI~p~Lk~GaiL~~a~-G~~i------~~~~~~~i~~~~di~VI~v~Pn~ 239 (417)
..+.++++++||+|++++|+.. ...++ +++.+.|++|++|+.++ |..+ ..+.+..+ -...+||+..+|.-
T Consensus 206 ~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i-~ga~lDv~~~EP~~ 284 (333)
T 3ba1_A 206 YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL-GGAGLDVFEREPEV 284 (333)
T ss_dssp ESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSS-CEEEESCCTTTTCC
T ss_pred cCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCC-eEEEEecCCCCCCC
Confidence 4688999999999999999864 45666 46778899999988554 4321 12222111 01245676667742
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e 275 (417)
+ . .++. ..+.+++||.. .+.++.+
T Consensus 285 ~-~---~L~~--------~~nviltPH~~~~t~e~~~ 309 (333)
T 3ba1_A 285 P-E---KLFG--------LENVVLLPHVGSGTVETRK 309 (333)
T ss_dssp C-G---GGGG--------CTTEEECSSCTTCSHHHHH
T ss_pred c-c---hhhc--------CCCEEECCcCCCCCHHHHH
Confidence 2 2 2332 26778888863 3444443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=115.73 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=81.6
Q ss_pred hhhhccCcccc----ccc---ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 91 EYIVRGGRDLF----NLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 91 e~~~~~g~~~f----~~~---~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
...+|+|+|.. ..+ ...+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+.
T Consensus 120 ~~~~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 190 (333)
T 2d0i_A 120 DKFIRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVEKELKAR 190 (333)
T ss_dssp HHHHHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHHHHHTEE
T ss_pred HHHHHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce
Confidence 34567788842 111 157899 9999999999999999999988 9998777665433 555566776
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecch-hHHHHHH-HHHhcCCCCcEEEEec
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~-a~~~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
. .+.++++++||+|++++|.. ....++. ++.+.|++| +|+.++
T Consensus 191 ~-----~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 191 Y-----MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp E-----CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred e-----cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECC
Confidence 3 47889999999999999988 4456664 577889999 887654
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=114.10 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=83.9
Q ss_pred hhhhccCc---ccc-c----ccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHHHHcC
Q 014863 91 EYIVRGGR---DLF-N----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (417)
Q Consensus 91 e~~~~~g~---~~f-~----~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (417)
...+|+|+ |.. . .....+.| ++|||||+|.||.++|+.++ .. |++|+++++.. ...+.+.+.|
T Consensus 136 ~~~~~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~-~~~~~~~~~g 207 (348)
T 2w2k_A 136 ERAARTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAP-ADAETEKALG 207 (348)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSC-CCHHHHHHHT
T ss_pred HHHHHcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCC-cchhhHhhcC
Confidence 44567788 831 1 12367999 99999999999999999999 88 99987766553 3344455567
Q ss_pred ceecCCCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEecc
Q 014863 162 FTEENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 162 ~~~~d~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~G 213 (417)
+.. +.+.++++++||+|++++|+... ..++ .++.+.|++|++|+.++.
T Consensus 208 ~~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~sr 257 (348)
T 2w2k_A 208 AER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257 (348)
T ss_dssp CEE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred cEE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence 764 34788999999999999998754 4565 467788999999886654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=113.17 Aligned_cols=109 Identities=18% Similarity=0.137 Sum_probs=83.4
Q ss_pred hhhhccCcccc-c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC
Q 014863 91 EYIVRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 91 e~~~~~g~~~f-~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
...+|+|+|.. . .....+.| +||||||+|.||.++|+.|+.. |++|+++++... ..+.+.+.|+..
T Consensus 132 ~~~~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~-- 201 (330)
T 2gcg_A 132 IEEVKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQP-RPEEAAEFQAEF-- 201 (330)
T ss_dssp HHHHHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSC-CHHHHHTTTCEE--
T ss_pred HHHHHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-chhHHHhcCcee--
Confidence 34567788853 1 11267899 9999999999999999999988 999887776533 344455667763
Q ss_pred CCcCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
. +.++++++||+|++++|+... ..++ +++.+.|++|++|+.++
T Consensus 202 --~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~s 246 (330)
T 2gcg_A 202 --V-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246 (330)
T ss_dssp --C-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred --C-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 3 888999999999999998754 4555 46788999999887654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=106.93 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=100.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC---C--------CcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d---~--------~~~~~~Eav~~AD 180 (417)
+||+|||.|+||.++|..|.++ |++|.+..|.. .+...+.|+...+ + .+.+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999999 99998887753 2455555653211 0 1245666666899
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEE-EEeccch-hhhhhccccCCCCCCcEEEecc------CCchhhHHHHHhhcc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~-i~~~~~~~i~~~~di~VI~v~P------n~pg~~vr~ly~~G~ 252 (417)
+||++||..+..++++++.|+++++++| ++..|+. ...+.+ .+|.+ .|+.... ..|+.+. .+
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~-----~~- 143 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIW-----HQ- 143 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEE-----EE-
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEE-----EC-
Confidence 9999999999999999999999988864 5778986 344544 34443 4443222 2234431 11
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
|.|... +......+.+..+...+++...|..
T Consensus 144 ---~~~~~~-ig~~~~~~~~~~~~l~~~l~~~~~~ 174 (320)
T 3i83_A 144 ---AYGRLM-LGNYPGGVSERVKTLAAAFEEAGID 174 (320)
T ss_dssp ---EEEEEE-EEESSSCCCHHHHHHHHHHHHTTSC
T ss_pred ---CCCEEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 122222 3322222335556667788887765
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-10 Score=108.45 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=74.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC---------CCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d---------~~~~~~~Eav~~ADiV 182 (417)
+||+|||+|+||.++|..|.++ |++|.+..|. +..+...+.|+.... ....+.++ ++++|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999999 9998887764 345666677775310 01235555 5899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~ 214 (417)
|++||+.+..++++++.|+++++++|+ +..|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999988999999999999998755 66785
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.5e-11 Score=117.38 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=81.0
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..... .++... ....+
T Consensus 122 ~~~~~g~W~~~~~-~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~~-~~~~~ 186 (315)
T 3pp8_A 122 ALKNQALWKPLPE-YTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVESY-VGREE 186 (315)
T ss_dssp HHHHTTCCCCCCC-CCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEEE-ESHHH
T ss_pred HHHHhcccCCCCC-CCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhhh-cccCC
Confidence 3467788976544 78999 9999999999999999999988 99988777654321 233210 00246
Q ss_pred HHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 187 l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 229 (315)
T 3pp8_A 187 LRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA 229 (315)
T ss_dssp HHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECC
Confidence 88999999999999996544 4566 57889999999998765
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-11 Score=116.83 Aligned_cols=151 Identities=12% Similarity=0.101 Sum_probs=100.4
Q ss_pred hhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 91 EYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 91 e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
...+|+|+|........+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. +.+ ..... ..
T Consensus 118 ~~~~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~~ 183 (324)
T 3evt_A 118 LNQRGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----FT 183 (324)
T ss_dssp HHHTTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----GG
T ss_pred HHHHhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----cC
Confidence 44567889976543478999 9999999999999999999988 99988777653321 111 11112 35
Q ss_pred CHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCch
Q 014863 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg 241 (417)
+.+|++++||+|++++|.... ..++ .+.+..||+|++|+.++ |-. +..+++..+ -....||.-..|.-+.
T Consensus 184 ~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i-~gA~lDV~~~EPl~~~ 262 (324)
T 3evt_A 184 ATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQL-SMAALDVTEPEPLPTD 262 (324)
T ss_dssp GCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSC-SEEEESSCSSSSCCTT
T ss_pred CHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCc-eEEEeCCCCCCCCCCC
Confidence 788999999999999996554 4555 46888999999999775 321 222332111 1234566666663322
Q ss_pred hhHHHHHhhcccccCCCceEEEeecC
Q 014863 242 PSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 242 ~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
+- ++.. -+.+++||-
T Consensus 263 ~p---L~~~--------~nvilTPHi 277 (324)
T 3evt_A 263 HP---LWQR--------DDVLITPHI 277 (324)
T ss_dssp CG---GGGC--------SSEEECCSC
T ss_pred Ch---hhcC--------CCEEEcCcc
Confidence 21 2221 467888886
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=113.23 Aligned_cols=207 Identities=12% Similarity=0.068 Sum_probs=118.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-------------------CceecCCCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------------G~~~~d~~~~~ 171 (417)
|+||+|||+|.||.++|.+|.+. |.|++|+++++. ....+...+. ++.. ..+
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~ 79 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMN-TAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSD 79 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999887 224687766554 3333333221 1221 346
Q ss_pred HHhhhccCCeEEEeecchh---------------HHHHHHHHHhcCCCCcEEEEeccchh---hh----hhc-cccCCCC
Q 014863 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLL---GH----LQS-MGLDFPK 228 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a---------------~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~----~~~-~~i~~~~ 228 (417)
+.+++++||+||+++|... ..+++++|.+++++|++|++.+.+.. .. +.+ .++. .
T Consensus 80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~--~ 157 (481)
T 2o3j_A 80 IPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNN--E 157 (481)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC-----
T ss_pred HHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC--c
Confidence 7788999999999987532 56788889999999999887654431 11 111 1110 1
Q ss_pred CCc-EEEeccC--CchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHHHHHHHhCC-Ccccccchhhhhhhhcc
Q 014863 229 NIG-VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIF 303 (417)
Q Consensus 229 di~-VI~v~Pn--~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a~al~~aiG~-~~~iett~~~E~~~dlf 303 (417)
+++ .+..+|. .||..+.+++.- -..++....+ .+.++.+.+..++..+|. ...+.++. ...+.--+
T Consensus 158 ~~d~~v~~~Pe~~~~G~a~~~~~~~--------~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~-~~ae~~Kl 228 (481)
T 2o3j_A 158 NLKFQVLSNPEFLAEGTAMKDLANP--------DRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNT-WSSELSKL 228 (481)
T ss_dssp -CCEEEEECCCCCCTTCHHHHHHSC--------SCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEH-HHHHHHHH
T ss_pred CCceEEEeCcccccccchhhcccCC--------CEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCH-HHHHHHHH
Confidence 233 3677885 344444333321 1222222211 122577888999999985 22222221 11222222
Q ss_pred cccccccchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 304 GERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 304 geqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
-+.+. ....-+++.-+...+.+.|++.++....+
T Consensus 229 ~~N~~-~a~~ia~~nE~~~la~~~Gid~~~v~~~~ 262 (481)
T 2o3j_A 229 VANAF-LAQRISSINSISAVCEATGAEISEVAHAV 262 (481)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 22221 12223356667777788888888776543
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=106.20 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=77.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC---------CCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d---------~~~~~~~Eav~~ADiV 182 (417)
+||+|||.|+||.++|..|.++ |++|.++ ++ ++..+...+.|..... ....+. +.++++|+|
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 90 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV 90 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence 8999999999999999999999 9998877 54 4445555666654310 002344 346899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccchh-hhhhc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQS 221 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i-~~~~~ 221 (417)
|++||+....++++++.|+++++++| +...|+.. ..+.+
T Consensus 91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~ 131 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS 131 (318)
T ss_dssp EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence 99999999999999999999999865 47789875 34433
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.8e-11 Score=117.36 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=99.4
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..... ..+ .+... ..+
T Consensus 123 ~~~~~g~W~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~~----~~~ 187 (324)
T 3hg7_A 123 EQQKQRLWQSHPY-QGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVYQ----LPA 187 (324)
T ss_dssp HHHHTTCCCCCCC-CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEEC----GGG
T ss_pred HHHhhCCCcCCCC-ccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hcccc----cCC
Confidence 3467889976544 68999 9999999999999999999988 99988776653221 111 11111 457
Q ss_pred HHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchh
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++..+ -...+||.-..|--+.+
T Consensus 188 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~ga~lDV~~~EPl~~~~ 266 (324)
T 3hg7_A 188 LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKL-GMAVLDVFEQEPLPADS 266 (324)
T ss_dssp HHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSS-SEEEESCCSSSSCCTTC
T ss_pred HHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCc-eEEEeccCCCCCCCCCC
Confidence 89999999999999996544 44553 6788899999999775 321 222333111 12345666666633222
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
- ++. --+.+++||--
T Consensus 267 p---L~~--------~~nvilTPHia 281 (324)
T 3hg7_A 267 P---LWG--------QPNLIITPHNS 281 (324)
T ss_dssp T---TTT--------CTTEEECCSCS
T ss_pred h---hhc--------CCCEEEeCCCc
Confidence 1 111 14678888863
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-09 Score=106.27 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=121.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-------------------cC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~d~~~~~ 171 (417)
-+|+|||+|.||.++|.+|.+. |++|+++++..++ .+...+ .| +.. ..+
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~k-v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~----ttd 77 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARK-IELLHQNVMPIYEPGLDALVASNVKAGRLSF----TTD 77 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred eEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHhcCCCCccCCCHHHHHHhhcccCCEEE----ECC
Confidence 6899999999999999999999 9999877766443 333222 12 222 468
Q ss_pred HHhhhccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccchhh-------hhhccccCCCCCCcEE
Q 014863 172 IYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVI 233 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~-----------a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~-------~~~~~~i~~~~di~VI 233 (417)
+++++++||+||+|||.. ...++++.|.+++++|++|++.+++... .+.+. ....++ .+
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d~-~v 154 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSGA-KV 154 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSCC-EE
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCCc-eE
Confidence 889999999999997744 3678889999999999999887765321 12221 111232 45
Q ss_pred EeccCCc--hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccc
Q 014863 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGIL 309 (417)
Q Consensus 234 ~v~Pn~p--g~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL 309 (417)
...|... |..+++... .+.++ +.. .+.++.+.+..++..++... .+..+-....+.--+.+.+.
T Consensus 155 ~~~Pe~a~eG~a~~d~~~---------p~~iv-vG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~- 222 (446)
T 4a7p_A 155 VSNPEFLREGAAIEDFKR---------PDRVV-VGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAF- 222 (446)
T ss_dssp EECCCCCCTTSHHHHHHS---------CSCEE-EEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHH-
T ss_pred EeCcccccccchhhhccC---------CCEEE-EeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHH-
Confidence 6677543 222111111 22222 232 24678888999998877531 11111112222223333332
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
...--+++.-+...+.+.|+++++.+..+
T Consensus 223 ~a~~ia~~nE~~~l~~~~GiD~~~v~~~~ 251 (446)
T 4a7p_A 223 LAVKITFINEIADLCEQVGADVQEVSRGI 251 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 22233356667788889999988776643
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-09 Score=107.46 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=117.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH---------------HH----cCceecCCCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---------------RA----AGFTEENGTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A---------------~~----~G~~~~d~~~~~ 171 (417)
|+||+|||+|.||.++|.+|.+. |.|++|+++++. .+..+.. .+ .++.. ..+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~-~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVN-ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 57999999999999999999877 224788766654 3222221 11 23432 457
Q ss_pred HHhhhccCCeEEEeecchh---------------HHHHHHHHHhcCCCCcEEEEeccchhh-------hhhccccCCCCC
Q 014863 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKN 229 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a---------------~~~Vl~eI~p~Lk~GaiL~~a~G~~i~-------~~~~~~i~~~~d 229 (417)
+++++++||+||+|+|... ..++.++|.+++++|++|++.+.+... .+.+ .....
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~---~~~~~ 152 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA---NTKPN 152 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH---TCCTT
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH---hCCCC
Confidence 8889999999999998544 346777899999999988876543211 1222 11122
Q ss_pred Cc-EEEeccCC--chhhHHHHHhhcccccCCCceEEEee-cCCCCHHHHHHHHHHHHHh-CCCcccccchhhhhhhhccc
Q 014863 230 IG-VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAV-HQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFG 304 (417)
Q Consensus 230 i~-VI~v~Pn~--pg~~vr~ly~~G~e~~G~Gv~~liav-~qd~sgea~e~a~al~~ai-G~~~~iett~~~E~~~dlfg 304 (417)
++ .|...|.. |+..+.+++.- -..++.- ....+.+..+.+..++..+ |...++.+.. ..-+..-+.
T Consensus 153 ~d~~V~~~Pe~~~~G~~~~d~~~~--------~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~ae~~Kl~ 223 (467)
T 2q3e_A 153 LNLQVLSNPEFLAEGTAIKDLKNP--------DRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT-WSSELSKLA 223 (467)
T ss_dssp CEEEEEECCCCCCTTSHHHHHHSC--------SCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECH-HHHHHHHHH
T ss_pred CCeEEEeCHHHhhcccchhhccCC--------CEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCH-HHHHHHHHH
Confidence 33 34566643 44443333321 1122221 1113567889999999998 5332222211 111111222
Q ss_pred ccccccchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 305 ERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 305 eqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
+.+. ....-+++.-+...+.+.|+++++....
T Consensus 224 ~N~~-~a~~ia~~nE~~~l~~~~Gid~~~v~~~ 255 (467)
T 2q3e_A 224 ANAF-LAQRISSINSISALCEATGADVEEVATA 255 (467)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 2221 1222335555666777888888766553
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=105.10 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=74.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecC----------CCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d----------~~~~~~~Eav~~AD 180 (417)
+||+|||+|.||..+|..|.+. |++|.+.+|..+ ..+...+. |....+ ....+.+++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQ-RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 7999999999999999999998 999877666533 34444443 331100 01457888899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+||+++|+..+.++++++.++++++++|++..|+
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999999999999999999987777773
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8e-10 Score=109.99 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=79.7
Q ss_pred hhhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 91 EYIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 91 e~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
...+|+|+|.... ....+.| ++|||||+|+||.++|+.++.. |++|+++++...+. +.+ ++.. .
T Consensus 126 ~~~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~~----~ 190 (333)
T 1j4a_A 126 DEKVARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGYY----V 190 (333)
T ss_dssp HHHHHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTCB----C
T ss_pred HHHHHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCee----c
Confidence 3456778774322 2367999 9999999999999999999988 99988776654332 222 3332 3
Q ss_pred CCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+.++++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 191 ~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~a 235 (333)
T 1j4a_A 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235 (333)
T ss_dssp SCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred CCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECC
Confidence 3789999999999999997654 4556 45778899999988664
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-10 Score=114.42 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=97.6
Q ss_pred hhhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 91 EYIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 91 e~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
...+|+|+|.... ....+.| |||||||+|+||..+|+.++.. |++|+++++..... ..++.. +
T Consensus 125 ~~~~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~-----~~~~~~----~ 188 (404)
T 1sc6_A 125 NAKAHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP-----LGNATQ----V 188 (404)
T ss_dssp HHHHHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-----CTTCEE----C
T ss_pred HHHHHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc-----cCCcee----c
Confidence 3456788886432 2368999 9999999999999999999988 99987776643321 112332 4
Q ss_pred CCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cc--h----hhhhhccccCCCCCCcEEEeccCCc
Q 014863 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GF--L----LGHLQSMGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~-G~--~----i~~~~~~~i~~~~di~VI~v~Pn~p 240 (417)
.+++|++++||+|++++|.... ..++ ++.+..||+|++|+.++ |- . ...+++..+ -...+||...+|..+
T Consensus 189 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i-~gA~lDVf~~EP~~~ 267 (404)
T 1sc6_A 189 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL-AGAAIDVFPTEPATN 267 (404)
T ss_dssp SCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE-EEEEEEC--------
T ss_pred CCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCc-cEEEEeecCCCCCCc
Confidence 5899999999999999998754 4566 46788999999998665 32 1 122222111 112457787888542
Q ss_pred hhh-HHHHHhhcccccCCCceEEEeecCC-CCHHHHH
Q 014863 241 GPS-VRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (417)
Q Consensus 241 g~~-vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e 275 (417)
... ...++. --+.+++||-. .|.++.+
T Consensus 268 ~~~~~~pL~~--------~~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 268 SDPFTSPLAE--------FDNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp -CTTTGGGTT--------CTTEEEECCCSCCSHHHHH
T ss_pred cccccchhhc--------CCCEEECCCCCCCcHHHHH
Confidence 210 001121 24778999874 3445443
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-10 Score=112.14 Aligned_cols=104 Identities=19% Similarity=0.120 Sum_probs=78.3
Q ss_pred hhc-cCcccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 93 IVR-GGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~~~-~g~~~f--~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
.+| +|+|.. ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ ..+.+.. .
T Consensus 128 ~~~~~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~~-----~ 191 (343)
T 2yq5_A 128 RMDHDHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFLT-----Y 191 (343)
T ss_dssp HHHHHCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTCE-----E
T ss_pred HHHHcCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcccc-----c
Confidence 345 565433 223478999 9999999999999999999988 9998877765432 1223443 3
Q ss_pred CCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+.+|++++||+|++++|.... ..++ .+.+..||+|++|+.++
T Consensus 192 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 236 (343)
T 2yq5_A 192 TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCA 236 (343)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECC
Confidence 4899999999999999996544 3455 46788899999999775
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.9e-09 Score=105.93 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=113.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH------------------cCceecCCCcCCHH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------------------AGFTEENGTLGDIY 173 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~------------------~G~~~~d~~~~~~~ 173 (417)
|||+|||+|.||.++|..|. . |++|+++++. +...+...+ .++.. ..+++
T Consensus 37 mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~----ttd~~ 104 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIV-QAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA----TTDKH 104 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE----ESCHH
T ss_pred CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecC-HHHhhHHhccCCccccccHHHHHhhccCCeEE----EcCHH
Confidence 89999999999999999886 4 7888766654 333333322 12332 46788
Q ss_pred hhhccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCC
Q 014863 174 ETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKG 239 (417)
Q Consensus 174 Eav~~ADiViLavpd~-----------a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~ 239 (417)
+++++||+||+++|.. ...++++.|.+ +++|++|++.+.+... .+.+ .+.+ ..+...|-.
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~---~l~~--~~v~~sPe~ 178 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKE---RLGI--DNVIFSPEF 178 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHH---HHTC--CCEEECCCC
T ss_pred HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHH---HHhh--ccEeecCcc
Confidence 9999999999999975 35678888999 9999999887765422 2221 1222 234457732
Q ss_pred --chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH--hCCC-cccccchhhhhhhhcccccccccchHH
Q 014863 240 --MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSP-FTFATTLEQEYRSDIFGERGILLGAVH 314 (417)
Q Consensus 240 --pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~a--iG~~-~~iett~~~E~~~dlfgeqtvL~G~~~ 314 (417)
|+....+... .+. |.+.. +.+..+.+..++.. ++.. .++.+.. .+-+.--+-+.+ +...--
T Consensus 179 ~~~G~A~~~~l~---------p~r-IvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~-~~AE~~Kl~~N~-~~a~~I 244 (432)
T 3pid_A 179 LREGRALYDNLH---------PSR-IVIGE--RSARAERFADLLKEGAIKQDIPTLFTDS-TEAEAIKLFANT-YLALRV 244 (432)
T ss_dssp CCTTSHHHHHHS---------CSC-EEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCH-HHHHHHHHHHHH-HHHHHH
T ss_pred CCcchhhhcccC---------Cce-EEecC--CHHHHHHHHHHHHhhhccCCCeEEecCc-cHHHHHHHHHHH-HHHHHH
Confidence 3333322211 112 22333 23455666777765 4432 1222221 111222222332 222233
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 315 GIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 315 a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
+++.-+...+.+.|++.++.+..+
T Consensus 245 a~~nEl~~lae~~GiD~~~v~~~~ 268 (432)
T 3pid_A 245 AYFNELDSYAESQGLNSKQIIEGV 268 (432)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 355556777788888887766643
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=112.58 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=101.6
Q ss_pred hhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 92 YIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
..+|+|+|.... ....+.| ++|||||+|+||.++|+.++.. |++|+++++..... ..+... ..
T Consensus 137 ~~~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~~----~~ 200 (416)
T 3k5p_A 137 VSAHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVKP----AA 200 (416)
T ss_dssp HHHHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBEE----CS
T ss_pred HhhhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcEe----cC
Confidence 346788996543 2468999 9999999999999999999988 99987776542211 123332 56
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCch
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg 241 (417)
+.+|++++||+|++++|..... .++ ++.+..||+|++|+.++ |-. ...+++..+ -...+||.-..|..+.
T Consensus 201 sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i-~gAalDVf~~EP~~~~ 279 (416)
T 3k5p_A 201 SLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHL-AGAAIDVFPVEPASNG 279 (416)
T ss_dssp SHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE-EEEEECCCSSCCSSTT
T ss_pred CHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCc-cEEEeCCCCCCCCCcc
Confidence 8999999999999999986654 455 46788999999998664 321 122332111 1234555556664432
Q ss_pred hhH-HHHHhhcccccCCCceEEEeecC-CCCHHHHHH
Q 014863 242 PSV-RRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (417)
Q Consensus 242 ~~v-r~ly~~G~e~~G~Gv~~liav~q-d~sgea~e~ 276 (417)
... ..++ .--+.+++||- ..|.++.+.
T Consensus 280 ~~~~~pL~--------~~~nvilTPHig~~T~ea~~~ 308 (416)
T 3k5p_A 280 ERFSTPLQ--------GLENVILTPHIGGSTEEAQER 308 (416)
T ss_dssp SCCCCTTT--------TCTTEEECCSCTTCCHHHHHH
T ss_pred cccchhHh--------cCCCEEECCCCCCCCHHHHHH
Confidence 100 0011 11367899994 456665543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=109.13 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=80.1
Q ss_pred hhhhccCcccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 91 EYIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 91 e~~~~~g~~~f--~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
...+|+|+|.. ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+. + +.++.
T Consensus 125 ~~~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~----- 188 (331)
T 1xdw_A 125 TSRTAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYCT----- 188 (331)
T ss_dssp HHHHTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTCE-----
T ss_pred HHHHHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhccc-----
Confidence 34567788753 122367999 9999999999999999999988 99988777654332 1 12333
Q ss_pred cCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
..+.++++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 189 ~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 189 QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECS
T ss_pred cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECC
Confidence 35889999999999999997644 3556 46788899999988665
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=109.33 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=80.0
Q ss_pred hhhhccCcccc--cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 91 EYIVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 91 e~~~~~g~~~f--~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
...+|+|+|.. ......+.| ++|||||+|.||.++|+.++.. |++|+++++...+. + +.++.
T Consensus 124 ~~~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~----- 187 (333)
T 1dxy_A 124 QAQLQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDFD----- 187 (333)
T ss_dssp HHHHHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTCE-----
T ss_pred HHHHHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhccc-----
Confidence 34567788743 222368999 9999999999999999999988 99988776654332 1 12233
Q ss_pred cCCHHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
..+.+|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 188 ~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~s 233 (333)
T 1dxy_A 188 YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233 (333)
T ss_dssp ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECC
Confidence 34889999999999999997664 4566 46788899999988664
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-08 Score=96.66 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=113.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH-----------HHHHcCceecC----------CCcC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN----------GTLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~d----------~~~~ 170 (417)
.||+|||.|.||..+|..+..+ |++|++.+... +..+ ...+.|..... ..+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~-~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~ 79 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEP-RQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCH-HHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc
Confidence 7999999999999999999999 99998876542 2222 22223322100 0145
Q ss_pred CHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
+++|++++||+|+=++|-... .+++.+|-++++++++|. -++++.+..+.+ .....-+|+..||--|.+.+
T Consensus 80 ~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~m--- 153 (319)
T 3ado_A 80 NLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYYI--- 153 (319)
T ss_dssp CHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTTC---
T ss_pred chHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCcccc---
Confidence 788999999999999996555 369999999999999875 667888887765 22233489999998888873
Q ss_pred HhhcccccCCCceE-EEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINS-SFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~-liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+. =|.++...+.+..+.+.++...+|..
T Consensus 154 ------------~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~ 182 (319)
T 3ado_A 154 ------------PLVELVPHPETSPATVDRTHALMRKIGQS 182 (319)
T ss_dssp ------------CEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred ------------chHHhcCCCCCcHHHHHHHHHHHHHhCCc
Confidence 32 13458889999999999999999964
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.5e-08 Score=98.23 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=66.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec------------C--CCcCCHHhhhc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------N--GTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~------------d--~~~~~~~Eav~ 177 (417)
|||+|||+|.||.++|.+|.+ |++|++.++. .+..+...+.|.... . ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDIL-PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECC-HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999853 6787766554 333444444343100 0 01346778899
Q ss_pred cCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~-----------a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++|+||+++|+. ...+++++|.+ +++|++|++.
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ 116 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIK 116 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEEC
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEe
Confidence 999999999987 46788889999 9999988873
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-09 Score=104.49 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred CCEEEEEcccchHHHHHHHHHh-hhhhhcCCceEEEEe---cCCchhHHHH-HHcCceec----CC-----------CcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGL---RKGSRSFAEA-RAAGFTEE----NG-----------TLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~Vivg~---r~~~~s~~~A-~~~G~~~~----d~-----------~~~ 170 (417)
||||+|||.|+||.++|..|.. . |++|.++. +. .+..+.+ .+.|.... ++ ...
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 74 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADE-AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITK 74 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTH-HHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEES
T ss_pred CceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCc-HHHHHHHHhhccceeeeecCCCccceeeccceEEeC
Confidence 3799999999999999999976 7 88888776 32 3334442 23331100 00 235
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++++++++|+||++||+....+++++|.|+++++++|+..
T Consensus 75 ~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 75 DPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp CHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred CHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 67888999999999999999999999999999999887763
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=98.41 Aligned_cols=111 Identities=21% Similarity=0.147 Sum_probs=79.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC------cCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT------LGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~------~~~~~Eav~~ADiViLa 185 (417)
|||+|||.|+||.++|..|. + |.+|.+..|.. ...+...+.|+...... .....+++..+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQ-EQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCH-HHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 99988877653 33445555687642000 00013467789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccchhh-hhhccccCCCCCCcEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~-~~~~~~i~~~~di~VI~v 235 (417)
||+++..++++++.+. .++++|++..|+... .+.+ .+|.+ +++..
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~g 120 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYVG 120 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEEE
Confidence 9999999999999875 566666788999864 4544 44443 44433
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=99.52 Aligned_cols=202 Identities=19% Similarity=0.169 Sum_probs=119.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCch---hHHHHHH---------------------cCceec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AGFTEE 165 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~---s~~~A~~---------------------~G~~~~ 165 (417)
++||+|||+|.||.++|.+|.+. .|+ +|+++++...+ ..+...+ .|-..
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~- 91 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE- 91 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE-
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE-
Confidence 48999999999999999999765 268 88877665440 2222211 22111
Q ss_pred CCCcCCHHhhhccCCeEEEeecchh------------HHHHHHHHHhcCCCCcEEEEeccchhhh--------h-hcccc
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGH--------L-QSMGL 224 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a------------~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~--------~-~~~~i 224 (417)
...+ .+++++||+||+++|... ...+.+.|.+++++|++|++.+++.... + +..+.
T Consensus 92 --~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~ 168 (478)
T 3g79_A 92 --CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGL 168 (478)
T ss_dssp --EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCC
T ss_pred --EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCC
Confidence 0234 788999999999998653 3456678999999999998877653211 1 11121
Q ss_pred CCCCCCcEEEeccC--CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCcccccchhhhhhhh
Q 014863 225 DFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSD 301 (417)
Q Consensus 225 ~~~~di~VI~v~Pn--~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~ai-G~~~~iett~~~E~~~d 301 (417)
....++ .+.-.|. .||..+.+... .+.++ ... +.+..+.+..++..+ +...+..++. ..-+.-
T Consensus 169 ~~~~d~-~v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~aE~~ 234 (478)
T 3g79_A 169 KAGEDF-ALAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMSA-TAAEVT 234 (478)
T ss_dssp CBTTTB-EEEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEEH-HHHHHH
T ss_pred CcCCce-eEEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCCH-HHHHHH
Confidence 111222 4667774 34544332222 22333 232 467779999999999 6542222221 222222
Q ss_pred cccccccccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 302 IFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 302 lfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
-+-+++ +.+.--+++.-+...+.+.|++.++.+.
T Consensus 235 Kl~~N~-~~a~~Ia~~nE~~~l~e~~GiD~~~v~~ 268 (478)
T 3g79_A 235 KTAENT-FRDLQIAAINQLALYCEAMGINVYDVRT 268 (478)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222332 2223333566677788889999887766
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-08 Score=104.62 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-------C-------------ceecCCCc
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------G-------------FTEENGTL 169 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G-------------~~~~d~~~ 169 (417)
|-+||+|||+|.||.++|..|.+. |++|+++++. .+..+...+. | +.. .
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~-~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~----t 75 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVD-QAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF----S 75 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----E
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE----E
Confidence 448999999999999999999999 9998766654 3334444332 1 121 3
Q ss_pred CCHHhhhccCCeEEEeecc----------hhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 170 GDIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd----------~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.++++++++||+||+|||. ....+++++|.+++++|++|++.+++
T Consensus 76 td~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv 130 (478)
T 2y0c_A 76 TDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV 130 (478)
T ss_dssp CCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred CCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 5677889999999999997 77788999999999999998877765
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=88.20 Aligned_cols=114 Identities=7% Similarity=-0.043 Sum_probs=80.2
Q ss_pred ccCCCCEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
.++- ++|+|||. |+||..++++|++. |++|+..+....+ -.|... ..+++|+.+..|++
T Consensus 11 l~~p-~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDlv 73 (138)
T 1y81_A 11 SKEF-RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVI 73 (138)
T ss_dssp ---C-CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEE
T ss_pred ccCC-CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCEE
Confidence 3444 89999999 99999999999999 9985544433211 157764 56889988899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
++++|+..+.++++++.. ...+.++.+.+++.-...+. .-..++++ +.||+++-.
T Consensus 74 ii~vp~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~--igpnc~g~~ 128 (138)
T 1y81_A 74 VFVVPPKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEY--SFGRCIMVE 128 (138)
T ss_dssp EECSCHHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEE--ECSCCHHHH
T ss_pred EEEeCHHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEE--EcCCcceEE
Confidence 999999999999988766 45566777777664222111 10124454 569998876
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.1e-09 Score=106.41 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=92.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++.. .. ...|.. ..+.+|++++||+|+++
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~----~~-~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPR----QA-REPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH----HH-HSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCCh----hh-hccCcc-----cCCHHHHHHhCCEEEEe
Confidence 46889 9999999999999999999988 99987665431 11 123433 46899999999999999
Q ss_pred ecchhH-----HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 186 ISDAAQ-----ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~a~-----~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|.... ..++ +++.+.||+|++|+.++ |-. +..+++.. .....+||.-..|....+ ++.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~-i~~A~LDV~~~EP~~~~~----l~~--- 246 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA-DLEVALDVWEGEPQADPE----LAA--- 246 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTC-CEEEEESCCTTTTSCCHH----HHT---
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCC-CceEEeeeeccCCCCchh----hcc---
Confidence 997764 4556 46888999999988664 321 11222211 112345666667743222 231
Q ss_pred cccCCCceEEEeecC-CCCHHHH
Q 014863 253 EINGAGINSSFAVHQ-DVDGRAT 274 (417)
Q Consensus 253 e~~G~Gv~~liav~q-d~sgea~ 274 (417)
.+.+++||- ..|.++.
T Consensus 247 ------~nvi~TPHiag~t~e~~ 263 (380)
T 2o4c_A 247 ------RCLIATPHIAGYSLEGK 263 (380)
T ss_dssp ------TCSEECSSCTTCCHHHH
T ss_pred ------CCEEEccccCcCCHHHH
Confidence 355788986 3454543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=95.55 Aligned_cols=202 Identities=11% Similarity=0.105 Sum_probs=118.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-------------
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET------------- 175 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea------------- 175 (417)
.| .|+.|||+|.||.++|.+|.+. |++|+++++. .+..+... .|..+.. ....+|+
T Consensus 10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~-~~kv~~L~-~g~~pi~--epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDIN-QQTIDKLQ-NGQISIE--EPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHH-TTCCSSC--CTTHHHHHHHHHHTTCEEEE
T ss_pred cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHH-CCCCCcC--CCCHHHHHHhhcccCceEEe
Confidence 46 8999999999999999999999 9998776665 33333332 2321100 0011111
Q ss_pred --hccCCeEEEeecchh------------HHHHHHHHHhcCCCCcEEEEeccchhh---hh-----hccccCCCCCCcEE
Q 014863 176 --ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLG---HL-----QSMGLDFPKNIGVI 233 (417)
Q Consensus 176 --v~~ADiViLavpd~a------------~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~-----~~~~i~~~~di~VI 233 (417)
+++||+||+|||... ...+.+.|.++|++|++|++.+++... .+ ++.+.....++ .+
T Consensus 79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~-~v 157 (431)
T 3ojo_A 79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDI-YL 157 (431)
T ss_dssp SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTE-EE
T ss_pred CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCe-EE
Confidence 458999999999665 345667899999999998888766421 11 11111111222 45
Q ss_pred Eecc--CCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccc
Q 014863 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311 (417)
Q Consensus 234 ~v~P--n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G 311 (417)
...| -.||....+... .+.++ ... +.++.+.+..++..++...++.++. ..-+.--+-+++. .+
T Consensus 158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~AE~~Kl~~N~~-~a 223 (431)
T 3ojo_A 158 VHCPERVLPGKILEELVH---------NNRII-GGV--TKACIEAGKRVYRTFVQGEMIETDA-RTAEMSKLMENTY-RD 223 (431)
T ss_dssp EECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHTTTCCSCEEEEEH-HHHHHHHHHHHHH-HH
T ss_pred EECCCcCCCcchhhcccC---------CCEEE-EeC--CHHHHHHHHHHHHHHhCCcEEeCCH-HHHHHHHHHHHHH-HH
Confidence 6677 334444332221 23433 233 5788999999999998643332322 2222222223332 22
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 312 AVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 312 ~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
.--+++.-+...+.+.|++.++...
T Consensus 224 ~~Ia~~nE~~~l~e~~GiD~~~v~~ 248 (431)
T 3ojo_A 224 VNIALANELTKICNNLNINVLDVIE 248 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2333566677778888888877665
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-09 Score=99.53 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=72.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.++| ++|+|||+|.||.+++.+|.+. |.+|.+.+|+.++..+.+.+.|+.. ..+..++++++|+||++|
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 4678 9999999999999999999998 8888888776444444554556553 347788899999999999
Q ss_pred cchhHHHHHHHH-HhcCCCCcEEEEecc
Q 014863 187 SDAAQADNYEKI-FSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~a~~~Vl~eI-~p~Lk~GaiL~~a~G 213 (417)
|+....++...+ .+.+++|++|+++..
T Consensus 195 p~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 988654221112 356788988886654
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.1e-09 Score=105.01 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=98.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++. .+. ...+.. ..+.+|++++||+|+++
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~----~~~-~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPP----RAA-RGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHH----HHH-TTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCC----hHH-hccCcc-----cCCHHHHHhhCCEEEEc
Confidence 46788 9999999999999999999988 9998776542 111 112322 56899999999999999
Q ss_pred ecchhH-----HHHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 186 ISDAAQ-----ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~a~-----~~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|.... ..++ .+.+..||+|++|+.++ |-. +..+++.. .....+||.--.|.-+. .++..
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~-i~gA~LDV~e~EP~~~~----~L~~~-- 250 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ-PLSVVLDVWEGEPDLNV----ALLEA-- 250 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTC-CEEEEESCCTTTTSCCH----HHHHH--
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC-CeEEEeeccccCCCCcc----hhhhC--
Confidence 996654 3455 46778899999999775 321 22233211 11235567666774332 24432
Q ss_pred cccCCCceEEEeecC-CCCHHHHHH-----HHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~q-d~sgea~e~-----a~al~~aiG~~ 287 (417)
+.+++||- ..|.++.+. +..+..-++..
T Consensus 251 -------~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~ 284 (381)
T 3oet_A 251 -------VDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284 (381)
T ss_dssp -------SSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -------CEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 34688886 345455443 34555566653
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-08 Score=98.13 Aligned_cols=105 Identities=19% Similarity=0.110 Sum_probs=78.8
Q ss_pred hhccCcccccc--cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 93 IVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 93 ~~~~g~~~f~~--~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
.+++|+|.... ....+.| ++|||||+|.+|..+|+.++.. |++|+++++... +...+.|+. ..
T Consensus 122 ~~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~-----~~ 186 (334)
T 3kb6_A 122 RVKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV-----YT 186 (334)
T ss_dssp HHHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE-----EC
T ss_pred cccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce-----ec
Confidence 34556553322 2478899 9999999999999999999888 999876655422 233455666 46
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
+.+|++++||+|++++|-.... .++. +.+..||+|++|+-++
T Consensus 187 ~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~a 230 (334)
T 3kb6_A 187 SLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTA 230 (334)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred CHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecC
Confidence 8999999999999999966553 4564 5778899999988553
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-08 Score=93.89 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=71.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.||.++|+.|+.. |.+|+++++... ..+.+.+.|+... ...+.+++++++|+|+++
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESD-LLARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 46789 9999999999999999999988 998888777533 3344456676520 024678889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+..+.+ +....|++|.+|++++
T Consensus 221 ~p~~~i~~---~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPALVVTA---NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSCCBCH---HHHHHSCTTCEEEECS
T ss_pred CChHHhCH---HHHHhcCCCCEEEEec
Confidence 99854322 3456789999988775
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-07 Score=92.40 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--------eEEEEecCCc---hhHHHHHH-c--------CceecC--CCc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEARA-A--------GFTEEN--GTL 169 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--------~Vivg~r~~~---~s~~~A~~-~--------G~~~~d--~~~ 169 (417)
.||+|||.|+.|.++|.-|.++ |+ +|.+|.|..+ +....... . |+...+ ...
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999887 53 4777766532 11111111 1 111100 014
Q ss_pred CCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccc
Q 014863 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~ 214 (417)
.|+++++++||+|++++|.+...++++++.++++++..|+ .+-|+
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 5789999999999999999999999999999999988654 55576
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-08 Score=93.23 Aligned_cols=94 Identities=21% Similarity=0.344 Sum_probs=71.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.||.++++.|+.. |.+|+++++... ..+.+.+.|+... ...+.+++++++|+|+++
T Consensus 153 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 153 YTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSA-HLARITEMGLVPF--HTDELKEHVKDIDICINT 222 (300)
T ss_dssp SCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTCEEE--EGGGHHHHSTTCSEEEEC
T ss_pred CCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHCCCeEE--chhhHHHHhhCCCEEEEC
Confidence 57889 9999999999999999999988 999888777633 3344445676420 024678899999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+..+. ++....|++|.+|++++
T Consensus 223 ~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 223 IPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CChhhhC---HHHHHhCCCCCEEEEEe
Confidence 9985332 24567899999988665
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-07 Score=76.92 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCCHH----hhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIY----ETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~----Eav~~ADiViLav 186 (417)
|+|+|||+|.+|..+++.|.+. |++|++.++.... .+... ..|+....+...+.+ ..++++|+|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDI-CKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7999999999999999999998 9988877765333 33333 346532111122222 2267899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|+......+..+.+.++++.+|..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9886665555666667777777655543
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-08 Score=85.92 Aligned_cols=111 Identities=11% Similarity=0.004 Sum_probs=78.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||. |+||..++++|++. |++|+..+.... +. -.|... ..+++|+....|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence 88999999 89999999999999 988655444320 11 147764 567888888999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
|+....++++++.. ...+.+|++.+.+.-...+. .-..++++ +.||+++-.
T Consensus 79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~Gi~~--igpnc~g~~ 129 (145)
T 2duw_A 79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAGLSV--VMDRCPAIE 129 (145)
T ss_dssp CSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTTCEE--ECSCCHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcCCEE--EcCCeeeEE
Confidence 99999999988766 44555666665553221111 11234444 569998876
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-08 Score=104.04 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=73.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.||.++|+.++.. |.+|++.++. ......+...|+. +.++++++++||+|+++
T Consensus 253 ~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~-~~~~~~a~~~g~~-----~~~l~ell~~aDiVi~~ 319 (479)
T 1v8b_A 253 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDKGDFFITC 319 (479)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred cccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCC-hhhHHHHHHcCCE-----ecCHHHHHhcCCEEEEC
Confidence 46899 9999999999999999999998 9998776655 3323355667886 46899999999999999
Q ss_pred ecchhHHHHH-HHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+.. ..++ .+.+..||+|++|+.++-+.
T Consensus 320 ~~t---~~lI~~~~l~~MK~gailiNvgrg~ 347 (479)
T 1v8b_A 320 TGN---VDVIKLEHLLKMKNNAVVGNIGHFD 347 (479)
T ss_dssp CSS---SSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCh---hhhcCHHHHhhcCCCcEEEEeCCCC
Confidence 732 2334 36778899999999775443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-08 Score=104.23 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=72.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.||.++|+.|+.. |.+|+++++... ....+...|+. ..++++++++||+|+++
T Consensus 273 ~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~~-~~~~a~~~G~~-----~~~l~ell~~aDiVi~~ 339 (494)
T 3d64_A 273 VMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDPI-CALQAAMEGYR-----VVTMEYAADKADIFVTA 339 (494)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCHH-HHHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred cccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCChH-hHHHHHHcCCE-----eCCHHHHHhcCCEEEEC
Confidence 56899 9999999999999999999988 999887766532 23345566876 45899999999999999
Q ss_pred ecchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.. ..++ .+.+..||+|++|+.++-.
T Consensus 340 ~~t---~~lI~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 340 TGN---YHVINHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp SSS---SCSBCHHHHHHCCTTEEEEECSSS
T ss_pred CCc---ccccCHHHHhhCCCCcEEEEcCCC
Confidence 832 2334 3677889999999966543
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-09 Score=102.34 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=71.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~a 190 (417)
|||+|||.|+||.++|..|.++ |++|.++.|.... .+.....|... .....+..+.+ +.+|+||++||+.+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPA-QDIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCC-EEEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeec-cceecCchHhcCCCCCEEEEeCCccC
Confidence 7999999999999999999999 8888888776332 11112234211 00012344554 88999999999999
Q ss_pred HHHHHHHHHhcCCCCcE-EEEeccchhh
Q 014863 191 QADNYEKIFSCMKPNSI-LGLSHGFLLG 217 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~ 217 (417)
..++++++.|+++++++ |++..|+...
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~~ 102 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQL 102 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCCG
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCcccH
Confidence 99999999999988875 4577888643
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-08 Score=86.05 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
| ++|+|||+|.||.++++.|+.. |++|.+++|...+..+.+.+.|.... ...+..++++++|+|+.++|..
T Consensus 21 ~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 G-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp C-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCCS
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCCC
Confidence 7 9999999999999999999888 88887777775555556777775421 1457889999999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEEec
Q 014863 190 AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.. ++. ...+++|.++++.+
T Consensus 92 ~~--~~~--~~~l~~g~~vid~~ 110 (144)
T 3oj0_A 92 TP--IVE--ERSLMPGKLFIDLG 110 (144)
T ss_dssp SC--SBC--GGGCCTTCEEEECC
T ss_pred Cc--Eee--HHHcCCCCEEEEcc
Confidence 22 111 25578888877553
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-08 Score=94.30 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=67.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC--ceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G--~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
++|+|||+|.||.+++++|.+. .|+ +|.+++|..++..+.+.+.+ +.. +.+.+++++++|+|+++||.
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~atp~ 206 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITVTLA 206 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEECCCC
T ss_pred cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEEeCC
Confidence 8999999999999999999764 155 78787776555555555556 553 56899999999999999995
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
. ..++.. +.+++|++|++++.+
T Consensus 207 ~--~~v~~~--~~l~~g~~vi~~g~~ 228 (312)
T 2i99_A 207 T--EPILFG--EWVKPGAHINAVGAS 228 (312)
T ss_dssp S--SCCBCG--GGSCTTCEEEECCCC
T ss_pred C--CcccCH--HHcCCCcEEEeCCCC
Confidence 2 233322 578899988876554
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-06 Score=92.51 Aligned_cols=212 Identities=12% Similarity=0.106 Sum_probs=136.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceec-CC-----CcCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-NG-----TLGD 171 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-d~-----~~~~ 171 (417)
+.|+||+|||.|.||..+|..+... |++|++.+.. .+..+.+.+ .+.... .. ...+
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred ccccEEEEEcccHHHHHHHHHHHhC------CCchhcccch-HhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence 3468999999999999999999999 9999877654 322222221 110000 00 0122
Q ss_pred HHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
..+.+++||+||=++|-.... +++.++-++++++++|. -++++.+..+.. .....-+|+..|+--|.+.++
T Consensus 387 ~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m~--- 460 (742)
T 3zwc_A 387 STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVMR--- 460 (742)
T ss_dssp CGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTCC---
T ss_pred cHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCCc---
Confidence 335688999999999965553 69999999999999875 667888887765 222234899999988877731
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--HHHHHHHHHHH
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRRFTE 326 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a--~iea~~~~~v~ 326 (417)
.-= |.++...+.+.++.+.++...+|...++ . . | ..+-+..-+.. +.|++ .+++
T Consensus 461 ----------LVE-vi~g~~Ts~e~~~~~~~~~~~lgK~pV~-v---k----d---~pGFi~NRi~~~~~~ea~--~l~~ 516 (742)
T 3zwc_A 461 ----------LLE-VIPSRYSSPTTIATVMSLSKKIGKIGVV-V---G----N---CYGFVGNRMLAPYYNQGF--FLLE 516 (742)
T ss_dssp ----------EEE-EEECSSCCHHHHHHHHHHHHHTTCEEEE-C---C----C---STTTTHHHHHHHHHHHHH--HHHH
T ss_pred ----------eEE-EecCCCCCHHHHHHHHHHHHHhCCCCcc-c---C----C---CCCccHHHHhhHHHHHHH--HHHH
Confidence 111 3458889999999999999999965222 1 1 1 11223333222 33333 4667
Q ss_pred cCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHH
Q 014863 327 NGMNEDLAYKNTVECIT--GIISKIISTQGMLAV 358 (417)
Q Consensus 327 ~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~l 358 (417)
.|.++++--.... .+- -|--.|+-.-|++.+
T Consensus 517 eG~~~~~id~a~~-~~G~pmGPf~l~D~vGlDv~ 549 (742)
T 3zwc_A 517 EGSKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVG 549 (742)
T ss_dssp TTCCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHH
T ss_pred cCCCHHHHHHHHH-HcCCCCChHHHHHHhCHHHH
Confidence 7888877655332 110 145566666677543
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=97.27 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=72.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. ......+...|+. ..+++|++++||+|+++
T Consensus 207 ~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~-p~~a~~A~~~G~~-----~~sL~eal~~ADVVilt 273 (436)
T 3h9u_A 207 VMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVD-PINALQAAMEGYQ-----VLLVEDVVEEAHIFVTT 273 (436)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred CcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-hhhhHHHHHhCCe-----ecCHHHHHhhCCEEEEC
Confidence 56889 9999999999999999999998 9998776554 4444556678887 46899999999999986
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEecc
Q 014863 186 ISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G 213 (417)
+.... ++. +.+..||+|++|+.++-
T Consensus 274 ~gt~~---iI~~e~l~~MK~gAIVINvgR 299 (436)
T 3h9u_A 274 TGNDD---IITSEHFPRMRDDAIVCNIGH 299 (436)
T ss_dssp SSCSC---SBCTTTGGGCCTTEEEEECSS
T ss_pred CCCcC---ccCHHHHhhcCCCcEEEEeCC
Confidence 65332 233 56788999999886653
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.8e-08 Score=91.56 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=68.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.++| +|+|||+|.||.+++++|.+. |.+|.+.+|+.++..+.+.+.|.. ..+.+++ +++|+|++++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 3566 899999999999999999998 888888877655445555555654 3467788 9999999999
Q ss_pred cchhHH---HHHHHHHhcCCCCcEEEEec
Q 014863 187 SDAAQA---DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~---~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+..+. .++. .+.+++|++|+++.
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~~ 206 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDLV 206 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEESC
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEee
Confidence 998653 2222 46688898887643
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-06 Score=82.62 Aligned_cols=172 Identities=15% Similarity=0.195 Sum_probs=128.0
Q ss_pred cCceecCCCcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---hhh-hhccccCCCCCCcEEE
Q 014863 160 AGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVIA 234 (417)
Q Consensus 160 ~G~~~~d~~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~-~~~~~i~~~~di~VI~ 234 (417)
.|+.. +.|..|+++++|++|+=+|-.. +.+++++|.++++.|++|+.++-++ +.+ ++. .. ++|+.|..
T Consensus 127 aGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIsS 199 (358)
T 2b0j_A 127 VGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNITS 199 (358)
T ss_dssp GTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEEE
T ss_pred cCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCeec
Confidence 68886 6788899999999999999776 7899999999999999999887664 222 232 23 78999999
Q ss_pred eccCC-chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccch
Q 014863 235 VCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGA 312 (417)
Q Consensus 235 v~Pn~-pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~ 312 (417)
.||-+ ||. .|-.. +. ..-++.++.++...|++..|..- .+.. |+.+..+-.+-.
T Consensus 200 ~HPaaVPgt--------------~Gq~~-~g-~~yAtEEqIeklveLaksa~k~ay~vPA--------dl~SpV~DMgs~ 255 (358)
T 2b0j_A 200 YHPGCVPEM--------------KGQVY-IA-EGYASEEAVNKLYEIGKIARGKAFKMPA--------NLIGPVCDMCSA 255 (358)
T ss_dssp CBCSSCTTT--------------CCCEE-EE-ESSSCHHHHHHHHHHHHHHHSCEEEEEH--------HHHHHHHSTTHH
T ss_pred cCCCCCCCC--------------CCccc-cc-cccCCHHHHHHHHHHHHHhCCCeEecch--------hhccchhhhHHH
Confidence 99933 333 13332 22 55689999999999999999752 2222 444444434444
Q ss_pred HHHH----HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 313 VHGI----VESLFRRF-TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 313 ~~a~----iea~~~~~-v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+.+. +..-++.. .-.|-|.+++-+.+.++|. .++.|+.++|+.+|-+.+.
T Consensus 256 vTAv~~AGiL~Y~~~vtkIlgAP~~mie~q~~esL~-tiasLve~~GI~gm~k~Ln 310 (358)
T 2b0j_A 256 VTATVYAGLLAYRDAVTKILGAPADFAQMMADEALT-QIHNLMKEKGIANMEEALD 310 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHHHHHHHHCGGGHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 4443 33334344 4679999999999999998 9999999999999988876
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.7e-07 Score=87.73 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=64.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC--ceEEEEecCCchhHHHHHHcC---------ceecCCCcCCHHhhhccC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G--~~Vivg~r~~~~s~~~A~~~G---------~~~~d~~~~~~~Eav~~A 179 (417)
|+||+|||.|+||.++|..|... | .+|++.++...+....+.+.+ +.. ...+. +++++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 58999999999999999999998 8 578777665433333332211 121 02455 788999
Q ss_pred CeEEEeecchhH--------------------HHHHHHHHhcCCCCcE-EEEeccch
Q 014863 180 DLVLLLISDAAQ--------------------ADNYEKIFSCMKPNSI-LGLSHGFL 215 (417)
Q Consensus 180 DiViLavpd~a~--------------------~~Vl~eI~p~Lk~Gai-L~~a~G~~ 215 (417)
|+||+++|+... .++++++.++. ++.+ |.++-+..
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVD 126 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHH
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHH
Confidence 999999997653 46666777765 4544 44555554
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.42 E-value=7e-07 Score=92.55 Aligned_cols=123 Identities=24% Similarity=0.224 Sum_probs=86.1
Q ss_pred cccchhhHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh
Q 014863 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (417)
Q Consensus 74 ~~~~~~~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s 153 (417)
-|-.+-+.+.-+.-|..|..+.+=. .. ....+.| ++|+|||+|.+|..+|+.++.. |.+|++.++. ...
T Consensus 214 Vnds~tK~~fDn~yG~~eslvdgI~--Ra-tg~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~d-p~~ 282 (464)
T 3n58_A 214 VNDSVTKSKFDNKYGCKESLVDGIR--RG-TDVMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVD-PIC 282 (464)
T ss_dssp CTTSHHHHTTHHHHHHHHHHHHHHH--HH-HCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHH
T ss_pred eccHhhhhhhhhhhcchHHHHHHHH--Hh-cCCcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-cch
Confidence 3455555555555555554443111 11 1246889 9999999999999999999988 9998876654 333
Q ss_pred HHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHH-HHHHhcCCCCcEEEEeccch
Q 014863 154 FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 154 ~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~ 215 (417)
...+...|+. +.+++|++++||+|++++... .++ .+.+..||+|++|+.++-+.
T Consensus 283 a~~A~~~G~~-----vv~LeElL~~ADIVv~atgt~---~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 283 ALQAAMDGFE-----VVTLDDAASTADIVVTTTGNK---DVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp HHHHHHTTCE-----ECCHHHHGGGCSEEEECCSSS---SSBCHHHHHHSCTTEEEEECSSST
T ss_pred hhHHHhcCce-----eccHHHHHhhCCEEEECCCCc---cccCHHHHhcCCCCeEEEEcCCCC
Confidence 4456667887 458999999999999987532 344 36777899999998766544
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=93.85 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=72.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.+|..+|+.|+.. |.+|++.++. ......|...|+. +.+++++++++|+|+++
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d-p~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID-PICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC-hhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 46789 9999999999999999999998 9998776654 3334556678886 46899999999999997
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~ 214 (417)
+- ...++. +.+..||+|.+|+.++-+
T Consensus 283 tg---t~~lI~~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 283 TG---NKNVVTREHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp SS---CSCSBCHHHHHHSCTTEEEEECSST
T ss_pred CC---CcccCCHHHHHhcCCCcEEEEecCC
Confidence 32 223453 667789999998866533
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.1e-07 Score=83.55 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=58.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~ 189 (417)
+||||||+|.||..++++|.+. |++++ ++++. .+. .+ . +.++++++ .++|+|++++|+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~-~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~ 61 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVR-GEH----EK---M-----VRGIDEFLQREMDVAVEAASQQ 61 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSS-CCC----TT---E-----ESSHHHHTTSCCSEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecC-cch----hh---h-----cCCHHHHhcCCCCEEEECCCHH
Confidence 5899999999999999999877 88874 44443 321 11 2 46888988 6999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe
Q 014863 190 AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.+.+++... ++.|+.|++.
T Consensus 62 ~~~~~~~~~---l~~G~~vv~~ 80 (236)
T 2dc1_A 62 AVKDYAEKI---LKAGIDLIVL 80 (236)
T ss_dssp HHHHHHHHH---HHTTCEEEES
T ss_pred HHHHHHHHH---HHCCCcEEEE
Confidence 888877543 4567766544
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=92.29 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.||..+|+.++.. |.+|++.++. ....+.|.+.|+. +.+.+++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~~-~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEID-PINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 5788 9999999999999999999998 9987766554 4455677888986 357888999999999999
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~ 214 (417)
+... ++. +....|++|.+|+.++-+
T Consensus 338 gt~~---~i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 338 GNKD---IIMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp SSSC---SBCHHHHHHSCTTCEEEECSSS
T ss_pred CCHH---HHHHHHHHhcCCCcEEEEeCCC
Confidence 8654 233 566779999998876544
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=84.50 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|+||..++.+|++. .+++++...+.+ .+..+.+.+.|... ..+.+++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 156665334443 34345566677654 678999998 89999999999
Q ss_pred hhHHHHHHHHHh
Q 014863 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~a~~~Vl~eI~p 200 (417)
..+.++....+.
T Consensus 76 ~~h~~~~~~al~ 87 (344)
T 3euw_A 76 STHVDLITRAVE 87 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999988766543
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.5e-07 Score=89.74 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=67.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|.||.+++++|.... + .+|.+++|..++..+.+.+. |+.. ..+.+.+++++++|+|++||
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~-----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi~aT 202 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVT 202 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECC
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEEEec
Confidence 89999999999999999986530 3 36888887755555555543 5321 01568899999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|......++. ...+++|++|...+.+.
T Consensus 203 ps~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 203 ADKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred cCCCCCceec--HHHcCCCCEEEECCCCC
Confidence 9864222332 25688999888776553
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=84.04 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=64.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||||||+|.||.. ++.+|++. .+.+++ +.++..++..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888764 156666 44444344455666678763 678999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE
Q 014863 190 AQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.+.++..... +.|+.|.
T Consensus 78 ~h~~~~~~al---~~gk~vl 94 (308)
T 3uuw_A 78 THYEIIKILL---NLGVHVY 94 (308)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHH---HCCCcEE
Confidence 9998876654 3455443
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=86.11 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=85.4
Q ss_pred cCCCCEEEEE-cc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEE
Q 014863 108 FNGINQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (417)
Q Consensus 108 l~g~kkIgII-G~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiVi 183 (417)
+.- ++|+|| |+ |++|..++++|++. |+++++..++.... ..-.|+.. ..+++|+.+ ..|+++
T Consensus 11 ~~~-~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~av 76 (305)
T 2fp4_A 11 VDK-NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASV 76 (305)
T ss_dssp CCT-TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEE
T ss_pred hCC-CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEE
Confidence 344 789999 98 99999999999999 99865555543211 01257775 568999888 899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCC-cEEEeccCCchhhHH
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI-GVIAVCPKGMGPSVR 245 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di-~VI~v~Pn~pg~~vr 245 (417)
+++|+..+.++++++... .-..+|.+++|+..+...+ .....+.. .+..+.||+||...+
T Consensus 77 I~vP~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~-l~~~a~~~~gi~liGPnc~Gii~p 137 (305)
T 2fp4_A 77 IYVPPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVR-VKHRLLRQGKTRLIGPNCPGVINP 137 (305)
T ss_dssp ECCCHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHTTCSSCEEECSSSCEEEET
T ss_pred EecCHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHH-HHHHHHhcCCcEEEeCCCCeEecc
Confidence 999999999999875542 2245688999997543111 01112233 455688999887743
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-06 Score=83.66 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
+||||||+|.||..++.+|++. .+++++. .++...+..+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 1566653 444433444556667765 468999987 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++...... .|+.|.
T Consensus 74 ~~h~~~~~~al~---~gk~v~ 91 (331)
T 4hkt_A 74 DTHADLIERFAR---AGKAIF 91 (331)
T ss_dssp GGHHHHHHHHHH---TTCEEE
T ss_pred hhHHHHHHHHHH---cCCcEE
Confidence 999988766543 455433
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=84.86 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=78.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||+|||+ |.||..++++|++. |++++...++..... ...|+.. ..+++|+.+ +.|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g~---~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCcccc---eeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999999 99999999999998 888655554421100 1357664 568899887 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
..+.+++.+.... ....+|+++.|+..+...+ ....-+...+..+.||++|-.
T Consensus 75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~~~~~~-l~~~A~~~gv~liGPNc~Gi~ 127 (288)
T 2nu8_A 75 PFCKDSILEAIDA-GIKLIITITEGIPTLDMLT-VKVKLDEAGVRMIGPNTPGVI 127 (288)
T ss_dssp GGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSCCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEecCCccee
Confidence 9999999876553 2233566888997543111 001111123344678886655
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=84.32 Aligned_cols=87 Identities=9% Similarity=0.058 Sum_probs=64.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.||..++.+|++. ..+++++.. ++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999875 015666534 444344445566678764 678999986 79999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++..... +.|+.|.
T Consensus 86 ~~h~~~~~~al---~~gk~v~ 103 (354)
T 3q2i_A 86 GLHPTQSIECS---EAGFHVM 103 (354)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCCEE
Confidence 99988776543 3455443
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=73.00 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=77.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||. |.+|..++++|++. |++|+ ....... .-.|... ..+++|+....|++++++|
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v~-~Vnp~~~-----~i~G~~~----y~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH------GYDVY-PVNPKYE-----EVLGRKC----YPSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEE-EECTTCS-----EETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC------CCEEE-EECCCCC-----eECCeec----cCCHHHcCCCCCEEEEEeC
Confidence 89999999 79999999999999 98743 3332221 1146664 5678888888999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+..+.++++++...-. +.+ .+..|+.-..+.+ ..-..++++ +.||+++-...+++
T Consensus 87 ~~~~~~vv~~~~~~gi-~~i-~~~~g~~~~~l~~--~a~~~Gi~v--vGpnc~gv~~~~~~ 141 (144)
T 2d59_A 87 PKLTMEYVEQAIKKGA-KVV-WFQYNTYNREASK--KADEAGLII--VANRCMMREHERLL 141 (144)
T ss_dssp HHHHHHHHHHHHHHTC-SEE-EECTTCCCHHHHH--HHHHTTCEE--EESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEE-EECCCchHHHHHH--HHHHcCCEE--EcCCchhhcchhhc
Confidence 9999999988665432 234 4555553111111 011235554 45999998876664
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=83.02 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.||..++.+|++. .+.+++. .++..++..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999885 1566653 3444444456666777731 2678999987 89999999999
Q ss_pred hhHHHHHHHHH
Q 014863 189 AAQADNYEKIF 199 (417)
Q Consensus 189 ~a~~~Vl~eI~ 199 (417)
..+.++....+
T Consensus 78 ~~h~~~~~~al 88 (330)
T 3e9m_A 78 QGHYSAAKLAL 88 (330)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988876544
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=84.59 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=80.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
+||+|+|+ |+||..+++++++. |++++....+..... .-.|+.. ..+++|+.+ .+|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGM---EVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCCc---eECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 988655555432100 1357765 568899888 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
..+.+++++.... .-..+|+++.||......+ .....+...+..+.||++|-.
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~a~~~gi~vigPNc~Gii 127 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPTLDMVR-AVEEIKALGSRLIGGNCPGII 127 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEEESSSCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEeCCCCeEE
Confidence 9999999886553 2234677899997532111 001111223445668887665
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=87.75 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=71.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC---------CC----------
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT---------- 168 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d---------~~---------- 168 (417)
+.+ .||+|||.|.+|...++.++.. |.+|++.+++. ...+.+.+.|....+ +.
T Consensus 182 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~-~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 182 VKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVRP-EVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp ECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSSG-GGHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred cCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence 466 8999999999999999999998 99988776654 446667777765310 00
Q ss_pred --cCCHHhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 169 --LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 --~~~~~Eav~~ADiViLav--pd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
..+++++++++|+||.++ |......++ ++....||+|++|++++
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 114568899999999886 433333333 57888899999999886
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-06 Score=83.06 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEE-EecCCchhHHHHHHcCc--eecCCCcCCHHhhhcc--CCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKV-GLRKGSRSFAEARAAGF--TEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~--~~~d~~~~~~~Eav~~--ADiViLa 185 (417)
.||||||+|.||..++.+|+ .. .+.+++. .++..++..+.+.+.|+ .. ..+.++++++ .|+|+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 73 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVT 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEC
Confidence 58999999999999999998 42 1566653 34443444556667773 33 6789999876 9999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+|+..+.++....+ +.|+.|.
T Consensus 74 tp~~~h~~~~~~al---~~Gk~vl 94 (344)
T 3mz0_A 74 SWGPAHESSVLKAI---KAQKYVF 94 (344)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCchhHHHHHHHHH---HCCCcEE
Confidence 99999988876543 4555443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-06 Score=72.04 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=64.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCCH---Hhh-hccC
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGS 179 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~---~Ea-v~~A 179 (417)
++...+ ++|.|||+|.+|..+++.|+.. |++|++..+...+ .+.+. ..|.........+. .++ +.++
T Consensus 14 ~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~~-~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 14 SKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEYA-FHRLNSEFSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp ---CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGGG-GGGSCTTCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred hcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHhcCCCcEEEecCCCHHHHHHcCcccC
Confidence 567778 9999999999999999999998 9988877765433 33443 45643211111222 223 6789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCc-EEEEecc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
|+||+++|+......+..+...+.+.. ++..+.+
T Consensus 86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 86 DMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 999999998777665555555443333 4444443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=68.51 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHh---h-hccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---T-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E---a-v~~ADiViLavp 187 (417)
++|.|+|+|.+|.++++.|.+. |++|++.++. +...+.+.+.|+....+...+.+. + +.++|+|++++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKS-KEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7899999999999999999999 9988776654 445566666776432111223322 1 468999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEec
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+......+-.....+....++..+.
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~ 104 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVS 104 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEc
Confidence 7665443334333343444555443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-06 Score=83.98 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.||..++.+|++. .+.+++. .++...+..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 6899999999999999999774 1566653 3444344445566677631 1578999987 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEE
Q 014863 189 AAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL 208 (417)
..+.++....+ +.|+.|
T Consensus 75 ~~h~~~~~~al---~~gk~v 91 (344)
T 3ezy_A 75 NTHSELVIACA---KAKKHV 91 (344)
T ss_dssp GGHHHHHHHHH---HTTCEE
T ss_pred cchHHHHHHHH---hcCCeE
Confidence 99988776544 345543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.6e-06 Score=89.23 Aligned_cols=88 Identities=9% Similarity=0.207 Sum_probs=71.7
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhh---hhhhhhhccChhHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILY 386 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~---~~~~~~~~~~~~~~~~m~ 386 (417)
+|.-.+.+.|.||.+.++|++|.+++++++++.++.+.+++.++|+++|+|+||++.+. .|...|. +- ..+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~ 467 (525)
T 3fr7_A 394 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFD---YI---LTQ 467 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTHHHHHTHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHH---HH---HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHhhhHHHHHHHhhhhhhhhhhhHHHHhhccHhhhcccccchHhHH---HH---HHH
Confidence 56666799999999999999999999999999999999999999999999999976542 2333222 22 237
Q ss_pred HHHHhhhcchhH-HHHHH
Q 014863 387 ECYEDVAAGSEI-RSVVL 403 (417)
Q Consensus 387 ~~~~~v~~g~~~-~~~~~ 403 (417)
++|..|.+|..+ |+++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (525)
T 3fr7_A 468 QAFVTVDKDAPINQDLIS 485 (525)
T ss_dssp THHHHHHTTCCCCHHHHH
T ss_pred HhHHHhhcCCcchHHHHH
Confidence 999999999988 44443
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=84.90 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=66.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|.||.+++++|+... +. +|.+++|+ +..+.+.+ .|+... .+ +.++++++||+|++||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT 191 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF-----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT 191 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred cEEEEECccHHHHHHHHHHHHhC-----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence 89999999999999999998741 33 68888877 44444443 365321 14 8999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchh
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i 216 (417)
|... .++. .+.+++|++|++++.+..
T Consensus 192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~p 217 (313)
T 3hdj_A 192 RSTT--PLFA--GQALRAGAFVGAIGSSLP 217 (313)
T ss_dssp CCSS--CSSC--GGGCCTTCEEEECCCSST
T ss_pred CCCC--cccC--HHHcCCCcEEEECCCCCC
Confidence 9742 2332 356899999988876643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.2e-06 Score=72.13 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=77.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||. |++|..++++|++. |++|+ .... .+..+ .-.|... ..+++|+....|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~-~vnp-~~~~~--~i~G~~~----~~sl~el~~~vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL-PVNP-RFQGE--ELFGEEA----VASLLDLKEPVDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE-EECG-GGTTS--EETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE-EeCC-CcccC--cCCCEEe----cCCHHHCCCCCCEEEEEeC
Confidence 89999999 89999999999999 98743 2222 11000 1146664 5678888888999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+....++++++...-- +.++...+.+.-...+. .-..+++++ .||+++-...++.
T Consensus 80 ~~~~~~v~~~~~~~gi-~~i~~~~g~~~~~~~~~---a~~~Gir~v--gpnc~g~~~~~~~ 134 (140)
T 1iuk_A 80 PSALMDHLPEVLALRP-GLVWLQSGIRHPEFEKA---LKEAGIPVV--ADRCLMVEHKRLF 134 (140)
T ss_dssp HHHHTTTHHHHHHHCC-SCEEECTTCCCHHHHHH---HHHTTCCEE--ESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEEEEcCCcCHHHHHHH---HHHcCCEEE--cCCccceEChhhc
Confidence 9988899988665432 34555444443221111 102355654 6999998865554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=5.4e-06 Score=81.51 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=60.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~Eav~~ADi 181 (417)
|||+|||.|+||.++|..|... |+ +|++.++...+....+.. .+ .... ..+ .+++++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~---~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY---AGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE---ECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE---eCC-HHHhCCCCE
Confidence 5899999999999999999998 88 887766653322222211 11 1110 234 467899999
Q ss_pred EEEeecchh----------------HHHHHHHHHhcCCCCcE-EEEeccch
Q 014863 182 VLLLISDAA----------------QADNYEKIFSCMKPNSI-LGLSHGFL 215 (417)
Q Consensus 182 ViLavpd~a----------------~~~Vl~eI~p~Lk~Gai-L~~a~G~~ 215 (417)
||+++|... ..++++.|.++. |+.+ |.++-+..
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVD 120 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHH
Confidence 999999643 245666677764 5554 44444554
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.1e-06 Score=80.18 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
+||||||+|.||..+ +.+|++. +.+++. .++..++..+.+.+.|... ...+.+++++ ++|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 489999999999998 8888775 777654 4444334445566677641 1568889886 5999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++.... |+.|+.|.
T Consensus 72 ~~~h~~~~~~a---l~~Gk~v~ 90 (332)
T 2glx_A 72 NELHREQTLAA---IRAGKHVL 90 (332)
T ss_dssp GGGHHHHHHHH---HHTTCEEE
T ss_pred hhHhHHHHHHH---HHCCCeEE
Confidence 99998877654 34566443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=68.36 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH---h-hhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---E-av~~ADiViLavp 187 (417)
++|.|||+|.+|..+++.|++. |++|++.++. ....+.+.+.|+....+...+.+ + -+.++|+|++++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETS-RTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 5799999999999999999999 9988776655 45566677778753211122221 2 2578999999999
Q ss_pred chhHHH
Q 014863 188 DAAQAD 193 (417)
Q Consensus 188 d~a~~~ 193 (417)
+.....
T Consensus 81 ~~~~n~ 86 (140)
T 3fwz_A 81 NGYEAG 86 (140)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 877654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-06 Score=82.31 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhh--ccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav--~~ADiViLavpd 188 (417)
.||||||+|.||..++.+|++. .+++++.. ++...+..+.+.+.|+.. ..+.++++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999999999999765 15665533 444334445566678764 67899999 679999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++....+ +.|+.|.
T Consensus 77 ~~h~~~~~~al---~~gk~vl 94 (354)
T 3db2_A 77 DKHAEVIEQCA---RSGKHIY 94 (354)
T ss_dssp TSHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HcCCEEE
Confidence 99988776543 3455443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.6e-06 Score=84.80 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=68.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCcee--cCCCcCCHHhhhccCCeE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~--~d~~~~~~~Eav~~ADiV 182 (417)
..+.| ++|+|||+|.+|.++++.++.. |.+|++.++. ....+.+.+ .|... ......+.++.++++|+|
T Consensus 164 ~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~-~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvV 235 (377)
T 2vhw_A 164 PGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDIN-IDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235 (377)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEE
Confidence 46889 9999999999999999999988 9988776665 333444444 45421 000012466788899999
Q ss_pred EEeecchh--HHHH-HHHHHhcCCCCcEEEEec
Q 014863 183 LLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~a--~~~V-l~eI~p~Lk~GaiL~~a~ 212 (417)
|.+++... ...+ .++..+.|++|.+|++++
T Consensus 236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 99885322 1222 356678899999988775
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-06 Score=85.48 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=71.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-------------CCc-----
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL----- 169 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-------------~~~----- 169 (417)
+.+ .||+|||+|.+|...++.++.. |.+|++++++.. ..+.+.+.|..... +..
T Consensus 188 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 188 VPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRPA-AKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp ECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSTT-HHHHHHHTTCEECCCCC-----------------C
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHHcCCceeecccccccccccccchhhhcch
Confidence 566 8999999999999999999988 999887766643 45666667764200 001
Q ss_pred -------CCHHhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 170 -------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 -------~~~~Eav~~ADiViLav--pd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.++++++++||+||.++ |....+.++ ++....||+|++|++++
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 14678899999999885 543333333 57888999999999886
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=80.29 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~ 189 (417)
.||||||+|.||..++.+|+.. .+++++...+.+....+.+.+.|+.. ..+.++++. +.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5899999999999999999875 15566544455455556677778764 678999987 789999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE
Q 014863 190 AQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.+.++....+ +.|+.|.
T Consensus 77 ~h~~~~~~al---~aGkhVl 93 (359)
T 3e18_A 77 SHKELAISAL---EAGKHVV 93 (359)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HCCCCEE
Confidence 9988876544 3566443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=78.46 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=61.6
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCc-hhHHHHHHcCc-eecCCCcCCHHhhhc--cCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~-~~~d~~~~~~~Eav~--~ADiViLav 186 (417)
.||||||+|.||..++..|+ .. .+++++...+.+. +..+.+.+.|. .. ..+.+++++ ++|+|++++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVETT----YTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSEE----ESCHHHHHTTSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 68999999999999999998 43 1566544444433 33344556676 32 568889886 699999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+..+.++.... |+.|+.|.
T Consensus 80 p~~~h~~~~~~a---l~~G~~v~ 99 (346)
T 3cea_A 80 PTPFHPEMTIYA---MNAGLNVF 99 (346)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred ChHhHHHHHHHH---HHCCCEEE
Confidence 999998877654 34566544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=69.72 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhh--hccCC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Ea--v~~AD 180 (417)
..+.+ ++|.|||+|.+|..+++.|++.- |++|++.+++ ....+.+.+.|+....+...+ ..++ +.++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~~-----g~~V~vid~~-~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRARY-----GKISLGIEIR-EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHHH-----CSCEEEEESC-HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhcc-----CCeEEEEECC-HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 44667 89999999999999999997630 5777776665 444566666776421111223 2344 67899
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCC
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~G 205 (417)
+||+++|+......+-.....+.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~ 132 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYK 132 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCC
Confidence 9999999866543332333334433
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=80.09 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCceEE-EEecCCchhHHHHHHcC--ceecCCCcCCHHhhhc--cCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAG--FTEENGTLGDIYETIS--GSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G--~~~~d~~~~~~~Eav~--~ADiViLa 185 (417)
.||||||+|.||..++.+|+ .. .+.+++ +.++...+..+.+.+.| ... ..+.+++++ +.|+|+++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV-----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred eeEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEc
Confidence 58999999999999999998 42 156665 34444445556677777 333 678999887 58999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+|+..+.++....+ +.|+-|.
T Consensus 95 tp~~~h~~~~~~al---~aGk~Vl 115 (357)
T 3ec7_A 95 ASNEAHADVAVAAL---NANKYVF 115 (357)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HCCCCEE
Confidence 99999988776544 3455443
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-05 Score=78.04 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||||||+|.||.. ++..|++. .+++++ +.++...+..+.+.+.|+.. ..+.+++.++.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 68999999999996 88888763 156665 44554444445566667653 567777667899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEE
Q 014863 190 AQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL 208 (417)
.+.++....+ +.|+.|
T Consensus 77 ~h~~~~~~al---~~G~~v 92 (319)
T 1tlt_A 77 SHFDVVSTLL---NAGVHV 92 (319)
T ss_dssp HHHHHHHHHH---HTTCEE
T ss_pred hHHHHHHHHH---HcCCeE
Confidence 9988776543 456543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=64.81 Aligned_cols=91 Identities=16% Similarity=0.051 Sum_probs=61.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavp 187 (417)
++|+|+|.|.||.++++.|.+. | ++|++..|+. ...+.....|+........ +..++++++|+||.++|
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHDL-AALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESCH-HHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCH-HHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 8999999999999999999998 8 7887777653 3344444455432111122 24467789999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEec
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
......+++.... .|...++..
T Consensus 79 ~~~~~~~~~~~~~---~g~~~~~~~ 100 (118)
T 3ic5_A 79 FFLTPIIAKAAKA---AGAHYFDLT 100 (118)
T ss_dssp GGGHHHHHHHHHH---TTCEEECCC
T ss_pred chhhHHHHHHHHH---hCCCEEEec
Confidence 8877666665433 454444443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=66.53 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=59.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH---hh-hccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---Ea-v~~ADiVi 183 (417)
+++ ++|.|+|+|.+|..+++.|++. |++|++.++. ....+.+.+.|.........+.+ ++ +.++|+|+
T Consensus 4 ~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 4 IKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp --C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 445 7899999999999999999998 8887776654 33333333445432111122322 22 67899999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEecc
Q 014863 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 184 Lavpd~-a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+++++. .....+......+.+..++..+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred ECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999975 332233344444555555555544
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00016 Score=74.87 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=111.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-------------------HHHcCceecCCCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-------------------ARAAGFTEENGTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-------------------A~~~G~~~~d~~~~~ 171 (417)
|.+|+|||+|-+|..+|..|.+. |++|+ |.+.+++..+. +.+.|-.. ...+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~------G~~V~-g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~---~tt~ 90 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL------GHRVV-GYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLS---FAES 90 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---ECSS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCcEE-EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCee---EEcC
Confidence 47999999999999999999999 99875 56655433222 22233111 1457
Q ss_pred HHhhhccCCeEEEeecc----------hhHHHHHHHHHhcCC---CCcEEEEec----cch--h-h-hhhccccCCCCCC
Q 014863 172 IYETISGSDLVLLLISD----------AAQADNYEKIFSCMK---PNSILGLSH----GFL--L-G-HLQSMGLDFPKNI 230 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd----------~a~~~Vl~eI~p~Lk---~GaiL~~a~----G~~--i-~-~~~~~~i~~~~di 230 (417)
.++++++||++|+|||. .....+.+.|.++|+ +|++|++-+ |.. + . .+++ . ..+.
T Consensus 91 ~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~---~-~~~~ 166 (444)
T 3vtf_A 91 AEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE---E-AGGV 166 (444)
T ss_dssp HHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT---T-TTTC
T ss_pred HHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH---h-CCCC
Confidence 88999999999999872 123456677888886 467776543 443 1 1 1222 1 1233
Q ss_pred cE-EEeccC--CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccc
Q 014863 231 GV-IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (417)
Q Consensus 231 ~V-I~v~Pn--~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqt 307 (417)
++ +...|. -||..++++..- +-++. . ..+.++.+.+..+...+....+ .++. .+-++..+-+.+
T Consensus 167 ~f~v~~~PErl~eG~a~~d~~~~---------~riVi-G-~~~~~a~~~~~~ly~~~~~~~~-~~~~-~~AE~~Kl~eN~ 233 (444)
T 3vtf_A 167 KFSVASNPEFLREGSALEDFFKP---------DRIVI-G-AGDERAASFLLDVYKAVDAPKL-VMKP-REAELVKYASNV 233 (444)
T ss_dssp CCEEEECCCCCCTTSHHHHHHSC---------SCEEE-E-ESSHHHHHHHHHHTTTSCSCEE-EECH-HHHHHHHHHHHH
T ss_pred CceeecCcccccCCccccccccC---------CcEEE-c-CCCHHHHHHHHHHHhccCCCEE-Eech-hHHHHHHHHHHH
Confidence 33 555663 456666555542 21221 1 1245677777888777765422 2222 111222222222
Q ss_pred cccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 308 ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 308 vL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
-+ ..=-+++..+...+-+.|++..+..+
T Consensus 234 ~r-avnIa~~NEla~ice~~GiDv~eV~~ 261 (444)
T 3vtf_A 234 FL-ALKISFANEVGLLAKRLGVDTYRVFE 261 (444)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 11 11122566666666777777655544
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.03 E-value=9.4e-06 Score=79.02 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=58.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~ 189 (417)
+||||||+|.||. .++.+|+.. .+.++++.++..++..+.+.+.|+.. ...+..+++ +++|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599998764 15676655554444445566677641 023445555 7899999999999
Q ss_pred hHHHHHHHHHhcCCCCc
Q 014863 190 AQADNYEKIFSCMKPNS 206 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~Ga 206 (417)
.+.++....+ +.|+
T Consensus 75 ~h~~~~~~al---~~Gk 88 (323)
T 1xea_A 75 VHSTLAAFFL---HLGI 88 (323)
T ss_dssp GHHHHHHHHH---HTTC
T ss_pred hHHHHHHHHH---HCCC
Confidence 9988876543 3455
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.5e-06 Score=79.64 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.||..++.+|+.. .+.+++ +.++...+..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999876 034544 34444444445566667631 1578999987 79999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++....+ +.|+-|.
T Consensus 78 ~~h~~~~~~al---~aGk~Vl 95 (329)
T 3evn_A 78 QDHYKVAKAAL---LAGKHVL 95 (329)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCeEE
Confidence 99988776543 4565443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=79.61 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=63.6
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.||||||+|.||. .++.+|++. .+++++ +.++...+..+.+.+.|+.. +.+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 799999875 145655 44454445556667778875 578999986 5899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 014863 188 DAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL 208 (417)
+..+.++....+ +.|+-|
T Consensus 99 ~~~h~~~~~~al---~aGk~V 116 (350)
T 3rc1_A 99 AVLHAEWIDRAL---RAGKHV 116 (350)
T ss_dssp GGGHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HCCCcE
Confidence 999998876644 345543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=78.00 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHH--HcCceec-CC--CcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NG--TLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G~~~~-d~--~~~~~~Eav~~ADiViL 184 (417)
+||+|||.|+||.++|..|... |+ +|.+.++...+....+. ..+.... +. ...+..++++++|+||+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 8999999999999999999998 88 88776665322211122 2332100 00 01112467889999999
Q ss_pred eecchhH----------------HHHHHHHHhcCCCCcEE-EEeccchh
Q 014863 185 LISDAAQ----------------ADNYEKIFSCMKPNSIL-GLSHGFLL 216 (417)
Q Consensus 185 avpd~a~----------------~~Vl~eI~p~Lk~GaiL-~~a~G~~i 216 (417)
+++.... .++++++.++ .++.+| ++.-|+..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 9953322 2566777775 566654 46667754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-05 Score=71.36 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=62.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhh-hccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Ea-v~~ADiViLavp 187 (417)
|||.|||+|.+|..+++.|.+. |++|++.++..+...+.+...|.....+...+ ..++ ++++|+|+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5799999999999999999999 99988777654433333444565321111223 2233 788999999999
Q ss_pred chhHHHHHHHHHhcC-CCCcEEEEe
Q 014863 188 DAAQADNYEKIFSCM-KPNSILGLS 211 (417)
Q Consensus 188 d~a~~~Vl~eI~p~L-k~GaiL~~a 211 (417)
+.....++..++..+ ....+++-+
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 988766665555543 333455433
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.5e-05 Score=76.37 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH-------c--CceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~--G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|+||.++|..|... |+ +|++.++..++....+.+ . ..... ...+. +++++||+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~--~t~d~-~a~~~aDi 75 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI--GTDDY-ADISGSDV 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999999998 88 877776654322221111 0 11110 02455 78999999
Q ss_pred EEEee--------------cch--hHHHHHHHHHhcCCCCcEEE-Eeccc
Q 014863 182 VLLLI--------------SDA--AQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 182 ViLav--------------pd~--a~~~Vl~eI~p~Lk~GaiL~-~a~G~ 214 (417)
||+++ +.. ...+++++|.++. ++++|+ .+...
T Consensus 76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 99999 322 2346777888875 566554 44443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.96 E-value=6.6e-06 Score=81.23 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=64.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC---ceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
++|+|||+|.||.+++++|+... ...+|.+++|..++..+.+.+.+ +.. . +.+.++++ ++|+|+++||.
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~----~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVF----DIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEECCCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC----CccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEeeCC
Confidence 89999999999999999998740 02367777777555555554432 211 1 45788999 99999999996
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. .++. ...+++|++|.+.+.+.
T Consensus 198 ~~--pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 198 RK--PVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp SS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred CC--ceec--HHHcCCCeEEEECCCCC
Confidence 43 2221 25688998888775553
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3e-05 Score=76.66 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.||..++..|... .+++++. .++..++..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999999874 1455543 34443344456667774100001568889886 59999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++.... |+.|+.|.
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 45566443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=82.00 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc-----------------
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~----------------- 169 (417)
.+.| ++|+|||+|.+|...++.++.. |.+|++.+++. ...+.+.+.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~~-~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCG-GGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 4788 9999999999999999999988 98887766653 345566777765310000
Q ss_pred ------CCHHhhhccCCeEEEe--ecchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ------~~~~Eav~~ADiViLa--vpd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+.++.++++|+||.+ +|......++ ++....|++|.+|++++
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0256788899999999 5422222333 45667799999998776
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.1e-06 Score=79.20 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~ 189 (417)
+||||||+|.||..++.+|++. .+++++...+.+....+...+. +.. ..+.+++++ ++|+|++++|+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CVI----ESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CEE----ESSTHHHHTCTTCCEEEEESCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Ccc----cCCHHHHhhCCCCCEEEEeCChH
Confidence 6899999999999999999875 0456553333333222221111 322 467888885 799999999999
Q ss_pred hHHHHHHHHHhcCCCCcEE
Q 014863 190 AQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL 208 (417)
.+.++..+. ++.|+.|
T Consensus 81 ~h~~~~~~a---l~~Gk~v 96 (315)
T 3c1a_A 81 THAEITLAA---IASGKAV 96 (315)
T ss_dssp GHHHHHHHH---HHTTCEE
T ss_pred HHHHHHHHH---HHCCCcE
Confidence 998887654 3456543
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=77.89 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=62.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.||..++.+|+.. . +.+++++. +++..++..+.+.+.|+.. ...++++++. +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~--~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-P--RSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-C--TTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-C--CCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6999999999999999999764 0 00234443 3444344556667777731 1678999987 69999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++....+ +.|+.|.
T Consensus 77 ~~H~~~~~~al---~~GkhVl 94 (334)
T 3ohs_X 77 PQHKAAVMLCL---AAGKAVL 94 (334)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---hcCCEEE
Confidence 99988776543 4565443
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-05 Score=73.68 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=90.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||+|+|+|.||..+++.+.+. +.+++...+.+.. ...|+.. ..++++++ ++|+||-.+.|..
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 58999999999999999999887 5555443444332 1367664 56778877 9999997777776
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHH--HHHhhcccccC-CCceEEEeec
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING-AGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~e~~G-~Gv~~liav~ 266 (417)
..+.++ ++.|. +|+-..|++-..++. ....-+.+. +...||..--+.- .+-+.--...+ +-+- ++-.|
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~-l~~aa~~~~-v~~a~N~S~Gv~l~~~~~~~aa~~l~~~die-I~E~H 138 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNK-LDELSQNMP-VFFSANMSYGVHALTKILAAAVPLLDDFDIE-LTEAH 138 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHH-HHHHTTTSE-EEECSSCCHHHHHHHHHHHHHHHHTTTSEEE-EEEEE
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHH-HHHHHhcCC-EEEECCccHHHHHHHHHHHHHHHhcCCCCEE-EEEcC
Confidence 665553 56665 455566886432221 011123444 4789988755410 00000000001 1122 23334
Q ss_pred C----C-CCHHHHHHHHHHHHHhCC
Q 014863 267 Q----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 267 q----d-~sgea~e~a~al~~aiG~ 286 (417)
. | +||.|+.+++.+ ...|.
T Consensus 139 H~~K~DaPSGTA~~la~~i-~~~~~ 162 (243)
T 3qy9_A 139 HNKKVDAPSGTLEKLYDVI-VSLKE 162 (243)
T ss_dssp CTTCCSSSCHHHHHHHHHH-HHHST
T ss_pred CCCCCCCCCHHHHHHHHHH-HhcCc
Confidence 3 2 789999999999 88874
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-06 Score=83.50 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=62.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++| +|+|||.|.||.+++.+|.+. |. +|.+.+|+.++..+.+.+.+... ..+..++++++|+||.+|
T Consensus 107 ~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 107 VKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp CCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEECS
T ss_pred CCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEECC
Confidence 455 899999999999999999998 88 88888887444333333333222 456778899999999999
Q ss_pred cchhHHH--HHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQAD--NYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~--Vl~eI~p~Lk~GaiL~~a 211 (417)
|.....+ .++ .+.++++++|++.
T Consensus 175 p~gm~p~~~~i~--~~~l~~~~~V~Di 199 (253)
T 3u62_A 175 SVGMKGEELPVS--DDSLKNLSLVYDV 199 (253)
T ss_dssp STTTTSCCCSCC--HHHHTTCSEEEEC
T ss_pred CCCCCCCCCCCC--HHHhCcCCEEEEe
Confidence 8643221 111 1235678877644
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-06 Score=80.18 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=65.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCc---eecCCCcCCHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~Eav~~ADiV 182 (417)
.++| ++|.|||.|.||.+++..|.+. |. +|++.+|+.++..+.+.+.+. ... ...+..+++.++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 4678 9999999999999999999998 97 898888876665566666543 110 012456778899999
Q ss_pred EEeecchhHHHH--HHHH-HhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADN--YEKI-FSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~V--l~eI-~p~Lk~GaiL~~a 211 (417)
|.++|......+ . .+ ...++++.+|+++
T Consensus 209 In~t~~~~~~~~~~~-~i~~~~l~~~~~v~D~ 239 (297)
T 2egg_A 209 INTTSVGMHPRVEVQ-PLSLERLRPGVIVSDI 239 (297)
T ss_dssp EECSCTTCSSCCSCC-SSCCTTCCTTCEEEEC
T ss_pred EECCCCCCCCCCCCC-CCCHHHcCCCCEEEEc
Confidence 999997654210 0 01 1235566666644
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=76.62 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=62.8
Q ss_pred ccCCCCEEEEEcccchHHHH-HHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiV 182 (417)
.++.|.||||||+|.||... +..+++. .+.+++. +++..++..+.|.+.|+.. ...|.+|+++ +.|+|
T Consensus 19 ~~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV 90 (350)
T 4had_A 19 YFQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAV 90 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEE
T ss_pred cccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEE
Confidence 45567899999999999864 5666654 1456553 4444445567777888742 1578999885 57999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
+++||+..+.++....+. .|+-|
T Consensus 91 ~I~tP~~~H~~~~~~al~---aGkhV 113 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAAD---AGKHV 113 (350)
T ss_dssp EECSCGGGHHHHHHHHHH---TTCEE
T ss_pred EEeCCCchhHHHHHHHHh---cCCEE
Confidence 999999999988766443 45543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=3e-05 Score=78.63 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=59.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 164 ~l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~a 234 (404)
T 1gpj_A 164 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSA 234 (404)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEEC
T ss_pred cccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEc
Confidence 3688 9999999999999999999998 98 888887765544466777776421 124667888999999999
Q ss_pred ecchh
Q 014863 186 ISDAA 190 (417)
Q Consensus 186 vpd~a 190 (417)
+|...
T Consensus 235 t~~~~ 239 (404)
T 1gpj_A 235 TAAPH 239 (404)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.6e-05 Score=75.17 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=58.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--Cc------eecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GF------TEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~------~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.++|..|... |+ +|++.++...+....+.+. +. .. ...+ .+++++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i---~~~~-~~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRV---WHGG-HSELADAQV 70 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEE---EEEC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEE---EECC-HHHhCCCCE
Confidence 5899999999999999999988 87 7777665533222223321 11 11 0123 467999999
Q ss_pred EEEeecchhH----------------HHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 182 VLLLISDAAQ----------------ADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 182 ViLavpd~a~----------------~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
||++++.... .++++++.++ .|+.+|+ .+-+..
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 9999964322 4555667776 4676654 344444
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=78.45 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=69.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC---------------C
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---------------D 171 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---------------~ 171 (417)
.+.| ++|+|||+|.+|...++.++.. |.+|++.+++.. ..+.+.+.|.....-... +
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~~-~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s 240 (384)
T 1l7d_A 169 TVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAA-TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 240 (384)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCST-THHHHHHTTCEECCC-------------------
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeecccccccccccccchhhcC
Confidence 5788 9999999999999999999988 988777666543 455666677643100000 0
Q ss_pred ----------HHhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 172 ----------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ----------~~Eav~~ADiViLav--pd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
..+.++++|+||.++ |......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 241 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp ----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 567788999999988 422222233 55667799999988776
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-06 Score=82.50 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=61.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+. ++... ...+..++++++|+||.+
T Consensus 114 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~--~~~~~--~~~~~~~~~~~aDiVIna 182 (277)
T 3don_A 114 GIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSL--NINKI--NLSHAESHLDEFDIIINT 182 (277)
T ss_dssp TGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCS--CCEEE--CHHHHHHTGGGCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHH--hcccc--cHhhHHHHhcCCCEEEEC
Confidence 4678 9999999999999999999998 98 88888887554433332 22210 133556778899999999
Q ss_pred ecchhHHHHHHHH-HhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKI-FSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI-~p~Lk~GaiL~~a 211 (417)
||......+-..+ ...++++.+|+|.
T Consensus 183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~ 209 (277)
T 3don_A 183 TPAGMNGNTDSVISLNRLASHTLVSDI 209 (277)
T ss_dssp CC-------CCSSCCTTCCSSCEEEES
T ss_pred ccCCCCCCCcCCCCHHHcCCCCEEEEe
Confidence 9976443321001 2346777777754
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-05 Score=73.97 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=56.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||||||+|+||..++..|++. .+++++...+.+.... ++.|+.. ....++.+. .++|+|++|+|+..+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence 5899999999999999999874 1567653344433322 2256431 113344444 789999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 014863 192 ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.++.... ++.|+.|++.
T Consensus 79 ~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEI---LKKGICTADS 95 (304)
T ss_dssp HHHHHHH---HTTTCEEEEC
T ss_pred HHHHHHH---HHcCCeEEEC
Confidence 8877654 4457766554
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.7e-05 Score=75.47 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=61.9
Q ss_pred cccCCCC--EEEEEcccchHHHHHHHHHhhhhh--hcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--c
Q 014863 106 DAFNGIN--QIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G 178 (417)
Q Consensus 106 ~~l~g~k--kIgIIG~G~mG~AiA~~Lr~s~~~--~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ 178 (417)
-++..|| ||||||+|.||..++.+++....- .-.+.+++. .++..++..+.+.+.|+.. ...|.+|+++ +
T Consensus 18 ~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~ 94 (393)
T 4fb5_A 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPE 94 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTT
T ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCC
Confidence 4666665 799999999999998887653000 001345543 4444455667778888742 1578999885 5
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.|+|+++||+..+.++....+. .|+-|.
T Consensus 95 iDaV~IatP~~~H~~~a~~al~---aGkhVl 122 (393)
T 4fb5_A 95 VDVVSVTTPNQFHAEMAIAALE---AGKHVW 122 (393)
T ss_dssp CCEEEECSCGGGHHHHHHHHHH---TTCEEE
T ss_pred CcEEEECCChHHHHHHHHHHHh---cCCeEE
Confidence 7999999999999988765443 455443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=71.89 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=61.5
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcC-ceecCCCcCCHHhhhc--cCCeEEEee
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG-FTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~--~ADiViLav 186 (417)
.||||||+|.+|. .++.+|+.. +.+++ +.++..++..+.+.+.| ... ..+.+++++ +.|+|++++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVPF----AASAEQLITDASIDLIACAV 74 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCCB----CSCHHHHHTCTTCCEEEECS
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCcc----cCCHHHHhhCCCCCEEEEeC
Confidence 6899999999996 678888765 77754 44555455556677764 332 678999886 689999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
|+..+.++.... |+.|+.|
T Consensus 75 p~~~h~~~~~~a---l~aGkhV 93 (336)
T 2p2s_A 75 IPCDRAELALRT---LDAGKDF 93 (336)
T ss_dssp CGGGHHHHHHHH---HHTTCEE
T ss_pred ChhhHHHHHHHH---HHCCCcE
Confidence 999998877654 3456643
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2e-05 Score=77.52 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||+|||+|+||..++++|.+. .+++++...+.+... +.+ .|+.. ..++++++.++|+|++++|+..+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~-~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~h 71 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL-DTK--TPVFD----VADVDKHADDVDVLFLCMGSATD 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC-SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH-hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHHH
Confidence 5899999999999999999775 135554333332222 222 46543 45677777889999999999987
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 014863 192 ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.+.+. ..++.|..|++.
T Consensus 72 ~~~~~---~al~aG~~Vv~e 88 (320)
T 1f06_A 72 IPEQA---PKFAQFACTVDT 88 (320)
T ss_dssp HHHHH---HHHTTTSEEECC
T ss_pred HHHHH---HHHHCCCEEEEC
Confidence 65544 344567765543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.3e-05 Score=76.09 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=64.3
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-ceEEE--EecCCchhHHHHHHcCceecCCCcCCHHhhhcc-------
Q 014863 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (417)
Q Consensus 112 kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G-~~Viv--g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~------- 178 (417)
.||||||+|. ||..++.+++.. + ++++. .++..++..+.+.+.|+.. .....+.+|++++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD------NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADG 85 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG------GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC------CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56653 3444445556677788831 1126789999865
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.|+|++++|+..+.++....+. .|+-|.
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~---aGkhVl 113 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALE---AGLHVV 113 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCEEEECCCcHHHHHHHHHHHH---CCCeEE
Confidence 9999999999999888765443 455443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=71.06 Aligned_cols=70 Identities=19% Similarity=0.110 Sum_probs=46.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH--HcC-------ceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~--~~G-------~~~~d~~~~~~~Eav~~ADiV 182 (417)
|||+|||.|.||.++|..|... +.|.+|++.++...+....+. ..+ ... ....+.++ +++||+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i--~~t~d~~~-l~~aDvV 73 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKV--TGSNDYAD-TANSDIV 73 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEE--EEESCGGG-GTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEE--EECCCHHH-HCCCCEE
Confidence 5899999999999999999875 125688777665433222221 111 111 01245655 8999999
Q ss_pred EEeecc
Q 014863 183 LLLISD 188 (417)
Q Consensus 183 iLavpd 188 (417)
|+++|.
T Consensus 74 iiav~~ 79 (310)
T 1guz_A 74 IITAGL 79 (310)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999964
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.74 E-value=4e-05 Score=76.72 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=63.4
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeec
Q 014863 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavp 187 (417)
.||||||+| .||..++.+|+.. .+++++...+.+ .+..+.+.+.|+.. +.+++|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 689999999 9999999999875 145665444443 34445666778764 6789999874 999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++....+. .|+.|.
T Consensus 74 ~~~H~~~~~~al~---aGk~Vl 92 (387)
T 3moi_A 74 HQFHCEHVVQASE---QGLHII 92 (387)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---CCCcee
Confidence 9999887765443 455443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=5e-05 Score=75.99 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceec-C-CCcCCHHhhhccCCeE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE-N-GTLGDIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~-d-~~~~~~~Eav~~ADiV 182 (417)
..+++ ++|+|||.|.+|.++++.++.. |.+|++.+++.. ..+.+.+ .|.... + ....+.+++++++|+|
T Consensus 162 ~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 162 PGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNHK-RLQYLDDVFGGRVITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp TBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHhcCceEEEecCCHHHHHHHHhCCCEE
Confidence 46888 9999999999999999999998 998887776533 3444433 443210 0 0012456788899999
Q ss_pred EEeecchh--HHH-HHHHHHhcCCCCcEEEEec
Q 014863 183 LLLISDAA--QAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~a--~~~-Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|.+++... ... +.++..+.|++|.+|++.+
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 99998543 222 2356778899999887665
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=71.45 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH-------c--C--ceecCCCcCCHHhhhccC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--G--FTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~--G--~~~~d~~~~~~~Eav~~A 179 (417)
+||+|||.|.||.++|..|... |+ +|++.++...+....+.. . . +.. ..+. +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~----t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG----ENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE----CCCH-HHHCCC
Confidence 6999999999999999999998 88 876666553322211111 0 1 111 2466 789999
Q ss_pred CeEEEee--cc--------------hhHHHHHHHHHhcCCCCcEEEEe
Q 014863 180 DLVLLLI--SD--------------AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 180 DiViLav--pd--------------~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+||+++ |. ....+++++|.++. |+.+|+++
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 9999998 42 11335566666665 66665433
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=6.9e-05 Score=78.40 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=71.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.|.| ++++|+|+|.+|.++|+.|+.. |.+|++.++. ......+...|+. +.+.+++++.+|+|+.++
T Consensus 262 ~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~-~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~at 328 (488)
T 3ond_A 262 MIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEID-PICALQATMEGLQ-----VLTLEDVVSEADIFVTTT 328 (488)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGTTTTCSEEEECS
T ss_pred cccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeCC
Confidence 4789 9999999999999999999999 9998776554 4345566677876 467889999999999887
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~ 214 (417)
.... ++ .+....|+++.+|+.++.+
T Consensus 329 G~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 329 GNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 5332 23 2466789999988866543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=71.10 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
+||+|||.|.+|.++|..|... |+ +|++.++..++....+.. .+....-....++++++++||+||
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6999999999999999999998 87 876666554322211111 111100001257888999999999
Q ss_pred Eee--cch--h-----------------HHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLI--SDA--A-----------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lav--pd~--a-----------------~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++ |.. . ..++.++|..+. |+.+|+.+
T Consensus 84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~ 131 (331)
T 1pzg_A 84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVV 131 (331)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 998 521 1 335556666665 66665544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00029 Score=60.97 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHHHcCceecCCCcCC---HHhh-hccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~---~~Ea-v~~ADiViL 184 (417)
++|.|+|+|.+|..+++.|.+. |++|++..+...+.. ......|+....+...+ ..++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 998887776532222 22223354321111222 2334 789999999
Q ss_pred eecchhHHHHHHHHHhcC-CCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCM-KPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~L-k~GaiL~~a~G 213 (417)
++++......+......+ ....++..+.+
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 999886655554444444 33345554444
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.8e-05 Score=76.58 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=60.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEE-EecCCchhHHHHHHcCceecC-CCcCCHHhhhc--cCCeEEEee
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d-~~~~~~~Eav~--~ADiViLav 186 (417)
.||||||+|.||. .++.+|+.. .+++++. .++...+..+.+.+.|+...+ ....+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899998764 0456543 344333444556667763100 01568888886 799999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
|+..+.++....+ +.|+.|
T Consensus 159 p~~~h~~~~~~al---~aGk~V 177 (433)
T 1h6d_A 159 PNSLHAEFAIRAF---KAGKHV 177 (433)
T ss_dssp CGGGHHHHHHHHH---HTTCEE
T ss_pred CchhHHHHHHHHH---HCCCcE
Confidence 9999988776543 456543
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.5e-05 Score=77.55 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=56.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCc---eecCCCcCCHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~Eav~~ADiV 182 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+- .. ..+.+++..++|+|
T Consensus 123 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDiI 191 (281)
T 3o8q_A 123 LLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDVI 191 (281)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEEE
T ss_pred CccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCEE
Confidence 4678 9999999999999999999998 96 888889876665555555431 11 23455655889999
Q ss_pred EEeecchhHH
Q 014863 183 LLLISDAAQA 192 (417)
Q Consensus 183 iLavpd~a~~ 192 (417)
|.+||.....
T Consensus 192 InaTp~gm~~ 201 (281)
T 3o8q_A 192 INSTSASLDG 201 (281)
T ss_dssp EECSCCCC--
T ss_pred EEcCcCCCCC
Confidence 9999987653
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.4e-05 Score=72.22 Aligned_cols=86 Identities=8% Similarity=0.046 Sum_probs=60.5
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhh----------cc
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI----------SG 178 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav----------~~ 178 (417)
|.||||||+ |.+|..++.+|++. +.+++...+.+......+... +... ..+.++.+ ++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAEF----FTEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCce----eCCHHHHHHHhhhhcccCCC
Confidence 689999999 78999999999987 776655554433322222222 2232 56788876 67
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.|+|++++|+..+.++....+ +.|+-|.
T Consensus 73 vD~V~I~tP~~~H~~~~~~al---~aGkhVl 100 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMAL---RLGANAL 100 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CcEEEECCCchhhHHHHHHHH---HCCCeEE
Confidence 999999999999988876654 3466444
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.5e-05 Score=73.18 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=61.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhh---cCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEee
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~---~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLav 186 (417)
+|||||+|.||..++.+++.. +.. ..+.+++. .++..++..+.+.+.|+.. ...|.+|+++ +.|+|+++|
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECS
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeC
Confidence 689999999999999998764 100 00124443 3444345556677778742 1578999885 579999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+..|.++....+ +.|+.|.
T Consensus 84 P~~~H~~~~~~al---~aGkhVl 103 (390)
T 4h3v_A 84 PGDSHAEIAIAAL---EAGKHVL 103 (390)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHHHHHHHHHHH---HcCCCce
Confidence 9999998776543 3566443
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=72.02 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=60.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhh-----------c
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------S 177 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav-----------~ 177 (417)
|.||||||+ |.||..++.+|++. +.+++...+.+......+... +... ..+.++.+ +
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSEF----FTEFEFFLDHASNLKRDSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESSHHHHHHHHHHHTTSTTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCcE----ECCHHHHHHhhhhhhhccCC
Confidence 589999999 79999999999987 776655554433322222222 2332 56788776 5
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+.|+|++++|+..+.++....+. .|+-|.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~---aGkhVl 101 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLR---LGCDVI 101 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCcEEEECCCcHHHHHHHHHHHH---CCCeEE
Confidence 79999999999999888766543 455443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.62 E-value=8.8e-05 Score=75.20 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=63.1
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-ceEEE--EecCCchhHHHHHHcCceecCCCcCCHHhhhcc-------
Q 014863 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (417)
Q Consensus 112 kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G-~~Viv--g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~------- 178 (417)
.||||||+|. ||..++..++.. + ++++. .++..++..+.+.+.|+.. .....+.+|++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56553 3444445556677788741 1126789998876
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.|+|++++|+..+.++.... |+.|+.|.
T Consensus 111 vD~V~I~tp~~~H~~~~~~a---l~aGkhVl 138 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEF---LKRGIHVI 138 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHH---HTTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHH---HhCCCeEE
Confidence 99999999999998877654 34566543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=71.27 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCC-------cCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~-------~~~~~Eav~~ADiV 182 (417)
+||+|||.|+||.+++..|+.. |+ +|++.+.. .. ..++...++...... ..+..+++++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~Di~-~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDAN-ES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSS-HH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCC-cc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 65 56555544 32 222221111100000 12345789999999
Q ss_pred EEeecch
Q 014863 183 LLLISDA 189 (417)
Q Consensus 183 iLavpd~ 189 (417)
|++++..
T Consensus 79 iia~~~~ 85 (316)
T 1ldn_A 79 VICAGAN 85 (316)
T ss_dssp EECCSCC
T ss_pred EEcCCCC
Confidence 9997644
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=9.1e-05 Score=74.74 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViLa 185 (417)
.|+| ++|+|+|+|+||..+|+.|.+. |.+|++.++...+..+.+.+.|... .+.+++.. +||+++.|
T Consensus 170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~~-----v~~~~ll~~~~DIvip~ 237 (364)
T 1leh_A 170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFAPC 237 (364)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEEEC
T ss_pred CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EChHHHhccCCcEeecc
Confidence 6899 9999999999999999999999 9998876655333344555556552 34555554 89999977
Q ss_pred ec
Q 014863 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
..
T Consensus 238 a~ 239 (364)
T 1leh_A 238 AL 239 (364)
T ss_dssp SC
T ss_pred ch
Confidence 53
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=73.61 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh---hhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA---EAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~---~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLa 185 (417)
.||||||+|.||..++.++++.-. ....+.+++.. ++..++..+.+.+.|+.. ...|.+|+++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 379999999999999999987500 00002355433 344345556677778742 2578999885 68999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
||+..+.++....+ +.|+-|.
T Consensus 104 tp~~~H~~~~~~al---~aGkhVl 124 (412)
T 4gqa_A 104 SPNHLHYTMAMAAI---AAGKHVY 124 (412)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HcCCCeE
Confidence 99999998776543 3455443
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=71.12 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecC--------------CCcCCHHhhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEEN--------------GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d--------------~~~~~~~Eav 176 (417)
.||||||+|.||..+++.|... .+++++...+.+ ......+..+|+..-. ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999875 135554444332 3333455566642100 0134778888
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
.+.|+|++|+|...+.+..... ++.|+.|++.++
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~---l~aGk~Vi~sap 111 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLY---EKAGVKAIFQGG 111 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHH---HHHTCEEEECTT
T ss_pred cCCCEEEECCCccccHHHHHHH---HHcCCceEeecc
Confidence 8999999999999887766543 445666655543
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.56 E-value=7.7e-05 Score=72.94 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=67.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.+|+|+|. |.||..++++|++. |++++....+..... .-.|+.. ..+++|+.+ ..|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 46788898 99999999999998 887554554421100 1157665 678899888 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i 216 (417)
..+.+++++.... ....+|+++.||..
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 107 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPV 107 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999886653 22335667889864
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=71.44 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=59.5
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhcc--CCeEEEe
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~--ADiViLa 185 (417)
.||||||+|.||. .++..|+.. .+++++...+.+ +..+.+.+ .|... ..+.++++.+ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC 72 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence 5899999999998 577777654 156665444443 44455555 45553 5789999875 8999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+|+..+.++....+ +.|+.|.
T Consensus 73 tp~~~h~~~~~~al---~aGk~Vl 93 (349)
T 3i23_A 73 TPAHTHYDLAKQAI---LAGKSVI 93 (349)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HcCCEEE
Confidence 99999988776543 4566444
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=72.63 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=58.3
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeec
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavp 187 (417)
.||||||+|.||.. ++.+|++. .+.+++...+.+... .+.+.+.+... .+.++++++++ .|+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDIP---VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSCC---EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 88998765 156665344443332 23333333221 25789999875 499999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++....+ +.|+-|.
T Consensus 78 ~~~H~~~~~~al---~aGkhVl 96 (359)
T 3m2t_A 78 PQLHFEMGLLAM---SKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HCCCeEE
Confidence 999988776543 3455443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.1e-05 Score=74.32 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=53.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc--eecCCCcCCHHhhhc-cCCeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETIS-GSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~--~~~d~~~~~~~Eav~-~ADiVi 183 (417)
.++| ++|.|||.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+. ... ..+.+++.+ ++|+||
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~~---~~~~~~~~~~~~DivI 185 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQ---AVSMDSIPLQTYDLVI 185 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEE---EEEGGGCCCSCCSEEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCeE---EeeHHHhccCCCCEEE
Confidence 4678 9999999999999999999998 88899988876555555544321 100 123444434 899999
Q ss_pred EeecchhHHH
Q 014863 184 LLISDAAQAD 193 (417)
Q Consensus 184 Lavpd~a~~~ 193 (417)
.++|.....+
T Consensus 186 n~t~~~~~~~ 195 (272)
T 1p77_A 186 NATSAGLSGG 195 (272)
T ss_dssp ECCCC-----
T ss_pred ECCCCCCCCC
Confidence 9999876543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00024 Score=65.66 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH---hh-hccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---Ea-v~~ADiViLavp 187 (417)
++|.|+|+|.+|..+++.|.+. |+ |++..+. ....+.+. .|+....+...+.+ ++ +.+||.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid~~-~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAEDE-NVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEESCG-GGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEECC-HHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999888 88 7655544 44455554 66543212223332 33 789999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEecc
Q 014863 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~G-aiL~~a~G 213 (417)
+......+...+..+.++ .++..+..
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 876654444444455565 56666654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.53 E-value=6.2e-05 Score=72.86 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=63.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC---ceecCCCcCCHHhhh-ccCCe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETI-SGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~Eav-~~ADi 181 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+ +. ..+.+++- .++|+
T Consensus 117 ~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 117 PLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR-----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE-----EECSGGGTTCCCSE
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee-----EeeHHHhcccCCCE
Confidence 4678 9999999999999999999998 96 88888887666666666544 22 12333332 78999
Q ss_pred EEEeecchhHHHHHHHH-HhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKI-FSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI-~p~Lk~GaiL~~a 211 (417)
||.+||.....+.. .+ ...++++.+|+|.
T Consensus 185 vInaTp~gm~~~~~-~i~~~~l~~~~~V~Dl 214 (272)
T 3pwz_A 185 VVNATSASLTADLP-PLPADVLGEAALAYEL 214 (272)
T ss_dssp EEECSSGGGGTCCC-CCCGGGGTTCSEEEES
T ss_pred EEECCCCCCCCCCC-CCCHHHhCcCCEEEEe
Confidence 99999976542210 00 1235566666644
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=70.66 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=61.4
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecC-CchhHHHHHHcCc-eecCCCcCCHHhhhc--cCCeEEEee
Q 014863 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~-~~~d~~~~~~~Eav~--~ADiViLav 186 (417)
.||||||+| .+|..++.+|+.. +.+.+++...+. .++..+.+.+.|. .. +.+.+|+++ +.|+|++++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~vD~V~i~t 90 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPAV----FDSYEELLESGLVDAVDLTL 90 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCEE----ESCHHHHHHSSCCSEEEECC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 589999999 8999999999764 114565443444 3444455666776 32 678999886 589999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
|+..+.++....+ +.|+-|
T Consensus 91 p~~~H~~~~~~al---~aGkhV 109 (340)
T 1zh8_A 91 PVELNLPFIEKAL---RKGVHV 109 (340)
T ss_dssp CGGGHHHHHHHHH---HTTCEE
T ss_pred CchHHHHHHHHHH---HCCCcE
Confidence 9999988776543 346544
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00036 Score=68.84 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH--Hc-------CceecCCCcCCHHhhhccCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA-------GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~--~~-------G~~~~d~~~~~~~Eav~~AD 180 (417)
++||+|||.|.||.++|..|... |+ +|++.+....+....+. +. ..... ...+. +++++||
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~--~t~d~-~al~~aD 74 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS--GSNTY-DDLAGAD 74 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE--EECCG-GGGTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEE--ECCCH-HHhCCCC
Confidence 37999999999999999999988 87 86555544332211111 11 11110 12466 8899999
Q ss_pred eEEEee--cch-------------------hHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLI--SDA-------------------AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLav--pd~-------------------a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+||+++ |.. ...++.++|.++. |+.+|+++
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 125 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVV 125 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999998 421 2334555666665 66665544
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.52 E-value=8.8e-05 Score=71.01 Aligned_cols=94 Identities=21% Similarity=0.087 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc--eecCCCcCCHHhhh-ccCCeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETI-SGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~--~~~d~~~~~~~Eav-~~ADiVi 183 (417)
.++| +++.|+|.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+. .. + ..+.+++. .++|+||
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~~~-~--~~~~~~~~~~~~DivV 185 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSI-Q--ALSMDELEGHEFDLII 185 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSE-E--ECCSGGGTTCCCSEEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccCCe-e--EecHHHhccCCCCEEE
Confidence 4678 9999999999999999999999 88888888875554555555432 10 0 22333333 5899999
Q ss_pred EeecchhHHHHHHHHH-hcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIF-SCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~-p~Lk~GaiL~~a 211 (417)
.++|.....++ ..+- ..++++.+++++
T Consensus 186 n~t~~~~~~~~-~~i~~~~l~~~~~v~D~ 213 (271)
T 1nyt_A 186 NATSSGISGDI-PAIPSSLIHPGIYCYDM 213 (271)
T ss_dssp ECCSCGGGTCC-CCCCGGGCCTTCEEEES
T ss_pred ECCCCCCCCCC-CCCCHHHcCCCCEEEEe
Confidence 99997654221 0111 124566666543
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=71.38 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=66.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--c-CCeEEEeec
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~-ADiViLavp 187 (417)
.+|+|+|. |.||..++++|++. |++++....+...-. .-.|+.. ..+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 46788898 99999999999998 888554554432100 1257765 578888876 5 999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchh
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i 216 (417)
+..+.+++++.... .-..+|+++.||..
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 108 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPV 108 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 99999999886653 22336677889864
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00029 Score=70.00 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=58.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.||||||+|.||.. ++..|+.. .+++++...+.+.... +.+. +... ..+.+++++ +.|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKV--KRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHH--HHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHH--HhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777664 1556654444433322 2233 4443 578999987 7899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++.... |+.|+.|.
T Consensus 77 ~~~H~~~~~~a---l~aGk~Vl 95 (364)
T 3e82_A 77 NATHAPLARLA---LNAGKHVV 95 (364)
T ss_dssp GGGHHHHHHHH---HHTTCEEE
T ss_pred hHHHHHHHHHH---HHCCCcEE
Confidence 99998877654 34566544
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00034 Score=71.38 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=58.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-HH---HcCc---eecCCCcC----CHHhhhc--c
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR---AAGF---TEENGTLG----DIYETIS--G 178 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-A~---~~G~---~~~d~~~~----~~~Eav~--~ 178 (417)
.||||||+|.||..++.+|+.. .+++++...+.+....+. +. +.|+ .. .. +.+++++ +
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKV----FGNGNDDYKNMLKDKN 91 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEE----ECSSTTTHHHHTTCTT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCce----eccCCCCHHHHhcCCC
Confidence 6899999999999999999864 156665444444433332 22 3453 22 45 8899887 5
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
.|+|++++|+..+.++....+ +.|+.|
T Consensus 92 vD~V~i~tp~~~h~~~~~~al---~aGkhV 118 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAAM---KAGKIV 118 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHHH---HTTCEE
T ss_pred CCEEEEcCCcHHHHHHHHHHH---HCCCeE
Confidence 899999999999988776543 345543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0003 Score=69.81 Aligned_cols=86 Identities=8% Similarity=-0.005 Sum_probs=61.3
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeec
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavp 187 (417)
.||||||+|.+|. .++..++.. +.+++...+.+ ++..+.+.+.|... ...+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999994 567777666 77765444443 34455667777432 25789999875 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++....+ +.|+-|.
T Consensus 98 ~~~H~~~~~~al---~aGkhVl 116 (361)
T 3u3x_A 98 SSERAELAIRAM---QHGKDVL 116 (361)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCeEE
Confidence 999988776543 4565443
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.6e-05 Score=73.35 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=56.5
Q ss_pred CEEEEEcccchHHH-HHHHH-HhhhhhhcCCceEE-EEecCCchhHHHHHH-cCceecCCCcCCHHhhhcc--CCeEEEe
Q 014863 112 NQIGVIGWGSQGPA-QAQNL-RDSLAEAKSDIVVK-VGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~L-r~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~-~G~~~~d~~~~~~~Eav~~--ADiViLa 185 (417)
.||||||+|.||.. ++.++ ... .+++++ +.++...+. +.+.+ .|... ..++++++.+ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~-~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPE-EQAPIYSHIHF----TSDLDEVLNDPDVKLVVVC 72 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGG-GGSGGGTTCEE----ESCTHHHHTCTTEEEEEEC
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHH-HHHHhcCCCce----ECCHHHHhcCCCCCEEEEc
Confidence 68999999999986 45524 332 156665 344433332 33323 34443 5789999876 8999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|+..+.++.... ++.|+.|..
T Consensus 73 tp~~~h~~~~~~a---l~aGk~Vl~ 94 (345)
T 3f4l_A 73 THADSHFEYAKRA---LEAGKNVLV 94 (345)
T ss_dssp SCGGGHHHHHHHH---HHTTCEEEE
T ss_pred CChHHHHHHHHHH---HHcCCcEEE
Confidence 9999998877654 345665543
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00081 Score=65.92 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc---hhHHHHHHc--CceecCCCcCCHHhhhccCCeEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~---~s~~~A~~~--G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
++||+|||.|+||.++|..|... |+ ++++.+.... ...+...-. .+.. ..+. +++++||+||
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVI 82 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEE
Confidence 48999999999999999999888 77 7777665432 222222211 1221 2566 7799999999
Q ss_pred Eeecch---------------hHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDA---------------AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~---------------a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.... ...++++++..+. |+.+|+++
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA 124 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 997211 1234555666655 66665443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0003 Score=69.60 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.||||||+|.||.. ++..|+.. .+++++...+.+.. +.+.+. +... ..+.+++++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 77777654 15666544444332 234444 4443 578999987 7899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++....+ +.|+-|.
T Consensus 75 ~~~H~~~~~~al---~aGkhVl 93 (358)
T 3gdo_A 75 SGLHYEHTMACI---QAGKHVV 93 (358)
T ss_dssp TTTHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCeEE
Confidence 999988776543 4566443
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00028 Score=69.43 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.||||||+|.||.. ++..|+.. .+++++...+.+....+ +...+... ..+.++++.+ .|+|++++|+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~-~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH-ADWPAIPV----VSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH-TTCSSCCE----ESCHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH-hhCCCCce----ECCHHHHhcCCCCCEEEEeCCh
Confidence 58999999999997 78888764 14566544444332222 11123332 5789999875 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++.... |+.|+-|.
T Consensus 78 ~~H~~~~~~a---l~aGkhV~ 95 (352)
T 3kux_A 78 DTHFPLAQSA---LAAGKHVV 95 (352)
T ss_dssp TTHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HHCCCcEE
Confidence 9998877654 34566443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.001 Score=65.05 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|.||.+++..|... |+ +|++.+....+....+.+ .+ .... ...+. +++++||+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT--GTNNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE--EESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEE--ECCCH-HHHCCCCE
Confidence 6999999999999999999888 86 855554443322221211 11 1110 02456 78999999
Q ss_pred EEEeec
Q 014863 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||++++
T Consensus 74 Vi~a~g 79 (309)
T 1ur5_A 74 IVVTSG 79 (309)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999984
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0002 Score=69.42 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=62.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
| +++.|||.|-+|.+++..|.+. |.+|.+.+|+.++..+.+ +.|+.. .+.+++ .++|+||.+||..
T Consensus 118 ~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp~G 183 (269)
T 3phh_A 118 Y-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATSAS 183 (269)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCTTC
T ss_pred C-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEcccCC
Confidence 7 9999999999999999999998 888999999877776777 667553 233443 3899999999965
Q ss_pred hHHH-HHH-H-HHhcCCCCcEEEEe
Q 014863 190 AQAD-NYE-K-IFSCMKPNSILGLS 211 (417)
Q Consensus 190 a~~~-Vl~-e-I~p~Lk~GaiL~~a 211 (417)
...+ .++ + +...++++.+|+|.
T Consensus 184 m~~~~~l~~~~l~~~l~~~~~v~D~ 208 (269)
T 3phh_A 184 LHNELPLNKEVLKGYFKEGKLAYDL 208 (269)
T ss_dssp CCCSCSSCHHHHHHHHHHCSEEEES
T ss_pred CCCCCCCChHHHHhhCCCCCEEEEe
Confidence 3321 111 1 22234556666644
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00031 Score=72.86 Aligned_cols=83 Identities=7% Similarity=0.098 Sum_probs=59.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViL 184 (417)
.||||||+ |.||..++.+|+.. ..+++++.. ++...+..+.+.+.|+.. ...+.+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999999763 015665533 443334445666677630 011678999885 6999999
Q ss_pred eecchhHHHHHHHHH
Q 014863 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~a~~~Vl~eI~ 199 (417)
++|+..+.++....+
T Consensus 115 ~tp~~~H~~~~~~al 129 (479)
T 2nvw_A 115 SVKVPEHYEVVKNIL 129 (479)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHH
Confidence 999999988776543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00025 Score=70.17 Aligned_cols=84 Identities=10% Similarity=0.113 Sum_probs=58.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhcc--CCeEEEeec
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~--ADiViLavp 187 (417)
.||||||+|.||.. ++..|+.. .+++++...+.+... .+.+. +... +.+.+|++++ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777664 156665444443332 23344 4443 5788999876 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++....+ +.|+-|.
T Consensus 75 ~~~H~~~~~~al---~aGkhVl 93 (362)
T 3fhl_A 75 DNTHYEYAGMAL---EAGKNVV 93 (362)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCeEE
Confidence 999988776543 3465443
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00028 Score=71.99 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=58.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViL 184 (417)
.||||||+ |.||..++.+|++. ..+++++...+.+ .+..+.+.+.|+.. .....+.++++. +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999999763 0156654444443 34445566667630 001578999886 6899999
Q ss_pred eecchhHHHHHHHHH
Q 014863 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~a~~~Vl~eI~ 199 (417)
++|+..+.++....+
T Consensus 96 ~tp~~~H~~~~~~al 110 (438)
T 3btv_A 96 AIQVASHYEVVMPLL 110 (438)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHH
Confidence 999999988776543
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=68.71 Aligned_cols=81 Identities=12% Similarity=0.275 Sum_probs=53.0
Q ss_pred CEEEEEcccchHHHHHHH--HHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~--Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++|+|||+|++|.++++. .... |++++...+.+...... ...|+.+. ...++++.+++.|+|++++|..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3333 77776666654432221 11343321 1456788887679999999999
Q ss_pred hHHHHHHHHHhc
Q 014863 190 AQADNYEKIFSC 201 (417)
Q Consensus 190 a~~~Vl~eI~p~ 201 (417)
.+.++.+.+...
T Consensus 157 ~~~ei~~~l~~a 168 (215)
T 2vt3_A 157 AAQSITDRLVAL 168 (215)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHc
Confidence 888888776543
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00036 Score=69.24 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=63.7
Q ss_pred CEEEEEc-ccchHHH-HH----HHHHhhhhhhcCC-ce----------EEEEecCCchhHHHHHHcCceecCCCcCCHHh
Q 014863 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG-~G~mG~A-iA----~~Lr~s~~~~~~G-~~----------Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E 174 (417)
.|||||| +|.||.. ++ ..+++. + .. +.+.++..++..+.+.+.|+.. ...+.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4899999 9999998 78 778776 3 22 1256666666667778888742 1578999
Q ss_pred hhcc--CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 175 av~~--ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
++++ .|+|++++|+..+.++.... |+.|+.|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQA---INAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHH---HTTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHH---HHCCCeEE
Confidence 9865 89999999999998877654 44566554
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00037 Score=68.22 Aligned_cols=86 Identities=9% Similarity=0.003 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hh---HHHHHHcCceecCCCcCCHHhhhcc--CCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RS---FAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s---~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViL 184 (417)
.||||||+|.+|..++..| .. +.+++...+.+. +. .+.+.+.|+.. ....|.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6999999999999888877 44 677654444332 21 22233346521 126789998864 899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEE
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
++|+..+.++....+ +.|+-|.
T Consensus 74 ~tp~~~H~~~~~~al---~aGkhVl 95 (337)
T 3ip3_A 74 NTVFSLNGKILLEAL---ERKIHAF 95 (337)
T ss_dssp CSSHHHHHHHHHHHH---HTTCEEE
T ss_pred eCCcchHHHHHHHHH---HCCCcEE
Confidence 999999988776543 3455443
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00082 Score=66.17 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=62.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-ch-hHHHHHHcCceecCCCcCCHHhhh-----ccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SR-SFAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~-s~~~A~~~G~~~~d~~~~~~~Eav-----~~ADiViL 184 (417)
.||||||+|.+|..+++.|.+.. .+.+++...+.+ ++ ..+.+.+.|.... ..+.++++ ++.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999995520 155554444443 33 3566777887521 23556664 45899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
++|+..+.++....... ++|+.|++...
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 99998888877655432 24777766443
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=64.77 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHH----H---cCc--eecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----A---AGF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~----~---~G~--~~~d~~~~~~~Eav~~AD 180 (417)
|||+|||.|++|.++|..|... |+ ++.+.++...+....+. . .+. ... ...+ .+++++||
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV--GGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE--EESC-GGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEE--EeCC-HHHhCCCC
Confidence 6899999999999999999988 77 77776665333211111 1 111 110 0235 78999999
Q ss_pred eEEEeec
Q 014863 181 LVLLLIS 187 (417)
Q Consensus 181 iViLavp 187 (417)
+||++..
T Consensus 72 iVViaag 78 (294)
T 1oju_A 72 IIVVTAG 78 (294)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999974
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=67.84 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH---Hhh-hccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~Ea-v~~ADiViLavp 187 (417)
++|.|||+|.+|..+++.|++. |++|++.++. ....+.+.+.|+....+...+. .++ +.+||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId~d-~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLDHD-PDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEECC-HHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 9988766544 5556777778874321112232 233 688999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEec
Q 014863 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~G-aiL~~a~ 212 (417)
+......+-.....+.|+ .+|.-+.
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 876654444444445455 4555443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=71.70 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=63.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
.||+|||+| +|...+..+++. ..+++++ |..+..+++.+.|.+.|+.. ..|.++++.+.|+|+++||+..
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 589999999 799888887664 1145654 34555567778899999875 6799999999999999999987
Q ss_pred HHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 191 QADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 191 ~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
+... ++-....|+.|+-|..=.-+
T Consensus 79 h~~~~~~~a~~al~aGkhVl~EKPl 103 (372)
T 4gmf_A 79 AGGAGTQLARHFLARGVHVIQEHPL 103 (372)
T ss_dssp TTSHHHHHHHHHHHTTCEEEEESCC
T ss_pred cchhHHHHHHHHHHcCCcEEEecCC
Confidence 7321 22223345567755433333
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00023 Score=68.85 Aligned_cols=83 Identities=10% Similarity=0.155 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~ 189 (417)
.||||||+|.||..++.+|.... ...+.+++...+.+. .+...|+. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence 68999999999999999986520 001455543333221 12234554 468899886 689999999999
Q ss_pred hHHHHHHHHHhcCCCCcEE
Q 014863 190 AQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL 208 (417)
.+.++....+ +.|+.|
T Consensus 77 ~H~~~~~~al---~aGkhV 92 (294)
T 1lc0_A 77 SHEDYIRQFL---QAGKHV 92 (294)
T ss_dssp GHHHHHHHHH---HTTCEE
T ss_pred hHHHHHHHHH---HCCCcE
Confidence 9988776543 456643
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0013 Score=65.24 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=47.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhH----HHHHH-----cCceecCCCcCCHHhh
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF----AEARA-----AGFTEENGTLGDIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~----~~A~~-----~G~~~~d~~~~~~~Ea 175 (417)
..++. +||+|||.|.+|.++|..|... |+ ++.+.+....+.. +.... ...... ...+. ++
T Consensus 3 ~~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~a 72 (324)
T 3gvi_A 3 GSMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-AA 72 (324)
T ss_dssp ---CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-GG
T ss_pred CCCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-HH
Confidence 44555 8999999999999999999988 77 8777766544321 11111 111110 02344 88
Q ss_pred hccCCeEEEeec
Q 014863 176 ISGSDLVLLLIS 187 (417)
Q Consensus 176 v~~ADiViLavp 187 (417)
+++||+||++..
T Consensus 73 ~~~aDiVIiaag 84 (324)
T 3gvi_A 73 IEGADVVIVTAG 84 (324)
T ss_dssp GTTCSEEEECCS
T ss_pred HCCCCEEEEccC
Confidence 999999999974
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00092 Score=65.74 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=54.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cCc------eecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGF------TEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~------~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ .+. .. .. +..+++++||+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i---~~-~~~~a~~~aDv 77 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL---YA-GDYSDVKDCDV 77 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEE---C---CGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEE---EE-CCHHHhCCCCE
Confidence 6899999999999999999888 76 676665443322222222 221 11 02 23678999999
Q ss_pred EEEeecchh----------------HHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a----------------~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
||++++... ..++.+.|.++ .|+.+|+..
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 122 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 122 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 999987433 23344456655 577766554
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00029 Score=66.19 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
++++|||+|++|.++++.+... ..|++++...+.++. ....+.-.|+.+.+ ..++++.++ +.|++++|+|.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHD----RNKMQISMAFDLDSNDLVGKTTEDGIPVYG--ISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCT----TSSEEEEEEEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcc----cCCeEEEEEEeCCchhccCceeECCeEEeC--HHHHHHHHHHcCCCEEEEecCc
Confidence 6899999999999999874211 117777766666554 33221124655311 356777776 49999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEecc
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~P 237 (417)
....++.+.+...=- ..++-|++- .+.+|+++.|--++.
T Consensus 159 ~~aq~v~d~lv~~GI-k~I~nFap~---------~l~vp~~v~v~~vdl 197 (212)
T 3keo_A 159 TEAQEVADILVKAGI-KGILSFSPV---------HLTLPKDIIVQYVDL 197 (212)
T ss_dssp GGHHHHHHHHHHHTC-CEEEECSSS---------CCCCCTTSEEEECCH
T ss_pred hhHHHHHHHHHHcCC-CEEEEcCCc---------ccCCCCCcEEEEeCc
Confidence 888888877654321 235665552 235677777766655
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00065 Score=67.43 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=53.7
Q ss_pred cccCCC-CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCe
Q 014863 106 DAFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~-kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADi 181 (417)
+.++|- |||.|||+|.+|..++..|.+. ++|.++++. .+..+.+.+..-.. .-.+.+ +.++++++|+
T Consensus 10 ~~~~g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~-~~~~~~~~~~~~~~-~~d~~d~~~l~~~~~~~Dv 80 (365)
T 3abi_A 10 HHIEGRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVN-NENLEKVKEFATPL-KVDASNFDKLVEVMKEFEL 80 (365)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESC-HHHHHHHTTTSEEE-ECCTTCHHHHHHHHTTCSE
T ss_pred ccccCCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcC-HHHHHHHhccCCcE-EEecCCHHHHHHHHhCCCE
Confidence 344552 6899999999999999998654 577777765 33344443322111 000223 4567899999
Q ss_pred EEEeecchhHHHHHHHH
Q 014863 182 VLLLISDAAQADNYEKI 198 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI 198 (417)
||.++|+..+..+.+..
T Consensus 81 Vi~~~p~~~~~~v~~~~ 97 (365)
T 3abi_A 81 VIGALPGFLGFKSIKAA 97 (365)
T ss_dssp EEECCCGGGHHHHHHHH
T ss_pred EEEecCCcccchHHHHH
Confidence 99999999887777643
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0019 Score=63.92 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=45.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH--HcC-------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~--~~G-------~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|.||.++|..|... |+ ++.+.+....+....+. ... ... ...+..+++++||+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~~aDv 76 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLENSDV 76 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHCCCCE
Confidence 8999999999999999999988 76 77776665443222221 111 111 01123578999999
Q ss_pred EEEeec
Q 014863 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||++..
T Consensus 77 VIi~ag 82 (321)
T 3p7m_A 77 VIVTAG 82 (321)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 999964
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=71.43 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=65.3
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC----c--CCHHhhhccC
Q 014863 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~----~--~~~~Eav~~A 179 (417)
.++| +++.|||.|.| |..+|+.|... |..|.+.+|+..+.++.+.+.+......+ + .++++.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 6889 99999999976 99999999988 88888887764333333333332100000 1 3578899999
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+||.+|+-... ++. ...+++|.+|++++-
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999985321 011 133688988887763
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00042 Score=69.08 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=66.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee---cCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~---~d~~~~~~~Eav~~ADiVi 183 (417)
.+++ ++|.|||.|.+|.+.++.++.. |.+|++.+++.. ..+.+.+.|... .+....+..+.++++|+||
T Consensus 164 ~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 164 GVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVE-RLSYLETLFGSRVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp TBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEE
Confidence 4777 9999999999999999999998 988887777643 344444443210 0000123456778999999
Q ss_pred EeecchhH--HH-HHHHHHhcCCCCcEEEEec
Q 014863 184 LLISDAAQ--AD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~a~--~~-Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.+++.... .. +.++..+.|++|.+|++.+
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99975331 11 1345567789999888764
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0006 Score=66.23 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=63.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC-----ceecCCCcCCHHhhhccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~Eav~~AD 180 (417)
.++| +++.|+|.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+ +........+..++++++|
T Consensus 124 ~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~D 196 (283)
T 3jyo_A 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_dssp TCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSS
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCC
Confidence 5778 9999999999999999999998 98 68888887555444444322 1100000236778889999
Q ss_pred eEEEeecchhHHHHHHHH-HhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKI-FSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI-~p~Lk~GaiL~~a 211 (417)
+||.+||.......-..+ ...++++.+|.|.
T Consensus 197 iVInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dl 228 (283)
T 3jyo_A 197 GVVNATPMGMPAHPGTAFDVSCLTKDHWVGDV 228 (283)
T ss_dssp EEEECSSTTSTTSCSCSSCGGGCCTTCEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCHHHhCCCCEEEEe
Confidence 999999965432100001 2235566665544
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00091 Score=65.62 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=58.2
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeec
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~---ADiViLavp 187 (417)
.||||||+|.||. .++..|+.. .+.+++...+.+.+ ..|+.. ..+.++++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 5899999999998 789998875 15565544444332 246664 6789998865 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++....+ +.|+-|.
T Consensus 91 ~~~H~~~~~~al---~aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKAL---VAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCcEE
Confidence 999988776543 3566444
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=64.50 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=46.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH-------c--CceecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------A--GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~--G~~~~d~~~~~~~Eav~~AD 180 (417)
|||+|||.|.||.++|..|... |+ ++++.+....+....+.+ . .... ...+..+++++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 6899999999999999999988 76 776666554332212111 0 1111 0124568899999
Q ss_pred eEEEeecc
Q 014863 181 LVLLLISD 188 (417)
Q Consensus 181 iViLavpd 188 (417)
+||++.+.
T Consensus 72 vVii~ag~ 79 (314)
T 3nep_X 72 VCIITAGL 79 (314)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999753
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0016 Score=64.64 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHH--HHcCceec--C-CCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTEE--N-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A--~~~G~~~~--d-~~~~~~~Eav~~ADiViL 184 (417)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+ ...++... + ....+..+++++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999998 76 6666555432222212 12221100 0 001233568999999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 974
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0024 Score=62.63 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=44.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cCceec--C-CCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE--N-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~--d-~~~~~~~Eav~~ADiViL 184 (417)
+||+|||.|++|.+++..|... ++ ++.+.+....+....+.+ .+.... + ....+..+++++||+||+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi 80 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVI 80 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEE
Confidence 6999999999999999999887 65 565544332222111221 111000 0 001144678999999999
Q ss_pred eecc
Q 014863 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+++.
T Consensus 81 ~ag~ 84 (317)
T 3d0o_A 81 CAGA 84 (317)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9863
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00091 Score=65.21 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=59.4
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++| +++.|||.|. +|..+|+.|... |..|.+..+. ..++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999985 899999999998 9888877542 236889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+-.. ++. ..++|+|++|++++
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8532 222 24579999998775
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0011 Score=66.75 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=50.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViLa 185 (417)
.|+| ++|+|+|+|++|...|+.|+.. |.+|++.+.. ....+.+.+.|... .+.+++.. +||+++.|
T Consensus 172 ~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~~-~~~~~~a~~~ga~~-----v~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 172 SLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTD-TERVAHAVALGHTA-----VALEDVLSTPCDVFAPC 238 (355)
T ss_dssp CSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEEC
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-ccHHHHHHhcCCEE-----eChHHhhcCccceecHh
Confidence 6899 9999999999999999999988 9998855443 33245566667653 35667776 89998743
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.002 Score=63.10 Aligned_cols=89 Identities=25% Similarity=0.221 Sum_probs=55.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc---------CceecCCCcCCHHhhhccCCeE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~---------G~~~~d~~~~~~~Eav~~ADiV 182 (417)
||+|||.|+||.+++..|... ++ ++++.+....+....+.+. ..... ...+. +++++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 699999999999999999887 76 5766665533222212211 21110 01455 789999999
Q ss_pred EEeecchh----------------HHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a----------------~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|++.+... ..++.+++..+- |+.++++.
T Consensus 72 i~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 115 (308)
T 2d4a_B 72 LVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVIT 115 (308)
T ss_dssp EECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 99966433 334555565554 66654433
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=64.46 Aligned_cols=69 Identities=25% Similarity=0.229 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC--ceecC--CCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEEN--GTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~d--~~~~~~~Eav~~ADiVi 183 (417)
+||+|||.|.||.++|..|... |+ ++++.+....+....+.+ ++ +.... ....++++ +++||+||
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVI 94 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVV 94 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEE
Confidence 8999999999999999999988 86 666655543222222211 11 10000 01235554 89999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++..
T Consensus 95 itaG 98 (330)
T 3ldh_A 95 ITAG 98 (330)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 9853
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0004 Score=67.69 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+... ..+..+ + ++|+||.+
T Consensus 119 ~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIna 185 (282)
T 3fbt_A 119 EIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIINC 185 (282)
T ss_dssp CCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEEC
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEEC
Confidence 3678 9999999999999999999998 98 88888887555444443322221 223334 4 89999999
Q ss_pred ecchh
Q 014863 186 ISDAA 190 (417)
Q Consensus 186 vpd~a 190 (417)
||...
T Consensus 186 Tp~Gm 190 (282)
T 3fbt_A 186 TPKGM 190 (282)
T ss_dssp SSTTS
T ss_pred CccCc
Confidence 98643
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0008 Score=65.22 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=94.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHH----HcCceecCCCcCCHHhhhccCCeE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~----~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
|+||+|+| +|.||..+++.+.+. .+++++...+...... +... ..|+.. ..++++++.++|+|
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVV 77 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYL 77 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEE
Confidence 37999999 999999999998765 1566655444422110 0000 113432 46889999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHH--HHHhhccccc--CC
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~e~~--G~ 257 (417)
|-+++|....+.+..... .|. +|+=..|++-..++. ....-+.+. +...||..--+.- .+-+.-.... ++
T Consensus 78 IDfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~~~-L~~aa~~~~-vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~ 152 (272)
T 4f3y_A 78 IDFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQKAQ-LRAAGEKIA-LVFSANMSVGVNVTMKLLEFAAKQFAQGY 152 (272)
T ss_dssp EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHTTTSE-EEECSCCCHHHHHHHHHHHHHHHHTSSSC
T ss_pred EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhccCC-EEEECCCCHHHHHHHHHHHHHHHhcCcCC
Confidence 999999988877766543 344 444456876432211 001123444 5788987654410 0000000000 12
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014863 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~q----d-~sgea~e~a~al~~aiG~ 286 (417)
-+- ++-.|. | +||.++.+++.+....|.
T Consensus 153 die-i~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (272)
T 4f3y_A 153 DIE-IIEAHHRHKVDAPSGTALMMGETIAAATGR 185 (272)
T ss_dssp EEE-EEEEECTTCCSSSCHHHHHHHHHHHHTTTC
T ss_pred CEE-EEEecCCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 233 233444 2 589999999999988875
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=65.58 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=59.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceec-----------CC--Cc-CCHHhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEE-----------NG--TL-GDIYET 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~-----------d~--~~-~~~~Ea 175 (417)
|.||||+|+|.+|..+++.|.+. .+++++...+.. ..+...+...|+..- +. .+ .+.++.
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 46899999999999999999764 145654433332 223333443321100 00 01 245666
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
..++|+|+.|+|.....+..+... +.|+.|++.++-
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHH---HHTCCEEECTTS
T ss_pred hcCCCEEEECCCchhhHHHHHHHH---HcCCEEEEecCC
Confidence 789999999999998887776543 345556666553
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0011 Score=68.63 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=48.2
Q ss_pred CEEEEEcccch--HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---------CceecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~m--G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||.|+| |.+++..|...- .-.| +|++.+.. ....+..... -+.. +.|.++++++||
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~--~~~g-eV~L~Di~-~e~le~~~~~~~~l~~~~~~I~~----TtD~~eAl~dAD 77 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDE--RMSG-TVALYDLD-FEAAQKNEVIGNHSGNGRWRYEA----VSTLKKALSAAD 77 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCS--SCCE-EEEEECSS-HHHHHHHHHHHTTSTTSCEEEEE----ESSHHHHHTTCS
T ss_pred CEEEEECCChhHhHHHHHHHHHhcc--ccCC-eEEEEeCC-HHHHHHHHHHHHHHhccCCeEEE----ECCHHHHhcCCC
Confidence 69999999998 578888887630 0015 77766554 3322222211 1222 468899999999
Q ss_pred eEEEeecchhHH
Q 014863 181 LVLLLISDAAQA 192 (417)
Q Consensus 181 iViLavpd~a~~ 192 (417)
+||+++++....
T Consensus 78 fVI~airvG~~~ 89 (450)
T 3fef_A 78 IVIISILPGSLD 89 (450)
T ss_dssp EEEECCCSSCHH
T ss_pred EEEeccccCCcc
Confidence 999999876443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0024 Score=62.83 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ .. +.. ..+..+++++||+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDADL 75 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 6999999999999999999887 65 666655532222222222 11 111 1244678999999
Q ss_pred EEEeecch
Q 014863 182 VLLLISDA 189 (417)
Q Consensus 182 ViLavpd~ 189 (417)
||++.+..
T Consensus 76 Vii~ag~~ 83 (318)
T 1ez4_A 76 VVITAGAP 83 (318)
T ss_dssp EEECCCC-
T ss_pred EEECCCCC
Confidence 99998643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0025 Score=62.97 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=45.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ .. +.. ..+..+++++||+
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 79 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGGGCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 7999999999999999999887 65 666655532222222222 22 111 1245678999999
Q ss_pred EEEeecch
Q 014863 182 VLLLISDA 189 (417)
Q Consensus 182 ViLavpd~ 189 (417)
||++.+..
T Consensus 80 Vii~ag~~ 87 (326)
T 2zqz_A 80 VVITAGAP 87 (326)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998643
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0041 Score=61.88 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=60.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCC-------------CcCCHHhhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENG-------------TLGDIYETI 176 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~-------------~~~~~~Eav 176 (417)
|.||||+|+|.||..+++.|.+. .+++++...+.. ......+...|+..... ...+.+++.
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~ 75 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI 75 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhh
Confidence 35899999999999999999765 145654444432 33345555556542100 011334555
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+++|+|+.|+|.....+..+... +.|..+++.++
T Consensus 76 ~~vDvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa 109 (340)
T 1b7g_O 76 KTSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (340)
T ss_dssp HHCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred cCCCEEEECCCCchhHHHHHHHH---HcCCeEEEeCC
Confidence 68999999999998887775443 34655555443
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0012 Score=63.73 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
.+ ++|.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+... ..+.. +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~~--~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhhh--cccCCEEEECCC
Confidence 46 8999999999999999999998 87 78899988666666776666432 11222 468999999999
Q ss_pred chhH
Q 014863 188 DAAQ 191 (417)
Q Consensus 188 d~a~ 191 (417)
....
T Consensus 185 ~gm~ 188 (271)
T 1npy_A 185 IGMK 188 (271)
T ss_dssp TTCT
T ss_pred CCcc
Confidence 7653
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=65.28 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH--hhhccCCeE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~--Eav~~ADiV 182 (417)
..++| +++.|||.|. +|.++|+.|... |..|.+..+.. .+++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T-------------------~~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGT-------------------STEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTS-------------------CHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCC-------------------CCchhhhhhccCCEE
Confidence 46899 9999999887 799999999998 98888876531 1344 789999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|.+++-.. ++. ..++|+|++|++++
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvg 239 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVG 239 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEe
Confidence 99999532 222 24579999998775
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0017 Score=63.54 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.|. .|..+|+.|... |..|.+..+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 46899 9999999987 699999999998 8888776542 1367889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-.. ++. ..++|+|++|++++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEec
Confidence 998422 222 24579999998775
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0018 Score=63.39 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=60.0
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..++| +++.|||.|. .|..+|+.|... |..|.+..+. ..++++.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 46899 9999999987 699999999998 8888876542 1367889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-.. ++. ..++|+|++|++++
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVg 232 (285)
T 3p2o_A 210 AAGCVN---LLR--SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSSCTT---CBC--GGGSCTTEEEEECC
T ss_pred CCCCCC---cCC--HHHcCCCeEEEEec
Confidence 998422 222 24579999998875
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0023 Score=63.50 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=57.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhh---hhhhcCCceEEEEecCCchh-----HH--HHHHcC-ceecCCCcC--CHHhhh
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRS-----FA--EARAAG-FTEENGTLG--DIYETI 176 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s---~~~~~~G~~Vivg~r~~~~s-----~~--~A~~~G-~~~~d~~~~--~~~Eav 176 (417)
||.||+|||+|.+|..+++.|.+. +...|.+++++...+.+... .. .+...+ ... .. +.++++
T Consensus 1 ~mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~----~~~~d~~~ll 76 (327)
T 3do5_A 1 GMIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGML----RDDAKAIEVV 76 (327)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSC----SBCCCHHHHH
T ss_pred CcEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccc----cCCCCHHHHh
Confidence 367999999999999999999764 11222366654443332111 11 111111 111 23 788887
Q ss_pred c--cCCeEEEeecchhH-HHHHHHHHhcCCCCcEEEEe
Q 014863 177 S--GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 ~--~ADiViLavpd~a~-~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+ +.|+|+.++|+..+ .+.++-+...|+.|+.|+..
T Consensus 77 ~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 77 RSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp HHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred cCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 5 58999999999876 22333345567788876644
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0039 Score=61.84 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+.+ .. ... ..+..+++++||+
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i----~~~~~~a~~~aDi 79 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEE----EECcHHHhcCCCE
Confidence 8999999999999999999988 76 666655543222222211 11 111 2234578999999
Q ss_pred EEEeec
Q 014863 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||++..
T Consensus 80 Vvi~ag 85 (326)
T 3vku_A 80 VVITAG 85 (326)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0027 Score=65.88 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiV 182 (417)
..+++ ++|.|||.|.+|.+++..|.+. .|.+|.+.+|+.++..+.+...++......+. +..++++++|+|
T Consensus 19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 45666 8999999999999999999875 04688888887544444443334321000122 345677899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|.++|+..+..+.... +++|..+.+.
T Consensus 93 In~tp~~~~~~v~~a~---l~~g~~vvd~ 118 (467)
T 2axq_A 93 ISLIPYTFHPNVVKSA---IRTKTDVVTS 118 (467)
T ss_dssp EECSCGGGHHHHHHHH---HHHTCEEEEC
T ss_pred EECCchhhhHHHHHHH---HhcCCEEEEe
Confidence 9999988665554332 2344544444
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0024 Score=62.59 Aligned_cols=67 Identities=21% Similarity=0.171 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC------ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ .. .... . +..+++++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~---~-~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVW---A-GSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEE---E-CCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEE---E-CCHHHhCCCCE
Confidence 6899999999999999999887 53 566655543222222322 11 1110 2 33678999999
Q ss_pred EEEeecc
Q 014863 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
||++.+.
T Consensus 71 Vii~ag~ 77 (310)
T 2xxj_A 71 VVLAAGV 77 (310)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998863
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=62.79 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--chhHHHHHH----c-----CceecCCCcCCHHhhhccC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFAEARA----A-----GFTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~--~~s~~~A~~----~-----G~~~~d~~~~~~~Eav~~A 179 (417)
+||+|||.|.||.++|..|... |+ +|++.++.. ......+.+ . .... ...+..+++++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i---~~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI---IGTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCE---EEESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEE---EEcCCHHHhCCC
Confidence 7999999999999999999998 88 877766652 111111111 0 1111 012235789999
Q ss_pred CeEEEee
Q 014863 180 DLVLLLI 186 (417)
Q Consensus 180 DiViLav 186 (417)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999997
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=65.47 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcC---CHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~---~~~Eav~~ADiViLavp 187 (417)
++|.|+|.|.+|.+++..|.+. |.+|++.+|..++..+.+...+ +......+. +..++++++|+|+.++|
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 8999999999999999999988 8888888776433322222222 211000122 34467889999999999
Q ss_pred chhHHHHH
Q 014863 188 DAAQADNY 195 (417)
Q Consensus 188 d~a~~~Vl 195 (417)
...+..+.
T Consensus 78 ~~~~~~i~ 85 (450)
T 1ff9_A 78 YTFHATVI 85 (450)
T ss_dssp --CHHHHH
T ss_pred cccchHHH
Confidence 87665543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0023 Score=64.74 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---ceEEEEecCCchhHHHHHHcC------ceecCCCcC---CHHhhhcc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FTEENGTLG---DIYETISG 178 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~Vivg~r~~~~s~~~A~~~G------~~~~d~~~~---~~~Eav~~ 178 (417)
|+||+|||.|.+|.++++.|.+. | .+|++..|+.++..+.+.+.+ +......+. +.++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 68999999999999999999987 7 278888776554444443321 211000022 34566777
Q ss_pred --CCeEEEeecchhHHHHHHH
Q 014863 179 --SDLVLLLISDAAQADNYEK 197 (417)
Q Consensus 179 --ADiViLavpd~a~~~Vl~e 197 (417)
+|+||.++|+.....+.+.
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a 95 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEA 95 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHH
T ss_pred hCCCEEEECCCcccChHHHHH
Confidence 8999999999877666654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0025 Score=62.39 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.|. .|.++|+-|... |..|.+..+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 45889 9999999886 799999999988 8888876532 1367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-.. ++. ..++|+|++|++++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVG 233 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEec
Confidence 998422 222 24579999998875
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0074 Score=60.22 Aligned_cols=92 Identities=21% Similarity=0.142 Sum_probs=58.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHH--------------------HcCceecCCCcC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEAR--------------------AAGFTEENGTLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~--------------------~~G~~~~d~~~~ 170 (417)
.||||+|+|.+|..+++.|... .+++++...+..... ...++ ..++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5999999999999999998765 135654433322111 11111 222222 12
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++|+|+.|+|.....+..+ ..+++.|+.|+++++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34455578999999999877666554 4678889877776653
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0064 Score=59.58 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=45.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC--ceEEEEecCCchhHHHHHH--cCcee--cCCC--cCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTE--ENGT--LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G--~~Vivg~r~~~~s~~~A~~--~G~~~--~d~~--~~~~~Eav~~ADiV 182 (417)
+||+|||. |.+|.+++..|... | .++++.+... ....+.+ .+... .... ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 58999998 99999999999877 6 4666666543 2222222 22110 0000 13577899999999
Q ss_pred EEeec
Q 014863 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99874
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.003 Score=62.43 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=61.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC---CchhHHHHHHc----CceecCCCcCC---HHhh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGD---IYET 175 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~d~~~~~---~~Ea 175 (417)
.++| +++.|+|.|-+|.+++..|.+. |. +|.+.+|+ .++..+.+.+. +....-....+ ..+.
T Consensus 151 ~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (315)
T 3tnl_A 151 DIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKE 223 (315)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhh
Confidence 4678 9999999999999999999998 98 88888887 34433443332 21110000222 3456
Q ss_pred hccCCeEEEeecchhHHH----HHHHHHhcCCCCcEEEEe
Q 014863 176 ISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~----Vl~eI~p~Lk~GaiL~~a 211 (417)
+.++|+||.+||...... .+. ....++++.+|.|.
T Consensus 224 l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dl 262 (315)
T 3tnl_A 224 IAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDV 262 (315)
T ss_dssp HHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEES
T ss_pred hcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEe
Confidence 789999999999654321 010 12235666666644
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0026 Score=62.83 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=54.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC---CchhHHHHHHc----CceecCCCcCCH---Hhh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YET 175 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~d~~~~~~---~Ea 175 (417)
.++| +++.|+|.|-+|.+++..|.+. |. +|.+.+|+ .++..+.+.+. +....-....+. .+.
T Consensus 145 ~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~ 217 (312)
T 3t4e_A 145 DMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEA 217 (312)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhh
Confidence 4678 9999999999999999999998 98 78888887 34444444332 221100002233 566
Q ss_pred hccCCeEEEeecchh
Q 014863 176 ISGSDLVLLLISDAA 190 (417)
Q Consensus 176 v~~ADiViLavpd~a 190 (417)
+.++|+||.+||...
T Consensus 218 l~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 218 LASADILTNGTKVGM 232 (312)
T ss_dssp HHHCSEEEECSSTTS
T ss_pred ccCceEEEECCcCCC
Confidence 889999999999764
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0031 Score=61.83 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..++| +++.|||.|. .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46889 9999999997 599999999988 8888876432 2367889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++.... +. ..++|+|++|+|++
T Consensus 209 Avg~p~l---I~--~~~vk~GavVIDVg 231 (288)
T 1b0a_A 209 AVGKPGF---IP--GDWIKEGAIVIDVG 231 (288)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred CCCCcCc---CC--HHHcCCCcEEEEcc
Confidence 9994431 21 13468999998876
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00074 Score=63.13 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViLavpd~a 190 (417)
++|+|||+|++|.++++.+... . |++++...+.+...... ...|+... ...++++.++ +.|+|++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999863322 2 67766666554432211 11243321 1456777776 5899999999998
Q ss_pred HHHHHHHHHh
Q 014863 191 QADNYEKIFS 200 (417)
Q Consensus 191 ~~~Vl~eI~p 200 (417)
+.++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888876654
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0057 Score=63.31 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=56.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHc-C----------------------ceecCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAA-G----------------------FTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~-G----------------------~~~~d~ 167 (417)
.||||||+|.||..++..+... .+++++...+.+ ++..+.+.+. | ...
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v--- 95 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAV--- 95 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEE---
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceE---
Confidence 5899999999999999888654 156654444443 3333333333 5 111
Q ss_pred CcCCHHhhhc--cCCeEEEeecch-hHHHHHHHHHhcCCCCcEEE
Q 014863 168 TLGDIYETIS--GSDLVLLLISDA-AQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 168 ~~~~~~Eav~--~ADiViLavpd~-a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+.|.+++++ +.|+|+++||+. .+.++... .|+.|+.|+
T Consensus 96 -~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv 136 (446)
T 3upl_A 96 -TDDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLV 136 (446)
T ss_dssp -ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEE
T ss_pred -ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEE
Confidence 468889886 589999999864 44554433 345677665
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0048 Score=60.83 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.|+ .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 36889 9999999996 699999999988 8888776422 2368889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++.... +. ..++|+|++|+|++
T Consensus 215 Avg~p~~---I~--~~~vk~GavVIDVg 237 (301)
T 1a4i_A 215 ATGQPEM---VK--GEWIKPGAIVIDCG 237 (301)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCccc---CC--HHHcCCCcEEEEcc
Confidence 9996432 21 23468999999876
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0062 Score=60.53 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=45.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC--ceecC--CCcCCHHhhhccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEEN--GTLGDIYETISGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~d--~~~~~~~Eav~~A 179 (417)
... +||+|||.|.||.++|..|... |+ ++++.+....+....+.+ +. +.... ....++ +++++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence 444 8999999999999999999887 76 676665543322222221 11 11000 012345 468999
Q ss_pred CeEEEeec
Q 014863 180 DLVLLLIS 187 (417)
Q Consensus 180 DiViLavp 187 (417)
|+||++.-
T Consensus 89 DiVvi~aG 96 (331)
T 4aj2_A 89 KLVIITAG 96 (331)
T ss_dssp EEEEECCS
T ss_pred CEEEEccC
Confidence 99999863
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0043 Score=59.90 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=89.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHHH-----cCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARA-----AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~~-----~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|+|+ |.||..+++.+... .+++++...+.+.... +.... .|+.. ..+.++++.++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999999 99999999988754 1666654444322110 11111 12222 34677888899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEE-eccchhhhhhccccCCCCCCcEEEeccCCchhhH--HHHHhhccccc--CC
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEIN--GA 257 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~-a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~~G~e~~--G~ 257 (417)
|-+++|..+.+++..... .|.-+++ ..|++....+. ....-+.+. +...||..--.. -++.+.--... ++
T Consensus 77 IDft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~~~~-L~~~a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~~ 151 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQA-IRDAAADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDYT 151 (273)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHHHH-HHHHTTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred EEcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHHHHH-HHHhcCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence 988888877776665443 4544443 55876432211 001123444 567888654331 01111000000 12
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014863 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~q----d-~sgea~e~a~al~~aiG~ 286 (417)
-+- ++-.|. | +||.++.+++.+....|.
T Consensus 152 die-iiE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 152 DIE-IIEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp EEE-EEEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred CEE-EEEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 222 233333 3 689999999999988875
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0072 Score=57.21 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=57.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHHHHHHc----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (417)
.+.|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....+...
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999999 87 666666543 2332222221
Q ss_pred -Cceec--CCCcC--CHHhhhccCCeEEEeecchhHHHHHHHH
Q 014863 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 -G~~~~--d~~~~--~~~Eav~~ADiViLavpd~a~~~Vl~eI 198 (417)
++... ...+. +.++.++++|+||.++++......+.+.
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 22110 11111 2346788999999999876665555543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0033 Score=61.54 Aligned_cols=160 Identities=15% Similarity=0.060 Sum_probs=93.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh---HHHHH-----HcCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s---~~~A~-----~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
.||+|+| +|.||..+++.+.+. .+++++...+..... .+... ..|+.. ..++++++.++|+|
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDVv 92 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEGI 92 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCEE
Confidence 6899999 999999999998765 166765555542211 00111 234443 56899999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHH--HHHhhccccc--CC
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr--~ly~~G~e~~--G~ 257 (417)
|-.++|....+.+..... .|. +|+=+.|++-...+. ....-+.+. +...||..--+.- .+-+.--... ++
T Consensus 93 IDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~~~-L~~aa~~~~-~~~a~N~SiGv~ll~~l~~~aa~~l~~~~ 167 (288)
T 3ijp_A 93 LDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKTEEAQ-IADFAKYTT-IVKSGNMSLGVNLLANLVKRAAKALDDDF 167 (288)
T ss_dssp EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHHTTSE-EEECSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhCcCC-EEEECCCcHHHHHHHHHHHHHHHhcCCCC
Confidence 999999887776665443 344 344456875322211 001112344 5788988755411 0000000001 12
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014863 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~q----d-~sgea~e~a~al~~aiG~ 286 (417)
-+- ++-.|. | +||.++.+++.+....|.
T Consensus 168 die-IiE~HH~~K~DaPSGTA~~la~~i~~~~~~ 200 (288)
T 3ijp_A 168 DIE-IYEMHHANKVDSPSGTALLLGQAAAEGRNI 200 (288)
T ss_dssp EEE-EEEEECTTCCCSSCHHHHHHHHHHHHHTTS
T ss_pred CEE-EEEccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 232 233343 2 789999999999998875
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=62.41 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc--------eecCCCcCCHHhhhcc
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~--------~~~d~~~~~~~Eav~~ 178 (417)
.++| +++.|+|.|-+|.+++..|.+. | +|++.+|+.++..+.+.+.+. .. + +.+..+.+.+
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-d--~~~~~~~~~~ 193 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEV-K--FSGLDVDLDG 193 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHE-E--EECTTCCCTT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeE-E--EeeHHHhhCC
Confidence 4678 9999999999999999999998 9 998888764443333333211 10 0 2233566788
Q ss_pred CCeEEEeecchhH
Q 014863 179 SDLVLLLISDAAQ 191 (417)
Q Consensus 179 ADiViLavpd~a~ 191 (417)
+|+||.++|....
T Consensus 194 ~DilVn~ag~~~~ 206 (287)
T 1nvt_A 194 VDIIINATPIGMY 206 (287)
T ss_dssp CCEEEECSCTTCT
T ss_pred CCEEEECCCCCCC
Confidence 9999999986543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.017 Score=56.49 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc----CceecCC--CcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~d~--~~~~~~Eav~~ADiVi 183 (417)
|||+|||.|.+|.++|..|..+ ++ ++++.+.......-.|.+. -+...+. ...+..+++++||+|+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVv 74 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIV 74 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEE
Confidence 6899999999999999999888 65 5655554432222222221 0110000 0122236789999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 75 itA 77 (294)
T 2x0j_A 75 VTA 77 (294)
T ss_dssp ECC
T ss_pred Eec
Confidence 976
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0077 Score=60.13 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=47.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHH--HcC-ceecC-CCcCCHHhhhcc
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG-FTEEN-GTLGDIYETISG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G-~~~~d-~~~~~~~Eav~~ 178 (417)
+++.+ +||+|||. |.+|.++|..+... |. ++++.+....+....+. ..+ +.... ....+..+++++
T Consensus 4 ~~~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d 76 (343)
T 3fi9_A 4 SYLTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD 76 (343)
T ss_dssp CCSCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC
Confidence 45566 99999997 99999999998887 74 66655543222221111 111 11000 012467789999
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
||+||++.
T Consensus 77 ADvVvita 84 (343)
T 3fi9_A 77 AKYIVSSG 84 (343)
T ss_dssp EEEEEECC
T ss_pred CCEEEEcc
Confidence 99999985
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0055 Score=59.00 Aligned_cols=80 Identities=15% Similarity=0.022 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|+|++||+|+||..+++. . +++++..+. ++.- +.|... +.|.++++.++|+|+-|.++.+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~---~------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL---G------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH---S------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc---C------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999887 2 454433333 2211 125543 56788888899999999987765
Q ss_pred HHHHHHHHhcCCCCcEEE-Eecc
Q 014863 192 ADNYEKIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~-~a~G 213 (417)
.+.+ .+.|+.|.-|+ .+-|
T Consensus 74 ~e~~---~~iL~aG~dvv~~S~g 93 (253)
T 1j5p_A 74 KEYS---LQILKNPVNYIIISTS 93 (253)
T ss_dssp HHHH---HHHTTSSSEEEECCGG
T ss_pred HHHH---HHHHHCCCCEEEcChh
Confidence 5544 44577787554 4444
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.014 Score=58.11 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=58.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecC---CchhHHHHHHcCcee--------cCCCc--CCHHhhhc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK---GSRSFAEARAAGFTE--------ENGTL--GDIYETIS 177 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~---~~~s~~~A~~~G~~~--------~d~~~--~~~~Eav~ 177 (417)
+||+||| .|.+|..+++.|.+. .+++++...+. ..+... ...+... .+-.+ .+.++..+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYK--DACYWFQDRDIPENIKDMVVIPTDPKHEEF 81 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHH--HHSCCCCSSCCCHHHHTCBCEESCTTSGGG
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHH--HhcccccccccccCceeeEEEeCCHHHHhc
Confidence 6899999 899999999998765 13466544432 112221 1122110 00001 14455556
Q ss_pred -cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 178 -~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|+||+|+|.....++.+.+. +.|..|++.+|.
T Consensus 82 ~~~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 82 EDVDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp TTCCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCCCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 8999999999998888776654 457778877763
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.03 Score=52.11 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
||||.|+|.|.+|.++++.|.+. |++|++..|...+ .......++......+.+.+ +.++|+||.+..+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGGG-HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChhh-hhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 38999999999999999999999 9998877776443 34444456543211233433 78999999988643
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0096 Score=50.98 Aligned_cols=108 Identities=19% Similarity=0.095 Sum_probs=72.1
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||. +..|..+.++|++. |++|+-.+.+... -.|... ..++.|+-. .|++++++|
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~p 67 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYIN 67 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECSC
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEeC
Confidence 78999997 56899999999999 8876655443221 146553 456666555 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
++...++++++... ... .|.+..|+.-..+.+ +.-..+++++ ||+.+-.
T Consensus 68 ~~~v~~~v~e~~~~-g~k-~v~~~~G~~~~e~~~--~a~~~Girvv---~nC~gv~ 116 (122)
T 3ff4_A 68 PQNQLSEYNYILSL-KPK-RVIFNPGTENEELEE--ILSENGIEPV---IGCTLVM 116 (122)
T ss_dssp HHHHGGGHHHHHHH-CCS-EEEECTTCCCHHHHH--HHHHTTCEEE---ESCHHHH
T ss_pred HHHHHHHHHHHHhc-CCC-EEEECCCCChHHHHH--HHHHcCCeEE---CCcCeEE
Confidence 99999999987653 223 366888984221111 0112466666 3776655
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0089 Score=61.68 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=51.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-HHHcCceecCCCcCC---HHhh-hccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~d~~~~~---~~Ea-v~~ADiViLav 186 (417)
|||-|+|+|..|..+|+.|... |++|++-+.. +...+. ....++....+...+ ++++ +++||+++.+|
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d-~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKD-GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESC-HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 8999999999999999999988 9998776654 444444 445565322122223 2333 78999999888
Q ss_pred cchhHH
Q 014863 187 SDAAQA 192 (417)
Q Consensus 187 pd~a~~ 192 (417)
+++..-
T Consensus 77 ~~De~N 82 (461)
T 4g65_A 77 NTDETN 82 (461)
T ss_dssp SCHHHH
T ss_pred CChHHH
Confidence 876543
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.016 Score=59.01 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=63.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC----Cchh--------HHHHHHcCceecCCCcCCHH
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~----~~~s--------~~~A~~~G~~~~d~~~~~~~ 173 (417)
.++. .||.|+|.|.+|.++|+.|... |. +|++.+++ ..+. ...|.+.... ....+++
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence 5667 8999999999999999999998 88 78888876 3221 3444442211 1246799
Q ss_pred hhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+++++|++|=+..|.... +++...|+++.+|.
T Consensus 259 eav~~ADVlIG~Sap~l~t---~emVk~Ma~~pIIf 291 (388)
T 1vl6_A 259 TALEGADFFIGVSRGNILK---PEWIKKMSRKPVIF 291 (388)
T ss_dssp HHHTTCSEEEECSCSSCSC---HHHHTTSCSSCEEE
T ss_pred HHHccCCEEEEeCCCCccC---HHHHHhcCCCCEEE
Confidence 9999999999887643221 24445577887664
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.011 Score=58.85 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=82.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee--cCCCcCCHHhhhccCCeEEEeec
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+||+||| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+.++ +.++|+|++|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g 77 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALP 77 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCC
Confidence 36899999 799999999999865 13465544443221111111111100 0111223333 578999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc-chhh-------hhhccccCCCCCC--cEEEeccCCchhhHHHHHhhcccccCC
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHG-FLLG-------HLQSMGLDFPKNI--GVIAVCPKGMGPSVRRLYVQGKEINGA 257 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G-~~i~-------~~~~~~i~~~~di--~VI~v~Pn~pg~~vr~ly~~G~e~~G~ 257 (417)
.....++.+.+. +.|..|++.++ +.+. |+.. +..+++ +++.+.|.- -++.+...
T Consensus 78 ~~~s~~~a~~~~---~aG~~VId~Sa~~r~~~~~~y~~~y~~---h~~~e~l~~~vygvpE~----n~~~i~~~------ 141 (345)
T 2ozp_A 78 HGVFAREFDRYS---ALAPVLVDLSADFRLKDPELYRRYYGE---HPRPDLLGRFVYAVPEL----YREALKGA------ 141 (345)
T ss_dssp TTHHHHTHHHHH---TTCSEEEECSSTTSCSCHHHHHHHHCC---CSSGGGTTSSEECCHHH----HHHHHHTC------
T ss_pred cHHHHHHHHHHH---HCCCEEEEcCccccCCChHHHHhhhcc---ccchhhhccCcEecccc----CHHHhhcC------
Confidence 998877776543 56777777766 4221 1211 211221 456666621 24444431
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014863 258 GINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~qd~sgea~e~a~al~~aiG~ 286 (417)
. +|+ ...++......++.-+..-|.
T Consensus 142 --~-iIa-np~C~tt~~~~~l~pL~~~~~ 166 (345)
T 2ozp_A 142 --D-WIA-GAGCNATATLLGLYPLLKAGV 166 (345)
T ss_dssp --S-EEE-CCCHHHHHHHHHHHHHHHTTC
T ss_pred --C-EEe-CCCcHHHHHHHHHHHHHHhcC
Confidence 2 344 566677776666655555443
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0097 Score=58.09 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..++| +++.|||.|.+ |..+|+.|... |.|..|.+..+. ..++.+.+++||+||.
T Consensus 154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA 209 (281)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence 36889 99999999986 99999998765 002467766432 2367889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-... +. ..++|+|++|+|++
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 210 AVGVAHL---LT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp CSCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCCcc---cC--HHHcCCCcEEEEcc
Confidence 9984432 21 23468999988775
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.02 Score=59.72 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=44.0
Q ss_pred CEEEEEcccchH--HHHHHHHHhhhhhhcC-CceEEEEecCCchhHHHHH--------HcCceecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG--~AiA~~Lr~s~~~~~~-G~~Vivg~r~~~~s~~~A~--------~~G~~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||.|+|| .+++..|... .+. +.+|++.++...+ .+.+. ..+....-....|.++++++||
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD 79 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEER-LDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHHH-HHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCC
Confidence 699999999985 5556677542 112 5577777665332 11111 1111100001357778999999
Q ss_pred eEEEeecc
Q 014863 181 LVLLLISD 188 (417)
Q Consensus 181 iViLavpd 188 (417)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999974
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.014 Score=57.78 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=56.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhh-hhhcCCceEEEEecCCch---------hH-HHHHHcCceecCCCcCCHHhhhc--c
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR---------SF-AEARAAGFTEENGTLGDIYETIS--G 178 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~-~~~~~G~~Vivg~r~~~~---------s~-~~A~~~G~~~~d~~~~~~~Eav~--~ 178 (417)
.+|+|||+|.+|..+++.|.+.- ...|.+++++...+.+.. .+ +.+.+.|... +..+ +..+.+. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCCC
Confidence 47999999999999999997731 111224454433333221 12 2333445221 1012 5566664 5
Q ss_pred CCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEe
Q 014863 179 SDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADiViLavpd~a~~-~Vl~eI~p~Lk~GaiL~~a 211 (417)
.|+|+.|+|+..+. ..++-+...|+.|+.|+.+
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 89999999987552 3344455567778876643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.024 Score=51.59 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=52.4
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc-eec--CCCcCCHHhhhccCC
Q 014863 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEE--NGTLGDIYETISGSD 180 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~--d~~~~~~~Eav~~AD 180 (417)
...|+| |+|.|.|. |-+|.++++.|.+. |++|++..|+.++ .+.....++ ... |-+ .+..+++.+.|
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D 86 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLE-EDFSHAFASID 86 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTT-SCCGGGGTTCS
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccH-HHHHHHHcCCC
Confidence 467889 99999997 99999999999999 9999888876544 334344455 321 211 45567888999
Q ss_pred eEEEeecc
Q 014863 181 LVLLLISD 188 (417)
Q Consensus 181 iViLavpd 188 (417)
+||.+...
T Consensus 87 ~vi~~ag~ 94 (236)
T 3e8x_A 87 AVVFAAGS 94 (236)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.021 Score=53.71 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=61.0
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceecCCCcCCHHhhhcc
Q 014863 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 100 ~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~~~Eav~~ 178 (417)
-||.. -.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+.. +.+.+.++....+. .. ++-+.+
T Consensus 22 ~~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~-~~-~~dL~~ 91 (223)
T 3dfz_A 22 MYTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKK-VG-EEDLLN 91 (223)
T ss_dssp CCEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSC-CC-GGGSSS
T ss_pred ccccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECC-CC-HhHhCC
Confidence 46655 57999 9999999999999999999999 988877765433333 33333334321111 12 345789
Q ss_pred CCeEEEeecchhHHHHHHHH
Q 014863 179 SDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI 198 (417)
+|+||.+|.+...-..+.+.
T Consensus 92 adLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 92 VFFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp CSEEEECCCCTHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHH
Confidence 99999999887665554444
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.019 Score=55.76 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=60.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH---Hhh-hccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~Ea-v~~ADiViLavp 187 (417)
++|.|+|+|..|..+++.|.+. |+ |++.+ .+++..+ +.+.|+....+...+. +++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vid-~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLAE-DENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEES-CGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEEe-CChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999888 88 66554 4455455 6666765322222333 234 789999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
++...-..-..+..+.++ .++.-+
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEA 211 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEE
Confidence 875443333444455555 455544
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.017 Score=57.84 Aligned_cols=148 Identities=11% Similarity=-0.004 Sum_probs=82.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCcee----cCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~----~d~~~~~~~Eav~~ADiViLa 185 (417)
+||+|+| .|.+|..+.+.|.+. . ++++...+..+...+.....+... .+-.+.+ ++...++|+||+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~------p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~a 89 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH------PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCC 89 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC------SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEEC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC------CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEc
Confidence 5899999 899999999999876 4 465555443222222222222110 0001222 4455789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEecc-chh-------hhhhccccCCCCC--CcEEEeccCCchhhHHHHHhhccccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHG-FLL-------GHLQSMGLDFPKN--IGVIAVCPKGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G-~~i-------~~~~~~~i~~~~d--i~VI~v~Pn~pg~~vr~ly~~G~e~~ 255 (417)
+|.....+.... + +.|..+++.++ |.+ .|+... +..++ -+++.+.|-. -++.+...
T Consensus 90 tp~~~s~~~a~~---~-~aG~~VId~sa~~R~~~~~~y~~~y~~~--~~~~~~l~~~vygvpE~----n~~~i~~~---- 155 (359)
T 1xyg_A 90 LPHGTTQEIIKE---L-PTALKIVDLSADFRLRNIAEYEEWYGQP--HKAVELQKEVVYGLTEI----LREDIKKA---- 155 (359)
T ss_dssp CCTTTHHHHHHT---S-CTTCEEEECSSTTTCSCHHHHHHHHSSC--CSCHHHHTTCEECCHHH----HHHHHHTC----
T ss_pred CCchhHHHHHHH---H-hCCCEEEECCccccCCchhhhhhhhcCC--cCChhhcCCceEECCcc----CHHHhccC----
Confidence 999888766543 3 66888887776 321 122110 11111 1456666621 23444431
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014863 256 GAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 256 G~Gv~~liav~qd~sgea~e~a~al~~aiG~ 286 (417)
. +|+ ...++......++.-+..-|.
T Consensus 156 ----~-iIa-npgC~tt~~~~~l~pL~~~~~ 180 (359)
T 1xyg_A 156 ----R-LVA-NPGCYPTTIQLPLVPLLKANL 180 (359)
T ss_dssp ----S-EEE-CCCHHHHHHHHHHHHHHHTTC
T ss_pred ----C-EEE-CCCcHHHHHHHHHHHHHHcCC
Confidence 2 344 666677777777666655543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.027 Score=58.13 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=56.5
Q ss_pred EEEEEcccchHHHHHHHHHhh---hh-hhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEee
Q 014863 113 QIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s---~~-~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLav 186 (417)
+|||||+|.+|..++..|.+. +. ..+.+++++...+.+....+.. ..+... ..+.++++. +.|+|+.++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEECC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEcC
Confidence 799999999999999888652 11 1233556544444433222211 223332 467888886 579999999
Q ss_pred cc-hhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SD-AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd-~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+ ..+.+++.+ .|+.|+.|+..
T Consensus 87 p~~~~h~~~~~~---AL~aGKhVvte 109 (444)
T 3mtj_A 87 GGLEPARELVMQ---AIANGKHVVTA 109 (444)
T ss_dssp CSSTTHHHHHHH---HHHTTCEEEEC
T ss_pred CCchHHHHHHHH---HHHcCCEEEEC
Confidence 96 777676643 34567665533
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.029 Score=54.85 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEe
Q 014863 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (417)
Q Consensus 111 ~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLa 185 (417)
||+|.|||.|-+|.+ +|+.|++. |++|.+.++... ...+..++.|+....+ .+.++.. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEEC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEEC
Confidence 589999999999996 99999999 999988877543 3345556678764210 2344444 479999985
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.029 Score=55.88 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=58.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC-----chhHHHHH--HcCceecCCCcC---CHHhhhccC
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-----SRSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-----~~s~~~A~--~~G~~~~d~~~~---~~~Eav~~A 179 (417)
|+||+||| .|.+|..+.+.|.+. .++++.....+. .+.....- -.|.. +-.+. +.++.++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~--~~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIV--ELPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTC--CCBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCcc--ceeEeccCCHHHHhcCC
Confidence 67999999 699999999988874 145554433221 12222110 01221 00112 344444899
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+||+|+|.....++.+++. +.|..|+|.++
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 99999999988888877654 46888887765
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.022 Score=58.86 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=63.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEe----cC----Cchh---HH-----HHHHcCceecC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEEN 166 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~----r~----~~~s---~~-----~A~~~G~~~~d 166 (417)
..+++ ++|.|+|.|..|.+++..|.+. |. +|++.+ |+ .... .. .+......
T Consensus 182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~--- 251 (439)
T 2dvm_A 182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE--- 251 (439)
T ss_dssp CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence 35678 8999999999999999999998 87 788888 65 2111 11 11111110
Q ss_pred CCcCCHHhhhccCCeEEEeecc--hhHHHHHHHHHhcCCCCcEEEEe
Q 014863 167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd--~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
....+..|+++++|+||-++|. ....+ +....|+++.+|.+.
T Consensus 252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDL 295 (439)
T 2dvm_A 252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPL 295 (439)
T ss_dssp CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEEC
T ss_pred cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEEC
Confidence 0134678999999999999997 54432 234567778877766
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.052 Score=53.29 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=44.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC--ceEEEEecCCchhHHHHH--Hc-Cc--eecC-CCcCCHHhhhccCCeE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR--AA-GF--TEEN-GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G--~~Vivg~r~~~~s~~~A~--~~-G~--~~~d-~~~~~~~Eav~~ADiV 182 (417)
+||+||| .|.+|.+++..|.+. | .+|++.+.... ...+. .. .. .... ....+..+++++||+|
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence 7999999 899999999999887 7 56666554432 22221 11 11 1100 0012567889999999
Q ss_pred EEeec
Q 014863 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
|++.+
T Consensus 81 i~~ag 85 (326)
T 1smk_A 81 IVPAG 85 (326)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99985
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.047 Score=54.15 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=56.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC--CchhHHHHHHcC----------------ceecCC------
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAG----------------FTEENG------ 167 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~--~~~s~~~A~~~G----------------~~~~d~------ 167 (417)
.||||+|+|.+|.-+++.|.+. .+++++...+. +........++. +.. ++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 5999999999999999998765 14676555542 333222222210 000 00
Q ss_pred CcCCHHhhh---ccCCeEEEeecchhHHHHHHHHHhcCCCCc-EEEEecc
Q 014863 168 TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 168 ~~~~~~Eav---~~ADiViLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
...++++.- .++|+|+.|+|.....+... .+++.|. .|.+++.
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSap 124 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISAP 124 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESSC
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEeccC
Confidence 012444441 57999999999988877654 4566784 4445543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.098 Score=54.34 Aligned_cols=77 Identities=19% Similarity=0.069 Sum_probs=44.1
Q ss_pred CEEEEEcccch-HHHHHHHHHhhhhhhcC-CceEEEEecCCchhH---HHHH----HcCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~-G~~Vivg~r~~~~s~---~~A~----~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|||.|+. |.++|..|... ..+. +.+|+++++...+.. +.+. ..+....-....|.++++++||+|
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~--~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDH--LEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHT--TTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhC--CCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence 59999999997 55566566543 0012 346766665533211 1111 111110000135778999999999
Q ss_pred EEeecchh
Q 014863 183 LLLISDAA 190 (417)
Q Consensus 183 iLavpd~a 190 (417)
|+++|...
T Consensus 107 Viaag~~~ 114 (472)
T 1u8x_X 107 MAHIRVGK 114 (472)
T ss_dssp EECCCTTH
T ss_pred EEcCCCcc
Confidence 99998743
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.059 Score=47.75 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=47.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC-HHhhhccCCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~Eav~~ADiViLavpd 188 (417)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..... .++......+.+ ..+++.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5899999 599999999999999 999888887644322221 344321111111 11678899999999864
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.035 Score=55.19 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=55.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEec-CCchhHHHHHHcCce--------ecCCCcC--CHHhhhccC
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFT--------EENGTLG--DIYETISGS 179 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~--------~~d~~~~--~~~Eav~~A 179 (417)
+||+||| .|.+|..+.+.|.+. ..++++...+ ..+.........++. ..+-.+. +.++ +.++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 6899999 899999999988765 1346554432 111111122212211 0000011 3333 4789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+|++|+|.....++.+... +.|..|++.++
T Consensus 79 DvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 99999999988888776554 45776777665
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.051 Score=56.06 Aligned_cols=75 Identities=20% Similarity=0.094 Sum_probs=45.3
Q ss_pred CEEEEEcccch-HHHHHHHHHh--hhhhhcC-CceEEEEecCC--chhHH---HHH----HcCceecCCCcCCHHhhhcc
Q 014863 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSFA---EAR----AAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG~G~m-G~AiA~~Lr~--s~~~~~~-G~~Vivg~r~~--~~s~~---~A~----~~G~~~~d~~~~~~~Eav~~ 178 (417)
+||+|||.|+. |.+++..|.. . +. +.+|+++++.. .+... .+. ..+....-....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 7787777765 3 11 23566666554 22111 111 12211000013577889999
Q ss_pred CCeEEEeecchh
Q 014863 179 SDLVLLLISDAA 190 (417)
Q Consensus 179 ADiViLavpd~a 190 (417)
||+||+++|...
T Consensus 84 AD~VVitagv~~ 95 (450)
T 1s6y_A 84 ADFVTTQFRVGG 95 (450)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEEcCCCCC
Confidence 999999999643
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.012 Score=58.85 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=20.3
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.||||||+|.||..++..|++.
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEecCHHHHHHHHHHHhc
Confidence 5899999999999999999875
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.029 Score=57.86 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=65.9
Q ss_pred cCCCCEEEEEccc----chHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 108 FNGINQIGVIGWG----SQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G----~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
|+- ++|+|||.+ ..|..+.++|++. | ..| +...+.... -.|... +.++.|+....|++
T Consensus 6 ~~p-~siAVvGas~~~~~~g~~v~~~l~~~------g~~~v-~pVnP~~~~-----i~G~~~----y~sl~~lp~~~Dla 68 (457)
T 2csu_A 6 FNP-KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKV-YPVNIKEEE-----VQGVKA----YKSVKDIPDEIDLA 68 (457)
T ss_dssp TSC-SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEE-EEECSSCSE-----ETTEEC----BSSTTSCSSCCSEE
T ss_pred cCC-CeEEEECcCCCCCchHHHHHHHHHHc------CCCEE-EEECCCCCe-----ECCEec----cCCHHHcCCCCCEE
Confidence 444 899999998 7899999999887 5 344 344332221 147664 56788887789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
++++|+..+.++++++... .-..+|+++.||.
T Consensus 69 vi~vp~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 69 IIVVPKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp EECSCHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred EEecCHHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 9999999999999886553 2344677888883
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.099 Score=52.09 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.|+| .||++||=| +++.|++..+... |.++.+..... ..-.+ .|.+.|.... ...+++|++
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKGV 222 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEECHHHHh
Confidence 5788 999999986 9999999999888 99887765432 12222 3346773311 156899999
Q ss_pred ccCCeEEEeec
Q 014863 177 SGSDLVLLLIS 187 (417)
Q Consensus 177 ~~ADiViLavp 187 (417)
++||+|+.-+=
T Consensus 223 ~~aDvvytd~w 233 (333)
T 1duv_G 223 EGADFIYTDVW 233 (333)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEeCCc
Confidence 99999998554
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.045 Score=56.14 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=49.8
Q ss_pred cCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+..+++|.|||+|-.|.+ +|+-|.+. |++|.+.+...+...+...+.|+.... ....+.++++|+||+.
T Consensus 15 ~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~---g~~~~~~~~a~~vv~s 84 (475)
T 1p3d_A 15 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYI---GHAEEHIEGASVVVVS 84 (475)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEE---SCCGGGGTTCSEEEEC
T ss_pred cccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEEC---CCCHHHcCCCCEEEEC
Confidence 344589999999999997 99999998 999887776554444455567876521 1122456789998885
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.062 Score=51.12 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=81.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEeecch
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViLavpd~ 189 (417)
+||+|+|+ |.||..+++.+.+. .+++++...+.+ .++++++. ++|+||=+++|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------------~dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------------DPLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------------CCTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------------CCHHHHhccCCcEEEEccChH
Confidence 48999996 99999999998754 167776555532 12334443 789999888888
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCC--CCCcEEEeccCCchhh--HHHHHhhcccccCCCceEEEe
Q 014863 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFP--KNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~--~di~VI~v~Pn~pg~~--vr~ly~~G~e~~G~Gv~~lia 264 (417)
...+.+..... .|. +|+-+.|++-...+....... +++. +...||..--. +-.+.+.--... ..+- ++-
T Consensus 57 a~~~~~~~a~~---~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv~ll~~l~~~aa~~~-~die-IiE 130 (245)
T 1p9l_A 57 VVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNFAIGAVLSMHFAKQAARFF-DSAE-VIE 130 (245)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHTSTTCE-EEECSCCCHHHHHHHHHHHHHGGGC-SEEE-EEE
T ss_pred HHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHHHHhCCCCC-EEEECCccHHHHHHHHHHHHHHhhc-CCEE-EEE
Confidence 88777765443 344 444466876442211000111 1333 45678765433 111221110000 1121 233
Q ss_pred ecC----C-CCHHHHHHHHHHHHHhC
Q 014863 265 VHQ----D-VDGRATNVALGWSVALG 285 (417)
Q Consensus 265 v~q----d-~sgea~e~a~al~~aiG 285 (417)
.|. | +||.++.+++.+....+
T Consensus 131 ~HH~~K~DaPSGTA~~lae~i~~~~~ 156 (245)
T 1p9l_A 131 LHHPHKADAPSGTAARTAKLIAEARK 156 (245)
T ss_dssp EECTTCCSSSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCCCHHHHHHHHHHHHhhc
Confidence 333 3 58999999999988765
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.035 Score=56.68 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=51.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC---chhHHHHHHcCceecCCCcC-CHHhhhcc-CCe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLG-DIYETISG-SDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~d~~~~-~~~Eav~~-ADi 181 (417)
.++| ++|.|||.|..|.+.|+-|++. |++|.+.++.. .+..+..++.|+... .. ..++.+.+ +|+
T Consensus 6 ~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~~~d~ 75 (451)
T 3lk7_A 6 TFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVV---CGSHPLELLDEDFCY 75 (451)
T ss_dssp TTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEE---ESCCCGGGGGSCEEE
T ss_pred hcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEE---ECCChHHhhcCCCCE
Confidence 4678 9999999999999999999999 99998877643 233455566787642 12 23345566 899
Q ss_pred EEEe
Q 014863 182 VLLL 185 (417)
Q Consensus 182 ViLa 185 (417)
||+.
T Consensus 76 vv~s 79 (451)
T 3lk7_A 76 MIKN 79 (451)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9985
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.1 Score=51.99 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=52.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.|+| .||++||=| +++.|++..+... |.+|.+...+. ..-.+ .|.+.|.... ...+++|++
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV 222 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHh
Confidence 5788 999999986 9999999999888 99887765432 12222 3336673211 156899999
Q ss_pred ccCCeEEEeec
Q 014863 177 SGSDLVLLLIS 187 (417)
Q Consensus 177 ~~ADiViLavp 187 (417)
++||+|..-+=
T Consensus 223 ~~aDvvytd~w 233 (335)
T 1dxh_A 223 KGVDFVHTDVW 233 (335)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEeCCc
Confidence 99999998554
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.02 Score=52.41 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEe
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLa 185 (417)
||+|.|.| .|-+|.++++.|.+. | ++|++..|..++..+ ....++......+.+ .+++++++|+||.+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 37899999 799999999999998 9 888877776432211 111122211111233 44678899999988
Q ss_pred ecchhHHHHHHHHHhcC
Q 014863 186 ISDAAQADNYEKIFSCM 202 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~L 202 (417)
..........+.+.+.+
T Consensus 96 a~~~~~~~~~~~~~~~~ 112 (236)
T 3qvo_A 96 LTGEDLDIQANSVIAAM 112 (236)
T ss_dssp CCSTTHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHH
Confidence 77644433333444444
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.052 Score=51.35 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=54.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHHHHHH-----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (417)
.+.|++ ++|.|||+|-+|..++++|... |+ ++.+.++.. .+....+..
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 87 555553321 122111111
Q ss_pred cCceec--CCCc--CCHHhhhccCCeEEEeecchhHHHHHHHH
Q 014863 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 160 ~G~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI 198 (417)
.++... +..+ .+..+.++++|+||.++........+.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 138 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAA 138 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 122110 0011 12446778899999999876665566554
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.069 Score=47.91 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=47.5
Q ss_pred CEEEEEc-ccchHHHHHHHHH-hhhhhhcCCceEEEEecCCc-hhHHHH-HHcCceecCCCcCC---HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~-~s~~~A-~~~G~~~~d~~~~~---~~Eav~~ADiViL 184 (417)
++|.|+| .|.+|.++++.|. +. |++|++..|+.. +..+.+ ...++......+.+ ..++++++|+||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 6999999999999 78 999888777643 222221 11222211111233 3467889999999
Q ss_pred eecch
Q 014863 185 LISDA 189 (417)
Q Consensus 185 avpd~ 189 (417)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88753
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.13 Score=50.73 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.|+| .||++||= +++..|++..+... |.++.+..... ..-.+ .|.+.|.... ...+++|+++
T Consensus 152 ~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav~ 222 (315)
T 1pvv_A 152 TIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE--LLHDPVKAVK 222 (315)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHTT
T ss_pred CcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHhC
Confidence 5789 99999996 79999999999888 99887765432 12222 3336673211 1578999999
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|+..+
T Consensus 223 ~aDvvy~~~ 231 (315)
T 1pvv_A 223 DADVIYTDV 231 (315)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEcc
Confidence 999999855
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.053 Score=56.16 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 ~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+++|.|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~S 88 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVS 88 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEEC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEEC
Confidence 489999999999996 89999999 99998877665555566677788752 22334457789999985
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.065 Score=52.03 Aligned_cols=66 Identities=26% Similarity=0.338 Sum_probs=41.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecC-CchhH-HHHHH--------cCceecCCCcCCHHhhhcc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSF-AEARA--------AGFTEENGTLGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~-~~~s~-~~A~~--------~G~~~~d~~~~~~~Eav~~ 178 (417)
+||+||| .|.+|.+++..|... ++ ++.+.+++ +.... ..+.+ ..+... ..+ .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~---~~~-~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR---QGG-YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE---ECC-GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEE---eCC-HHHhCC
Confidence 5899999 999999999999877 65 45555441 22111 11111 011110 123 678999
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999975
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.068 Score=52.43 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=43.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCC----ch-hHHHH--HHcC---ceecCCCcCCHH
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SR-SFAEA--RAAG---FTEENGTLGDIY 173 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~----~~-s~~~A--~~~G---~~~~d~~~~~~~ 173 (417)
+||+|||. |.+|.+++..|... |+ +|++ .+.+ .. ....+ ...+ +...-....+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l-~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQL-LEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEE-ECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEE-EcCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence 69999997 99999999999887 64 5655 4443 21 11111 1121 110000125678
Q ss_pred hhhccCCeEEEeec
Q 014863 174 ETISGSDLVLLLIS 187 (417)
Q Consensus 174 Eav~~ADiViLavp 187 (417)
+++++||+||++..
T Consensus 79 ~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 79 TAFKDADVALLVGA 92 (329)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhCCCCEEEEeCC
Confidence 89999999998864
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.08 Score=49.61 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=53.4
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchh--HHHH------HHcCceecCCCcCC---HHhhhcc
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISG 178 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s--~~~A------~~~G~~~~d~~~~~---~~Eav~~ 178 (417)
|++|.|+|. |.+|.++++.|.+. |++|++..|..... .+++ ...|+......+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence 478999996 99999999999999 99888777763211 1111 23455322112333 4567889
Q ss_pred CCeEEEeecch---hHHHHHHHH
Q 014863 179 SDLVLLLISDA---AQADNYEKI 198 (417)
Q Consensus 179 ADiViLavpd~---a~~~Vl~eI 198 (417)
+|+||.+.... .+..+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (308)
T 1qyc_A 78 VDVVISTVGSLQIESQVNIIKAI 100 (308)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCcchhhhhHHHHHHHH
Confidence 99999998753 234455443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.034 Score=53.07 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=50.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----CceecCCCcCC---HHhhhcc
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGD---IYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~---~~Eav~~ 178 (417)
.++| +++.|+| .|-+|.+++..|.+. |.+|++.+|+.++..+.+.+. ++......+.+ ..+++++
T Consensus 116 ~l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 116 SVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHh
Confidence 3678 9999999 999999999999999 998888888644433333221 21100000222 3566778
Q ss_pred CCeEEEeecc
Q 014863 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADiViLavpd 188 (417)
.|+||.+++.
T Consensus 189 ~DvlVn~ag~ 198 (287)
T 1lu9_A 189 AHFVFTAGAI 198 (287)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 8999999874
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.029 Score=55.67 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s---~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
.||||||+|.+|..+++.|.+. +...|.+++++...+.+.. ++ .++.. .....|.++++ +.|+|+.|+|.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence 5799999999999999999775 1111123444333333211 11 12211 11145777878 99999999997
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEE
Q 014863 189 AAQ-ADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 189 ~a~-~~Vl~eI~p~Lk~GaiL~~ 210 (417)
..+ .++..+ .|+.|+.|+.
T Consensus 77 ~~~a~~~~~~---AL~aGKhVVt 96 (332)
T 2ejw_A 77 VEAPLRLVLP---ALEAGIPLIT 96 (332)
T ss_dssp SHHHHHHHHH---HHHTTCCEEE
T ss_pred cHHHHHHHHH---HHHcCCeEEE
Confidence 643 344433 3456775554
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.033 Score=55.71 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-----c-eEEEEecCCc--hhHHHH----HH-cCceecCCCcCCHHhhh
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-----I-VVKVGLRKGS--RSFAEA----RA-AGFTEENGTLGDIYETI 176 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-----~-~Vivg~r~~~--~s~~~A----~~-~G~~~~d~~~~~~~Eav 176 (417)
|+||+|+| .|.+|..+.+.|.+. + . +++...+..+ +..... .. ...... -.+. +.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~ 78 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVL 78 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHh
Confidence 37999999 999999999999876 5 3 5444433211 211100 00 011110 1132 446
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
.++|+||+|+|.....++.+.+ +.|..+++.++
T Consensus 79 ~~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa 111 (352)
T 2nqt_A 79 GGHDAVFLALPHGHSAVLAQQL----SPETLIIDCGA 111 (352)
T ss_dssp TTCSEEEECCTTSCCHHHHHHS----CTTSEEEECSS
T ss_pred cCCCEEEECCCCcchHHHHHHH----hCCCEEEEECC
Confidence 6899999999998777766554 46777777665
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.16 Score=51.09 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcC--ceecCCCcCCHHh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~d~~~~~~~E 174 (417)
.|+| .||++||=| +++.|++..+... |.+|.+..... ....+ .|.+.| +.. ..+++|
T Consensus 173 ~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 241 (359)
T 2w37_A 173 KLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLDE 241 (359)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 5789 999999986 9999999999888 99887765432 12222 233567 333 578999
Q ss_pred hhccCCeEEEeec
Q 014863 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 av~~ADiViLavp 187 (417)
++++||+|+..+=
T Consensus 242 av~~aDvvytd~w 254 (359)
T 2w37_A 242 GLKGSNVVYTDVW 254 (359)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhcCCCEEEEccc
Confidence 9999999998554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.22 Score=48.86 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGT-HKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECC-CHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999988888 88 6655444 4556788888886421 1000 12333332 58
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEE
Confidence 9999998752 2345556677776 555543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.083 Score=51.41 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc------cCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~------~AD 180 (417)
.| ++|.|+|.|.+|...++-++.. |. +|++..++ ++..+.+++.|.... +....+..+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 68 9999999999999999999988 98 77665554 455677778786320 111123333332 589
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+||-++... +.++...+.++++..++..+
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 999999852 23444555666666655443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.12 Score=48.91 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=53.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH---HHHHcCceecCCCcCC---HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA---EARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~---~A~~~G~~~~d~~~~~---~~Eav~~ADiViL 184 (417)
++|.|+| .|.+|.++++.|.+. |++|++..|..+...+ .....|+......+.+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 5899999 499999999999999 9988877776432222 1123565421111333 4567889999999
Q ss_pred eecch---hHHHHHHHH
Q 014863 185 LISDA---AQADNYEKI 198 (417)
Q Consensus 185 avpd~---a~~~Vl~eI 198 (417)
+.... .+..+++..
T Consensus 86 ~a~~~~~~~~~~l~~aa 102 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAI 102 (318)
T ss_dssp CCCGGGSTTHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHH
Confidence 98753 234455433
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.057 Score=53.31 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=53.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC--ceEEE-EecCCchh--------HHHHH-HcCceecCCCcC---CHHhhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKV-GLRKGSRS--------FAEAR-AAGFTEENGTLG---DIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G--~~Viv-g~r~~~~s--------~~~A~-~~G~~~~d~~~~---~~~Eav 176 (417)
.||||||+|.+|..++..|.+.-+....| ++++. .+++..+. +.... ..++.. ... +.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 57999999999999999997751001112 44433 33332211 11111 123210 023 777776
Q ss_pred -ccCCeEEEeecch----hHHHHHHHHHhcCCCCcEEEE
Q 014863 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 177 -~~ADiViLavpd~----a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
.+.|+|+.|+|+. .+.+++.+ .|+.|+.|+.
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvt 119 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVT 119 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEE
T ss_pred CCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEe
Confidence 4689999999985 44455543 3556776654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.27 Score=48.99 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=62.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~A 179 (417)
-.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +..-.+..+.+ ...
T Consensus 212 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 212 RPG-DNVVILGGGPIGLAAVAILKHA------GASKVIL-SEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCC
Confidence 356 8999999999999999999888 98 6654 4444566788888886421 11112333332 259
Q ss_pred CeEEEeecch--hHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDA--AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~--a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+||-++... .....++-+...++++-.++..+
T Consensus 284 D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 284 KLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 9999999876 22233333323447776666544
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.2 Score=49.93 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=43.1
Q ss_pred cccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCC--ceEEEEecCCchh--HHHHHH--cC-ce--ecCCCcCCHH
Q 014863 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEARA--AG-FT--EENGTLGDIY 173 (417)
Q Consensus 104 ~~~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G--~~Vivg~r~~~~s--~~~A~~--~G-~~--~~d~~~~~~~ 173 (417)
++..... -||+|||. |.+|.+++..|.... =.+.+ .++.+.+...... .-.+.+ +. +. ..-....+..
T Consensus 18 ~~~s~~~-vKVaViGAaG~IG~~la~~la~~~-l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~ 95 (345)
T 4h7p_A 18 GPGSMSA-VKVAVTGAAGQIGYALVPLIARGA-LLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPR 95 (345)
T ss_dssp ----CCC-EEEEEESTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHH
T ss_pred CCCCCCC-CEEEEECcCcHHHHHHHHHHHhcc-ccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChH
Confidence 3445555 69999996 999999999888750 00001 1454444332111 111111 11 10 0000134678
Q ss_pred hhhccCCeEEEee
Q 014863 174 ETISGSDLVLLLI 186 (417)
Q Consensus 174 Eav~~ADiViLav 186 (417)
+++++||+||++-
T Consensus 96 ~a~~~advVvi~a 108 (345)
T 4h7p_A 96 VAFDGVAIAIMCG 108 (345)
T ss_dssp HHTTTCSEEEECC
T ss_pred HHhCCCCEEEECC
Confidence 8999999999965
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.40 E-value=0.11 Score=51.63 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=54.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC--CchhHHHHH----HcC-----cee--cCC---------C-
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAG-----FTE--ENG---------T- 168 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~--~~~s~~~A~----~~G-----~~~--~d~---------~- 168 (417)
.||||+|+|.+|.-+++.|.+. .+++++..++. +........ ..| ... +++ .
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4999999999999999998765 14566555542 222222221 111 100 000 0
Q ss_pred c--CCHHhh---hccCCeEEEeecchhHHHHHHHHHhcCCCCc--EEEEec
Q 014863 169 L--GDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSH 212 (417)
Q Consensus 169 ~--~~~~Ea---v~~ADiViLavpd~a~~~Vl~eI~p~Lk~Ga--iL~~a~ 212 (417)
. .+++++ -.++|+|+.|+|.....+..... ++.|. +|+...
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~---l~aGak~VVIs~p 126 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH---LKGGAKKVVISAP 126 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESSC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHH---HHcCCCEEEEecC
Confidence 1 144443 14799999999999888776554 34565 555443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.071 Score=51.90 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=63.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
-.| .+|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|.... ..+.++..+..|+|+-++.
T Consensus 175 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g 243 (348)
T 3two_A 175 TKG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFARN-EHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIP 243 (348)
T ss_dssp CTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSS-STTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCC
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCC
Confidence 357 8999999999999999999888 9887665544 455788888887531 2233333347899999998
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEe
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
... .++.....++++-.++..
T Consensus 244 ~~~---~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 244 THY---DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp SCC---CHHHHHTTEEEEEEEEEC
T ss_pred cHH---HHHHHHHHHhcCCEEEEE
Confidence 652 234445567777666544
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.1 Score=51.37 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcC--ceecCCCcCCHHh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~d~~~~~~~E 174 (417)
.|+| .||++||=| ++..|++..+... |.+|.+...+. ..-.+ .|.+.| +.. ..+++|
T Consensus 145 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 213 (307)
T 2i6u_A 145 ALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAHA 213 (307)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 5789 999999986 9999999999888 99887765442 11222 233667 333 578999
Q ss_pred hhccCCeEEEee
Q 014863 175 TISGSDLVLLLI 186 (417)
Q Consensus 175 av~~ADiViLav 186 (417)
++++||+|+..+
T Consensus 214 av~~aDvvy~~~ 225 (307)
T 2i6u_A 214 AAAGADVLVTDT 225 (307)
T ss_dssp HHTTCSEEEECC
T ss_pred HhcCCCEEEecc
Confidence 999999999854
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.089 Score=51.82 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |++.|||-+ ..|..+|.-|... +..|.+.... ..++.+.+++||+||.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 46889 999999966 6799999999888 8888765432 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 229 A~G~p~~---i~--~d~vk~GavVIDVG 251 (303)
T 4b4u_A 229 AVGKAEL---IQ--KDWIKQGAVVVDAG 251 (303)
T ss_dssp CSCSTTC---BC--GGGSCTTCEEEECC
T ss_pred ccCCCCc---cc--cccccCCCEEEEec
Confidence 9874322 21 34679999999874
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.1 Score=51.81 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.|+| .||++||=| ++..|++..+... |.+|.+...+. ..-.+ .|.+.|.... ...+++|++
T Consensus 164 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 234 (325)
T 1vlv_A 164 RLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEAL 234 (325)
T ss_dssp CSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHH
T ss_pred CcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHH
Confidence 5789 999999985 9999999999888 99887765432 12222 3336673211 156899999
Q ss_pred ccCCeEEEeec
Q 014863 177 SGSDLVLLLIS 187 (417)
Q Consensus 177 ~~ADiViLavp 187 (417)
++||+|+..+=
T Consensus 235 ~~aDvvyt~~w 245 (325)
T 1vlv_A 235 AGADVVYTDVW 245 (325)
T ss_dssp TTCSEEEECCC
T ss_pred ccCCEEEeccc
Confidence 99999998543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.27 Score=48.23 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +..- .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDI-NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcC-CHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 56 8999999999999999988888 88 6655444 4556788888886421 1000 12333332 58
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEEE
Confidence 9999998752 2345556677776 555533
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.17 Score=44.12 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=47.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLavp 187 (417)
|+|.|+|. |.+|.++++.|.+. |++|++..|+..+... ....++......+.+ ..++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999997 99999999999999 9998887776432111 001232211111223 4467889999999876
Q ss_pred c
Q 014863 188 D 188 (417)
Q Consensus 188 d 188 (417)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.17 Score=49.91 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=50.6
Q ss_pred ccC-CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHH----HHcCceecCCCcCCHHhhh
Q 014863 107 AFN-GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~-g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~d~~~~~~~Eav 176 (417)
.|+ | .||++|| .+++..|++..+... |.++.+...+. ....+.+ .+.|.... ...+++|++
T Consensus 142 ~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav 212 (307)
T 3tpf_A 142 MQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEAL 212 (307)
T ss_dssp CGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHH
T ss_pred CCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 477 9 9999999 458999999999888 98887765432 2222323 35554321 156899999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|+..+
T Consensus 213 ~~aDvvyt~~ 222 (307)
T 3tpf_A 213 KDKDVVITDT 222 (307)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEecC
Confidence 9999999877
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.25 Score=43.91 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=46.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC-HHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~Eav~~ADiViLavpd 188 (417)
|||.|+|. |.+|.++++.|.+. |++|++..|...+ .......++......+.+ ..+++.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 57999996 99999999999999 9998887776332 222222344321001111 11678899999998854
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.29 Score=48.04 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +..- .+..+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDL-NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-CHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 56 8999999999999999999888 88 6655444 4556788888886421 1000 12333332 48
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEEE
Confidence 9999998752 2345556677776 555533
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.15 Score=47.67 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC-c-----hhHH---HHHHcCceecCCCcCC---HHhhhc
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFA---EARAAGFTEENGTLGD---IYETIS 177 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~-----~s~~---~A~~~G~~~~d~~~~~---~~Eav~ 177 (417)
|++|.|+|. |.+|.++++.|.+. |++|++..|.. . ...+ .....|+......+.+ +.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~ 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT
T ss_pred CcEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh
Confidence 388999996 99999999999999 99888877764 1 1111 1123455321111333 456788
Q ss_pred cCCeEEEeecch---hHHHHHHHH
Q 014863 178 GSDLVLLLISDA---AQADNYEKI 198 (417)
Q Consensus 178 ~ADiViLavpd~---a~~~Vl~eI 198 (417)
++|+||.+.... .+..+++..
T Consensus 76 ~~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 76 QVDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp TCSEEEECSSSSCGGGHHHHHHHH
T ss_pred CCCEEEECCcccccccHHHHHHHH
Confidence 999999988753 334455433
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.12 Score=51.21 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcC--ceecCCCcCCHHhh
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYET 175 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~d~~~~~~~Ea 175 (417)
.|+| .||++|| .+++..|++..+... |.++.+..... ....+. +.+.| +.. ..+++|+
T Consensus 154 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~ea 222 (323)
T 3gd5_A 154 RLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFEA 222 (323)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 4789 9999999 568999999999887 99887765432 222232 33445 333 5789999
Q ss_pred hccCCeEEEee
Q 014863 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 v~~ADiViLav 186 (417)
+++||+|+..+
T Consensus 223 v~~aDvvyt~~ 233 (323)
T 3gd5_A 223 ARGAHILYTDV 233 (323)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEEec
Confidence 99999998765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.075 Score=52.19 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=62.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhh----ccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav----~~AD 180 (417)
.++| ++|.|+|.|.+|...++.++.. |.+|++..+... +..+.+++.|....| .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 4568 9999999999999999999988 988877666540 345777778875311 11 212222 3589
Q ss_pred eEEEeecchhHHHHH-HHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl-~eI~p~Lk~GaiL~~a 211 (417)
+||-++.... .+ +...+.|+++..++..
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEE
Confidence 9999988542 23 5556667776555543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.26 Score=47.50 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=62.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
..| ++|.|+|.|.+|...++-++.. |..+++..+.+++..+.+++.|.... +..-.+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 457 8999999999999999999888 88665555555666889999996421 11112333322 3478
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+-++... +.++.....++++..++..+
T Consensus 232 ~v~d~~G~~---~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 232 LILETAGVP---QTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp EEEECSCSH---HHHHHHHHHCCTTCEEEECC
T ss_pred ccccccccc---chhhhhhheecCCeEEEEEe
Confidence 888887643 23444455677777666443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.13 E-value=0.27 Score=48.21 Aligned_cols=92 Identities=22% Similarity=0.280 Sum_probs=60.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.| ++|.|+|.|.+|...++-++.. |. +|++..++ ++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDIN-KDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 56 8999999999999999999888 88 66554444 556778888886420 1000 12333332 58
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCcEEEEe
Confidence 9999999753 2344455567776 555543
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.073 Score=53.36 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=56.4
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecC--CchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~--~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|.||+||| .|..|.-+.+-|.+. ...++...... ..+.....- ......+ -.+.++...++|+||+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-----P~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 57999998 799999999998876 12344333222 122222110 0112210 1245555578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+|.....++.+++ .|..|+|.++
T Consensus 85 alp~~~s~~~~~~~-----~g~~VIDlSs 108 (351)
T 1vkn_A 85 ALPAGASYDLVREL-----KGVKIIDLGA 108 (351)
T ss_dssp CCSTTHHHHHHTTC-----CSCEEEESSS
T ss_pred CCCcHHHHHHHHHh-----CCCEEEECCh
Confidence 99998777666544 6888888876
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.16 Score=48.09 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC-c----hhHHH---HHHcCceecCCCcCC---HHhhhcc
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~----~s~~~---A~~~G~~~~d~~~~~---~~Eav~~ 178 (417)
||+|.|+|. |.+|.++++.|.+. |++|++..|.. + ...+. ....|+......+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence 478999995 99999999999998 99888877764 1 11111 123454321111333 4567889
Q ss_pred CCeEEEeecch---hHHHHHHHH
Q 014863 179 SDLVLLLISDA---AQADNYEKI 198 (417)
Q Consensus 179 ADiViLavpd~---a~~~Vl~eI 198 (417)
+|+||.+.... .+..+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAI 100 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCCccchhhHHHHHHHH
Confidence 99999988753 334555543
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.072 Score=52.56 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=48.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcC--ceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG--FTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G--~~~~d~~~~~~~Eav~~A 179 (417)
.|+| .||++|| .+++..|++..+... |.++.+....+ .... +++.| +.. ..+++|++++|
T Consensus 151 ~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~--~~~~g~~v~~----~~d~~eav~~a 217 (309)
T 4f2g_A 151 PIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLV--DAESAPFYQV----FDDPNEACKGA 217 (309)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGS--CGGGGGGEEE----CSSHHHHTTTC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHH--HHHcCCeEEE----EcCHHHHhcCC
Confidence 4789 9999999 568999999999888 98877764331 1111 12233 333 56899999999
Q ss_pred CeEEEee
Q 014863 180 DLVLLLI 186 (417)
Q Consensus 180 DiViLav 186 (417)
|+|+.-+
T Consensus 218 Dvvyt~~ 224 (309)
T 4f2g_A 218 DLVTTDV 224 (309)
T ss_dssp SEEEECC
T ss_pred CEEEecc
Confidence 9999854
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.13 Score=53.05 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+++|.|||+|-.|.+ +|+-|++. |++|.+.+...+...+...+.|+....+ .+. +.++++|+||+.
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFN--HRP-ENVRDASVVVVS 85 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESS--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 34589999999999998 99999998 9998877665544344555678765211 122 446789999885
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.15 Score=50.24 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=62.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc--------
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-------- 177 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-------- 177 (417)
-.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +....+..+.+.
T Consensus 181 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~g 252 (370)
T 4ej6_A 181 KAG-STVAILGGGVIGLLTVQLARLA------GATTVIL-STRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG 252 (370)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTT
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCC
Confidence 357 8999999999999999998888 98 5554 4444566788888887421 111224444444
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
..|+||-++... +.++.....++++-.++..+
T Consensus 253 g~Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 253 GVDVVIECAGVA---ETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp CEEEEEECSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred CCCEEEECCCCH---HHHHHHHHHhccCCEEEEEe
Confidence 389999998743 23444455566666665443
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.14 Score=51.30 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.|+| .||+|||= +++..|++..+... |.++.+...+. ....+. |.+.|.... ...+++|+++
T Consensus 176 ~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~--~~~d~~eav~ 246 (340)
T 4ep1_A 176 TFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIE--ILHNPELAVN 246 (340)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEE--EESCHHHHHT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EECCHHHHhC
Confidence 4789 99999995 58899999999888 99887765432 222222 335663210 1568999999
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|+..+
T Consensus 247 ~aDVvyt~~ 255 (340)
T 4ep1_A 247 EADFIYTDV 255 (340)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999998865
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.16 Score=49.19 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=62.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc----cCCeE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~----~ADiV 182 (417)
-.| ++|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|.... +....+..+.+. ..|+|
T Consensus 165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 165 RPG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDID-DAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp CTT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence 356 8999999999999999999988 9987665554 556788888886421 111123333333 68999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+.++... +.++.....++++-.++..
T Consensus 237 id~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 237 LVTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 9987633 3444555667776666544
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.25 Score=46.55 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=48.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH------cCcee---cCCC-cCCHHh
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFTE---ENGT-LGDIYE 174 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~------~G~~~---~d~~-~~~~~E 174 (417)
..++| |+|.|.|. |-+|.++++.|.+. |++|++..|...+....... .++.. .|-+ ..+..+
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 45677 99999996 99999999999999 99988777753322111111 12221 1100 123456
Q ss_pred hhccCCeEEEeec
Q 014863 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 av~~ADiViLavp 187 (417)
++++.|+||.+..
T Consensus 80 ~~~~~d~vih~A~ 92 (342)
T 1y1p_A 80 VIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 6778999998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.33 Score=47.55 Aligned_cols=92 Identities=20% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +..- .+..+.+. ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDI-NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECS-CGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcC-CHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 56 8999999999999999999888 88 6655444 3555778888886420 1000 12333332 58
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEEE
Confidence 9999998753 2345556677776 555543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.19 Score=44.53 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
+| ++|.|+| .|.+|.++++.++.. |.+|++..++ .+..+.+++.|.... |....+..+.+ ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 46 8999999 699999999999988 9887766654 344556666665210 11111222222 2479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|+.++.. +.++...+.|+++-.++..+.
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 99988864 345566667777766665543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.081 Score=52.65 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=62.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCH-Hhhhc------cCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~Eav~------~AD 180 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ .+..+.+++.|....+....+. .+.+. ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGDQN-PERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEESC-HHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 56 8999999999999999988888 88 77655544 4557788888874212111122 23222 589
Q ss_pred eEEEeecchh-----------HHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a-----------~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+||-++.... ....+++....++++-.++..
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 9999998542 123455666667777666544
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.14 Score=50.28 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~ADi 181 (417)
.| ++|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|.... +....+..+.+. ..|+
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDI-VESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEES-CHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECC-CHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 46 8999999999999999988888 88 4554444 4556778888886320 111123333332 4799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
||-++... +.++.....++++-.++..+
T Consensus 262 vid~~g~~---~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTGSP---EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEECC
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEeC
Confidence 99998753 23455556677766655443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.14 Score=50.73 Aligned_cols=96 Identities=25% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCC-HHhhh------ccCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~Eav------~~AD 180 (417)
.| .+|.|+|.|.+|...++-++.. |. .|++.. .+.+..+.+++.|....+..-.+ ..+.+ ...|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~-~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGD-LNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEE-SCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEc-CCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCC
Confidence 56 8999999999999999988888 88 555444 44556788888887431211111 23322 2579
Q ss_pred eEEEeecchh------------HHHHHHHHHhcCCCCcEEEEec
Q 014863 181 LVLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a------------~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+||-++.... ....+++....++++-.++..+
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 9999997542 1124555566677766655443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.072 Score=47.73 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=47.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC----HHhhhccCCeEEEee
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~----~~Eav~~ADiViLav 186 (417)
|||.|+| .|.+|.++++.|.+. |++|++..|...+..+. .++......+.+ ..+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 5899999 899999999999998 99988887764432111 233211111333 345778899999988
Q ss_pred cch
Q 014863 187 SDA 189 (417)
Q Consensus 187 pd~ 189 (417)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 753
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.31 Score=47.50 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=30.6
Q ss_pred cccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 98 ~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
+|.+..+.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++
T Consensus 24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD~ 68 (292)
T 3h8v_A 24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFDY 68 (292)
T ss_dssp --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECC
T ss_pred ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 3445334467888 9999999999999999999998 76 5555543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.26 Score=48.57 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCC--cCCHHhhhc-----cC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~--~~~~~Eav~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+. +...+.+++.|.... +.. ..+..+.+. ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRIIGIDID-SKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEEEECSC-TTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 56 8999999999999999999988 88 66554434 456788999887421 100 122333332 48
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
|+||-++... +.++.....+++| -.++..
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEE
Confidence 9999998863 3345556677774 555544
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.19 Score=49.84 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=48.4
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcC--ceecCCCcCCHHhh
Q 014863 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYET 175 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~d~~~~~~~Ea 175 (417)
.|+| .||++||=|+ +..|++..+... |.+|.+..... ..-.+. |.+.| +.. ..+++|+
T Consensus 152 ~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ea 220 (321)
T 1oth_A 152 SLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLEA 220 (321)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHHH
Confidence 5789 9999999864 777777777666 88887765442 111222 22455 333 5789999
Q ss_pred hccCCeEEEee
Q 014863 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 v~~ADiViLav 186 (417)
+++||+|+.-+
T Consensus 221 v~~aDvvy~d~ 231 (321)
T 1oth_A 221 AHGGNVLITDT 231 (321)
T ss_dssp HTTCSEEEECC
T ss_pred hccCCEEEEec
Confidence 99999999965
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.15 Score=50.04 Aligned_cols=72 Identities=21% Similarity=0.124 Sum_probs=42.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--cC-c--eecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--~G-~--~~~d~~~~~~~Eav~~ADiViLa 185 (417)
|||+||| .|.+|.+++..|.... +...++++.+... +....+.+ .. . ....-...+..+++++||+||++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEe
Confidence 6899999 8999999999986530 1123555555443 22222221 11 1 11000002456789999999998
Q ss_pred ec
Q 014863 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
..
T Consensus 77 ag 78 (312)
T 3hhp_A 77 AG 78 (312)
T ss_dssp CS
T ss_pred CC
Confidence 74
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.081 Score=47.36 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=48.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEee
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLav 186 (417)
||||.|+| .|.+|.++++.|.+. |++|++..|...+.... ..++......+.+ ..++++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 58999999 699999999999999 99988877764332111 1232211111233 446788999999998
Q ss_pred cch
Q 014863 187 SDA 189 (417)
Q Consensus 187 pd~ 189 (417)
.+.
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.18 Score=47.25 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCch----hHHH---HHHcCceecCCCcCC---HHhhhccC
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~----s~~~---A~~~G~~~~d~~~~~---~~Eav~~A 179 (417)
+|+|.|+| .|.+|.++++.|.+. |++|++..|..+. ..+. ....|+......+.+ +.++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 77 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 77 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCC
Confidence 37899999 599999999999998 9988877776321 1111 123454322112333 45678899
Q ss_pred CeEEEeecch
Q 014863 180 DLVLLLISDA 189 (417)
Q Consensus 180 DiViLavpd~ 189 (417)
|+||.+....
T Consensus 78 d~vi~~a~~~ 87 (313)
T 1qyd_A 78 DVVISALAGG 87 (313)
T ss_dssp SEEEECCCCS
T ss_pred CEEEECCccc
Confidence 9999988643
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.12 Score=50.99 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=53.8
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.|+| .||++||= |++..|++..+... |.+|.+.... +....+.+++.|.... ...+++|++++|
T Consensus 152 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (308)
T 1ml4_A 152 RIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKL 222 (308)
T ss_dssp CSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTC
T ss_pred CCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 5788 99999997 48999999999887 9988776543 2233456666675321 146899999999
Q ss_pred CeEEEeec
Q 014863 180 DLVLLLIS 187 (417)
Q Consensus 180 DiViLavp 187 (417)
|+|+..+=
T Consensus 223 Dvvyt~~~ 230 (308)
T 1ml4_A 223 DVLYVTRI 230 (308)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998663
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.24 Score=50.83 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=65.2
Q ss_pred cccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC--ceecCCCcCCHH
Q 014863 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIY 173 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~d~~~~~~~ 173 (417)
..++| +||+|.|+- +-...++..|.+. |.+|.+++..-.+ +.....| +.. +.+.+
T Consensus 314 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~~~~~----~~~~~ 380 (450)
T 3gg2_A 314 GNVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAMK--EAQKRLGDKVEY----TTDMY 380 (450)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCHH--HHHHHHGGGSEE----CSSHH
T ss_pred ccCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCcH--HHHHhcCcccee----cCCHH
Confidence 35688 999999984 4467888888888 9988776543221 1112233 443 46788
Q ss_pred hhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 014863 174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~~-Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++++++|.|+++|.-....+ -++.+...|+ +.+|+|.-++
T Consensus 381 ~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 381 DAVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HHTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HHhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 99999999999999776643 2456666675 4577776654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.19 Score=48.23 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=53.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH------HHHHcCceecCCCcCC---HHhhhc--cC
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA------EARAAGFTEENGTLGD---IYETIS--GS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~------~A~~~G~~~~d~~~~~---~~Eav~--~A 179 (417)
++|.|+|. |.+|.++++.|.+. |++|++..|......+ .....|+......+.+ ..++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999997 99999999999998 9988888876421111 1123455432222333 345777 99
Q ss_pred CeEEEeecchhH---HHHHHHH
Q 014863 180 DLVLLLISDAAQ---ADNYEKI 198 (417)
Q Consensus 180 DiViLavpd~a~---~~Vl~eI 198 (417)
|+||.+...... ..+++.+
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa 106 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAM 106 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHH
T ss_pred CEEEECCchhhHHHHHHHHHHH
Confidence 999999886422 3455443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.36 Score=46.97 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=60.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCc-CC-HHh---hh-----c
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IYE---TI-----S 177 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~~-~~E---av-----~ 177 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..+ +.+..+.+++.|.... +... .+ .++ .. .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTAR-SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEcC-CHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 57 8999999999999999988888 988655444 4555778888886320 1110 11 112 22 2
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
..|+||-++.... .++.....++++-.++..
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5899999997642 344455567776665544
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.11 Score=51.03 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~ADi 181 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..+. .+..+.+++.|.... |....+..+.+ ...|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSSS-REKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEecC-chhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 46 8999999999999999999988 9987766554 455677888886421 11112333322 16899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+-++...... .....++++-.++..+
T Consensus 261 vid~~g~~~~~----~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 261 ILEIAGGAGLG----QSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEETTSSCHH----HHHHHEEEEEEEEEEC
T ss_pred EEECCChHHHH----HHHHHhhcCCEEEEEe
Confidence 99999855433 3444566666555443
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.19 Score=48.83 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh------ccCCe
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav------~~ADi 181 (417)
.| ++|.|+| .|.+|...++-++.. |.+|++. ++ ....+.+++.|....+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 56 8999999 799999999999988 9887665 44 4457788888875322 122333333 26899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+-++... .+......|+++-.++...+
T Consensus 220 vid~~g~~----~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 220 VYDTLGGP----VLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp EEESSCTH----HHHHHHHHEEEEEEEEESCC
T ss_pred EEECCCcH----HHHHHHHHHhcCCeEEEEcc
Confidence 99998853 44445556666666655543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.33 Score=47.40 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=59.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCC---cCCHHhhh-----cc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~---~~~~~Eav-----~~ 178 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+. +...+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLS-ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 57 8999999999999999988888 88 66655443 555778888886320 100 00111122 35
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.|+||-++.... .++.....++++-.++..
T Consensus 243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 899999997532 344445567777665544
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.22 Score=49.86 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEe-cC-CchhHHHH-------------HHcCceecCCCcCCHHhh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEA-------------RAAGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~-r~-~~~s~~~A-------------~~~G~~~~d~~~~~~~Ea 175 (417)
.|||||| .|..|.-+.+-|.+. ...++.... ++ ..+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 699999999977554 123443322 22 12323221 111111 1122 34
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+.++|+||+|+|.....++.+.+. +.|..++|.++
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 579999999999998888877654 46888887765
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.22 Score=49.86 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEe-cC-CchhHHHH-------------HHcCceecCCCcCCHHhh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEA-------------RAAGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~-r~-~~~s~~~A-------------~~~G~~~~d~~~~~~~Ea 175 (417)
.|||||| .|..|.-+.+-|.+. ...++.... ++ ..+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 699999999977554 123443322 22 12323221 111111 1122 34
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+.++|+||+|+|.....++.+.+. +.|..++|.++
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 579999999999998888877654 46888887765
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.21 Score=50.36 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC------chhHH----HHHHcCceecCCCcCCHHh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~------~~s~~----~A~~~G~~~~d~~~~~~~E 174 (417)
.|+| .||++||=+ +++.|++..+... |.++.+..... +.-.+ .+.+.|.... ...+++|
T Consensus 177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e 247 (365)
T 4amu_A 177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL 247 (365)
T ss_dssp SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence 4789 999999987 7889999888877 99887764432 11122 2445563221 1568999
Q ss_pred hhccCCeEEEe
Q 014863 175 TISGSDLVLLL 185 (417)
Q Consensus 175 av~~ADiViLa 185 (417)
++++||+|+.-
T Consensus 248 av~~aDVVytd 258 (365)
T 4amu_A 248 AAQDADVIYTD 258 (365)
T ss_dssp HTTTCSEEEEC
T ss_pred HhcCCCEEEec
Confidence 99999999984
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.22 Score=49.49 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=49.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCCch------hHHHHH----H--cCceecCCCcCCH
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEAR----A--AGFTEENGTLGDI 172 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~------s~~~A~----~--~G~~~~d~~~~~~ 172 (417)
.++| .||++||=| ++..|++..+... |.++.+....+-. ..+.++ + .|.... ...++
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~--~~~d~ 228 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIK--IFHDC 228 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEE--EESSH
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEE--EEcCH
Confidence 6889 999999975 8899999999888 9988776543221 223333 3 463211 15789
Q ss_pred HhhhccCCeEEEe
Q 014863 173 YETISGSDLVLLL 185 (417)
Q Consensus 173 ~Eav~~ADiViLa 185 (417)
+|++++||+|+.-
T Consensus 229 ~eav~~aDvvytd 241 (328)
T 3grf_A 229 KKGCEGVDVVYTD 241 (328)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHhcCCCEEEec
Confidence 9999999999863
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.15 Score=53.07 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=56.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC-H-HhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-I-YETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~-~Eav~~ADiViLavpd~ 189 (417)
++|.|||+|..|..+|+.|.+. |++|++.+..... .+.+. -+...|.+-.+ + +.-+++||.++++++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~-~~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESP-VCNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCS-SCCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHH-HhhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999998 9988777655333 22221 22221211111 1 23478999999999987
Q ss_pred hHHHHHHHHHhcCCCC-cEEE
Q 014863 190 AQADNYEKIFSCMKPN-SILG 209 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~G-aiL~ 209 (417)
..--+.-.++..+.+. .+|.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEE
Confidence 5433333444445554 4454
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.35 Score=45.19 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=48.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhH-HHHHHcCceecCCCcCC---HHhhhccCCeEEEe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLa 185 (417)
|+|.|.|. |.+|.++++.|.+. | ++|++..|...+.. +.....|+......+.+ ..++++++|+||.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999997 99999999999998 8 88888777643321 22223454321111333 44678899999998
Q ss_pred ecc
Q 014863 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 763
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.098 Score=51.19 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.|+| .||++||= +++..|++..+... |.+|.+...+.-.-.. ..+.|+.. ..+++|++++||+|+
T Consensus 143 ~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvvy 210 (291)
T 3d6n_B 143 EVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVVI 210 (291)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEEE
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEEE
Confidence 5789 99999997 89999999999988 9988776543211001 12457654 578999999999999
Q ss_pred Eeecch
Q 014863 184 LLISDA 189 (417)
Q Consensus 184 Lavpd~ 189 (417)
. +-.+
T Consensus 211 ~-~~~q 215 (291)
T 3d6n_B 211 W-LRLQ 215 (291)
T ss_dssp E-CCCC
T ss_pred E-eCcc
Confidence 8 6543
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.39 Score=49.25 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=57.1
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcCCHHhhhccC
Q 014863 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 101 f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~Eav~~A 179 (417)
||.. -.++| ++|.|||.|..|.+-++.|.+. |.+|.+......+..+...+ .++....+. .+ .+-+.++
T Consensus 4 ~P~~-~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~-~~-~~~l~~~ 73 (457)
T 1pjq_A 4 LPIF-CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSC 73 (457)
T ss_dssp EEEE-ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTC
T ss_pred eeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECC-CC-ccccCCc
Confidence 4433 45789 9999999999999999999999 99888776543333333222 334321111 12 2346789
Q ss_pred CeEEEeecchhH-HHHHHH
Q 014863 180 DLVLLLISDAAQ-ADNYEK 197 (417)
Q Consensus 180 DiViLavpd~a~-~~Vl~e 197 (417)
|+||.++.+... ..++..
T Consensus 74 ~lVi~at~~~~~n~~i~~~ 92 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDA 92 (457)
T ss_dssp SEEEECCSCHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHH
Confidence 999998887754 345543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.34 Score=46.95 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh----ccCCeEE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav----~~ADiVi 183 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..++ ....+.+++.|.... |....+..+.+ ...|+||
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 56 8999999999999999999988 9887665544 555677788886321 11111332322 4689999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-++... ..++.....++++-.++..
T Consensus 236 d~~g~~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 236 VTAVSK---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 998752 2344445566666555543
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.17 Score=50.72 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=52.4
Q ss_pred CCEEEEEc-ccchHHHHHHH-HHhhhhhhcCCc---eEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIG-WGSQGPAQAQN-LRDSLAEAKSDI---VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~-Lr~s~~~~~~G~---~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|+||+|+| .|.+|..+.+. |.+. ++ .+... .++..+............. ...+.++ .+++|+||.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence 57999999 99999999994 4433 32 33222 2221111100000111110 0123333 578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCc--EEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~Ga--iL~~a~G 213 (417)
|+|.....+..+.+.. .|. +|++.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9998888887776543 454 6777665
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.91 E-value=0.12 Score=49.24 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCc-CCHHhhhccCCeEEEe
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~~~~Eav~~ADiViLa 185 (417)
.| ++|.|+|. |.+|...++-++.. |.+|++..++ .+..+.+++.|.... +... .+..+.+...|+|+-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 46 89999998 99999999999888 9887766654 344567777786420 0000 112233467899998
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+... .++.....++++-.++..
T Consensus 196 ~g~~----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 VRGK----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp CSCT----THHHHHTTEEEEEEEEEC
T ss_pred CCHH----HHHHHHHhhccCCEEEEE
Confidence 7763 445556677776655544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.46 Score=46.53 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----Cc---eecCCCcCCHHhh-hc
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYET-IS 177 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~---~~~d~~~~~~~Ea-v~ 177 (417)
..-.| ++|..||+|..|.+...-.+.. |.+| ++.+.++...+.|++. |. ... ..+..+. -.
T Consensus 119 ~l~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V-~gIDis~~~l~~Ar~~~~~~gl~~v~~v---~gDa~~l~d~ 187 (298)
T 3fpf_A 119 RFRRG-ERAVFIGGGPLPLTGILLSHVY------GMRV-NVVEIEPDIAELSRKVIEGLGVDGVNVI---TGDETVIDGL 187 (298)
T ss_dssp TCCTT-CEEEEECCCSSCHHHHHHHHTT------CCEE-EEEESSHHHHHHHHHHHHHHTCCSEEEE---ESCGGGGGGC
T ss_pred CCCCc-CEEEEECCCccHHHHHHHHHcc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCeEEE---ECchhhCCCC
Confidence 34567 9999999999765533222223 6665 5666666666666543 43 111 1233332 14
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..|+|++..-.....++++++...|+||..|+
T Consensus 188 ~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 188 EFDVLMVAALAEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp CCSEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred CcCEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence 67999987654455689999999999998765
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.31 Score=47.09 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=32.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
-.++| ++|.|||.|..|..-++.|.+. |.+|+|....
T Consensus 9 ~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap~ 45 (274)
T 1kyq_A 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSPD 45 (274)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEEE
T ss_pred EEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcCC
Confidence 46789 9999999999999999999999 9988776543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.84 E-value=1 Score=46.24 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCC----HHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGD----IYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~----~~Eav~~ADiViLav 186 (417)
++|.|+|.|++|..+|+.|.+ +++|.+-.+...+....+.+.- ..+.++...+ .++-+.++|+++-+|
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 899999999999999999854 5677777766556556666542 2221222233 235689999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.++..-=+..-++..+...+++..+.-.
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~vn~~ 336 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLIQRG 336 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred cCcHHHHHHHHHHHHcCCcccccccccc
Confidence 9876543444556667666677766543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.36 Score=46.07 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH---HHH-------cCceecCCCcCC---H
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARA-------AGFTEENGTLGD---I 172 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~---A~~-------~G~~~~d~~~~~---~ 172 (417)
.+++ |+|.|.| .|-+|.++++.|.+. |++|++..|........ ... .++......+.+ .
T Consensus 22 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (351)
T 3ruf_A 22 IFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC 94 (351)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred CCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 4566 9999999 599999999999999 99988877754322222 111 233321111233 4
Q ss_pred HhhhccCCeEEEeec
Q 014863 173 YETISGSDLVLLLIS 187 (417)
Q Consensus 173 ~Eav~~ADiViLavp 187 (417)
.++++++|+||.+..
T Consensus 95 ~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 95 EQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHHTTTCSEEEECCC
T ss_pred HHHhcCCCEEEECCc
Confidence 467889999998875
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.2 Score=48.28 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=62.6
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccC
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~A 179 (417)
-.| ++|.|+| .|.+|.+.++-++.. |.+|++..++ .+..+.+++.|.... +....+..+.+ ...
T Consensus 147 ~~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 147 KKG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAST-DEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCc
Confidence 356 8999999 899999999999988 9988766654 455678888886421 11112333322 258
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++... .++.....++++-.++..+
T Consensus 219 D~vid~~g~~----~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 219 DASFDSVGKD----TFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEEECCGGG----GHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCChH----HHHHHHHHhccCCEEEEEc
Confidence 9999999864 3444455667766666544
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.39 Score=48.34 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=61.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH--------------
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-------------- 172 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-------------- 172 (417)
-.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. ....+.+++.|... +.+.
T Consensus 219 ~~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~~~~ 286 (447)
T 4a0s_A 219 KQG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVSS-AQKEAAVRALGCDL----VINRAELGITDDIADDPR 286 (447)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCC----EEEHHHHTCCTTGGGCHH
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCE----EEeccccccccccccccc
Confidence 356 89999998 99999999999988 9887776654 55577888888642 1111
Q ss_pred ---------Hhh----h-ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 173 ---------YET----I-SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ---------~Ea----v-~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.+. . ...|+||-++... .++.....++++-.++..+
T Consensus 287 ~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 287 RVVETGRKLAKLVVEKAGREPDIVFEHTGRV----TFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSEEEECSCHH----HHHHHHHHSCTTCEEEESC
T ss_pred ccchhhhHHHHHHHHHhCCCceEEEECCCch----HHHHHHHHHhcCCEEEEEe
Confidence 111 1 3589999998863 4455556777777666543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.33 Score=47.65 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=62.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh-----ccCCe
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav-----~~ADi 181 (417)
.| ++|.|+| .|.+|...++-++.. |.+|++..+. ....+.+++.|.... +....+..+.+ ...|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 56 8999999 799999999999988 9887666554 445677777886421 11112333333 25799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
||-++... .++.....++++-.++..+.
T Consensus 235 vid~~g~~----~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 235 VYESVGGA----MFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEECSCTH----HHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCHH----HHHHHHHHHhcCCEEEEEeC
Confidence 99999863 45555566666666555443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.23 Score=47.83 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-HHcCceec-CCCcCCHHhhhc-----cCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETIS-----GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-d~~~~~~~Eav~-----~AD 180 (417)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..++ ....+.+ ++.|.... |....+..+.+. ..|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 56 89999998 99999999999988 9988766655 3445666 67776320 111123333332 489
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|+-++.. +.++.....++++-.++..+.
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence 99998874 356666777888776665543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.23 Score=47.71 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=62.6
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccC
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~A 179 (417)
-.| ++|.|+| .|.+|.+.++-++.. |.+|++..++ ....+.+++.|.... +....+..+.+ ...
T Consensus 139 ~~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 139 KPG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSS-PEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCc
Confidence 356 8999999 899999999999988 9988766654 445677777775320 11112333332 258
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++... .+....+.++++-.++..+
T Consensus 211 Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 211 PVVYDGVGQD----TWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEEESSCGG----GHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCChH----HHHHHHHHhcCCCEEEEEe
Confidence 9999988863 3445566777776666544
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.3 Score=50.92 Aligned_cols=71 Identities=23% Similarity=0.083 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
-+|++ ++|-|||.|-.|.+ +|+-|++. |++|.+.+.... ...+..++.|+....+ .+.++...++|+||
T Consensus 15 ~~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~vV 85 (524)
T 3hn7_A 15 LYFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLVV 85 (524)
T ss_dssp ----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEEE
T ss_pred eeecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEEE
Confidence 36777 99999999999996 78888888 999988776532 3345556678765211 23344446799999
Q ss_pred Ee
Q 014863 184 LL 185 (417)
Q Consensus 184 La 185 (417)
+.
T Consensus 86 ~S 87 (524)
T 3hn7_A 86 VG 87 (524)
T ss_dssp EC
T ss_pred EC
Confidence 84
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.52 E-value=0.14 Score=49.82 Aligned_cols=94 Identities=24% Similarity=0.276 Sum_probs=60.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc------cC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~------~A 179 (417)
-.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +....+..+.+. ..
T Consensus 165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 165 KLG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFA-VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEE-ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEE-ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCC
Confidence 356 8999999999999999999888 88 5655 4444556788888887421 111122333221 48
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++.... .++.....++++-.++..+
T Consensus 237 D~v~d~~g~~~---~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 237 DKVVIAGGDVH---TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCCChH---HHHHHHHHHhcCCEEEEec
Confidence 99999988632 3334444566666655443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.3 Score=47.44 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-----ccCCeE
Q 014863 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (417)
Q Consensus 109 ~g~kkIgII-G~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-----~~ADiV 182 (417)
+| ++|.|+ |.|.+|...++-++.. |.+|++..++ .+..+.+++.|....-....+..+.+ ...|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTASR-NETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECCS-HHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 68 999999 7999999999999988 9887665543 55677888888642100011333333 248999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+-++.... .++.....++++-.++...+
T Consensus 222 ~d~~g~~~---~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 222 FCTFNTDM---YYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp EESSCHHH---HHHHHHHHEEEEEEEEESSC
T ss_pred EECCCchH---HHHHHHHHhccCCEEEEECC
Confidence 99887533 33444455666666554443
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.16 Score=48.99 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=46.7
Q ss_pred ccccccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC-C---HHhh
Q 014863 101 FNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-D---IYET 175 (417)
Q Consensus 101 f~~~~~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~-~---~~Ea 175 (417)
++.+...+++ |+|.|+| .|.+|..+++.|.+. .|++|++..|...+........++......+. + ..++
T Consensus 15 ~~~~~~~m~~-~~vlVtGatG~iG~~l~~~L~~~-----~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~ 88 (372)
T 3slg_A 15 QTQGPGSMKA-KKVLILGVNGFIGHHLSKRILET-----TDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH 88 (372)
T ss_dssp --------CC-CEEEEESCSSHHHHHHHHHHHHH-----SSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH
T ss_pred hhcCCcccCC-CEEEEECCCChHHHHHHHHHHhC-----CCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH
Confidence 5556666777 9999999 699999999999875 15788877776443222221133332111122 2 3457
Q ss_pred hccCCeEEEee
Q 014863 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 v~~ADiViLav 186 (417)
++++|+||.+.
T Consensus 89 ~~~~d~Vih~A 99 (372)
T 3slg_A 89 VKKCDVILPLV 99 (372)
T ss_dssp HHHCSEEEECB
T ss_pred hccCCEEEEcC
Confidence 78999999754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.41 Score=45.83 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchh---HHHHH-------HcCceecCCCcCC---H
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-------AAGFTEENGTLGD---I 172 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s---~~~A~-------~~G~~~~d~~~~~---~ 172 (417)
.+++ |+|.|.|. |-+|.++++.|.+. |++|++..|..... .+... ..++......+.+ .
T Consensus 24 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 96 (352)
T 1sb8_A 24 PAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 96 (352)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHH
Confidence 3566 89999997 99999999999998 99988777754321 11111 1333211111233 4
Q ss_pred HhhhccCCeEEEeec
Q 014863 173 YETISGSDLVLLLIS 187 (417)
Q Consensus 173 ~Eav~~ADiViLavp 187 (417)
.+++++.|+||.+..
T Consensus 97 ~~~~~~~d~vih~A~ 111 (352)
T 1sb8_A 97 NNACAGVDYVLHQAA 111 (352)
T ss_dssp HHHHTTCSEEEECCS
T ss_pred HHHhcCCCEEEECCc
Confidence 467789999999875
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.66 Score=46.85 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=41.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-----eEEEEecCCchh----HHHHH--HcCceec--C-CCcCCHHhhh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFTEE--N-GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~-----~Vivg~r~~~~s----~~~A~--~~G~~~~--d-~~~~~~~Eav 176 (417)
.||+||| .|.+|.+++..|... ++ .+++.+-..... .-.+. .++..+. + ....+..+++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7999999 899999999999887 44 144433211221 11222 1222100 0 0123567889
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999964
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.34 Score=47.56 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=50.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
.|+| .||++||= +++..|++..+... |.++.+...+.- ...+.....++.. ..+++|++++||+|+.
T Consensus 151 ~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy~ 219 (301)
T 2ef0_A 151 GLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALYT 219 (301)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEEE
T ss_pred CcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEEe
Confidence 5789 99999996 79999999999888 998877654421 1111111123554 5789999999999998
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
.+=
T Consensus 220 ~~~ 222 (301)
T 2ef0_A 220 DVW 222 (301)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.18 Score=52.60 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=57.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCchhHHHHHHcCceecCCCc--CCH----HhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTL--GDI----YETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~~----~Eav~~ADiV 182 (417)
+||.|||+|.||..++.-|.++. ++ +|++.+..... .+.....|+......+ .+. ++++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~-----dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKF-----DIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHB-----CCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCC-----CCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 57999999999999999998761 33 56666644322 2333334543211111 222 3456667999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|.+.++.....+++.... .|...++.+
T Consensus 88 IN~s~~~~~l~Im~acle---aGv~YlDTa 114 (480)
T 2ph5_A 88 IDVSIGISSLALIILCNQ---KGALYINAA 114 (480)
T ss_dssp EECCSSSCHHHHHHHHHH---HTCEEEESS
T ss_pred EECCccccCHHHHHHHHH---cCCCEEECC
Confidence 999998877777765432 355555554
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.14 Score=50.60 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=54.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhc-CCceEEEEecCCc--hhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEe
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~-~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLa 185 (417)
|+||+|+| .|.+|..+.+.|.+. + ..++++...+..+ +... -.|... .+.+. .+...++|+||+|
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a 72 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFS 72 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEEC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEEC
Confidence 37999999 999999999988765 0 0235544443211 1100 011110 01111 2244689999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|.....+..+.+. +.|..+++.++
T Consensus 73 ~g~~~s~~~a~~~~---~~G~~vId~s~ 97 (336)
T 2r00_A 73 AGGELSAKWAPIAA---EAGVVVIDNTS 97 (336)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCchHHHHHHHHHH---HcCCEEEEcCC
Confidence 99988777776543 46777777665
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=92.42 E-value=0.3 Score=47.24 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=55.0
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc
Q 014863 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 99 ~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ 178 (417)
+.|....+..+| +||++||+ + +.+.+.+ .. +.++.+.+++.. .|..+ ....++++++
T Consensus 130 d~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~ 186 (270)
T 2h1q_A 130 DPFIMSQNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILPE 186 (270)
T ss_dssp CHHHHTTTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGG
T ss_pred cHHHHHHhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhhc
Confidence 455544466788 99999999 4 5666644 45 678888877643 24433 2346678999
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
||+|++. --...-..++.|..+.++++.++
T Consensus 187 aD~viiT-GsTlvN~Ti~~lL~~~~~a~~vv 216 (270)
T 2h1q_A 187 CDYVYIT-CASVVDKTLPRLLELSRNARRIT 216 (270)
T ss_dssp CSEEEEE-THHHHHTCHHHHHHHTTTSSEEE
T ss_pred CCEEEEE-eeeeecCCHHHHHHhCccCCeEE
Confidence 9998864 33333345556666665554444
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.15 Score=50.41 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=59.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC---HHhhhccCCeEEE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~Eav~~ADiViL 184 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|.... + ..+ .+++....|+||-
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~~-~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEec--cccHHHHHHhhcCCCEEEE
Confidence 56 8999999999999999988888 9887655544 455777888886420 1 111 1222356899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.... .++.....++++-.++..
T Consensus 264 ~~g~~~---~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 264 TVAAPH---NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CCSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred CCCCHH---HHHHHHHHhccCCEEEEe
Confidence 988532 233445566666655544
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.14 Score=53.39 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=34.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (417)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|+.++..+.+.+.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~ 408 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIG 408 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTT
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcC
Confidence 4677 8999999999999999999999 9888888887555455555543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.21 Score=48.52 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc------cCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~------~AD 180 (417)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..++ .+..+.+++.|.... +.. .+..+.+. ..|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 56 89999998 99999999999988 9988766654 445677888776421 111 23333321 589
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++... .++.....++++-.++..
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 999998864 344555667776665544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.4 Score=46.53 Aligned_cols=92 Identities=17% Similarity=0.057 Sum_probs=61.7
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cCCHHhhhc-----cCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~Eav~-----~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++.. ..+.+++.|.... |-. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~~-~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGEG-KEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSTT-HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCHH-HHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 56 89999999 89999999999988 988877666543 4567777775310 111 123334443 479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+||.++... +.++...+.|+++-.++..
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEEC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 999888742 3456666777776655544
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.28 Score=50.50 Aligned_cols=94 Identities=17% Similarity=0.263 Sum_probs=67.2
Q ss_pred cccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-c-CceecCCCcCCHH
Q 014863 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIY 173 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~-G~~~~d~~~~~~~ 173 (417)
..++| +||+|.|+- +-...++..|.+. |.+|.+++..- .+.+.. . ++.. +.+.+
T Consensus 318 ~~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~---~~~~~~~~~~~~~----~~~~~ 383 (446)
T 4a7p_A 318 GDVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEG---VEQASKMLTDVEF----VENPY 383 (446)
T ss_dssp SCCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSC---HHHHGGGCSSCCB----CSCHH
T ss_pred ccCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCC---CHhHHHhcCCceE----ecChh
Confidence 35788 999999997 7788999999998 99887765432 122222 2 4442 46788
Q ss_pred hhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 014863 174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~~-Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|+++++|.|+++|.-....+ =++.+...|+. .+|+|.-++
T Consensus 384 ~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~ 424 (446)
T 4a7p_A 384 AAADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNI 424 (446)
T ss_dssp HHHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCC
T ss_pred HHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCC
Confidence 99999999999998766543 24567777754 577776654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.21 Score=47.99 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=64.5
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC-HHhhhccCCeEEE
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~-~~Eav~~ADiViL 184 (417)
-.| .+|.|+| .|.+|...++-++.. |.+|++..+ .+..+.+++.|.... +....+ ..+.+...|+|+-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~~--~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTAS--KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEEC--HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEec--cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 457 8999997 999999999999988 988765543 234778888887421 111223 5566678999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++..... ......++++-.++...
T Consensus 222 ~~g~~~~----~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 222 LVGGDVG----IQSIDCLKETGCIVSVP 245 (321)
T ss_dssp SSCHHHH----HHHGGGEEEEEEEEECC
T ss_pred CCCcHHH----HHHHHhccCCCEEEEeC
Confidence 9986433 45566777776666544
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.35 Score=48.52 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHc--------CceecCCCcCCHH
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAA--------GFTEENGTLGDIY 173 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~--------G~~~~d~~~~~~~ 173 (417)
.|+| .||+|||=+ ++..|++..+... |.+|.+..... +...+.+.+. ++.. ..+++
T Consensus 185 ~l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~ 253 (353)
T 3sds_A 185 GLEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPE 253 (353)
T ss_dssp SCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHH
T ss_pred ccCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHH
Confidence 3689 999999965 6888888888777 99887765432 2223333332 3333 56899
Q ss_pred hhhccCCeEEEee
Q 014863 174 ETISGSDLVLLLI 186 (417)
Q Consensus 174 Eav~~ADiViLav 186 (417)
|++++||+|+.-+
T Consensus 254 eav~~aDVvytd~ 266 (353)
T 3sds_A 254 VAVKDADVIVTDT 266 (353)
T ss_dssp HHTTTCSEEEECC
T ss_pred HHhcCCCEEEeCC
Confidence 9999999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.11 Score=50.76 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcC-CHHhhh-ccCCeEEEe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~-~~~Eav-~~ADiViLa 185 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ .+..+.+++.|.... +.... +..+.+ ...|+||-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 56 8999999999999999999888 9887665554 445677888886420 10011 222333 368999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+.... ...++.....++++-.++..
T Consensus 251 ~g~~~-~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 251 ASSLT-DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CSCST-TCCTTTGGGGEEEEEEEEEC
T ss_pred CCCCc-HHHHHHHHHHhcCCCEEEEe
Confidence 97510 01233445667776665544
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.34 Score=46.88 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=61.9
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccC
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~A 179 (417)
-+| ++|.|+|.| .+|...++-++.. |.+|++..++. +..+.+++.|.... +....+..+.+ ...
T Consensus 143 ~~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 143 QRN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRNN-KHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 356 899999998 8999999999888 99887766553 45677777776421 11112333332 258
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++......+. ...++++-.++..+
T Consensus 215 Dvvid~~g~~~~~~~----~~~l~~~G~iv~~G 243 (340)
T 3gms_A 215 DAAIDSIGGPDGNEL----AFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEESSCHHHHHHH----HHTEEEEEEEEECC
T ss_pred cEEEECCCChhHHHH----HHHhcCCCEEEEEe
Confidence 999999886554333 35677766665543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.16 Score=49.97 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceec-CCCcCC---HHhhhccCCeEE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-d~~~~~---~~Eav~~ADiVi 183 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..+.. ...+.+. +.|.... + ..+ ..++....|+||
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~-~~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTSP-SKKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGII 256 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCG-GGHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEE
Confidence 67 8999999999999999999988 98877666553 3455555 6775320 1 112 223335689999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDA-AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~-a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-++... .....+ +.|+++-.++..
T Consensus 257 d~~g~~~~~~~~~----~~l~~~G~iv~~ 281 (366)
T 1yqd_A 257 DTVSAVHPLLPLF----GLLKSHGKLILV 281 (366)
T ss_dssp ECCSSCCCSHHHH----HHEEEEEEEEEC
T ss_pred ECCCcHHHHHHHH----HHHhcCCEEEEE
Confidence 998854 333333 445555555433
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.13 Score=51.00 Aligned_cols=68 Identities=24% Similarity=0.160 Sum_probs=44.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCC---HHhhhccCCe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADi 181 (417)
..+.| +||+|||.|.+|..+++.+++. |+++++.+... ......+ +.... ....+ +.+.++++|+
T Consensus 10 ~~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dv 78 (389)
T 3q2o_A 10 IILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDV 78 (389)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSE
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCE
Confidence 34678 9999999999999999999998 99987765432 1111111 11111 11223 4467788898
Q ss_pred EEE
Q 014863 182 VLL 184 (417)
Q Consensus 182 ViL 184 (417)
|..
T Consensus 79 I~~ 81 (389)
T 3q2o_A 79 VTY 81 (389)
T ss_dssp EEE
T ss_pred eee
Confidence 754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.37 Score=46.27 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=61.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCc-CCHHhhhc-----cCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETIS-----GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~~~~Eav~-----~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.+++.|.... |... .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 56 89999998 99999999999988 9988776654 344566677775210 1111 23333332 479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+||.++... .++.....++++-.++..+
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGGE----FLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCHH----HHHHHHTTEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHHhcCCEEEEEe
Confidence 999888753 3556667777776665443
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.45 Score=47.65 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=54.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec-C-CchhHHHHHHc----C------------ceecCC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARAA----G------------FTEENG 167 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~-~~~s~~~A~~~----G------------~~~~d~ 167 (417)
+....|.||||+|+|.+|.-+.+.|.+. .+++|+..++ . +........+. | +.. ++
T Consensus 12 ~~~~~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v-~g 85 (354)
T 3cps_A 12 ENLYFQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCI-NG 85 (354)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEE-TT
T ss_pred cCcCcceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEE-CC
Confidence 3444557999999999999999988765 1467655554 2 22111121111 1 000 00
Q ss_pred ----C--cCCHHhhh---ccCCeEEEeecchhHHHHHHHHHhcCCCCc--EEEEecc
Q 014863 168 ----T--LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (417)
Q Consensus 168 ----~--~~~~~Eav---~~ADiViLavpd~a~~~Vl~eI~p~Lk~Ga--iL~~a~G 213 (417)
. ..++++.- .++|+||.|+|.....+..+ .+++.|. +|++..+
T Consensus 86 ~~i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 86 KVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp EEEEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred eEEEEEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 0 11333321 47999999999877766554 4566677 6665543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.37 Score=48.72 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=55.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-ceEE-EE-ec-CCchhHHHH-------------HHcCceecCCCcCCHH
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVK-VG-LR-KGSRSFAEA-------------RAAGFTEENGTLGDIY 173 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vi-vg-~r-~~~~s~~~A-------------~~~G~~~~d~~~~~~~ 173 (417)
.|||||| .|..|.-+.+-|.+. . .++. +. .+ ...+..... .+.-+.. .+.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~ 88 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPE 88 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSC
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchh
Confidence 6899999 699999999877654 3 3543 22 22 222333221 1111111 1222
Q ss_pred hhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+.+.++|+||+|+|.....++.+++. +.|..|+|.++
T Consensus 89 ~~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa 125 (381)
T 3hsk_A 89 GNFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAK 125 (381)
T ss_dssp TTGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCS
T ss_pred hhcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCC
Confidence 14678999999999998888887664 46887887765
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.36 Score=49.52 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEc-----cc---chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcC
Q 014863 107 AFNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 107 ~l~g~kkIgIIG-----~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~ 170 (417)
.|+| .||+||| +| ++..|++..+... |.+|.+....+ +...+. +.+.|.... ...
T Consensus 185 ~l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~--~~~ 255 (418)
T 2yfk_A 185 NLKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFT--KTN 255 (418)
T ss_dssp GGTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEE--EES
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence 3889 9999997 24 4999999999887 99887766542 222232 344664210 156
Q ss_pred CHHhhhccCCeEEEee
Q 014863 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 ~~~Eav~~ADiViLav 186 (417)
+++|++++||+|+.-+
T Consensus 256 d~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 256 SMAEAFKDADVVYPKS 271 (418)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhcCCCEEEEcc
Confidence 8999999999999865
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.24 Score=46.08 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=45.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhcc-CCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISG-SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~-ADiViLavp 187 (417)
|||.|+|.|.+|..+++.|.+. |++|++..|..++. ..++......+.+ ..+++++ +|+||.+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 7999999999999999999999 99988877764431 1222211111222 3345666 999998875
Q ss_pred c
Q 014863 188 D 188 (417)
Q Consensus 188 d 188 (417)
+
T Consensus 73 ~ 73 (286)
T 3gpi_A 73 A 73 (286)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=91.88 E-value=0.15 Score=52.11 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=31.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~Vivg~r~ 149 (417)
|+| ++|+|+|+|++|..+|+.|+. . |.+|+...++
T Consensus 210 l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 210 LKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp STT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred cCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 899 999999999999999999998 7 9988766554
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.3 Score=48.07 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.|+| .||++||=| ++..|++..+... |.++.+.....-.. +. .+.|. ..+++|++++||+|+
T Consensus 144 ~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~~-~~~g~------~~d~~eav~~aDvvy 208 (304)
T 3r7f_A 144 TFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-EE-NTFGT------YVSMDEAVESSDVVM 208 (304)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-TT-CSSCE------ECCHHHHHHHCSEEE
T ss_pred CCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-ch-hhcCc------cCCHHHHhCCCCEEE
Confidence 5789 999999975 6999999999888 99887765432111 11 12342 458999999999998
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 209 t~~ 211 (304)
T 3r7f_A 209 LLR 211 (304)
T ss_dssp ECC
T ss_pred ecc
Confidence 854
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.32 Score=47.42 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCCe
Q 014863 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (417)
Q Consensus 109 ~g~kkIgII-G~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~ADi 181 (417)
.| ++|.|+ |.|.+|.+.++.++.. |.+|++..++ .+..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 56 899999 6899999999999988 9987766654 445677777776421 111123333332 5899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+-++.... +......++++-.++..+
T Consensus 239 vid~~g~~~----~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGAAY----FERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCGGG----HHHHHHTEEEEEEEEECC
T ss_pred EEECCCHHH----HHHHHHHhccCCEEEEEE
Confidence 999998653 444455666666655443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.98 Score=42.77 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----C----ceecCCCcCCHHhhhccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G----FTEENGTLGDIYETISGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G----~~~~d~~~~~~~Eav~~A 179 (417)
-.| ++|.-||||. |.- +..|.+.. |.+| ++.+.+....+.|++. | +... ..+..+.-...
T Consensus 89 ~~~-~~vLDiGcG~-G~~-~~~la~~~-----~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~f 156 (318)
T 2fk8_A 89 KPG-MTLLDIGCGW-GTT-MRRAVERF-----DVNV-IGLTLSKNQHARCEQVLASIDTNRSRQVL---LQGWEDFAEPV 156 (318)
T ss_dssp CTT-CEEEEESCTT-SHH-HHHHHHHH-----CCEE-EEEESCHHHHHHHHHHHHTSCCSSCEEEE---ESCGGGCCCCC
T ss_pred CCc-CEEEEEcccc-hHH-HHHHHHHC-----CCEE-EEEECCHHHHHHHHHHHHhcCCCCceEEE---ECChHHCCCCc
Confidence 356 8999999998 333 33333321 5555 5666655555555542 3 2211 23444433568
Q ss_pred CeEEEe-----ecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 180 DLVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 180 DiViLa-----vpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|+|+.. +++.....+++++...|+||-.+++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987 6666677899999999999887653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.59 Score=47.85 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=65.8
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-------------Cce
Q 014863 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GFT 163 (417)
Q Consensus 107 ~l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------G~~ 163 (417)
.++| +||+|+|+- +-...++..|.+. |.+|.+++..-.. .+..... ++.
T Consensus 326 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 397 (467)
T 2q3e_A 326 TVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLVT 397 (467)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHEE
T ss_pred ccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCcee
Confidence 4788 999999986 3677888888888 9988776543221 1111111 233
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
. ..+..|++++||.|+++|.-.....+ ++.+...|+...+|+|.-++
T Consensus 398 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 445 (467)
T 2q3e_A 398 I----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRV 445 (467)
T ss_dssp E----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCT
T ss_pred e----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCc
Confidence 2 34788899999999999998777543 45677778765557777654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.22 Score=46.87 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=45.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc--CCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~~~Eav~~ADiViLavp 187 (417)
|+|.|.| .|.+|.++++.|.+. |++|++..|. ....+ .. ++......+ .+..++++++|+||.+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 7999999 699999999999999 9998887776 32222 11 433211111 124567889999998864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=91.59 E-value=1 Score=39.65 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=58.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCc---eecCCCcCCHHh---hhc
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF---TEENGTLGDIYE---TIS 177 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~---~~~d~~~~~~~E---av~ 177 (417)
-.| .+|.-||+|. | .++..|.+. +.+.+| ++.+.+....+.|++ .|+ ... ..+..+ ...
T Consensus 39 ~~~-~~vLDiG~G~-G-~~~~~la~~----~~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~ 107 (204)
T 3e05_A 39 QDD-LVMWDIGAGS-A-SVSIEASNL----MPNGRI-FALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLP 107 (204)
T ss_dssp CTT-CEEEEETCTT-C-HHHHHHHHH----CTTSEE-EEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSC
T ss_pred CCC-CEEEEECCCC-C-HHHHHHHHH----CCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCC
Confidence 356 8999999997 3 344455554 002455 566665555555544 232 211 122222 225
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
..|+|++..+.....++++++...|+||-.+++.
T Consensus 108 ~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 108 DPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 6899999887777778999999999998876644
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.19 Score=49.01 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=28.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
||||+|||.|..|..+++.+++. |+++++.+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~ 32 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDK 32 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 79999999999999999999999 998877654
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.4 Score=47.84 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.|+| .||++|| .+++..|++..+... |.++.+...++ ....+. +.+.|.... ...+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 5889 9999999 468899999999887 99887765432 222222 344564321 146788 999
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|+.-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999643
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.21 Score=47.67 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=50.7
Q ss_pred cccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcCC---HHhhhc-
Q 014863 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS- 177 (417)
Q Consensus 104 ~~~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~---~~Eav~- 177 (417)
.++.++| |+|.|.|. |-+|.++++.|.+. |++|++..|......+.... .++......+.+ ..++++
T Consensus 14 ~~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 14 LVPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp CCSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 3678899 99999996 99999999999998 99988877743321110000 122110111333 345677
Q ss_pred -cCCeEEEeec
Q 014863 178 -GSDLVLLLIS 187 (417)
Q Consensus 178 -~ADiViLavp 187 (417)
+.|+||.+..
T Consensus 87 ~~~D~vih~A~ 97 (330)
T 2pzm_A 87 FKPTHVVHSAA 97 (330)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 8999998874
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.25 Score=47.91 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=42.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc--hhHHHHH--Hc---CceecCC-CcCCHHhh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEAR--AA---GFTEENG-TLGDIYET 175 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~--~s~~~A~--~~---G~~~~d~-~~~~~~Ea 175 (417)
+||.|+|. |.+|.+++..|... |+ +|++.++... +....+. .. .+.. |- ...+..++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~-di~~~~~~~~a 77 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA-GLEATDDPKVA 77 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE-EEEEESCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC-CeEeccChHHH
Confidence 68999996 99999999999887 75 6666554321 1111111 11 1110 00 02456788
Q ss_pred hccCCeEEEee
Q 014863 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 v~~ADiViLav 186 (417)
++++|+||.+.
T Consensus 78 ~~~~D~Vih~A 88 (327)
T 1y7t_A 78 FKDADYALLVG 88 (327)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 99999999874
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=91.44 E-value=0.5 Score=46.55 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=51.8
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.|+| .||++||= +++..|++..+... .|.+|.+...+ +....+.+++.|.... ...+++|++++|
T Consensus 151 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (310)
T 3csu_A 151 RLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 222 (310)
T ss_dssp CSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTTC
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 5789 99999997 58999999888653 17787776543 2233456667775321 146899999999
Q ss_pred CeEEEee
Q 014863 180 DLVLLLI 186 (417)
Q Consensus 180 DiViLav 186 (417)
|+|+...
T Consensus 223 Dvvyt~~ 229 (310)
T 3csu_A 223 DILYMTR 229 (310)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999865
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.35 Score=46.10 Aligned_cols=68 Identities=29% Similarity=0.235 Sum_probs=44.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCe
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADi 181 (417)
+.+++ |+|.|.|. |-+|.++++.|.+. |++|++..|.... .++......+.+ ..++++++|+
T Consensus 15 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (347)
T 4id9_A 15 VPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSA 80 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSE
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCE
Confidence 56777 99999996 99999999999999 9998877776433 222211111223 4567889999
Q ss_pred EEEeec
Q 014863 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||.+..
T Consensus 81 vih~A~ 86 (347)
T 4id9_A 81 VLHLGA 86 (347)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998754
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.44 Score=49.50 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=65.0
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..-.. . .++.. ..+.++++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~~----~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVEI----SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBCE----ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcce----ecCHHHHH
Confidence 5788 999999973 3467888888888 9988776543221 1 11221 35788999
Q ss_pred ccCCeEEEeecchhHHH-HHHHHHhcCC-CCcEEEEeccc
Q 014863 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGF 214 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~-Vl~eI~p~Lk-~GaiL~~a~G~ 214 (417)
++||+|+++|.-....+ -++.+...|+ ++.+|+|.-++
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~ 452 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNV 452 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSC
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCC
Confidence 99999999999777654 2456777777 36788887765
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.44 Score=46.48 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=59.8
Q ss_pred cCCCCEEEEEcccchHHHH-HHHH-HhhhhhhcCCce-EEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhc----c
Q 014863 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS----G 178 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~Ai-A~~L-r~s~~~~~~G~~-Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~----~ 178 (417)
+++ .+|.|+|.|.+|... ++-+ +.. |.+ |++..+..+ ...+.+++.|....+....+..+ +. .
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg 242 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQ 242 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCC
Confidence 456 899999999999999 8887 777 886 766555433 04678888897531111112223 32 4
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.|+||-++.... .++.....++++-.++..+
T Consensus 243 ~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 243 MDFIYEATGFPK---HAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCChH---HHHHHHHHHhcCCEEEEEe
Confidence 799999987542 3444445566665555443
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.15 Score=50.47 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=52.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLavp 187 (417)
+||+|+| .|.+|..+.+.|.++ .-..++++...+... +... -.|... .+.+. .+...++|+||+|+|
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~---~~~~~elv~i~s~~~~g~~~~---~~g~~i---~~~~~~~~~~~~~DvV~~a~g 77 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER---DFPLHRLHLLASAESAGQRMG---FAESSL---RVGDVDSFDFSSVGLAFFAAA 77 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT---TCCCSCEEEEECTTTTTCEEE---ETTEEE---ECEEGGGCCGGGCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC---CCCcEEEEEEecCCCCCCccc---cCCcce---EEecCCHHHhcCCCEEEEcCC
Confidence 6899999 899999999998755 000224443332211 1100 012111 01111 233578999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
.....+..+.+. +.|..+++.++
T Consensus 78 ~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 78 AEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTC
T ss_pred cHHHHHHHHHHH---HCCCEEEEeCC
Confidence 887777776543 45776666554
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=91.34 E-value=0.48 Score=44.17 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.5
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+..
T Consensus 3 ~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 3 NLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKER 43 (256)
T ss_dssp CCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGG
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 4789 999999975 3999999999999 999988887643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.25 Score=47.26 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=58.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++.. +.+..+.+++.|.... +.+.+++-...|+|+-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 57 8999999999999999999988 98876655 3456788888897531 22322222468999988875
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEec
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
... ......++++-.++...
T Consensus 210 ~~~----~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 QNA----AALVPSLKANGHIICIQ 229 (315)
T ss_dssp --------TTGGGEEEEEEEEEEC
T ss_pred hhH----HHHHHHhcCCCEEEEEe
Confidence 433 34456677766655443
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.49 Score=48.19 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=50.4
Q ss_pred cccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCceEEEEecC----CchhHH----HHHHcCceecCCCc
Q 014863 106 DAFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAGFTEENGTL 169 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-----G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~----~A~~~G~~~~d~~~ 169 (417)
+.|+| +||+|||. | ++..|++..+... |++|.+.... .+...+ .+.+.|.... .+
T Consensus 187 ~~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~ 257 (399)
T 3q98_A 187 ENLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QV 257 (399)
T ss_dssp GGGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EE
T ss_pred cccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EE
Confidence 35788 99999984 4 7889999888877 9988776543 222222 2345564321 15
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|+.-+
T Consensus 258 ~d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 258 TSMEEAFKDADIVYPKS 274 (399)
T ss_dssp SCHHHHHTTCSEEEECC
T ss_pred cCHHHHhCCCCEEEecC
Confidence 78999999999998765
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=1.4 Score=43.16 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=61.2
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~AD 180 (417)
-.| .+|.|+|. |.+|...++-++.. |.+|++.. +.+..+.+++.|.... +....+..+.+. ..|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~--~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC--SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE--CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe--CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 467 99999999 89999999999888 98876553 3456788999987421 111123333332 389
Q ss_pred eEEEeecchhHHHHHHHHHhcC-CCCcEEEEec
Q 014863 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~L-k~GaiL~~a~ 212 (417)
+|+-++.... .++.....+ +++-.++..+
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESS
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEe
Confidence 9999998643 233334455 4655555554
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.46 Score=47.73 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.|+| .||+||| .+++..|++..+... |.++.+..... ....+. +.+.|.... ...+++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5789 9999999 568999999999887 99887765432 222222 344564321 146788 999
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
++|+|+.-+
T Consensus 220 ~aDVVytd~ 228 (355)
T 4a8p_A 220 GADFLYTDV 228 (355)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecc
Confidence 999999633
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=91.07 E-value=0.23 Score=44.76 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=48.2
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCc---CCHHhhhccCCe
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~---~~~~Eav~~ADi 181 (417)
+++ |+|.|.| .|-+|.++++.|.+. |+ +|++..|...+..+.. ..++......+ .+.++++++.|+
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 567 8999999 699999999999999 98 8888777643221111 11221100011 234567788999
Q ss_pred EEEeecc
Q 014863 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
||.+...
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998754
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.91 Score=47.14 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=49.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHH---h-hhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIY---E-TISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~---E-av~~ADiViLav 186 (417)
+.|.|+|+|..|..+++.|.+. |+++++.+. +.+..+.+.+. |+...-+...+.+ + -+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid~-~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVTD-NYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEES-CHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 5799999999999999999988 888776554 45556667666 7643212222322 1 3688999998 5
Q ss_pred cchhH
Q 014863 187 SDAAQ 191 (417)
Q Consensus 187 pd~a~ 191 (417)
+++..
T Consensus 200 ~~D~~ 204 (565)
T 4gx0_A 200 LSDPD 204 (565)
T ss_dssp SCHHH
T ss_pred CCcHH
Confidence 55444
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=0.39 Score=46.04 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ ....+.+++.|.... |....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 46 8999999 799999999999998 9988766654 444566666665310 11111222222 1479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+||.++... .++...+.++++-.++..+
T Consensus 212 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 212 VVYDSVGRD----TWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEECSCGG----GHHHHHHTEEEEEEEEECC
T ss_pred EEEECCchH----HHHHHHHHhcCCCEEEEEe
Confidence 999998743 3445556666666555443
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.84 Score=43.09 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=44.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhH---HHHHHcC-ceecCCCcCC---HHhhhcc--C
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S 179 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~---~~A~~~G-~~~~d~~~~~---~~Eav~~--A 179 (417)
||+|.|.| .|-+|.++++.|.+. |++|++..|.. .... +.....+ +......+.+ .++++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 68999999 699999999999998 99988776532 1111 1111122 2211111223 3456777 9
Q ss_pred CeEEEeec
Q 014863 180 DLVLLLIS 187 (417)
Q Consensus 180 DiViLavp 187 (417)
|+||.+..
T Consensus 75 d~vih~A~ 82 (347)
T 1orr_A 75 DSCFHLAG 82 (347)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998875
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.53 Score=45.53 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=59.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~A 179 (417)
-.| .+|.|+|.|.+|...++-++.. | .+|++..+ +.+..+.+++.|.... +. ..+..+.+ ...
T Consensus 170 ~~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~~~~-~~~~~~~~~~lGa~~~i~~-~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 170 GPG-STAVVIGVGGLGHVGIQILRAV------SAARVIAVDL-DDDRLALAREVGADAAVKS-GAGAADAIRELTGGQGA 240 (345)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEES-CHHHHHHHHHTTCSEEEEC-STTHHHHHHHHHGGGCE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-CHHHHHHHHHcCCCEEEcC-CCcHHHHHHHHhCCCCC
Confidence 356 8999999999999988888766 5 46655444 4556788889886421 10 01222222 168
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++.... .++.....++++-.++..+
T Consensus 241 d~v~d~~G~~~---~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 241 TAVFDFVGAQS---TIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEESSCCHH---HHHHHHHHEEEEEEEEECS
T ss_pred eEEEECCCCHH---HHHHHHHHHhcCCEEEEEC
Confidence 99999998753 3444445566666665443
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.82 Score=44.85 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=60.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHh-hhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCC
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~-s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~AD 180 (417)
+| .+|.|+| .|.+|...++-++. . |.+|++..+ +.+..+.+++.|.... +. ..+..+.+. ..|
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~~~-~~~~~~~~~~lGad~vi~~-~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIATAS-RPETQEWVKSLGAHHVIDH-SKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEECS-SHHHHHHHHHTTCSEEECT-TSCHHHHHHTTCSCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEEeC-CHHHHHHHHHcCCCEEEeC-CCCHHHHHHHhcCCCce
Confidence 57 8999999 99999999988886 5 677765544 4555788888886421 11 123333332 589
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++... ..++.....++++-.++..
T Consensus 242 vvid~~g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTHTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSCHH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCCch---hhHHHHHHHhcCCCEEEEE
Confidence 999988743 2344455567777666544
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.31 Score=47.51 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHH-HcCceecCCCcCC---HHhhhccC
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~---~~Eav~~A 179 (417)
..+++ |+|.|.| .|.+|.++++.|.+. | ++|++..|......+... ..++......+.+ ..++++++
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 35677 8999999 599999999999999 9 888877665332111110 1222211111233 34567789
Q ss_pred CeEEEeecc
Q 014863 180 DLVLLLISD 188 (417)
Q Consensus 180 DiViLavpd 188 (417)
|+||.+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999988653
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.79 E-value=1.1 Score=46.14 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCch--hHHHHHH-cC-------ceecC
Q 014863 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARA-AG-------FTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~--s~~~A~~-~G-------~~~~d 166 (417)
.++| +||+|.|+ .+-...++..|.+. |.+|.+++..-.. ....... .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 4688 99999997 35667788888887 9888776543221 1112221 11 222
Q ss_pred CCcCCHHhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+..|+++++|.|+++|.-.....+ ++.+...|+...+|+|.-++
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 449 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLI 449 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSC
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCC
Confidence 35778899999999999998776543 55677778776678887664
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.51 Score=45.47 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=60.8
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceec-CCC-cCCHHhhhc-----cC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT-LGDIYETIS-----GS 179 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-d~~-~~~~~Eav~-----~A 179 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.+. +.|.... |.. ..+..+.+. ..
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGS-KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 56 89999997 99999999999988 9887766654 44456666 5675310 111 012333332 58
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++... .++.....++++-.++..+
T Consensus 227 d~vi~~~g~~----~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGGK----MLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCHH----HHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCHH----HHHHHHHHHhcCCEEEEEc
Confidence 9999998742 4556667777776666543
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=90.59 E-value=0.15 Score=51.22 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=53.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecC--CchhHHHHHHcCceecCCCcCC-HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK--GSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~-~~Eav~~ADiViL 184 (417)
+||+||| .|..|.-+.+-|.+. ++ ++...... ..+... -.|... .+.+ ..+.+.++|+||+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~---~~~~~~~~~~~~~Dvvf~ 70 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDI---TIEETTETAFEGVDIALF 70 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEECCTTTTTTCSEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCc---eEeeCCHHHhcCCCEEEE
Confidence 6899999 899999999988775 44 33322211 111111 011110 0111 1234678999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+|.....+..+.+. +.|..|++.++
T Consensus 71 a~~~~~s~~~a~~~~---~~G~~vIDlSa 96 (366)
T 3pwk_A 71 SAGSSTSAKYAPYAV---KAGVVVVDNTS 96 (366)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCChHhHHHHHHHHH---HCCCEEEEcCC
Confidence 999888887777654 46777887765
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.37 Score=49.93 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=40.0
Q ss_pred CEEEEEcccchHHHH--HHHHHhhhhhhcCCceEEEEecCCchhHHH--------HHHcCceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQ--AQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai--A~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~--------A~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|+.|.+. ...|....+=.+.+.++++.+ .+....+. +...|....-...+|.+|++++||+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~D-i~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~ 79 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMD-VHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADF 79 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEEC-SCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEEC-CCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCE
Confidence 589999999988553 333433210011123555544 43322211 1223321100124688999999999
Q ss_pred EEEee
Q 014863 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||+.+
T Consensus 80 Vi~~~ 84 (477)
T 3u95_A 80 IINTA 84 (477)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99986
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.14 Score=51.98 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=47.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+++ |+|.|||.|-.|.+.|+-|.+. |++|.+.+.+.... ..... .|+....+. ...+.++++|+||+..
T Consensus 3 ~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 3 YQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVASP 72 (439)
T ss_dssp CTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEECT
T ss_pred CCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeCC
Confidence 577 9999999999999999999888 99988777653321 11122 466531011 1256677899999873
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.49 Score=45.51 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=59.0
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.+++.|.... |....+..+.+ ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVST-EEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 46 89999995 99999999999988 9988776665 434566666664310 11111222222 2579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+||.++... .++.....++++-.++..+
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 217 VVYDSIGKD----TLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEECSCTT----THHHHHHTEEEEEEEEECC
T ss_pred EEEECCcHH----HHHHHHHhhccCCEEEEEe
Confidence 999988763 3445556666666555443
|
| >3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.65 Score=44.92 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=56.1
Q ss_pred cccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc
Q 014863 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 98 ~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.+.|.......+| +||++||+- .....+++. +.++.|..++.. .|..+ ....+++++
T Consensus 129 ~d~~~~~~~~~~g-~kV~vIG~f----P~i~~~~~~------~~~l~V~E~~p~--------~g~~p----~~~~~~~lp 185 (270)
T 3l5o_A 129 NDPFIMSQNEVKG-KKVGVVGHF----PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILP 185 (270)
T ss_dssp CCHHHHTTTTTTT-SEEEEESCC----TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGG
T ss_pred cCchhhhhcccCC-CEEEEECCc----hhHHHHHhc------CCCEEEEECCCC--------CCCCC----hhHHHHhhc
Confidence 3455555577889 999999974 345567777 778888777532 24332 234567899
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+||+|++.- -.-.-..++.|..+.++...++
T Consensus 186 ~~D~viiTg-stlvN~Tl~~lL~~~~~a~~vv 216 (270)
T 3l5o_A 186 ECDYVYITC-ASVVDKTLPRLLELSRNARRIT 216 (270)
T ss_dssp GCSEEEEET-HHHHHTCHHHHHHHTTTSSEEE
T ss_pred cCCEEEEEe-ehhhcCCHHHHHhhCCCCCEEE
Confidence 999988653 2233345556666666655444
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.33 E-value=0.49 Score=46.68 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceec-CCC---cCCHHhhh------c
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI------S 177 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~-d~~---~~~~~Eav------~ 177 (417)
.| .+|.|+|.|.+|...++-++.. | .+|++..++ .+..+.+++.|.... +.. ..+..+.+ .
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 195 AG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGS-PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp BT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCceEEEEcCC-HHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCC
Confidence 57 8999999999999999999888 9 487766554 455778888886420 100 00111222 1
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
..|+||-++.... .++.....++++-.++..
T Consensus 267 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 267 GADFILEATGDSR---ALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp CEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCcEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5799999987432 233344455665555543
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=1.3 Score=43.88 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=54.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhH---HHHHHc-
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA- 160 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~---~~A~~~- 160 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.+... .+.. +...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 467888 9999999999999999999999 87 555553210 1111 111121
Q ss_pred -Cceec--CCCc-CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~~--d~~~-~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
++... ...+ ....+.+++.|+||.++-+......+.+..
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~ 146 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC 146 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 22110 0001 123567899999999987666665665543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.26 E-value=1.4 Score=45.28 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=45.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||.|.| .|.+|.++++.|.+. |++|++..|...+. ..+.. |- .....+++.++|+||.+..
T Consensus 148 m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d~-~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 148 LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-DP-LNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-CT-TSCCTTTTTTCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-cc-cchhHHhcCCCCEEEECCC
Confidence 8999999 799999999999999 99988877764431 11221 11 1234567889999998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=90.24 E-value=1.1 Score=43.47 Aligned_cols=93 Identities=9% Similarity=-0.017 Sum_probs=57.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCc-----CCHHhhh-----
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTL-----GDIYETI----- 176 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~-----~~~~Eav----- 176 (417)
-.| .+|.|+|.|.+|...++-++.. |.+ |++..++ ++..+.+++.+-...+... .+..+.+
T Consensus 178 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLG-DPVLICGAGPIGLITMLCAKAA------GACPLVITDID-EGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEEESC-HHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhchhcccccccccchHHHHHHHHHHhC
Confidence 357 8999999999999999999888 986 6554443 4556677665211000000 1112222
Q ss_pred -ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 177 -SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 -~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
...|+|+-++.... .++.....++++-.++..
T Consensus 250 g~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 250 GIEPAVALECTGVES---SIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SCCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 25899999988642 344445567777666544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.38 Score=44.43 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=32.9
Q ss_pred cccCCCCEEEEEcc-cc-hHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 106 DAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
..++| |++.|.|. |. +|.++++.|.+. |.+|++..|...
T Consensus 18 ~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~~ 58 (266)
T 3o38_A 18 GLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHER 58 (266)
T ss_dssp STTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCHH
Confidence 34778 99999998 85 999999999999 999888777643
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.95 E-value=1.7 Score=42.48 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=61.9
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh---ccCCeE
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav---~~ADiV 182 (417)
-.| ++|.|+| .|.+|...++-++.. |.+|++.. . ++..+.+++.|.... +....+..+.+ ...|+|
T Consensus 182 ~~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 182 CTG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVC-S-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEE
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEe-C-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEE
Confidence 357 8999999 799999999999888 88876654 3 345777888886420 11112233333 358999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|-++.... ..+......++++-.++..++
T Consensus 253 id~~g~~~--~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 253 LDNVGGST--ETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp EESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred EECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence 98887542 123445566777766665543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.88 E-value=1.4 Score=42.85 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=60.4
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCch---hHHHHHHcCceecCCCcCCH--------Hhhh
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDI--------YETI 176 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~d~~~~~~--------~Eav 176 (417)
.| .+|.|+|. |.+|...++-++.. |.++++..+.+.+ ..+.+++.|... +.+. .+..
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~----vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEH----VITEEELRRPEMKNFF 235 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSE----EEEHHHHHSGGGGGTT
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcE----EEecCcchHHHHHHHH
Confidence 56 89999998 99999999988888 9877666654332 346777888642 1121 1222
Q ss_pred c---cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 177 S---GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~---~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
. ..|+||-++..... .+....++++-.++..++
T Consensus 236 ~~~~~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 271 (357)
T 1zsy_A 236 KDMPQPRLALNCVGGKSS----TELLRQLARGGTMVTYGG 271 (357)
T ss_dssp SSSCCCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred hCCCCceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence 2 47999999875433 234567787776665543
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=89.85 E-value=0.19 Score=49.77 Aligned_cols=35 Identities=31% Similarity=0.275 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
+.+ +||+|||.|..|..+++.+++. |+++++.+..
T Consensus 10 ~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~ 44 (377)
T 3orq_A 10 KFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPS 44 (377)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 456 9999999999999999999999 9988776543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.87 Score=44.43 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=58.5
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh----c--cCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----S--GSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav----~--~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ .+..+.+++.|.... |....+..+.+ . ..|
T Consensus 170 ~g-~~vlV~GasggiG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 170 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred Cc-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCC-hhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcE
Confidence 46 89999997 99999999999988 9887766654 444567777775310 11111222222 1 589
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+||.++... .+......++++-.++..
T Consensus 242 ~vi~~~G~~----~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 242 IIIEMLANV----NLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp EEEESCHHH----HHHHHHHHEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHhccCCCEEEEE
Confidence 999988753 344445566666555543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=1.6 Score=45.11 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=64.3
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-Hc------------Cce
Q 014863 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AA------------GFT 163 (417)
Q Consensus 107 ~l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~------------G~~ 163 (417)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..-.. .+. .+ .+.
T Consensus 325 ~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~~~~---~~~~~~~~~~~~~~~~~~~~~ 394 (478)
T 2y0c_A 325 DLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPVAQE---EARRVIALDLADHPSWLERLS 394 (478)
T ss_dssp CCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTTTHH---HHHHHHHHHTTTCHHHHTTEE
T ss_pred cCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCCccH---HHHHhhcccccccccccccee
Confidence 5788 999999973 3456778888887 9988776543221 221 12 233
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~~-Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
. +.+..+++++||+|+++|.-..... -++.+...|+. .+|+|.-++
T Consensus 395 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~ 441 (478)
T 2y0c_A 395 F----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNL 441 (478)
T ss_dssp E----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCC
T ss_pred e----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCC
Confidence 2 4578899999999999999877654 24567776754 678887764
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.31 Score=46.91 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
+||.|||.|.-|.+.|..|++. |++|.|..+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~------G~~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH------GIKVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 7899999999999999999999 9999888654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=2 Score=39.78 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=55.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHHHHc----C----ceecCCCcCCHHhhhccC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAA----G----FTEENGTLGDIYETISGS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G----~~~~d~~~~~~~Eav~~A 179 (417)
.| .+|.-||||.-+. +..|. .. |.+| ++.+.+....+.+++. | +... ..+..+.-...
T Consensus 64 ~~-~~vLDiGcG~G~~--~~~l~~~~------~~~v-~gvd~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~f 130 (287)
T 1kpg_A 64 PG-MTLLDVGCGWGAT--MMRAVEKY------DVNV-VGLTLSKNQANHVQQLVANSENLRSKRVL---LAGWEQFDEPV 130 (287)
T ss_dssp TT-CEEEEETCTTSHH--HHHHHHHH------CCEE-EEEESCHHHHHHHHHHHHTCCCCSCEEEE---ESCGGGCCCCC
T ss_pred Cc-CEEEEECCcccHH--HHHHHHHc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCe
Confidence 46 8999999998433 33333 44 6655 5666655555555442 2 2211 23444433668
Q ss_pred CeEEEe-----ecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 180 DLVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 180 DiViLa-----vpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|+|+.. +++.....+++++...|+||-.+++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 999876 3445567889999999999887653
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=89.56 E-value=0.29 Score=49.50 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=44.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiVi 183 (417)
.+.| +||+|||.|..|..+++.+++. |+++++.+.. ..+......+.... ....+ +.++++++|+|+
T Consensus 32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d~~-~~~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLDPD-PASPAGAVADRHLR--AAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-TTCHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCC-CcCchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence 4567 9999999999999999999998 9998776533 22222222222321 11223 335567889888
Q ss_pred E
Q 014863 184 L 184 (417)
Q Consensus 184 L 184 (417)
.
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=1 Score=41.83 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=59.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCc--eecCCCcCCHHhhh--ccCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF--TEENGTLGDIYETI--SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~--~~~d~~~~~~~Eav--~~AD 180 (417)
.+ ++|.-||+|.-. ++..+.+. |.+| ++.+.++...+.+++ .|. ... ..+..+.+ ...|
T Consensus 120 ~~-~~VLDiGcG~G~--l~~~la~~------g~~v-~gvDi~~~~v~~a~~n~~~~~~~v~~~---~~d~~~~~~~~~fD 186 (254)
T 2nxc_A 120 PG-DKVLDLGTGSGV--LAIAAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRPRFL---EGSLEAALPFGPFD 186 (254)
T ss_dssp TT-CEEEEETCTTSH--HHHHHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCCEEE---ESCHHHHGGGCCEE
T ss_pred CC-CEEEEecCCCcH--HHHHHHHh------CCeE-EEEECCHHHHHHHHHHHHHcCCcEEEE---ECChhhcCcCCCCC
Confidence 46 899999999933 44456666 6654 566666655555554 343 211 23554433 3579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+...+......+++++...|+||..++++
T Consensus 187 ~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 187 LLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9998776666678888999999998877654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.96 Score=44.09 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=46.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHH-cCceecCCC-cCC---HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA-AGFTEENGT-LGD---IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~-~G~~~~d~~-~~~---~~Eav~~ADiViL 184 (417)
|+|.|.| .|.+|.++++.|.+. |++|++..|+.++.. +.... .++...... +.+ ..++++++|+||.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 7899999 599999999999998 998887777644321 11111 133221111 222 4567889999997
Q ss_pred eecc
Q 014863 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+...
T Consensus 80 ~a~~ 83 (352)
T 1xgk_A 80 NTTS 83 (352)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=1.1 Score=44.74 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|++ ++|.|||+|-.|.+++++|... |+ ++.+.+
T Consensus 29 ~~kL~~-~~VlIvGaGGlGs~va~~La~a------GVg~ItlvD 65 (340)
T 3rui_A 29 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVD 65 (340)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred HHHHhC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEec
Confidence 357888 9999999999999999999998 77 455544
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=89.49 E-value=0.66 Score=47.83 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| ++|+|.|+|++|...|+-|.+. |.+|+
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvV 262 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVV 262 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEE
Confidence 36889 9999999999999999999998 88876
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=1 Score=38.32 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=58.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCc----eecCCCcCCHHhhh---
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETI--- 176 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~----~~~d~~~~~~~Eav--- 176 (417)
..+ ++|.-||+|. | .++..+.+. +.++ ++.+.+....+.+++ .|. ... ..+..+.+
T Consensus 32 ~~~-~~vldiG~G~-G-~~~~~l~~~------~~~v-~~~D~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~ 98 (192)
T 1l3i_A 32 GKN-DVAVDVGCGT-G-GVTLELAGR------VRRV-YAIDRNPEAISTTEMNLQRHGLGDNVTLM---EGDAPEALCKI 98 (192)
T ss_dssp CTT-CEEEEESCTT-S-HHHHHHHTT------SSEE-EEEESCHHHHHHHHHHHHHTTCCTTEEEE---ESCHHHHHTTS
T ss_pred CCC-CEEEEECCCC-C-HHHHHHHHh------cCEE-EEEECCHHHHHHHHHHHHHcCCCcceEEE---ecCHHHhcccC
Confidence 356 8999999998 3 445556665 5444 566665655555554 332 211 23444433
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
...|+|+..-+......+++++...|++|..+++.
T Consensus 99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEE
Confidence 35799998776566678899999999998766543
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=0.17 Score=51.51 Aligned_cols=79 Identities=15% Similarity=0.049 Sum_probs=56.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
.||.|||. |..|..-+.-++.- |. +|.+.+++. ...|.. . +.+.++|+||.++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~-----~----~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP-----F----DEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC-----C----THHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc-----h----hhHhhCCEEEECcC
Confidence 58999999 99999988888777 86 787765531 112332 1 35679999999998
Q ss_pred chh-HHHHH-HHHHhcC-CCCcEEEEec
Q 014863 188 DAA-QADNY-EKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 188 d~a-~~~Vl-~eI~p~L-k~GaiL~~a~ 212 (417)
-.. .+.++ ++....| |+|++|+|++
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 522 12344 4566778 9999999885
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.1 Score=41.40 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=46.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLavp 187 (417)
|||.|.| .|.+|.++++.|.+. .|++|++..|+.++.. .....++......+.+ ..++++++|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-----~g~~V~~~~R~~~~~~-~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-----HIDHFHIGVRNVEKVP-DDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCTTEEEEESSGGGSC-GGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-----CCCcEEEEECCHHHHH-HhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5799999 599999999998774 1578887777644321 1122343321111333 4567899999999876
Q ss_pred c
Q 014863 188 D 188 (417)
Q Consensus 188 d 188 (417)
+
T Consensus 75 ~ 75 (289)
T 3e48_A 75 I 75 (289)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.99 Score=44.80 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHHHHHHHh---hhhhhcCCceEEEEecC-CchhHHHHHHc----------------CceecCC---C
Q 014863 112 NQIGVIGWGSQGPAQAQNLRD---SLAEAKSDIVVKVGLRK-GSRSFAEARAA----------------GFTEENG---T 168 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~---s~~~~~~G~~Vivg~r~-~~~s~~~A~~~----------------G~~~~d~---~ 168 (417)
.||||+|+|.+|..+.+.|.+ . .+++++..++. +.+......++ .+.. ++ .
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~-----~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v-~g~~i~ 76 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRR-----AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFV-GDDAIR 76 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGG-----GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCC-----CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEE-CCEEEE
Confidence 589999999999999999876 3 04565444432 22222222210 0000 00 0
Q ss_pred ---cCCHHhh-hc--cCCeEEEeecchhHHHHHHHHHhcCCCCc--EEEEecc
Q 014863 169 ---LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (417)
Q Consensus 169 ---~~~~~Ea-v~--~ADiViLavpd~a~~~Vl~eI~p~Lk~Ga--iL~~a~G 213 (417)
..++++. .. ++|+||.|+|.....+..+.+. +.|. +|+++.+
T Consensus 77 v~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l---~~GakkVVId~~a 126 (339)
T 2x5j_O 77 VLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHI---AAGAKKVLFSHPG 126 (339)
T ss_dssp EECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHH---HTTCSEEEESSCC
T ss_pred EEecCChHHCcccccCCCEEEECCCccccHHHHHHHH---HcCCCEEEEeccc
Confidence 1133332 11 7999999999887777665543 3454 3555444
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.63 Score=47.41 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=61.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC----ch-------hHHHHHHcCceecCCCcCCHHh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SR-------SFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~----~~-------s~~~A~~~G~~~~d~~~~~~~E 174 (417)
.++. .||.|+|.|.-|.++|+-|... |. +|++.++++ .+ ....+.... . .....+++|
T Consensus 185 ~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~--~-~~~~~~L~e 254 (398)
T 2a9f_A 185 SLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN--R-EFKSGTLED 254 (398)
T ss_dssp CTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHS--C-TTCCCSCSH
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccC--c-ccchhhHHH
Confidence 4555 7999999999999999999988 88 888877652 11 112222211 0 011356899
Q ss_pred hhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++++|++|=+..|... -+++...|+++.+|...+
T Consensus 255 av~~ADV~IG~Sapgl~---T~EmVk~Ma~~pIIfals 289 (398)
T 2a9f_A 255 ALEGADIFIGVSAPGVL---KAEWISKMAARPVIFAMA 289 (398)
T ss_dssp HHHTTCSEEECCSTTCC---CHHHHHTSCSSCEEEECC
T ss_pred HhccCCEEEecCCCCCC---CHHHHHhhCCCCEEEECC
Confidence 99999998766544322 134556688888887443
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=89.24 E-value=0.28 Score=48.85 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=53.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCc--hhHHHHHHcCceecCCCcCC-HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~-~~Eav~~ADiViL 184 (417)
+||+||| .|..|.-+.+-|.+. .+ ++.......+ +.... .|... .+.+ ..+.+.++|+||+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~~---~~~~~---~~~~~~~~~~~~~Dvvf~ 69 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLAF---RGQEI---EVEDAETADPSGLDIALF 69 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEEE---TTEEE---EEEETTTSCCTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCceee---cCCce---EEEeCCHHHhccCCEEEE
Confidence 6899999 799999999877765 32 3333221111 11110 11110 0111 1234678999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+|.....+..+.+. +.|..|++.++
T Consensus 70 a~~~~~s~~~a~~~~---~~G~~vID~Sa 95 (344)
T 3tz6_A 70 SAGSAMSKVQAPRFA---AAGVTVIDNSS 95 (344)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCC
Confidence 999988888877654 46888887766
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=89.20 E-value=0.72 Score=38.48 Aligned_cols=92 Identities=18% Similarity=0.122 Sum_probs=54.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~ 189 (417)
+++.|||.|..|..++..|++. .|++++...+.+...... .-.|+... + ..+..+.++ +.|.|++++|..
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~-----~g~~vvg~~d~~~~~~g~-~i~g~pV~-g-~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQG-----KEFHPIAFIDDDRKKHKT-TMQGITIY-R-PKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEECSCGGGTTC-EETTEEEE-C-GGGHHHHHHHHTCCEEEECCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCcEEEEEEECCcccCCC-EecCeEEE-C-HHHHHHHHHHCCCCEEEEeCCCC
Confidence 7899999999999999999875 167776555554321110 11354431 1 234455443 579999999965
Q ss_pred hH---HHHHHHHHhcCCCCcEEEEeccc
Q 014863 190 AQ---ADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 190 a~---~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.. .+++..+. +.|..+.+...+
T Consensus 77 ~~~~~~~i~~~l~---~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQVQKKVIIESLA---KLHVEVLTIPNL 101 (141)
T ss_dssp CHHHHHHHHHHHH---TTTCEEEECCCH
T ss_pred CHHHHHHHHHHHH---HcCCeEEECCCH
Confidence 43 23443332 345556555554
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.15 E-value=0.67 Score=43.80 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=45.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLavp 187 (417)
|+|.|.| .|.+|.++++.|.+. |++|++..|...+. +.....++......+.+ ..++++++|+||.+..
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAA------GHDLVLIHRPSSQI-QRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEECTTSCG-GGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEecChHhh-hhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 7999999 599999999999998 99988877764332 11111243211111233 4467889999998865
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=89.07 E-value=0.81 Score=45.40 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
.+.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 113 q~~L~~-~~VlvvG~GglGs~va~~La~a------Gvg~i~lvD~ 150 (353)
T 3h5n_A 113 QDKLKN-AKVVILGCGGIGNHVSVILATS------GIGEIILIDN 150 (353)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHhC------CCCeEEEECC
Confidence 467888 9999999999999999999998 76 5555554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=89.06 E-value=1.7 Score=36.86 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCce---ecCCCcCCHHhhh----c
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFT---EENGTLGDIYETI----S 177 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~---~~d~~~~~~~Eav----~ 177 (417)
.+ ++|.-||+|. | .++..+.+.. .+.+| ++.+.+....+.|++ .|.. .. ..+..+.+ .
T Consensus 25 ~~-~~vldiG~G~-G-~~~~~l~~~~----~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 25 PH-ETLWDIGGGS-G-SIAIEWLRST----PQTTA-VCFEISEERRERILSNAINLGVSDRIAV---QQGAPRAFDDVPD 93 (178)
T ss_dssp TT-EEEEEESTTT-T-HHHHHHHTTS----SSEEE-EEECSCHHHHHHHHHHHHTTTCTTSEEE---ECCTTGGGGGCCS
T ss_pred CC-CeEEEeCCCC-C-HHHHHHHHHC----CCCeE-EEEeCCHHHHHHHHHHHHHhCCCCCEEE---ecchHhhhhccCC
Confidence 45 7999999997 3 3444444431 03344 567766655666654 2322 10 12221222 5
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
..|+|++.-+... ..+++++...|+||..+++.
T Consensus 94 ~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp CCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence 6899997766544 67888899999998876644
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=0.33 Score=48.04 Aligned_cols=69 Identities=7% Similarity=-0.082 Sum_probs=41.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--e-----EEEEecCCc--hhHHHHHH--cC---ceecCCCcCCHHhhh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-----VKVGLRKGS--RSFAEARA--AG---FTEENGTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~-----Vivg~r~~~--~s~~~A~~--~G---~~~~d~~~~~~~Eav 176 (417)
+||+|+| .|.+|.+++..|... ++ + +.+.+.... .....+.+ +. +...-....+..+++
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~------~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG------SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhC------CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHh
Confidence 6899999 899999999999876 54 3 555444321 11222221 11 100000024567889
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+||++-
T Consensus 78 ~daDvVvitA 87 (333)
T 5mdh_A 78 KDLDVAILVG 87 (333)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEeC
Confidence 9999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 417 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 2e-94 | |
| d1qmga1 | 288 | a.100.1.2 (A:308-595) Class II ketol-acid reductoi | 1e-48 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 1e-41 | |
| d1np3a1 | 145 | a.100.1.2 (A:183-327) Class I ketol-acid reductois | 7e-23 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.004 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 281 bits (719), Expect = 2e-94
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 288 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 164 bits (418), Expect = 1e-48
Identities = 98/116 (84%), Positives = 109/116 (93%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
LEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 354 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFY 116
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 143 bits (361), Expect = 1e-41
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 91.9 bits (228), Expect = 7e-23
Identities = 21/122 (17%), Positives = 44/122 (36%)
Query: 295 EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 354
+ E +D+FGE+ +L G +V++ F E G ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 355 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYR 414
Y+ + + E+ + + + G + + G Y S
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 415 LR 416
R
Sbjct: 122 YR 123
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.0 bits (82), Expect = 0.004
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFR 116
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d1np3a1 | 145 | Class I ketol-acid reductoisomerase {Pseudomonas a | 99.94 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.93 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.86 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.84 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.81 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.56 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.55 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.49 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.46 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.46 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.37 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.34 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.25 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.2 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.17 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.1 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.05 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.99 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.97 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.94 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.93 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.88 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.88 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.87 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.86 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.84 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.77 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.69 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.68 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.62 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.59 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.49 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.48 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.35 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.31 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.11 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.07 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.01 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.93 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.87 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.85 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.84 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.57 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.55 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.54 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.47 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.46 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.46 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.46 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.43 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.37 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.36 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.35 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.33 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.32 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.3 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.28 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.24 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.23 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.2 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.2 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.2 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.15 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.14 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.13 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.12 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.11 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.08 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.06 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.03 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.0 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.98 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.95 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.94 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.87 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.84 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.83 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.83 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.77 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.64 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.62 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.57 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.5 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.37 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.33 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.29 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.25 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.25 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.22 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.18 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.14 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.13 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.12 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.11 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.1 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.93 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.91 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.69 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.68 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.68 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.67 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.62 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.57 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.55 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.43 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.39 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.39 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.33 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.3 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.3 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.25 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.21 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 95.2 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.11 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.04 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.04 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.97 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.81 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.8 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.67 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.6 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.6 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.59 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.52 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.51 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.19 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.77 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.56 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.54 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.53 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.5 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.39 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 93.33 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.32 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.06 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.01 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 92.92 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 92.91 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 92.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.87 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 92.87 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 92.73 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.68 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.61 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.53 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.41 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.15 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.07 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.07 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.05 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 92.01 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.01 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.9 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.87 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 91.85 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.85 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.83 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 91.78 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 91.52 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 91.37 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.18 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.06 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 91.05 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.96 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.86 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.81 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.78 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.7 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 90.55 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 90.52 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.42 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.38 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.34 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.32 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.3 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.23 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.21 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.2 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.1 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.95 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.92 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.88 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 89.84 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.77 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.56 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.25 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.18 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 89.14 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 89.12 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 88.85 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.82 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 88.78 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.75 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 88.65 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.34 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.31 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.29 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 88.21 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.15 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.08 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.98 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 87.95 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.92 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.89 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.88 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 87.66 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.46 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 87.25 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 87.22 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.87 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 86.83 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.76 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 86.57 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.4 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 86.37 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 86.16 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 86.11 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 86.08 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.91 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.85 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.72 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.7 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.69 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 85.38 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 85.36 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 85.25 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 84.91 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.74 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 84.58 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 84.51 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 84.42 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 84.38 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.37 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 84.3 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 83.97 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 83.7 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 83.51 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 83.5 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.31 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.99 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 82.98 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 82.67 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 82.43 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 82.35 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 81.69 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 81.61 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.49 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 81.42 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 81.07 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 81.04 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 80.51 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 80.22 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 80.17 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 80.04 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=4e-57 Score=423.47 Aligned_cols=226 Identities=84% Similarity=1.310 Sum_probs=210.2
Q ss_pred CccccccccchhhHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEe
Q 014863 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (417)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~ 147 (417)
++++++||+++|++++++|.|++|+|++++||+|++++++|+|||||+|||||+||+|+|+|||||-.+.++|++|+||+
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGL 80 (226)
T d1qmga2 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGL 80 (226)
T ss_dssp CCSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999722222367899999
Q ss_pred cCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCC
Q 014863 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (417)
Q Consensus 148 r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~ 227 (417)
|.++++|++|+++||.+.+.++.+.+|++++||+|++++||+.|.++|++|.|+|++|++|.++|||+++|.+...+.||
T Consensus 81 r~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p 160 (226)
T d1qmga2 81 RKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFP 160 (226)
T ss_dssp CTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCC
T ss_pred CCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccC
Confidence 99999999999999975555567899999999999999999999999999999999999999999999998775556789
Q ss_pred CCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccc
Q 014863 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (417)
Q Consensus 228 ~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett 293 (417)
+|++|+|++||+||+.||++|++|+.++|.|+||+|+++||.|+++++++++|+.++|+.+++|||
T Consensus 161 ~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 161 KNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999886
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.2e-43 Score=317.93 Aligned_cols=169 Identities=36% Similarity=0.581 Sum_probs=161.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
.+.|++ |+|+|||||+||+++|+||||| |++|+|++|+++++|++|+++||. +.+++|++++||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 368899 9999999999999999999999 999999999999999999999999 5799999999999999
Q ss_pred eecchhHHHHHH-HHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
++||..|.++|+ +|.|+|++|++|.|+|||+++|. .+.||++++|+|++||+||+.||++|++| +|+|+++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~---~I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYN---QVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTT---SSCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEee---eeecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 69999999999999999999985 46899999999999999999999999996 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccc
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~--~iett 293 (417)
+++||.|+++++++++|+.++|++| +++||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999987 78875
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=3.6e-28 Score=214.60 Aligned_cols=116 Identities=19% Similarity=0.362 Sum_probs=107.9
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014863 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 ~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++++++|+++|++|++||.||++|+|+++ +|+++|+++|+.+|+++|| +|++||++
T Consensus 1 F~~E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~he~~-lI~~li~~~Gl~~m~~~iS--dTAeyG~y 77 (145)
T d1np3a1 1 FKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELK-LIVDLMYEGGIANMNYSIS--NNAEYGEY 77 (145)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHH
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHccc-hhHHHHHHHhHHHHHHHhc--cHHHHHHH
Confidence 67899999999999999999999999999999999999999999999997 9999999999999999999 88899998
Q ss_pred hhc---cChhHHHHHHHHHHhhhcchhHHHHHHcCCcccccc
Q 014863 374 YSA---SYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSS 412 (417)
Q Consensus 374 ~~~---~~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~ 412 (417)
..+ -+.++++.|+++|++||||+|+|+|+.+++..+++.
T Consensus 78 ~~~~~~~~~~~k~~mk~~l~~IqsG~fak~~i~e~~~~~~~l 119 (145)
T d1np3a1 78 VTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSM 119 (145)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHH
Confidence 443 267899999999999999999999999988776653
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.93 E-value=2e-27 Score=229.43 Aligned_cols=123 Identities=79% Similarity=1.220 Sum_probs=115.4
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014863 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 ~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++++++|+.++++|++|++||++++|+++|.|+++|+++||.+||+++|++++..|-+.
T Consensus 1 f~~E~~SDl~GEq~iL~G~~~~~~~~~f~~l~~~G~~p~~Ay~etvee~t~~I~~lI~~~Gi~~My~~lS~~ak~~~~~~ 80 (288)
T d1qmga1 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAA 80 (288)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHTTHHHHHTHHHHHHHHTCHHHHHHTSCHHHHHHHHHH
T ss_pred CchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhChHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998888778777
Q ss_pred hhccChhHHHHHHHHHHhhhcchhHHHHHHcCCcc-cccccccc
Q 014863 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF-YVSSYRLR 416 (417)
Q Consensus 374 ~~~~~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~-~~~~~~~~ 416 (417)
+...++|++++|+++|++|+||+|+|+||++++|+ |++.+.||
T Consensus 81 ~~~~~~~~kpvf~e~yddV~SG~eak~vi~a~~r~dyre~L~~~ 124 (288)
T d1qmga1 81 YSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAF 124 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHcCCccchHHhcchh
Confidence 77678999999999999999999999999987776 78888875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.86 E-value=5.1e-22 Score=174.65 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=124.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||||||+|+||.+++++|.++ |++++++.|+.++..+.+.+.|+.. +.+++|+++++|+|+|++||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999998 9999998887666666667778875 67899999999999999999887
Q ss_pred HHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 192 ADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
.++++ .++++++ +++++|+++..+++ .++++.+++|+|||+|... |.|++. ++....++
T Consensus 71 ~~vl~----~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v------------~~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVLK----PLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALVS 130 (152)
T ss_dssp HHHHT----TSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTCC
T ss_pred HHHhh----hcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc------------CccceE-EEeCCCCC
Confidence 76664 4667775 45889999888876 5567889999999999888 577887 66688899
Q ss_pred HHHHHHHHHHHHHhCCC
Q 014863 271 GRATNVALGWSVALGSP 287 (417)
Q Consensus 271 gea~e~a~al~~aiG~~ 287 (417)
.+..+.++.+|..+|..
T Consensus 131 ~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 131 QELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 99999999999999953
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.84 E-value=2.9e-21 Score=169.07 Aligned_cols=146 Identities=15% Similarity=0.249 Sum_probs=118.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||+|||+|+||.+++++|.++ | ++|.+++|+.++..+.+.+.|+.. ..+. +.+.++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999988 7 688887777555555566678774 3344 45788999999999988
Q ss_pred HHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 191 QADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
..++++++.+ .+++ |++++|+++..+++ .++.+.+++|+|||+|... |+|++. ++...+.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~------------~~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh------------cCCcEE-EEeCCCC
Confidence 8888877653 3454 56889999988876 6677778999999999887 578987 5668888
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 014863 270 DGRATNVALGWSVALGSP 287 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~ 287 (417)
+.+..+.++.+|..+|..
T Consensus 131 ~~~~~~~v~~l~~~~G~~ 148 (152)
T d1yqga2 131 SETDRRIADRIMKSVGLT 148 (152)
T ss_dssp CHHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHHHHhCCCE
Confidence 999999999999999943
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.81 E-value=7.9e-20 Score=160.98 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=124.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCcCCHHh-hhccCCeEEEeecc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E-av~~ADiViLavpd 188 (417)
||||+|||+|+||.++|++|+++ |+. -+++++.+.+..+.+.+.|+.. ....+..+ ...++|+|++|+|+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 72 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEEECChHHHHHHHHhhcch--hhhhhhhhhhccccccccccCCc
Confidence 78999999999999999999998 762 2455667788889999998862 22344443 44589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
+...++++++.++++++++|+++++.+. ..++. .+++ ++|..||. +|... ..++.+++....|.++++++
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~---~~~~--~~i~~hPm-~G~e~-sG~~~a~~~Lf~g~~~il~p 145 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPI-AGTEK-SGVEYSLDNLYEGKKVILTP 145 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEE-CCCSC-CSGGGCCSSTTTTCEEEECC
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHH---hhcc--cccccccc-ccccc-ccHHHHHHHhhCCCeEEEec
Confidence 9999999999999999999999998653 23332 2232 79999993 22211 12334445556678999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC
Q 014863 266 HQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.+.+.+.++.++.+|+.+|+.
T Consensus 146 ~~~~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 146 TKKTDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999999964
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.80 E-value=1.6e-19 Score=158.88 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=120.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||+|||+|+||.++|++|+++ |++|++++ ++.+..+.+.+.|+.. . ..+..+++++||+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~d-~~~~~~~~a~~~~~~~--~-~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVS-RQQSTCEKAVERQLVD--E-AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTSCS--E-EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEE-CCchHHHHHHHhhccc--e-eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 99987654 4466788888988752 1 34556789999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCC
Q 014863 192 ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
.++++++.++++++++|+++.+.... .... . ..+++..||...... ..+..+.+....|.++++++...
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~---~---~~~~~~~h~~~~~~~--~g~~~a~~~l~~~~~~il~~~~~ 142 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQ---L---WSGFIGGHPMAGTAA--QGIDGAEENLFVNAPYVLTPTEY 142 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHH---H---STTCEEEEECCCCSC--SSGGGCCTTTTTTCEEEEEECTT
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHH---h---hcccccceeeecccc--cchhhhcccccCCCeEEEEeCCC
Confidence 99999999999999999988876532 2221 1 125788888432211 01112222223467888898999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 014863 269 VDGRATNVALGWSVALGSP 287 (417)
Q Consensus 269 ~sgea~e~a~al~~aiG~~ 287 (417)
.+.++.+.+..+|+.+|+.
T Consensus 143 ~~~~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 143 TDPEQLACLRSVLEPLGVK 161 (165)
T ss_dssp CCHHHHHHHHHHHGGGTCE
T ss_pred CCHHHHHHHHHHHHHhCCE
Confidence 9999999999999999964
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=7.6e-15 Score=128.80 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=108.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||||||+|+||.++|++|.++ |++|++++|. .+..+...+.|... ..+..|+++++|+|++|+|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCC-cchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 6899999999999999999999 9999877765 44567777788875 67899999999999999996666
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 ~-~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
. +++ +.+.+.+++|++|++..-.... .+.+ .....+++++-....+..... +. |-..++
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~gg~~~a----~~-------g~l~~~- 135 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSGGEPKA----ID-------GTLSVM- 135 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEESHHHHH----HH-------TCEEEE-
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccCChhHH----hc-------CCeEEE-
Confidence 5 566 3589999999999988765422 2221 122457888877554422221 12 333323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014863 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~ 286 (417)
+.. +.++.+.++.++..+|.
T Consensus 136 ~gG--~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 136 VGG--DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp EES--CHHHHHHHHHHHHTTEE
T ss_pred EcC--CHHHHHHHHHHHHHhcC
Confidence 343 57889999999999985
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=1.8e-14 Score=124.57 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=106.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
|+||+||| +|+||.++|++|+++ |++|.++++.... ..++.+.++|++++++|+.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 48999999 999999999999999 9999887764321 2345678999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
+..+++.++.+++++|++|+++++++....+......+ .++|..||.. |+.. .+ -.|...++++..
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP~~-Gp~~-----~~----~~g~~~v~~~g~-- 130 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-----AS----MAKQVVVRCDGR-- 130 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-----SC----CTTCEEEEEEEE--
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecccC-CCcc-----cc----cCCcEEEEecCC--
Confidence 99999999999999999999999886332221111333 3689999943 3331 11 134555555554
Q ss_pred CHHHHHHHHHHHHHhCCCccccc
Q 014863 270 DGRATNVALGWSVALGSPFTFAT 292 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iet 292 (417)
+.++.+.++.++..+|+ +++||
T Consensus 131 ~~~~~~~~~~ll~~~Ga-~v~et 152 (152)
T d2pv7a2 131 FPERYEWLLEQIQIWGA-KIYQT 152 (152)
T ss_dssp CGGGTHHHHHHHHHTTC-EEEEC
T ss_pred CHHHHHHHHHHHHHhCC-EEEeC
Confidence 45678889999999996 45543
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.49 E-value=6e-15 Score=141.72 Aligned_cols=93 Identities=10% Similarity=0.083 Sum_probs=81.0
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHhcHHHHHhcccCchhhhhhhhhhc-cChhHHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK-IISTQGMLAVYNSFSGEDKKEFEKAYSA-SYYPCMEILYE 387 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~-li~e~G~~~l~~~vs~~~~~~~~~~~~~-~~~~~~~~m~~ 387 (417)
.|.+.+++.|+||.++++|++|+.||++|+|+++ .|.+ ||+++|+++|+++|| +||+||++.-+ +. ...+|++
T Consensus 158 ~g~~~~~~~a~~e~l~~~G~~~~~a~~E~~~E~~-~~~~~li~~~g~~~M~~~~S--~TA~~G~~~~~prf--~~~~~~~ 232 (288)
T d1qmga1 158 AGVYVALMMAQIEILRKKGHSYSEIINESVIEAV-DSLNPFMHARGVSFMVDNCS--TTARLGSRKWAPRF--DYILSQQ 232 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHTHHHH-HTTHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHH--HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHhh--HHHHcccccchhhh--hHHHHHH
Confidence 7888899999999999999999999999999999 5665 999999999999999 78899997332 21 1247899
Q ss_pred HHHhhhcchhHHHHHHcCCc
Q 014863 388 CYEDVAAGSEIRSVVLAGRR 407 (417)
Q Consensus 388 ~~~~v~~g~~~~~~~~~~~~ 407 (417)
+|++||+|.||++||.+++.
T Consensus 233 ~l~~i~~G~~a~~~l~en~~ 252 (288)
T d1qmga1 233 ALVAVDNGAPINQDLISNFL 252 (288)
T ss_dssp HHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHhcc
Confidence 99999999999999988653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.46 E-value=3e-13 Score=118.74 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=108.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||||||+|+||.++|++|.++ |++|.+++|. .+..+.+...|... ..+..|++..+|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECc-hhhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 78999999999999999999999 9999887765 44566777788875 6789999999999999999877
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl~---eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
.. +++. .+.+.+++|++|++....... .+.+ ....++++++- +|-.-++.. -+. |...++
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~~---a~~-------G~l~~~ 136 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTAG---AAA-------GTLTFM 136 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHHH---HHH-------TCEEEE
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCccc---ccc-------CCeEEE
Confidence 65 4654 378899999999988766422 2221 12245788885 352222221 122 343333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCC
Q 014863 264 AVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~ 286 (417)
. .. +.++.+.++.++..+|.
T Consensus 137 ~-gG--~~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 137 V-GG--DAEALEKARPLFEAMGR 156 (162)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEE
T ss_pred e-cC--CHHHHHHHHHHHHHHcC
Confidence 3 33 56789999999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=4.3e-15 Score=128.31 Aligned_cols=143 Identities=11% Similarity=0.047 Sum_probs=87.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHH
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~ 193 (417)
|||||+|+||.+++++|++. +..+.+++|+.++..+.+...+.. ..+++|+++++|+||+|+||+++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999776 544456777766655666655544 5678899999999999999999888
Q ss_pred HHHHHHhcCCCCcEEEEecc-chhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHH
Q 014863 194 NYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (417)
Q Consensus 194 Vl~eI~p~Lk~GaiL~~a~G-~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sge 272 (417)
+++++. +++++|+++++ ..+..++. ..+..+..+...++ ++... .. ..+.++ ++.. +.+
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~~~~~~~~-~~~~~----~~-----~~~~~~--~~~g--d~~ 130 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSS-LEKAL----EM-----KDQIVF--GLEG--DER 130 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC---CTTGG----GC-----GGGCCE--EECC--CTT
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh---hccccceeeeeccc-ccchh----hh-----ccCcEE--EEeC--CHH
Confidence 876653 46888775554 44444422 11112222222222 22221 00 122333 3444 457
Q ss_pred HHHHHHHHHHHhCCC
Q 014863 273 ATNVALGWSVALGSP 287 (417)
Q Consensus 273 a~e~a~al~~aiG~~ 287 (417)
+.+.++.|+..+|+.
T Consensus 131 ~~~~~~~l~~~lG~~ 145 (153)
T d2i76a2 131 GLPIVKKIAEEISGK 145 (153)
T ss_dssp THHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHCCc
Confidence 889999999999975
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.37 E-value=9.4e-13 Score=114.03 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=82.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||||||+|+||.++|++|+++ |++|+++++..++. ...+...++. .+++|+++++|+||+++|++.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 6899999999999999999999 99988877664433 3344444443 478899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchh
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..+++.++.+.+ +++++++.... ...+.+ .++ +..++-+.+.++..
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~~~ 117 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGSVR 117 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSCHH
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCCcc
Confidence 999998888876 56777776543 333433 333 33566555555433
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.34 E-value=2.3e-12 Score=112.58 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=78.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-----------CCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------d~~~~~~~Eav~~AD 180 (417)
|||+|||.|+||.++|..|.++ |++|.++.|. .+..+...+.|.... .....++.|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 8999999999999999999999 9999887775 444555555442210 001357889999999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+|++++|...+.+++++++|+++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.25 E-value=9.2e-12 Score=110.30 Aligned_cols=152 Identities=15% Similarity=0.065 Sum_probs=101.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec----CCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----d~~~~~~~Eav~~ADiViLavp 187 (417)
.+|||||+|+||.+||++|.++ |++|++++|+.++ .+...+.+.... .....++.+++..+|+|++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 5799999999999999999999 9999888877554 444444443210 0013356678889999999999
Q ss_pred chhH-HHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 188 DAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 188 d~a~-~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+... .++++++.+.+++|+++++.+..... .+.+ .....++.++- +|-.-++.. -++ |. .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~ld-apvsGg~~~---A~~-------G~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVG-SGVSGGEDG---ARY-------GP-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-EEEESHHHH---HHH-------CC-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceec-cccccCccc---ccC-------Cc-EEE
Confidence 7655 57888999999999999988765422 1211 12235677764 342222221 123 34 333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 014863 264 AVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.. +.+..+.++.++..+|..
T Consensus 142 -~gG--~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGG--NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -cCC--CHHHHHHHHHHHHHHhcc
Confidence 344 346788899999999964
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.20 E-value=1.7e-10 Score=102.67 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=96.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceec-----C----CCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEE-----N----GTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~-----d----~~~~~~~Eav~~ADi 181 (417)
|||+|||.|+||.++|..|.++ |++|.++.|... +..+.-.+...... . ....+.+++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 7999999999999999999999 999988876422 22222222111000 0 013567889999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccch--------h-hhhhccccCCC-CCCcEEEeccCCchhhHHHHHhhc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL--------L-GHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~--------i-~~~~~~~i~~~-~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
|++++|.+...++++++.|++++..+|+.+.|+. . ..+.+ +... ..--++..-|+.+..+.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~--~~~~~~~~~~vlsGP~~A~Ei~------- 145 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWR--LKHDLRERTVAITGPAIAREVA------- 145 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHT--TSTTCGGGEEEEESSCCHHHHH-------
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCccccccccccchHHHHh--hhcccccceeEEcCCccHHHHH-------
Confidence 9999999999999999999998887777777651 1 12222 1111 12234556677765553
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHH
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWS 281 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~ 281 (417)
.|.++.+++... +.+..+.+..+|
T Consensus 146 -----~~~pt~~vias~-~~~~a~~i~~~f 169 (180)
T d1txga2 146 -----KRMPTTVVFSSP-SESSANKMKEIF 169 (180)
T ss_dssp -----TTCCEEEEEECS-CHHHHHHHHHHH
T ss_pred -----cCCCcEEEEEcC-CHHHHHHHHHHH
Confidence 356664554433 445445555555
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.6e-10 Score=102.03 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=113.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceec--------------
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------------- 165 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~-------------- 165 (417)
|+||+|||.|.||.++|..+... |++|+++++.. +..+.+ .+.|....
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~-~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTE-DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCh-HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 48999999999999999999999 99998876653 222222 22232100
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
-....+..+++++||+|+=++|.+... +++.++.+.++++++|. -++++.+..+.. .....-+++..||--|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 001457788999999999999966553 69999999999999875 556777777765 333334899999988877
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++ .- =|.++...+.+..+.+.+++..+|..
T Consensus 154 ~~~-------------lV-EIv~g~~T~~~~i~~~~~~~~~lgk~ 184 (192)
T d1f0ya2 154 VMK-------------LV-EVIKTPMTSQKTFESLVDFSKALGKH 184 (192)
T ss_dssp TCC-------------EE-EEECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred ccc-------------EE-EEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 721 21 25578889999999999999999964
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.10 E-value=4.6e-10 Score=100.60 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=111.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceecC--------CCcC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTLG 170 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d--------~~~~ 170 (417)
.|+||+|||.|.||.++|..+..+ |++|++.++. .+..+.+.+ .|..... -...
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 75 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 75 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc
Confidence 468999999999999999999999 9999877664 333333322 1111000 0012
Q ss_pred CHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
+..+.+.++|+|+-++|-..-. +++.+|.++.+++++|. -++++.+..+.. .....-+++..|+--|.+.
T Consensus 76 ~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~---- 148 (186)
T d1wdka3 76 LSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM---- 148 (186)
T ss_dssp SSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred cccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCccc----
Confidence 2234678999999999966553 69999999999999875 667888877765 2333348999999888877
Q ss_pred HhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~l-iav~qd~sgea~e~a~al~~aiG~~ 287 (417)
++.+ +.++...+.+..+.+.+++..+|..
T Consensus 149 -----------~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~ 178 (186)
T d1wdka3 149 -----------MPLVEVIRGEKSSDLAVATTVAYAKKMGKN 178 (186)
T ss_dssp -----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred -----------CCeEEECCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3332 4568889999999999999999964
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.05 E-value=3.1e-10 Score=98.31 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=72.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||||||+|+||.+||++|.+. |+. ++++|..++..+...+.+... +..+.+.++|++++++|+...
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhh
Confidence 3799999999999999999988 875 478888777666666655542 345667789999999997766
Q ss_pred H-HHHHHHHhcCCCCcEEEEeccch
Q 014863 192 A-DNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 192 ~-~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
. .+...+.+.++++.++++..-..
T Consensus 68 v~~~~~~l~~~~~~~~~iid~sT~~ 92 (156)
T d2cvza2 68 VYEVAEALYPYLREGTYWVDATSGE 92 (156)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred hhhhhccccccccccccccccccCC
Confidence 5 56678999999999998776553
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.99 E-value=4.4e-10 Score=100.90 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=79.1
Q ss_pred hccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH
Q 014863 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (417)
Q Consensus 94 ~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (417)
+|+|+|........++| ++|||||+|.+|..+|+.++.. |.+|+++++...+ ..... ..+.+
T Consensus 26 ~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~~----~~~l~ 87 (181)
T d1qp8a1 26 MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWRF----TNSLE 87 (181)
T ss_dssp HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSCC----BSCSH
T ss_pred HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------cceee----eechh
Confidence 56778876665567999 9999999999999999999988 9998877654221 12221 45789
Q ss_pred hhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
|++++||+|++++|..... .++. +.+..||+|++|+-++
T Consensus 88 ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 88 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred hhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence 9999999999999976654 4664 6889999999988553
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.97 E-value=1.6e-09 Score=97.53 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=96.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC--------ceecC--CCcCCHHhhhcc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEEN--GTLGDIYETISG 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------~~~~d--~~~~~~~Eav~~ 178 (417)
.-|+||+|||.|++|.++|..|.+. |++|.++.|..+ ..+.-.+.+ +...+ ....++++++++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~-~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ 77 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG 77 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred ceeceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHH-HHHHHhhcccccccccccccccccccchhhhhccCC
Confidence 3458899999999999999999999 999988876533 233222222 11100 014578999999
Q ss_pred CCeEEEeecchhHHHHHHHHHhc-----CCCCcE-EEEeccch------h-hhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 179 SDLVLLLISDAAQADNYEKIFSC-----MKPNSI-LGLSHGFL------L-GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~-----Lk~Gai-L~~a~G~~------i-~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
+|+|++++|.+...++++++.++ ++++.. |..+-|+. + ..+.+ .+|.+.-.+..-|+.+..++
T Consensus 78 ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e---~~~~~~~~vlsGP~~A~Ev~- 153 (189)
T d1n1ea2 78 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAIEVA- 153 (189)
T ss_dssp CSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHHHHH-
T ss_pred CCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHH---HhcccceEEEecCCcHHHHH-
Confidence 99999999999999999987764 345554 44566773 2 12332 34444334566777655443
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~ 282 (417)
+|.++.+++.. .+.+..+.+.+++.
T Consensus 154 -----------~~~pt~~viAs-~~~~~a~~i~~lfs 178 (189)
T d1n1ea2 154 -----------TGVFTCVSIAS-ADINVARRLQRIMS 178 (189)
T ss_dssp -----------TTCCEEEEEEC-SSHHHHHHHHHHHS
T ss_pred -----------cCCCcEEEEEe-CCHHHHHHHHHHhC
Confidence 35666455443 24555555566654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.94 E-value=8.4e-10 Score=100.03 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=81.3
Q ss_pred hhhccCccccc--------ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 92 YIVRGGRDLFN--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 92 ~~~~~g~~~f~--------~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
..+|+|+|... .....|.| ++|||||+|++|..+|+.++.. |++|+++++..... .....++.
T Consensus 23 ~~~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~~~~~~~ 93 (193)
T d1mx3a1 23 QALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VERALGLQ 93 (193)
T ss_dssp HHHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HHHHHTCE
T ss_pred HHHHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--chhhhccc
Confidence 34567777543 12367999 9999999999999999999887 99988776653332 23334665
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a 211 (417)
. ..+.+|++++||+|++++|..... .++. +.+..||+|++|+-+
T Consensus 94 ~----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~ 139 (193)
T d1mx3a1 94 R----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 139 (193)
T ss_dssp E----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEEC
T ss_pred c----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEec
Confidence 4 568999999999999999966554 4554 678899999998844
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.93 E-value=2.5e-09 Score=93.87 Aligned_cols=152 Identities=16% Similarity=0.099 Sum_probs=97.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC----CCcCC---HHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN----GTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d----~~~~~---~~Eav~~ADiViL 184 (417)
|||||||+|+||.+||++|.++ |++|.+++|..++..+..+ .|..... ....+ .-..+..++.+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMK-ANASAPFAGNLKAFETMEAFAASLKKPRKALI 74 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHH-HTTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHH-cCCccccccchhhhhhhhHHHHhcccceEEEE
Confidence 7899999999999999999999 9999887776554433333 3432100 00112 2335567888888
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
++++.... .++..+.+.+++|+++++.+-... ..+.+ . .-.+++.++-..-.+... ..+. |.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~-~-l~~~~~~~ldapv~g~~~----~a~~-------g~~ 141 (178)
T d1pgja2 75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLGMGISGGEE----GARK-------GPA 141 (178)
T ss_dssp CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEEEEEESHHH----HHHH-------CCE
T ss_pred eecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH-H-HhhcceeEecccccCCcc----hhcC-------CcE
Confidence 88876664 788889999999999887764431 12222 1 224567776543222111 2233 343
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
++ +.. +.+..+.++.++..+|..
T Consensus 142 -~m-vgG--~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 142 -FF-PGG--TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp -EE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -EE-eeC--CHHHHHHHHHHHHHHhcc
Confidence 23 333 568999999999999964
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.88 E-value=2e-09 Score=97.78 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=77.4
Q ss_pred hccCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 014863 94 VRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 94 ~~~g~~~f~~~-~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (417)
+++|+|.+... ...|.| ++|||||+|++|..+|+.|+.. |.+|+++++.... .....++. ..+.
T Consensus 26 ~~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~-----~~~l 90 (197)
T d1j4aa1 26 VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY-----VDSL 90 (197)
T ss_dssp HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-----CSCH
T ss_pred HHhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-----eccc
Confidence 45565543222 378999 9999999999999999999887 9998776554322 22234554 4689
Q ss_pred HhhhccCCeEEEeecchhHH-HHH-HHHHhcCCCCcEEEEe-cc
Q 014863 173 YETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~~-~Vl-~eI~p~Lk~GaiL~~a-~G 213 (417)
++++++||+|++++|..... .++ ++.+..||+|++|+-+ -|
T Consensus 91 ~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 134 (197)
T d1j4aa1 91 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 134 (197)
T ss_dssp HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred cccccccccccccCCccccccccccHHHHhhhCCccEEEecCch
Confidence 99999999999999965553 455 4677889999998844 34
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.88 E-value=2.4e-09 Score=96.78 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=80.2
Q ss_pred hhhccCcccc----cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC
Q 014863 92 YIVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~~~~g~~~f----~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~ 167 (417)
..+|.|+|.. ......+.| ++|||||+|.+|..+|+.++.. |.+|+++++......... ..+...
T Consensus 25 ~~~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~~~~--- 93 (191)
T d1gdha1 25 KMIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQATF--- 93 (191)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHTCEE---
T ss_pred HHHHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-cccccc---
Confidence 3466677742 223467889 9999999999999999999887 999877665433323333 334332
Q ss_pred CcCCHHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
..+.++++++||+|++++|-... ..++. +.+..||+|++|+-++
T Consensus 94 -~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~s 139 (191)
T d1gdha1 94 -HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 139 (191)
T ss_dssp -CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred -cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecC
Confidence 46899999999999999997655 35664 6888999999988443
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.87 E-value=2.1e-09 Score=89.63 Aligned_cols=65 Identities=8% Similarity=0.067 Sum_probs=60.9
Q ss_pred hcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 301 DIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 301 dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
+.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.+++. ..|+++|+||.
T Consensus 3 ~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~-Gs~~ll~~s~~~~~~L~~~V~Spg 73 (111)
T d1yqga1 3 EKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFK-GAVALAEQTGEDFEKLQKNVTSKG 73 (111)
T ss_dssp THHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHhcccCcc
Confidence 567788999999999 7999999999999999999999999999 99999999877 99999999995
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.86 E-value=2.4e-09 Score=96.01 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=81.0
Q ss_pred hhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
.+|+|+|.... ....+.| ++|||||+|.+|..+|+.++.. |.+|+++++... .+.....++. ..+
T Consensus 26 ~~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~-----~~~ 91 (184)
T d1ygya1 26 SLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE-----LLS 91 (184)
T ss_dssp HHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-----ECC
T ss_pred HHHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-----ecc
Confidence 45677785443 2467899 9999999999999999999877 999876655433 2344455665 468
Q ss_pred HHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
.+|++++||+|++++|-.... .++. +.+..||+|++|+-++
T Consensus 92 l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~s 134 (184)
T d1ygya1 92 LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 134 (184)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence 999999999999999966654 5664 6889999999988443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.84 E-value=1.8e-09 Score=96.90 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=80.6
Q ss_pred hccCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 ~~~g~~~f~~---~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
+|+|+|.... ....++| ++|||||+|.+|..+|+.|+.. |.+|+++++.. .........++.. ..
T Consensus 25 ~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~-~~~~~~~~~~~~~----~~ 92 (188)
T d2naca1 25 ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNLTW----HA 92 (188)
T ss_dssp HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTCEE----CS
T ss_pred HHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeecc-ccccccccccccc----cC
Confidence 4567775322 1357889 9999999999999999999887 99987766543 3344445556664 56
Q ss_pred CHHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEe
Q 014863 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS 211 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a 211 (417)
+.+|++++||+|++++|-... ..++. +.+..||+|++|+-+
T Consensus 93 ~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~ 135 (188)
T d2naca1 93 TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNT 135 (188)
T ss_dssp SHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEEC
T ss_pred CHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEec
Confidence 899999999999999996554 45664 688999999988844
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=2e-09 Score=91.96 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc---eecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
|||+|||.|+||..+|..|.+. |++|.+..|...+... ....+. ........+..+.+..+|+|++++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 7999999999999999999999 9999888776432110 000110 00000123455778899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 189 AAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
.+..++++.+.+++.++++|+ ...|+.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred cchHHHHHhhccccCcccEEeeccCccc
Confidence 999999999999999888655 556775
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.69 E-value=6.9e-09 Score=94.11 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=76.9
Q ss_pred hhccCcccccc--cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 93 IVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 93 ~~~~g~~~f~~--~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
.+++|+|.... ....|.| ++|||||+|++|..+|+.|+.. |++|+++++..... ....+. ..
T Consensus 26 ~~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~-----~~ 89 (199)
T d1dxya1 26 QLQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD-----YV 89 (199)
T ss_dssp HHHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE-----EC
T ss_pred HHHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh-----HH
Confidence 34566774321 2368999 9999999999999999999887 99987766543221 112233 45
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe-cc
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a-~G 213 (417)
+.++++++||+|++++|..... .++. +.+..||+|++|+-+ -|
T Consensus 90 ~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 135 (199)
T d1dxya1 90 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 135 (199)
T ss_dssp CHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred HHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccH
Confidence 8999999999999999965553 4554 678889999998844 44
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.68 E-value=1.1e-08 Score=84.10 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=59.4
Q ss_pred cccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 302 IFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 302 lfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++. |.+.|+.+++. ..|+++|+||.
T Consensus 2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~-gs~~ll~~~~~~p~~l~~~V~Spg 71 (104)
T d2ahra1 2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVL-ASASNLKTSSQSPHDFIDAICSPG 71 (104)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHSSSCHHHHHHHHCCTT
T ss_pred CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHhccCCC
Confidence 35677999999999 5899999999999999999999999999 99999999886 99999999995
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=2.1e-08 Score=89.72 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=75.5
Q ss_pred hccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 014863 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 94 ~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (417)
+++|.|.... ....+.| ++|||||+|.+|..+|+.+... |.+|+++++...... ..... ..+.
T Consensus 27 ~~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~----~~~l 90 (188)
T d1sc6a1 27 AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ----VQHL 90 (188)
T ss_dssp HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE----CSCH
T ss_pred HHhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh----hhhH
Confidence 3556664332 2357889 9999999999999999999887 999887766533211 22222 4689
Q ss_pred HhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEE-Eecc
Q 014863 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~-~a~G 213 (417)
+|++++||+|++++|-... ..++. +.+..|++|++|+ .+-|
T Consensus 91 ~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 134 (188)
T d1sc6a1 91 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 134 (188)
T ss_dssp HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCS
T ss_pred HHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcH
Confidence 9999999999999995544 45664 6888999999988 4445
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6.1e-08 Score=85.72 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=77.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..|.| |+++|||||-+|..+|+.+|.. |.+|++.....-+ .-+|.-+|+. +.+.+++++.+|+|+.+
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~dp~~-al~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEIDPIN-ALQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecccch-hHHhhcCceE-----eeehhhhhhhccEEEec
Confidence 46789 9999999999999999999998 9999887665333 4455668998 56899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|..... +=.+.++.||+|++|.-+..|.
T Consensus 87 TGn~~v--I~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCIDI--ILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSCS--BCHHHHTTCCTTEEEEECSSST
T ss_pred CCCccc--hhHHHHHhccCCeEEEEecccc
Confidence 985432 1236778899999999887774
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.49 E-value=1.4e-07 Score=83.41 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=77.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
--|.| |++.|+|||-.|..+|+.+|.. |.+|+|....+-+ .-+|.-+||. +.+.+|+++.+|++|.+
T Consensus 19 ~~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~DPi~-alqA~mdGf~-----v~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDPIC-AIQAVMEGFN-----VVTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCHHH-HHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecCchh-hHHHHhcCCc-----cCchhHccccCcEEEEc
Confidence 35788 9999999999999999999999 9999887654333 4455668998 57999999999999999
Q ss_pred ecchhHHHHH-HHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|.... ++ .+.+..||+|++|.-+..|.
T Consensus 86 TGn~~---vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVD---VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCCCc---cccHHHHHHhhCCeEEEeccccc
Confidence 99754 33 36778899999999888775
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.48 E-value=1.9e-07 Score=87.23 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=77.6
Q ss_pred cCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhH
Q 014863 169 LGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (417)
+.|+.|++++||+||+++|+.. ..+++++|.+++++|++|++.+..... .+.+ ..-+++++|+..||..+...
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a~pe~- 208 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGCVPEM- 208 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSSCTTT-
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccCcCcc-
Confidence 5789999999999999999755 468999999999999999988876532 2222 13356899999999553222
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 245 r~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.|...++ ....+.+..+.+..+++.+|..
T Consensus 209 ------------~g~~li~--~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 209 ------------KGQVYIA--EGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ------------CCCEEEE--ESSSCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccceEEe--cCCCCHHHHHHHHHHHHHHCCC
Confidence 2444433 4457889999999999999964
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.35 E-value=1.3e-06 Score=77.99 Aligned_cols=154 Identities=12% Similarity=0.142 Sum_probs=93.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-------------------HcCceecCCCcCCH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAGFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G~~~~d~~~~~~ 172 (417)
|||+|||+|-+|.++|..|.+. |++|+ +++.+++..+... ..+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 7899999999999999999999 99975 6666554333222 112111 14678
Q ss_pred HhhhccCCeEEEeecch----------hHHHHHHH---HHhcCCCCcEEEEec----cchhh----hhhc-cccCCCCCC
Q 014863 173 YETISGSDLVLLLISDA----------AQADNYEK---IFSCMKPNSILGLSH----GFLLG----HLQS-MGLDFPKNI 230 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~----------a~~~Vl~e---I~p~Lk~GaiL~~a~----G~~i~----~~~~-~~i~~~~di 230 (417)
.+++++||+|++|+|.. ....+++. +...++++++|++-+ |+.-. .++. .+.....++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999842 12334443 445566788776554 43311 1111 111222332
Q ss_pred cEEEeccC--CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 231 GVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 231 ~VI~v~Pn--~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.+..+|- .+|....++.. .+.++. . ..+.+..+.++.+++.+...
T Consensus 151 -~~~~~PE~~~~G~a~~d~~~---------~~~iVi-G-~~~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 151 -GVGTNPEFLRESTAIKDYDF---------PPMTVI-G-ELDKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp -EEEECCCCCCTTSHHHHHHS---------CSCEEE-E-ESSHHHHHHHHHHHTTSSSC
T ss_pred -cchhhhhhhcccchhhhhcC---------CCeEEE-E-eCCHHHHHHHHHHHHhcCCC
Confidence 3566773 45666544433 232221 2 23578888999999988753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.31 E-value=1e-06 Score=76.81 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.+++ ++|.|||.|.||..++++|... |. ++.+++|+..+..+.+.+.|... ..+.+..+.+.++|+||.|
T Consensus 21 ~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~a 91 (159)
T d1gpja2 21 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVSA 91 (159)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEEC
T ss_pred Cccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEEe
Confidence 5677 9999999999999999999998 87 68889998777778888887653 1245677889999999999
Q ss_pred ecchh---HHHHHHHHHhcCCCC--cEEEEe
Q 014863 186 ISDAA---QADNYEKIFSCMKPN--SILGLS 211 (417)
Q Consensus 186 vpd~a---~~~Vl~eI~p~Lk~G--aiL~~a 211 (417)
|+... ..+.++.....-+.+ .+++|.
T Consensus 92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 92 TAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp CSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 98432 245666544332222 356664
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=4.8e-06 Score=71.52 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||||||+|.||.- +...++.. .+++++.. ++...+..+.+.+.++.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 48999999999975 56666654 15565543 444445556667777764 567888899999999999999
Q ss_pred hHHHHHHHHHh
Q 014863 190 AQADNYEKIFS 200 (417)
Q Consensus 190 a~~~Vl~eI~p 200 (417)
.+.++......
T Consensus 73 ~h~~~~~~al~ 83 (164)
T d1tlta1 73 SHFDVVSTLLN 83 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred hcccccccccc
Confidence 99988876544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.07 E-value=1.6e-05 Score=65.87 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=62.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCCH---Hhh-hccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~---~Ea-v~~ADiViLav 186 (417)
|||.|+|+|.+|..+++.|.+. |++|++.+.. +...+.+. +.|.....+...+. +++ ++++|.++.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d-~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCC-hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 7899999999999999999999 9998776554 44444444 34543321112232 222 68999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++...--+...+...+.+..+|..++
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEec
Confidence 98765444444555566666666444
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.01 E-value=7.7e-06 Score=70.38 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=58.6
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViLavpd~ 189 (417)
+||||||+|.+|.. +...|+.. .+.++++.++...+..+.+.+.+... ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 68999999999976 56666554 14566665555455566677777642 2456777765 679999999999
Q ss_pred hHHHHHHHHHh
Q 014863 190 AQADNYEKIFS 200 (417)
Q Consensus 190 a~~~Vl~eI~p 200 (417)
.+.++......
T Consensus 74 ~H~~~~~~al~ 84 (167)
T d1xeaa1 74 VHSTLAAFFLH 84 (167)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99998877654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=1.4e-05 Score=69.69 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=61.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhh--ccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav--~~ADiViLavpd 188 (417)
.||||||+|.+|..++..|+.. .+.+++...+.+ +++.+.+.+.++........+.++++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 4899999999999999999765 145665434443 34455566777532101246888887 467999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 014863 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
..+.++..... +.|.-|.
T Consensus 77 ~~h~~~~~~~l---~~g~~v~ 94 (184)
T d1ydwa1 77 SLHVEWAIKAA---EKGKHIL 94 (184)
T ss_dssp GGHHHHHHHHH---TTTCEEE
T ss_pred hhhcchhhhhh---hccceee
Confidence 99988876654 3455443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.87 E-value=2.3e-05 Score=64.57 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCCcCC-HHhh-hccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGD-IYET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~~~-~~Ea-v~~ADiViLavp 187 (417)
|++.|||+|.+|..+|+.|.+. |++|++.+. +.+..+.+...|.... |.+-.+ ++++ +++||.|+++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid~-d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDI-NEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEES-CHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEecC-cHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6799999999999999999999 998876554 4556666666675332 111111 2333 789999999999
Q ss_pred chhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 188 DAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
+.....++ ..+........++.-+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred chHHhHHHHHHHHHHcCCCcEEeecc
Confidence 77665443 33444444444555443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=2.2e-05 Score=68.49 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=55.9
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
||||||+|.+|.. ++..+++. +-..+++...+.+ ++....+...|... ...+.+|+++ +.|+|++++|+
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeeccccc
Confidence 7899999999986 67777764 0023554333433 33444455666542 1578899885 57999999999
Q ss_pred hhHHHHHHHHHh
Q 014863 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~a~~~Vl~eI~p 200 (417)
..+.+++.....
T Consensus 78 ~~h~~~~~~al~ 89 (181)
T d1zh8a1 78 ELNLPFIEKALR 89 (181)
T ss_dssp GGHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 999988877554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.84 E-value=2e-05 Score=66.39 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CC--CcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NG--TLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~--~~~~~~Eav~~ADiViLavp 187 (417)
|+|.|||+|.||.++|+.|.+. |++|++.+|+..+..+.+...+.... .. .....++.+...|+++.++|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 8999999999999999999999 99999999986665555554442210 00 01124567889999999999
Q ss_pred chhHHHHHHHH
Q 014863 188 DAAQADNYEKI 198 (417)
Q Consensus 188 d~a~~~Vl~eI 198 (417)
......+....
T Consensus 77 ~~~~~~~~~~~ 87 (182)
T d1e5qa1 77 YTFHATVIKSA 87 (182)
T ss_dssp GGGHHHHHHHH
T ss_pred chhhhHHHHHH
Confidence 87766655443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.57 E-value=3.2e-05 Score=66.99 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||||||+|.||..++..|++. .+++++...+.+.+. ....++.. ..+.++...+.|+|++++|+..+
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence 4789999999999999999875 156655433333221 22234442 45667778899999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEE
Q 014863 192 ADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~ 210 (417)
.++... .|+.|.-+++
T Consensus 72 ~~~a~~---aL~aG~~vv~ 87 (170)
T d1f06a1 72 IPEQAP---KFAQFACTVD 87 (170)
T ss_dssp HHHHHH---HHTTTSEEEC
T ss_pred HHHHHH---HHHCCCcEEE
Confidence 877654 3556765553
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.55 E-value=0.00021 Score=60.88 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc----CceecCC-CcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~d~-~~~~~~Eav~~ADiViL 184 (417)
+||+|||.|.+|.++|..|... ++ ++++.+...++....+.+. -+...+. ......+.+++||+|++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvi 80 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVI 80 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEE
Confidence 7999999999999999999988 75 6666555433333333321 1110000 01233467899999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 81 tag 83 (148)
T d1ldna1 81 CAG 83 (148)
T ss_dssp CCS
T ss_pred ecc
Confidence 764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.54 E-value=0.00024 Score=60.99 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=45.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
+||+|||.|..|.++|..|... ++ ++++.+.........+.+ .+.........+.++++++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 7999999999999999988887 76 666555443333223222 111110001245678899999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 977
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.46 E-value=0.00015 Score=62.59 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCC-ceEEEE-ecC-CchhHHHHHHcCceecCCCcCCHHhh-----hccCCeE
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSD-IVVKVG-LRK-GSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G-~~Vivg-~r~-~~~s~~~A~~~G~~~~d~~~~~~~Ea-----v~~ADiV 182 (417)
.||||||+|.+|.. +.+.|++. . .+++.. .++ .++..+.+++.|+... ..+.++. ..+.|+|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~------~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiV 75 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA------KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFV 75 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC------SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC------CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEE
Confidence 48999999999985 56677665 3 344333 333 3345677888888642 2223333 2468999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+++||...+.+-... ...++.|..+++...
T Consensus 76 f~ATpag~h~~~~~~-~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 76 FDATSASAHVQNEAL-LRQAKPGIRLIDLTP 105 (157)
T ss_dssp EECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred EEcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence 999999887653322 223478988887665
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.46 E-value=0.00027 Score=60.24 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|||.|.+|.++|..|... |+ ++++.++...+....+.+ .+... ....++ +.+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence 7999999999999999999998 74 666655543333333322 11110 012344 457899999
Q ss_pred EEeec
Q 014863 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99863
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.46 E-value=9.6e-05 Score=61.71 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=53.3
Q ss_pred CEEEEE-cccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC---ceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgII-G~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 689999 7999999999999999 9999999887544333322211 110 0012345556667788888888
Q ss_pred chhHHHHHH
Q 014863 188 DAAQADNYE 196 (417)
Q Consensus 188 d~a~~~Vl~ 196 (417)
.....+.+.
T Consensus 74 ~~~~~~~~~ 82 (212)
T d1jaya_ 74 WEHAIDTAR 82 (212)
T ss_dssp HHHHHHHHH
T ss_pred eeccchHHH
Confidence 777776554
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.43 E-value=0.00042 Score=58.30 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--C--ceecCC--CcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~d~--~~~~~~Eav~~ADiVi 183 (417)
|||+|||.|++|.+++..|... ++ ++.+.+....+....+... - +...+. ...+..+++++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 6899999999999999999888 64 6666655443333222221 0 000000 0124456789999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 995
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=7.6e-05 Score=64.55 Aligned_cols=95 Identities=19% Similarity=0.007 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC---ceecCCCcCCHH-hhhccCCe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIY-ETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~-Eav~~ADi 181 (417)
-.++| |+|.|||.|-.+.|++..|.+. |.+|.+.+|+.++..+.+.... ... ..+.. ....++|+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl 82 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL 82 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence 35678 9999999999999999999998 8888888887655555554322 111 11222 23467999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
||.+||.....+....-...++++.++.|+
T Consensus 83 iIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~ 112 (170)
T d1nyta1 83 IINATSSGISGDIPAIPSSLIHPGIYCYDM 112 (170)
T ss_dssp EEECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred eecccccCcccCCCCCcHHHhccCcEEEEe
Confidence 999999876533211112235555555543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.36 E-value=0.00015 Score=63.40 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=47.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec---------------CCCcCCHHhhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---------------d~~~~~~~Eav 176 (417)
|||+|||+|-+|.++|..+ .. |++|+ |.+.+++..+... .|..+. -....+..++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V~-g~Din~~~v~~l~-~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEVT-IVDILPSKVDKIN-NGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEEE-EECSCHHHHHHHH-TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcEE-EEECCHHHHHHHh-hcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 7899999999999999877 56 88875 7777665444332 222110 00123556778
Q ss_pred ccCCeEEEeecch
Q 014863 177 SGSDLVLLLISDA 189 (417)
Q Consensus 177 ~~ADiViLavpd~ 189 (417)
.++|+|+++||..
T Consensus 72 ~~~~ii~v~vpt~ 84 (196)
T d1dlja2 72 KEAELVIIATPTN 84 (196)
T ss_dssp HHCSEEEECCCCC
T ss_pred hccccccccCCcc
Confidence 8999999999843
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.35 E-value=0.00051 Score=58.53 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=43.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----cCceecCC--CcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d~--~~~~~~Eav~~ADiVi 183 (417)
|||+|||.|.+|.++|..|... |+ ++++.+....+....+.+ ..+...+. ...+ .+.+++||+|+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d-~~~l~~adiVV 74 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND-WAALADADVVI 74 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC-GGGGTTCSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccC-HHHhccccEEE
Confidence 7999999999999999999887 65 565555443332222221 11110000 0223 35689999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++..
T Consensus 75 itaG 78 (146)
T d1hyha1 75 STLG 78 (146)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9854
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.33 E-value=0.00021 Score=64.30 Aligned_cols=90 Identities=9% Similarity=0.106 Sum_probs=58.9
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecC-CchhHHHHHHcCceecC-CCcCCHHhhhc--cCCeEEEee
Q 014863 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~d-~~~~~~~Eav~--~ADiViLav 186 (417)
-+|||||+|.+|.. +...++.. .+++++...+. ..+..+.+++.|+.... ....|.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 48999999999975 45555543 14566544444 34445666677764210 01467888875 579999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+..+.++..+.+. .|.-|.
T Consensus 109 p~~~H~~~~~~al~---~gk~v~ 128 (221)
T d1h6da1 109 PNSLHAEFAIRAFK---AGKHVM 128 (221)
T ss_dssp CGGGHHHHHHHHHH---TTCEEE
T ss_pred chhhhhhHHHHhhh---cchhhh
Confidence 99999988766543 455443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=6.2e-05 Score=58.97 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=45.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcC-CHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~-~~~Eav~~ADiViL 184 (417)
.|+| |||+|||+|..|.+.|+.|... |.+|++.+++.. +..+.... +.... .. ..++.+.+.|+|++
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~d~vi~ 70 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLPE-AVERH---TGSLNDEWLMAADLIVA 70 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSSSCTTGGGSCT-TSCEE---ESBCCHHHHHHCSEEEE
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCcCchhHHHHhh-cccee---ecccchhhhccCCEEEE
Confidence 5789 9999999999999999999999 999988887533 22222222 22110 11 12445667777776
Q ss_pred e
Q 014863 185 L 185 (417)
Q Consensus 185 a 185 (417)
.
T Consensus 71 S 71 (93)
T d2jfga1 71 S 71 (93)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.30 E-value=0.00085 Score=56.77 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
|||+|||.|..|.++|..|..+ |. ++++.+...+..+..+.+ ......-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 7999999999999999999888 65 565555443333332221 111000001234 4688999999
Q ss_pred EEeec
Q 014863 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
++...
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 98874
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.28 E-value=0.00089 Score=57.98 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=46.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--CceecC----CCcCCHHhhhc
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEEN----GTLGDIYETIS 177 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~~d----~~~~~~~Eav~ 177 (417)
..++. +||+|||.|++|.++|..|... |+ ++++.+...+.....|.+. ...... ....+ .+.++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~ 87 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTA 87 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcc
Confidence 45566 8999999999999999999998 76 6666555433333333221 110000 01233 45688
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|+++.
T Consensus 88 ~adiVVitA 96 (160)
T d1i0za1 88 NSKIVVVTA 96 (160)
T ss_dssp TCSEEEECC
T ss_pred cccEEEEec
Confidence 999999965
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.24 E-value=0.00012 Score=70.89 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=66.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++++|||.|.|+..+++.+..-+ ++ +|.++.|...+..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECC
T ss_pred ceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceeecc
Confidence 78999999999999999987752 55 677777764444344332 24432 12678999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+......+++ ...++||..|.-+++..
T Consensus 202 as~s~~Pv~~--~~~l~pG~hI~aiGs~~ 228 (340)
T d1x7da_ 202 ADKAYATIIT--PDMLEPGMHLNAVGGDC 228 (340)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred ccCCCCcccc--hhhcCCCCEEeecccch
Confidence 7543333333 24578999887666553
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.23 E-value=0.00042 Score=62.20 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViL 184 (417)
..|+| +||+|.|+|++|..+|+.|.+. |.+|++.+ .+......+...|... .+.+++.. +||+++-
T Consensus 23 ~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d-~d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~iP 89 (201)
T d1c1da1 23 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVAD-TDTERVAHAVALGHTA-----VALEDVLSTPCDVFAP 89 (201)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEec-chHHHHHHHHhhcccc-----cCccccccccceeeec
Confidence 46999 9999999999999999999999 99887654 4556677888888773 45666654 7999886
Q ss_pred eecchhH-HHHHHH
Q 014863 185 LISDAAQ-ADNYEK 197 (417)
Q Consensus 185 avpd~a~-~~Vl~e 197 (417)
|--...+ .+..+.
T Consensus 90 cA~~~~I~~~~a~~ 103 (201)
T d1c1da1 90 CAMGGVITTEVART 103 (201)
T ss_dssp CSCSCCBCHHHHHH
T ss_pred ccccccccHHHHhh
Confidence 6544333 334433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.20 E-value=0.00088 Score=53.80 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|.+|.+-++.|.++ |.+|++......+.. ..+.+.++....+. .+ ++-+.++++|+.
T Consensus 8 l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (113)
T d1pjqa1 8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSCWLAIA 78 (113)
T ss_dssp ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTCSEEEE
T ss_pred EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeeccC-CC-HHHhCCCcEEee
Confidence 47899 9999999999999999999999 998887765544333 33333333321111 22 344778999999
Q ss_pred eecchhHH-HHHHHH
Q 014863 185 LISDAAQA-DNYEKI 198 (417)
Q Consensus 185 avpd~a~~-~Vl~eI 198 (417)
++.+.... ++++..
T Consensus 79 at~d~~~n~~i~~~a 93 (113)
T d1pjqa1 79 ATDDDTVNQRVSDAA 93 (113)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 99988775 455443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.20 E-value=0.0006 Score=57.67 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=42.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cCceecCC--CcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~d~--~~~~~~Eav~~ADiViLa 185 (417)
+||+|||.|++|.++|..|... ++ ++.+.+.........+.+ ++...... ......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 5899999999999999999988 65 676666554443344433 11110000 012234568899999998
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
.
T Consensus 76 a 76 (142)
T d1y6ja1 76 A 76 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=4.7e-05 Score=66.34 Aligned_cols=79 Identities=13% Similarity=-0.001 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.++| ++|.|||.|-.+.+++..|.+. +.+|.+.+|+.++..+.+...+....-......+....++|+||.+|
T Consensus 15 ~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~t 87 (171)
T d1p77a1 15 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINAT 87 (171)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECC
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecc
Confidence 5678 9999999999999999999876 67899999986665555554431100000111222457899999999
Q ss_pred cchhHH
Q 014863 187 SDAAQA 192 (417)
Q Consensus 187 pd~a~~ 192 (417)
|.....
T Consensus 88 p~g~~~ 93 (171)
T d1p77a1 88 SAGLSG 93 (171)
T ss_dssp CC----
T ss_pred cccccc
Confidence 977543
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.15 E-value=0.00032 Score=63.53 Aligned_cols=84 Identities=8% Similarity=0.136 Sum_probs=55.1
Q ss_pred CEEEEEcccchH----HHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 014863 112 NQIGVIGWGSQG----PAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG----~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViL 184 (417)
.||||||+|.+| ..+..+++.. ..+++++...+.+ .+..+.+.+.++.. .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 589999999854 5556666653 1145665434443 34445566666542 112468888875 5789999
Q ss_pred eecchhHHHHHHHHHh
Q 014863 185 LISDAAQADNYEKIFS 200 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p 200 (417)
++|+..+.++....+.
T Consensus 92 ~tp~~~h~~~~~~al~ 107 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILE 107 (237)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH
Confidence 9999999987766443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.14 E-value=0.0011 Score=55.79 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=44.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc--C-----ceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G-----FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~--G-----~~~~d~~~~~~~Eav~~ADiVi 183 (417)
+||+|||.|..|.++|..|... ++ ++++.+...+.....+.+. . ....-....+. +.++++|+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEE
Confidence 6999999999999999999887 65 7666554444333333331 1 11000002344 4578999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9984
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.13 E-value=0.001 Score=54.37 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=57.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+|+|||. |..|..+.++|++. |++|+-.+.+ .+. =.|... ..++.|+-..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~pVnP~-~~~-----i~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPN-YDE-----IEGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CSE-----ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEEEccc-ccc-----ccCccc----cccchhccccceEEEEEeC
Confidence 78999994 57799999999999 9986544433 221 147664 5678887778899999999
Q ss_pred chhHHHHHHHHHh
Q 014863 188 DAAQADNYEKIFS 200 (417)
Q Consensus 188 d~a~~~Vl~eI~p 200 (417)
+....++++++..
T Consensus 66 ~~~~~~~l~~~~~ 78 (116)
T d1y81a1 66 PKVGLQVAKEAVE 78 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998664
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.12 E-value=2.7e-05 Score=67.23 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=50.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~ 189 (417)
.||||||+|.||..++.+|... .+. ..-.++..+... +.+...++. ..+.+|++. +.|+|+++||+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~-~~~--~~~~~~~~~~~~---~~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDP-RSA--AFLNLIGFVSRR---ELGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSH-HHH--TTEEEEEEECSS---CCCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhC-CCC--cEEEEEeccchH---HHHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 4899999999999999888764 110 111122322211 111123333 357888875 568999999999
Q ss_pred hHHHHHHHHHh
Q 014863 190 AQADNYEKIFS 200 (417)
Q Consensus 190 a~~~Vl~eI~p 200 (417)
.+.++......
T Consensus 77 ~H~~~~~~al~ 87 (172)
T d1lc0a1 77 SHEDYIRQFLQ 87 (172)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99988776544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.11 E-value=0.0011 Score=56.74 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=44.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc-------CceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.||+|||.|..|.++|..|..+ ++ ++++.+.........+.+. +..... ...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v-~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV-SGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE-EEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcEE-EecccccccCCCcEEE
Confidence 6999999999999999988877 65 6655555444333333221 111000 0123456789999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.08 E-value=0.00035 Score=60.25 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=52.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++ ++|.|||.|-.|.|++..|++. |. +|.+.+|+.++....+...+... .... -..++|+||.+||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 56 8999999999999999999998 86 68888887666666666666653 2222 2357999999999
Q ss_pred ch
Q 014863 188 DA 189 (417)
Q Consensus 188 d~ 189 (417)
..
T Consensus 83 iG 84 (167)
T d1npya1 83 IG 84 (167)
T ss_dssp TT
T ss_pred cC
Confidence 53
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.06 E-value=0.00098 Score=58.61 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=58.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHHc-----------------CceecCCCcCCH
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAA-----------------GFTEENGTLGDI 172 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~~-----------------G~~~~d~~~~~~ 172 (417)
|-||||.|+|-||+.+++.+.++ .+++++..++..+. .......+ ++.. ..+.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v----~g~~ 71 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV----AGTV 71 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC----CCCH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec----CCch
Confidence 56899999999999999999876 14676655554332 22222222 2222 3456
Q ss_pred HhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.++..++|+|+-|||.....+-.+ .|++.|+-+++++
T Consensus 72 ~~~~~~vDiViecTG~f~~~e~a~---~hl~~G~KvIi~~ 108 (178)
T d1b7go1 72 EDLIKTSDIVVDTTPNGVGAQYKP---IYLQLQRNAIFQG 108 (178)
T ss_dssp HHHHHHCSEEEECCSTTHHHHHHH---HHHHTTCEEEECT
T ss_pred hhhhhcCCEEEECCCCcCCHHHHH---HHHHcCCEEEEEC
Confidence 777789999999999866655443 4445565455443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.0022 Score=54.45 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh--------cc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SG 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav--------~~ 178 (417)
+| .+|.|+|.|.+|...++-++.. |. +|++.+ .++...+.|++.|+... +....+..+.. ..
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d-~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTD-LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEE-SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEecc-CCHHHHHHHHHhCCcccccccccccccccccccccCCCC
Confidence 46 8999999999999999999988 88 565554 44667889999997421 11112333332 25
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+||-++.... .++.....+++|-.+++.+
T Consensus 98 ~Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 98 PEVTIECTGAEA---SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred ceEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence 899999998644 4455556677887766554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.00 E-value=0.0017 Score=55.02 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=43.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcC----ceecCC--CcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG--TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~d~--~~~~~~Eav~~ADiV 182 (417)
.||+|||. |.+|.++|..|... ++ ++++.+... ....+.+.- +..... ...+..|++++||+|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiDi~~--~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CeEEEECCCChHHHHHHHHHHhC------CccceEEEEeccc--cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 38999995 99999999999988 76 555554432 233333311 100000 124567889999999
Q ss_pred EEeec
Q 014863 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+++.-
T Consensus 73 Vitag 77 (144)
T d1mlda1 73 VIPAG 77 (144)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99853
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00063 Score=57.29 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=43.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
|||+|||.|+.|.++|..|..+ ++ ++.+.+....+....+.+ ..+........+..+++++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6999999999999999999888 65 665555443333333322 11110000012334678999999998
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.98 E-value=0.00097 Score=55.56 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=67.1
Q ss_pred cCCCCEEEEEcc----cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 108 FNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
|.= ++|+|||. |..|..+.++|++. | .+|+-.+.+... =.|... +.++.|+=...|++
T Consensus 6 f~P-ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~~~------i~G~~~----y~sl~dlp~~vDlv 68 (129)
T d2csua1 6 FNP-KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEEE------VQGVKA----YKSVKDIPDEIDLA 68 (129)
T ss_dssp TSC-SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCSE------ETTEEC----BSSTTSCSSCCSEE
T ss_pred CCC-CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCccc------cCCeEe----ecchhhcCCCCceE
Confidence 444 89999996 89999999999876 5 466554443221 146664 67788877789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
++++|+....++++++... .-..++++++||.
T Consensus 69 vi~vp~~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 69 IIVVPKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp EECSCHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred EEecChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 9999999999999886653 2344788899884
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.94 E-value=0.0026 Score=53.61 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=64.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||. +..|..++.+|++. |++|+-.+.+ .. .=.|... ..+++|+-..-|+|++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~-~~-----~i~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPK-YE-----EVLGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CS-----EETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCc-cc-----ccCCCcc----cccccccCccceEEEEEeC
Confidence 89999995 57899999999999 9986544433 21 1246664 6788887778999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+..+.++++++... ....++...++++
T Consensus 84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~~ 110 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAKVVWFQYNTYN 110 (139)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECTTCCC
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeccccC
Confidence 99999999986653 2333344445554
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.87 E-value=0.0018 Score=55.90 Aligned_cols=71 Identities=20% Similarity=0.153 Sum_probs=44.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc-------CceecCCCcCCHHhhhcc
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~Eav~~ 178 (417)
++- .||+|||.|++|.++|..|... |+ ++++.+.........+.+. +... .....+ .+.+++
T Consensus 17 ~~~-~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~~~~~d-~~~~~~ 87 (159)
T d2ldxa1 17 LSR-CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-IVFGKD-YNVSAN 87 (159)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-EEEESS-GGGGTT
T ss_pred CCC-CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-EEeccc-hhhhcc
Confidence 344 7999999999999999999988 76 6666554433332222221 1110 001234 456689
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
||+|+++.-
T Consensus 88 adivvitag 96 (159)
T d2ldxa1 88 SKLVIITAG 96 (159)
T ss_dssp EEEEEECCS
T ss_pred ccEEEEecc
Confidence 999999864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.84 E-value=0.00044 Score=60.69 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=64.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC---ceecCCCcCCHHhhhccCCeEEEeec-
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS- 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ADiViLavp- 187 (417)
-|+.|||.|.-|..=++..+.- |.+|.+.+.+ ....+..+... .......-..+++.+++||+||-++-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~-~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDIN-VERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCc-HHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 6999999999999888888877 9888877665 33344433322 11100001135788999999998764
Q ss_pred -chhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 188 -DAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 -d~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
-...+.++ ++....||||++|+|.+
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcccCeeecHHHHhhcCCCcEEEEee
Confidence 33334555 46888999999999885
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.83 E-value=0.0015 Score=56.01 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=64.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~AD 180 (417)
.-.| .+|.|+|.|.+|...++-++.. |..+++..+.++...+.+++.|.... +....+..+.++ ..|
T Consensus 26 ~~~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 26 VTPA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp CCTT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred CCCC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 3456 8999999999999999999988 88666666665667888999886421 111233444433 279
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+||-++..... ++.....++++-.+++.
T Consensus 99 ~vid~~G~~~~---~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 99 FALESTGSPEI---LKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEECSCCHHH---HHHHHHTEEEEEEEEEC
T ss_pred EEEEcCCcHHH---HHHHHhcccCceEEEEE
Confidence 99999985433 33444456666665543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.83 E-value=0.0011 Score=55.51 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=79.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||. +..|..+.++|++. |+++....-+... + .-.|... ..+..|.-..-|+|++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~~--~--~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQG--E--ELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGTT--S--EETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecccc--c--eeeceec----ccchhhccCCCceEEEecc
Confidence 88999996 68999999999999 9987665433110 0 1146554 5677777677899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHh
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (417)
+....+++++.... ... .+.+..|+.-..+.+ +.-..+++|| +|||+.-+..++|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k-~i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPG-LVWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCS-CEEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCC-eEEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 99999999986653 233 355666763111111 0112356665 89998887777764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.77 E-value=0.0013 Score=58.34 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=63.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC---CCcC------------------
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLG------------------ 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d---~~~~------------------ 170 (417)
-||.|||.|..|..=++-.+.- |-+|.+.+.+ ....++.+..|-...+ ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~-~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEecc-HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 4899999999998877777666 8888776654 4456666666532100 0000
Q ss_pred ----CHHhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 171 ----DIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ----~~~Eav~~ADiViLav--pd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+.+.+++||+||-++ |-...+.++ ++....||||++|+|.+
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 1234588999999655 444444555 46888999999999886
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.64 E-value=0.0093 Score=50.08 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=62.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec---CCCcCCHHh---hh-----
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI----- 176 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---d~~~~~~~E---av----- 176 (417)
-.| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.|++.|.... +....+..+ .+
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~~~-~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTARS-PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccchH-HHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 356 8999999999999999999888 9887765554 556788998886321 111112222 12
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
..+|+||-++.... .++.....++++-.|+..
T Consensus 97 ~g~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGNEK---CITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCChH---HHHHHHHHHhcCCceEEE
Confidence 34899999997543 344445567777776644
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.62 E-value=0.0014 Score=55.53 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=43.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH--cC--ceecCC--CcCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~d~--~~~~~~Eav~~ADiVi 183 (417)
.||+|||.|++|.++|..|..+ ++ ++++.+....+....+.+ +. +.. .. ...+..+.+++||+|+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~i~~~~~~~~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYP-TVSIDGSDDPEICRDADMVV 74 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGST-TCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCC-CceeecCCCHHHhhCCcEEE
Confidence 5899999999999999999888 76 666555443332222221 11 110 00 0122345688999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.-
T Consensus 75 itaG 78 (143)
T d1llda1 75 ITAG 78 (143)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9863
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.57 E-value=0.0039 Score=49.23 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCEEEEEcccchH-HHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec-c
Q 014863 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-D 188 (417)
Q Consensus 111 ~kkIgIIG~G~mG-~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp-d 188 (417)
+++|=|||.|=.| .++|+-|++. |++|...+....+..+...+.|+... .....+-+++.|+||...- +
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECCCcC
Confidence 4899999999999 6779999999 99987766665666677778898753 3444556789998877543 3
Q ss_pred hhHHHHH
Q 014863 189 AAQADNY 195 (417)
Q Consensus 189 ~a~~~Vl 195 (417)
...+++.
T Consensus 79 ~~npel~ 85 (96)
T d1p3da1 79 DDNPELV 85 (96)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 3344444
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00075 Score=58.65 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchh---HHHHHHcC----ceecCCCcCC---HHh
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS---FAEARAAG----FTEENGTLGD---IYE 174 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s---~~~A~~~G----~~~~d~~~~~---~~E 174 (417)
..++| ++|.|||.|-.|.+++..|.+. |. ++.+.+|..++. ...+.+.+ ....-....+ ..+
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 35788 9999999999999999999998 87 677788864422 12222211 1100000122 345
Q ss_pred hhccCCeEEEeecchhHHHHHHHH---HhcCCCCcEEEEe
Q 014863 175 TISGSDLVLLLISDAAQADNYEKI---FSCMKPNSILGLS 211 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~Vl~eI---~p~Lk~GaiL~~a 211 (417)
.+..+|+||.+||.......-+.+ ...++++.++.|+
T Consensus 87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di 126 (182)
T d1vi2a1 87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTEC 126 (182)
T ss_dssp HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEEC
T ss_pred hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHh
Confidence 678999999999965432111111 2345666666644
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.41 E-value=0.0021 Score=60.94 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhH---HHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++++|||.|.|+..+++.|..-+ .+ +|.++.|..++.. +.....++.. ..+.++++.+||+|+.+||
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT~ 196 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTTP 196 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECCC
T ss_pred cEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEecc
Confidence 78999999999999999997751 34 6777777644332 3333445543 4567788999999999998
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
-.. .+++ ...+++|+.|..++...
T Consensus 197 s~~--P~~~--~~~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 197 SRK--PVVK--AEWVEEGTHINAIGADG 220 (320)
T ss_dssp CSS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred Ccc--cccc--hhhcCCCCeEeecCCcc
Confidence 421 1222 24578999887666543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.37 E-value=0.002 Score=55.51 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=61.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------cc
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~ 178 (417)
.-+| .+|.|+|+|-+|...++-++.. |. +|+ ..+.+++..+.+++.|.... +..-.+..+.+ ..
T Consensus 25 ~~~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi-~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 25 IEMG-SSVVVIGIGAVGLMGIAGAKLR------GAGRII-GVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHTT------TCSCEE-EECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCC-CEEEEEcCCcchhhhhhhhhcc------cccccc-cccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccC
Confidence 3457 8999999999999999999988 87 454 45555666889999996320 11112233332 23
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.|+||-++.... .+++....++++-.+++.
T Consensus 97 ~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 97 VDRVIMAGGGSE---TLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred cceEEEccCCHH---HHHHHHHHHhcCCEEEEE
Confidence 899999998543 333434556677666654
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.33 E-value=0.0045 Score=51.17 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=65.7
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCc------hhHHHHHH----cCceec
Q 014863 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEARA----AGFTEE 165 (417)
Q Consensus 106 ~~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~------~s~~~A~~----~G~~~~ 165 (417)
+.+.+ +||+|+|+ ++....++..|... |.+|.+++..-+ ...+.... .+..
T Consensus 9 ~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-- 79 (136)
T d1mv8a3 9 TSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL-- 79 (136)
T ss_dssp TTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT--
T ss_pred HhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce--
Confidence 45667 99999998 67888899999988 998877653100 00111110 1111
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.+.+..+++.++|+|+++++.....++ ...++++.+|+|.-|+
T Consensus 80 --~~~~~~e~i~~~D~ivi~t~h~~f~~l----~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 80 --LVSDLDEVVASSDVLVLGNGDELFVDL----VNKTPSGKKLVDLVGF 122 (136)
T ss_dssp --BCSCHHHHHHHCSEEEECSCCGGGHHH----HHSCCTTCEEEESSSC
T ss_pred --eehhhhhhhhhceEEEEEeCCHHHHHH----HHHhcCCCEEEECCCC
Confidence 146899999999999999998876543 4456778899998876
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.0041 Score=53.28 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=61.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhh---h-----
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET---I----- 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Ea---v----- 176 (417)
.-+| .+|.|+|.|.+|...++-++.. |. +|++..+ ++...+.+++.|.... +..-.+..+. +
T Consensus 26 ~~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 26 SFAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAG-SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITH 97 (182)
T ss_dssp CCBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred CCCC-CEEEEECCCccchhheeccccc------cccccccccc-ccccccccccccceEEEeccccchHHHHHHHHHhhC
Confidence 3457 9999999999999999999888 87 5655554 4566789999986321 1111233222 2
Q ss_pred -ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 177 -SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 -~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
...|+||-++.... .++.....+++|-.+++.
T Consensus 98 ~~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 98 GRGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TSCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 13799999987532 234444556677666544
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0062 Score=51.63 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=65.4
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
||||||||. |..|.-+.+.|.+.. .+. .++....++.+ +............ ...+ .+..+++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~---~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~---~~~~-~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEER---DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ---DAFD-LEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---GGGGSEEEEEESSSTTSBCCGGGTCCCBCE---ETTC-HHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCC---CCCeeEEEEeeccccccccccccCCceeee---cccc-hhhhhcCcEEEEec
Confidence 799999995 999999998775430 001 14433332211 1111111111110 0112 24578999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
|.....++.+++... ..+.+|++.++. . +-+-+|..+-|---.........+|
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss~----f-------R~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAASS----L-------RMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSST----T-------TTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCcc----c-------ccCCCCcEECCCcCHHHHHHHHHcC
Confidence 988888887776542 222356666553 1 1122667777744333333334443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0022 Score=55.76 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=49.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEee
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLav 186 (417)
||||.|+| .|.+|.++++.|.++ |++|++..|+.++... ....++......+.+ ..++++++|+||.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhccc-ccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 69999999 699999999999999 9999888876443211 112333221112233 456899999999988
Q ss_pred c
Q 014863 187 S 187 (417)
Q Consensus 187 p 187 (417)
.
T Consensus 76 g 76 (205)
T d1hdoa_ 76 G 76 (205)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.013 Score=48.59 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=50.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh---HHHHHHcCceecCCCcCCHH----hhhccCCeEEEe
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLa 185 (417)
.|-|+|||..|..+++.|.+. |.++++......+. .+.....|+....+...+.+ .-+.+||.|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 589999999999999999999 98877766543322 23334456643222222322 236789999999
Q ss_pred ecchhHH
Q 014863 186 ISDAAQA 192 (417)
Q Consensus 186 vpd~a~~ 192 (417)
+++....
T Consensus 79 ~~~d~~n 85 (153)
T d1id1a_ 79 SDNDADN 85 (153)
T ss_dssp SSCHHHH
T ss_pred cccHHHH
Confidence 9987664
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.18 E-value=0.014 Score=50.04 Aligned_cols=75 Identities=17% Similarity=0.082 Sum_probs=40.6
Q ss_pred CEEEEEcccchHHH--HHHHHHhhhhhhcCCc-eEEEEecCCchhHHHH---------HHcCceecCCCcCCHHhhhccC
Q 014863 112 NQIGVIGWGSQGPA--QAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---------RAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~A--iA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A---------~~~G~~~~d~~~~~~~Eav~~A 179 (417)
+||+|||.|+.|.+ ++.-+... + .+.. ++++.+....+...++ ...+....-....+..+++++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~--~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-H--ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-T--TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-c--ccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCC
Confidence 68999999998743 44444443 1 0112 5544443322211111 1122221111245778899999
Q ss_pred CeEEEeecch
Q 014863 180 DLVLLLISDA 189 (417)
Q Consensus 180 DiViLavpd~ 189 (417)
|+|+++....
T Consensus 79 DvVv~ta~~~ 88 (169)
T d1s6ya1 79 DFVTTQFRVG 88 (169)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEccccC
Confidence 9999999643
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.0075 Score=47.05 Aligned_cols=67 Identities=19% Similarity=0.072 Sum_probs=51.5
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||=|||.|=+|. ++|+-|++. |++|...++...+..+..++.|+... ..-..+-+.++|+||...-
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEecC
Confidence 7899999999997 789999999 99988777766666777888998642 2233455688998877543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.0058 Score=50.66 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=63.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||+|+|+ |.||.++++.+.+. +++++.+.+.+ ..+.+.++|+||=-+.|+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence 68999996 99999999988888 88876654421 1233567899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCc
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~p 240 (417)
..+.++....+=. .+|+=+.|++-..++.. ...-+.+ =|..+||++
T Consensus 54 ~~~~l~~~~~~~~--p~ViGTTG~~~~~~~~i-~~~ak~~-pv~~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRA--GLVLGTTALKEEHLQML-RELSKEV-PVVQAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTC--EEEECCCSCCHHHHHHH-HHHTTTS-EEEECSCTH
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCCHHHHHHH-HHHHhhC-CEEeeeccC
Confidence 9988876544322 24555568763322210 0112232 345677776
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.12 E-value=0.0098 Score=51.57 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=57.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCC--------------CcCCHHhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENG--------------TLGDIYET 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~--------------~~~~~~Ea 175 (417)
|+||||-|+|.||+.+.+.|.+. .+++++.-++.. ......+...++..... ...+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 78999999999999999988776 035655444443 22234445555432100 01244566
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.+++|+|+=|||.....+-.+ +|++.|.-+++.
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~---~hl~~G~K~vi~ 108 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLK---MYKEKGIKAIFQ 108 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHH---HHHHTTCEEEEC
T ss_pred hcCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEE
Confidence 788999999999876555443 445556544444
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.11 E-value=0.0019 Score=55.64 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC----cee-cCCCcCCHHhhhccCC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE-ENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~-~d~~~~~~~Eav~~AD 180 (417)
..++| |+|.|||.|-.+.|++..|.+. | +|.|.+|+.++..+.+.... ... ..-...+.......+|
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD 85 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence 34789 9999999999999999999665 6 78888887554444333211 000 0000234555678899
Q ss_pred eEEEeecchh
Q 014863 181 LVLLLISDAA 190 (417)
Q Consensus 181 iViLavpd~a 190 (417)
+||.++|...
T Consensus 86 liIn~tp~g~ 95 (177)
T d1nvta1 86 IIINATPIGM 95 (177)
T ss_dssp EEEECSCTTC
T ss_pred hhccCCcccc
Confidence 9999999653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.10 E-value=0.0051 Score=56.11 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=53.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVL 183 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiVi 183 (417)
.+.|+| ++|+|-|+|++|..+|+.|.+. |.++++.+.+...........|... .++++. -.+|||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFA 101 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEec
Confidence 357899 9999999999999999999999 9988766544333333444456653 344443 35799999
Q ss_pred EeecchhH
Q 014863 184 LLISDAAQ 191 (417)
Q Consensus 184 Lavpd~a~ 191 (417)
-|--...+
T Consensus 102 PcA~~~~I 109 (230)
T d1leha1 102 PCALGAVL 109 (230)
T ss_dssp ECSCSCCB
T ss_pred cccccccc
Confidence 87654444
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.93 E-value=0.012 Score=50.92 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=52.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecC--------------CCcCCHHhhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN--------------GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d--------------~~~~~~~Eav 176 (417)
.||||.|+|.||+.+.+.+.+. ..++++..++..+ .....+..+++.... ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 6999999999999999999775 1456655554432 223445555532100 0023556677
Q ss_pred ccCCeEEEeecchhHHHHHH
Q 014863 177 SGSDLVLLLISDAAQADNYE 196 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~ 196 (417)
.++|+|+=|++.....+-.+
T Consensus 78 ~~vDvViEcTG~f~~~~~~~ 97 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKP 97 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHH
T ss_pred ccCCEEEECCCCCCCHHHHH
Confidence 89999999999877766554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.91 E-value=0.0076 Score=50.92 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=41.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--hhHHHHHH----cCceecCCC----cCCHHhhhcc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARA----AGFTEENGT----LGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~--~s~~~A~~----~G~~~~d~~----~~~~~Eav~~ 178 (417)
|||+|||. |.+|.++|..|..+ ++ ++.+.+.... +.+..+.+ ......+.. ..+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 68999995 99999999999888 75 6666555422 11111111 111100000 1223467899
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
||+|+++.
T Consensus 75 aDvVVitA 82 (145)
T d1hyea1 75 SDVVIITS 82 (145)
T ss_dssp CSEEEECC
T ss_pred ceEEEEec
Confidence 99999983
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.69 E-value=0.0089 Score=50.67 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh-----ccCCeE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDLV 182 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav-----~~ADiV 182 (417)
.| .+|.|+|.|.+|...++-++.. |..+++..+.++...+.+++.|.... +..-.+.++.. ...|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 46 8999999999999999999888 86555555555666888888886421 11111122222 247899
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|-++.... .++.....++++-.++.+
T Consensus 105 id~~g~~~---~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 105 MDFVGSQA---TVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EESSCCHH---HHHHGGGGEEEEEEEEEC
T ss_pred EEecCcch---HHHHHHHHHhCCCEEEEE
Confidence 98888654 345556667777666544
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0096 Score=51.75 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=57.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|.|||-+. .|..++.-|... |..|.+.... ..+..+.+++||+||.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence 35789 9999999875 999999999888 8887765432 1256677899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... ++ ...+|+|++|++++
T Consensus 87 a~G~p~~---i~--~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 87 AVGKPGF---IP--GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred hccCccc---cc--ccccCCCcEEEecC
Confidence 9974322 11 34679999888774
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.68 E-value=0.016 Score=49.84 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=41.5
Q ss_pred CEEEEEcccchHHHHH--HHHHhhhhhhcCCceEEEEecCCchhHHH--------HHHcCceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQA--QNLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA--~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~--------A~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|+.|.+.+ ..|... +...+.++++.+. +++..+. ....+....-....|.+|++++||+
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~--~~l~~~eivL~Di-d~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTVTLMDI-DEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEEEEECS-CHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc--cccCCCEEEEEeC-CchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence 7999999999997643 233322 0000236655544 3322211 1112211100124688999999999
Q ss_pred EEEeecch
Q 014863 182 VLLLISDA 189 (417)
Q Consensus 182 ViLavpd~ 189 (417)
|++.+-..
T Consensus 80 Vv~~~~~g 87 (171)
T d1obba1 80 VINTAMVG 87 (171)
T ss_dssp EEECCCTT
T ss_pred Eeeecccc
Confidence 99987543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=0.019 Score=47.88 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=61.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh----ccCCeE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav----~~ADiV 182 (417)
-+| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... +..-.+..+.+ ...|.+
T Consensus 26 ~~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~~~-~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 26 RPG-QWVAISGIGGLGHVAVQYARAM------GLHVAAIDID-DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCC-CEEEEeeccccHHHHHHHHHHc------CCccceecch-hhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 346 8999999999999999999888 9887766544 556788999887421 11122333332 335666
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+.++... +.++...+.++++-.++..
T Consensus 98 i~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 98 LVTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred ccccccc---hHHHHHHHHhcCCcEEEEE
Confidence 6666543 3455666777777766644
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.62 E-value=0.036 Score=47.42 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=58.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCc-C-CHHhhh-----ccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-G-DIYETI-----SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~-~~~Eav-----~~A 179 (417)
-.| .+|.|+|+|-+|...++-++.. |...++..+.++...+.|++.|.... +... . ..++.. ..+
T Consensus 27 ~~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 27 TPG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCC
Confidence 356 8999999999999999999988 87544455555667899999997531 1000 1 112122 457
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN 205 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G 205 (417)
|+||-++.... .+++-...+++|
T Consensus 100 d~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 100 DYSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp SEEEESSCCHH---HHHHHHHTBCTT
T ss_pred cEEEEecccch---HHHHHHHHhhcC
Confidence 99999997643 344444556664
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.57 E-value=0.033 Score=46.55 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-C--CCcCCHHhhh-----ccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N--GTLGDIYETI-----SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d--~~~~~~~Eav-----~~A 179 (417)
-+| .+|.|+|.|-+|...++-++.. |..+++..+.+++..+.+++.|.... + +...+..+.+ ..+
T Consensus 27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 356 8999999999999999999888 87555666666667899999996531 0 0011222222 458
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+|+-++..... ++.....+++|..++..
T Consensus 100 D~vid~~G~~~~---~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 100 DYSFECIGNVKV---MRAALEACHKGWGVSVV 128 (176)
T ss_dssp SEEEECSCCHHH---HHHHHHTBCTTTCEEEE
T ss_pred cEeeecCCCHHH---HHHHHHhhcCCceeEEE
Confidence 999999976543 33344456666554433
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.55 E-value=0.024 Score=47.08 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHH----hhhccCCeEE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETISGSDLVL 183 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~----Eav~~ADiVi 183 (417)
+| .+|.|+|.|.+|...++.++.. |.+|++..+ +....+.+++.|+... +..-.+.. +.-.+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~~-~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDI-GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccCC-CHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 56 8999999999999999988888 888766554 4556788999987532 11111222 2235567777
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.++... +.++...+.++++..+++.
T Consensus 99 ~~~~~~---~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 99 VTAVSK---PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred eecCCH---HHHHHHHHHhccCCceEec
Confidence 766543 4556666777787776654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.0055 Score=51.89 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cCC-HHhhhccCCeEEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGD-IYETISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~-~~Eav~~ADiViL 184 (417)
-+| .+|.|+|.|.+|...++-++.. |.+|++..++ ....+.+++.|.... +.. ..+ .+......|+|+.
T Consensus 26 ~~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~~-~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 26 GPG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp STT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred CCC-CEEEEECCCCcchhHHHHhhhc------cccccccccc-hhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence 356 9999999999999999988888 9988776655 456788999886421 000 011 1223456799988
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++...... .++.....++++-.++..
T Consensus 98 ~~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 98 CASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CCSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred EecCCccc-hHHHHHHHhhccceEEEe
Confidence 86643211 133445566676555543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.39 E-value=0.03 Score=47.05 Aligned_cols=74 Identities=9% Similarity=-0.045 Sum_probs=41.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh-hhhhcCCceEEEEecCCchhHHHHHH------cCceec---CCCcCCHHhhhccCC
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARA------AGFTEE---NGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s-~~~~~~G~~Vivg~r~~~~s~~~A~~------~G~~~~---d~~~~~~~Eav~~AD 180 (417)
+||+||| .|+.|.++|..|... +-....-.++...+.. +...+++. +..... .....+..++++++|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 6999999 599999999999764 0000000133333322 22222221 111000 001346778999999
Q ss_pred eEEEeec
Q 014863 181 LVLLLIS 187 (417)
Q Consensus 181 iViLavp 187 (417)
+|+++--
T Consensus 82 vVVitag 88 (154)
T d5mdha1 82 VAILVGS 88 (154)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999873
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.39 E-value=0.037 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s 133 (417)
+||+|||. |.+|.+++..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 59999996 99999999999876
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.017 Score=48.62 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=40.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--cCcee-cCC--CcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTE-ENG--TLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~-~d~--~~~~~~Eav~~ADiViLa 185 (417)
|||+|||. |.+|.++|..|...+ +...++.+.+.. +.....+.+ ..... ... ...+..+++++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D~~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEECSS-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEeccc-ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 69999995 999999998875330 112366555543 333333332 11000 000 012334678999999998
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.30 E-value=0.019 Score=48.21 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=40.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--hhHHHHHHc----Cceec-CCCcCCHHhhhccCCe
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAA----GFTEE-NGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~--~s~~~A~~~----G~~~~-d~~~~~~~Eav~~ADi 181 (417)
.||+||| .|.+|.++|..|..+ ++ ++++.+.... ..+..+.+. .+... .-...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 3899999 699999999999988 76 5555443211 222222221 11100 0012344 45689999
Q ss_pred EEEee
Q 014863 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99874
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.021 Score=49.58 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..+..+.+++||+|+.+
T Consensus 36 ~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~a 89 (170)
T d1a4ia1 36 PIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVVA 89 (170)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEEC
T ss_pred cccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhhc
Confidence 5889 999999987 5999999999998 8888765432 12455678899999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... ++ ..++++|.+|++++
T Consensus 90 ~G~~~~---i~--~~~vk~g~iviDvg 111 (170)
T d1a4ia1 90 TGQPEM---VK--GEWIKPGAIVIDCG 111 (170)
T ss_dssp CCCTTC---BC--GGGSCTTCEEEECC
T ss_pred cccccc---cc--cccccCCCeEeccC
Confidence 985332 21 34679999988873
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.25 E-value=0.021 Score=46.13 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=55.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
|-|-|+|||..|..+++.|+.. + +++... ++...+.....|+....+...+.+ .-+.+|+.|+++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~--i~vi~~-d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------E--VFVLAE-DENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------G--EEEEES-CTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------C--CEEEEc-chHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 3478999999999999999665 4 334333 344456667778654322223332 13688999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEe
Q 014863 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~G-aiL~~a 211 (417)
+....-.+-.....+.|. .+++-+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred chhhhHHHHHHHHHHCCCceEEEEE
Confidence 877654333322233333 455544
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.21 E-value=0.019 Score=49.51 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=53.0
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----C--ceecCC-CcCCHHhhhc
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENG-TLGDIYETIS 177 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G--~~~~d~-~~~~~~Eav~ 177 (417)
..|+| |+|.|.| .|-+|.++++.|.+. |.+|++..|+.++..+.+... . +...|- ...+.++++.
T Consensus 19 ~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 19 GSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp SCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence 67899 9999999 689999999999999 999988888755443333321 1 111010 1123556788
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
++|+||.+..
T Consensus 92 ~iDilin~Ag 101 (191)
T d1luaa1 92 GAHFVFTAGA 101 (191)
T ss_dssp TCSEEEECCC
T ss_pred CcCeeeecCc
Confidence 9999998865
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=95.20 E-value=0.012 Score=50.04 Aligned_cols=122 Identities=11% Similarity=-0.034 Sum_probs=65.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh--hhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s--~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
||||||| .|..|.-+.+.|.+. ++ ..++.....+.+ ..+....+............+..+++|+||+|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~~~--~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQI--GVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSCC--SSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEeccccc--cccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 6899999 799999999877643 00 124432222211 11111111110000011223557899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
....++.+++... ..+..|++.++- ++-+-++..+-|-.-........++|
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSsd-----------fR~~~dvpl~lPEiN~~~I~~a~~~~ 125 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAST-----------LRMDKEAIITLDPVNLKQILHGIHHG 125 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSST-----------TTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCcc-----------ccccCCceEEeCCcCHHHHHHHHHcC
Confidence 9888888776543 122356666552 11122677777754444444334443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.11 E-value=0.026 Score=49.24 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=65.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-CCcCCHHhhh------ccC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETI------SGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-~~~~~~~Eav------~~A 179 (417)
.-.| .+|.|+|+|.+|...++.++.. |...++..+.+....+.|++.|..... ..-.+..+.+ ..+
T Consensus 23 v~~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 23 VGPG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 3356 8999999999998888888777 763344444556668999999976421 1112332222 247
Q ss_pred CeEEEeecch------------hHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDA------------AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~------------a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|++|-++--+ ...+.++.....++++-.|++.+
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9999988522 12457777777788887776554
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.04 E-value=0.046 Score=46.93 Aligned_cols=75 Identities=21% Similarity=0.046 Sum_probs=40.4
Q ss_pred CEEEEEcccchHHHHH-HHHHhhhhhhcCCceEEEEecCCchhHH-HHH-------HcCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA-EAR-------AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA-~~Lr~s~~~~~~G~~Vivg~r~~~~s~~-~A~-------~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
.||+|||.|+.|.+.+ ..+...+++. .+-++++.+ .+++..+ .+. ..+....-....+..|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~eivL~D-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKLYD-NDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEEEC-SCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEEEEEc-CChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 6899999999986633 3333321110 012555444 4332221 111 112110011245888999999999
Q ss_pred EEeecc
Q 014863 183 LLLISD 188 (417)
Q Consensus 183 iLavpd 188 (417)
+++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999854
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.024 Score=48.18 Aligned_cols=76 Identities=13% Similarity=-0.018 Sum_probs=42.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|||+|||.|+.|.+++....-........-++.+.+ .++...+.+.+ ..... ....+.++++++||+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~D-id~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYD-IDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEEC-SCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEe-cCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEEE
Confidence 689999999999888754222100000012555544 44433332222 12211 113577899999999999
Q ss_pred eecchh
Q 014863 185 LISDAA 190 (417)
Q Consensus 185 avpd~a 190 (417)
..-...
T Consensus 78 ta~~~~ 83 (162)
T d1up7a1 78 QFRPGG 83 (162)
T ss_dssp CCCTTH
T ss_pred ecccCC
Confidence 876543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.0076 Score=51.82 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=67.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhH--HH-----HHHcCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF--AE-----ARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~--~~-----A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
.||+|+|+ |.||+++++.+.+. .+++++.+..+. .+.. .. ....+... ..+.+++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 68999996 99999999988765 156665554432 1110 00 00122222 34667788999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCCCCCcEEEeccCCc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~p 240 (417)
|=-+.|....+.++....+ +. +|+=+.||+-..+.. .....++++ |..+||+.
T Consensus 76 IDFs~p~~~~~~~~~a~~~---~~~~ViGTTG~~~~~~~~-i~~~a~~ip-i~~apN~S 129 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQA-IRDAAADIA-IVFAANFS 129 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHH-HHHHTTTSC-EEECSCCC
T ss_pred EEeccHHHHHHHHHHHHhc---cceeEEecCCCcHHHHHH-HHHHcCCCC-EEEEcccc
Confidence 9999999888888654433 33 455567876322211 001123444 35667765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.018 Score=48.49 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=61.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC---HHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~Eav~~ADiVi 183 (417)
-.| .+|.|+|.|.+|...++-++.. |.++++..+. .+..+.+++.|.... + ..+ .....+..|++|
T Consensus 29 ~~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~-~~~~~~a~~lGad~~i~--~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 29 GPG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVN--SRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEE
T ss_pred CCC-CEEEEeccchHHHHHHHHhhcc------cccchhhccc-hhHHHHHhccCCcEEEE--CchhhHHHHhcCCCceee
Confidence 356 8999999999999999999988 9887776655 445688888886421 1 111 222345689999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-++..... ++.....++++-.++..
T Consensus 99 d~~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 99 NTVAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ECCSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eeeecchh---HHHHHHHHhcCCEEEEe
Confidence 99975432 33334556666555544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.81 E-value=0.086 Score=44.72 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=54.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC--HHhhh-----c
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----S 177 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~--~~Eav-----~ 177 (417)
+.-+| .+|.|+|+|-+|...++.++.. |...++..+.+++..+.|++.|.... |....+ .++.. .
T Consensus 24 ~~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 24 KVTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 34567 8999999999999999999998 87545556666677899999997531 100111 22222 3
Q ss_pred cCCeEEEeecch
Q 014863 178 GSDLVLLLISDA 189 (417)
Q Consensus 178 ~ADiViLavpd~ 189 (417)
..|+||-++...
T Consensus 97 G~d~vid~~g~~ 108 (174)
T d1p0fa2 97 GVDYAVECAGRI 108 (174)
T ss_dssp CBSEEEECSCCH
T ss_pred CCcEEEEcCCCc
Confidence 579999998764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.033 Score=48.36 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=54.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEe--cCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+|||||| .|..|.-+.+-|.+. + .+++.... +...+........-.....-...+.++..+++|+|++++|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccc
Confidence 78999999 799999999888664 1 23443332 2222323221110000000012456667778999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
.....+... .. .+..|+|.++
T Consensus 76 ~~~s~~~~~----~~-~~~~VIDlSa 96 (176)
T d1vkna1 76 AGASYDLVR----EL-KGVKIIDLGA 96 (176)
T ss_dssp TTHHHHHHT----TC-CSCEEEESSS
T ss_pred cHHHHHHHH----hh-ccceEEecCc
Confidence 887665543 33 4666776665
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.67 E-value=0.1 Score=44.32 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=52.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cC-CHHhhh-----ccC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LG-DIYETI-----SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~-~~~Eav-----~~A 179 (417)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++.++.|++.|.... +.. .. ..++.. ...
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccc
Confidence 356 8999999999999999999988 86434555666677999999997531 100 01 111111 468
Q ss_pred CeEEEeecchh
Q 014863 180 DLVLLLISDAA 190 (417)
Q Consensus 180 DiViLavpd~a 190 (417)
|+||.++....
T Consensus 101 d~vi~~~g~~~ 111 (176)
T d1d1ta2 101 GYTFEVIGHLE 111 (176)
T ss_dssp CEEEECSCCHH
T ss_pred eEEEEeCCchH
Confidence 99999987644
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.025 Score=46.88 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~ 147 (417)
..|+| ++|.|||.|.+|..-++.|.+. |.+|.|..
T Consensus 9 ~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva 43 (150)
T d1kyqa1 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS 43 (150)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred eeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 56899 9999999999999999999999 98877764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.60 E-value=0.036 Score=46.37 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=59.2
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~A 179 (417)
.| .+|.|+|. |.+|...++-++.. |. +|++ .+.+.+..+.+++.|.... +....+..+.+ ...
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~-~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIG-VDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEE-EESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccc-cccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 46 89999995 99999999988888 86 5544 4455666888888886321 11122332222 237
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+|+-++.... .++.....++++-.++..
T Consensus 99 d~vid~~g~~~---~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 99 DAVIDLNNSEK---TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEEESCCCHH---HHTTGGGGEEEEEEEEEC
T ss_pred hhhhcccccch---HHHhhhhhcccCCEEEEe
Confidence 88888877533 344455667777666544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.59 E-value=0.099 Score=43.82 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=53.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CC-Cc-CCHHhhh-----cc
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TL-GDIYETI-----SG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~-~~-~~~~Eav-----~~ 178 (417)
--+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+.+.|.... +. .. ....+.. ..
T Consensus 26 vk~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 26 VTQG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCC
Confidence 3467 8999999999999999999988 86444555555666889999987531 00 00 1122221 25
Q ss_pred CCeEEEeecchhHH
Q 014863 179 SDLVLLLISDAAQA 192 (417)
Q Consensus 179 ADiViLavpd~a~~ 192 (417)
.|+||-++......
T Consensus 99 ~D~vid~~G~~~~~ 112 (176)
T d2jhfa2 99 VDFSFEVIGRLDTM 112 (176)
T ss_dssp BSEEEECSCCHHHH
T ss_pred CCEEEecCCchhHH
Confidence 89999999876443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.52 E-value=0.13 Score=44.28 Aligned_cols=73 Identities=22% Similarity=0.072 Sum_probs=40.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchh--HHHHHH--cCc----eecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARA--AGF----TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s--~~~A~~--~G~----~~~d~~~~~~~Eav~~AD 180 (417)
-||.|+|. |++|.+++..|.... =.|... .+.+.+...... ...+.+ +.. .. -....+..++++++|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~-v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~-~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGE-VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLRE-VSIGIDPYEVFEDVD 102 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEE-EEEESCHHHHTTTCS
T ss_pred cEEEEECCCcHHHHHHHHHHHcCc-ccCCCceEEEEEecCccccchhcchhhhhcccccccccC-ccccccchhhccCCc
Confidence 58999995 999999999997640 000011 233323222111 111211 110 00 001457789999999
Q ss_pred eEEEee
Q 014863 181 LVLLLI 186 (417)
Q Consensus 181 iViLav 186 (417)
+||+.-
T Consensus 103 vVvi~a 108 (175)
T d7mdha1 103 WALLIG 108 (175)
T ss_dssp EEEECC
T ss_pred eEEEee
Confidence 999987
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.51 E-value=0.12 Score=43.02 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=53.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-c-CCHHhhh-----cc
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-L-GDIYETI-----SG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~-~~~~Eav-----~~ 178 (417)
.-+| .+|.|+|.|-+|...++.++.. |...++..+..+...+.+++.|.... +.. . ...++.. ..
T Consensus 26 ~k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 26 VEPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCC
Confidence 3456 8999999999999999999887 76444555655667899999997431 100 0 0112222 25
Q ss_pred CCeEEEeecchhH
Q 014863 179 SDLVLLLISDAAQ 191 (417)
Q Consensus 179 ADiViLavpd~a~ 191 (417)
.|+|+-++-....
T Consensus 99 ~d~vid~~G~~~~ 111 (175)
T d1cdoa2 99 VDFSLECVGNVGV 111 (175)
T ss_dssp BSEEEECSCCHHH
T ss_pred cceeeeecCCHHH
Confidence 8999999986544
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.19 E-value=0.054 Score=48.38 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=55.5
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+..+..+...+.|-.. ..-.+|+
T Consensus 2 ~l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dl---- 60 (241)
T d2a4ka1 2 RLSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERLLAEAVAALEAEA----------IAVVADV---- 60 (241)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCSSE----------EEEECCT----
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCce----------EEEEecC----
Confidence 3789 9999999765 999999999999 9999888876544333333332110 0012332
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
..++.+.++++++...+.+=.+|+..+|.
T Consensus 61 s~~~~i~~~~~~i~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 61 SDPKAVEAVFAEALEEFGRLHGVAHFAGV 89 (241)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCccEecccccc
Confidence 33455566777777666444466665554
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.77 E-value=0.009 Score=49.01 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=52.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~a 190 (417)
.+|.|+|+|++|.+++..++.+ .+++++.+.+.+.+....-. .|+.+. ...+.++.+ +..++.++++|...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G~~I-~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVGRPV-RGGVIE--HVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTTCEE-TTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcCCEE-CCEEEe--cHHHHHHHHhhcccEEEEeCCHHH
Confidence 3799999999999999877543 16787777776553322111 355431 012333333 45789999999988
Q ss_pred HHHHHHHHHh
Q 014863 191 QADNYEKIFS 200 (417)
Q Consensus 191 ~~~Vl~eI~p 200 (417)
..++++.+..
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887554
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.56 E-value=0.033 Score=47.35 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|||+|||.|.-|.+-|..|++. |++|.|..+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 9999999999999999999999 9999887654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.017 Score=50.26 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-----HcCceec-CCCcCCHHhhhcc
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----AAGFTEE-NGTLGDIYETISG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-----~~G~~~~-d~~~~~~~Eav~~ 178 (417)
..++| |++.|||-++ .|..+|.-|.+. |..|.+............. ..+.... ..+-....+.+.+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence 58999 9999999775 599999999988 8877766543221100000 0000000 0000125667789
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
||+||.+++..... + =..++|+|+++++++.
T Consensus 98 aDIvIsavG~p~~~--i--~~d~ik~GavvIDvGi 128 (171)
T d1edza1 98 SDVVITGVPSENYK--F--PTEYIKEGAVCINFAC 128 (171)
T ss_dssp CSEEEECCCCTTCC--B--CTTTSCTTEEEEECSS
T ss_pred CCEEEEccCCCccc--c--ChhhcccCceEeeccc
Confidence 99999999864320 0 0245789999998864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.53 E-value=0.036 Score=46.97 Aligned_cols=87 Identities=23% Similarity=0.200 Sum_probs=60.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHh------hhccCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE------TISGSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E------av~~AD 180 (417)
-+| ++|.|.|. |.+|....+-++.. |.+|++..++ ++..+.+++.|... +.+..+ .-..+|
T Consensus 26 ~~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEE----AATYAEVPERAKAWGGLD 93 (171)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEE
T ss_pred CCC-CEEEEEeccccchhhhhhhhccc------cccccccccc-ccccccccccccce----eeehhhhhhhhhcccccc
Confidence 367 99999995 99999999888888 9988776665 44567888888753 222222 225689
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++.+. ++.....++++-.++..
T Consensus 94 ~v~d~~G~~-----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVLEVRGKE-----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEECSCTT-----HHHHHTTEEEEEEEEEC
T ss_pred ccccccchh-----HHHHHHHHhcCCcEEEE
Confidence 999887632 44555677777665544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.50 E-value=0.085 Score=47.64 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=56.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
+.|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+.+.|-.. ..-.+|+
T Consensus 1 ndL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dv--- 60 (254)
T d1hdca_ 1 NDLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDEEGAATARELGDAA----------RYQHLDV--- 60 (254)
T ss_dssp CCCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTGGGE----------EEEECCT---
T ss_pred CCCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce----------EEEEccc---
Confidence 35899 999999976 5999999999999 9999888876444333333322110 0112332
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 61 -~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 61 -TIEEDWQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHcCCccEEEecCcc
Confidence 34455567777776554332367777775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.11 Score=43.55 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
+| .+|.|+|. |.+|....+-++.. |.+|++..++ ++..+.+++.|.... |..-.+..+.+ ...|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 57 89999995 99999999988888 9988777665 445788888887421 11112333333 2378
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++... .++.....++++-.++..
T Consensus 100 ~v~d~~g~~----~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 100 IIIEMLANV----NLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEESCHHH----HHHHHHHHEEEEEEEEEC
T ss_pred EEeecccHH----HHHHHHhccCCCCEEEEE
Confidence 888887643 455555667776665543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.33 E-value=0.021 Score=47.74 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=54.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCceEEEEecC--CchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
+||||||. |..|.-+.+-|.+. ++ ..++.....+ ..+.. ..+.... .......+...++|++++++|
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP----~~~l~~~~s~~~~Gk~i----~~~~~~~-~~~~~~~~~~~~~d~vf~a~p 73 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAESAGQRM----GFAESSL-RVGDVDSFDFSSVGLAFFAAA 73 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTTTTCEE----EETTEEE-ECEEGGGCCGGGCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC----ceEEEEEeecccCCcce----eeccccc-hhccchhhhhccceEEEecCC
Confidence 68999995 99999999988643 10 1244332221 11111 1111100 001112345788999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.....++.+++. ..|..|++.++.
T Consensus 74 ~~~s~~~~~~~~---~~g~~VID~Ss~ 97 (144)
T d2hjsa1 74 AEVSRAHAERAR---AAGCSVIDLSGA 97 (144)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTCT
T ss_pred cchhhhhccccc---cCCceEEeechh
Confidence 888877776654 467788887764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.32 E-value=0.039 Score=47.18 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
+||.|||.|..|.+.|..|.+. |++|.|..+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999888764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.06 E-value=0.27 Score=43.57 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=54.0
Q ss_pred ccCCCCEEEEEcc-c--chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.|+| |++-|.|. | -||.++|+.|.+. |.+|++..|+. +..+.+.+ ..+....+.++.
T Consensus 2 ~L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~------------l~~~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRP------------IAQELNSPYVYE 61 (274)
T ss_dssp TTTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHH------------HHHHTTCCCEEE
T ss_pred cCCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHH------------HHhhCCceeEee
Confidence 4789 99999996 4 3999999999999 99998888763 22222222 111122333333
Q ss_pred Eeec-chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 184 LLIS-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lavp-d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.-+. +....++++++...+.+=.+++..+|.
T Consensus 62 ~d~~~~~~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp CCTTCHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred ecccchhhHHHHHHHHHHHcCCCCeEEeeccc
Confidence 3333 334456777766665443345556664
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.01 E-value=0.037 Score=46.23 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG 150 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~ 150 (417)
+||+|||.|..|...|..|++. |+ +|.+..+.+
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~~ 38 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQE 38 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEecC
Confidence 8999999999999999999999 98 587777653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.92 E-value=0.085 Score=44.10 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceE--EEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEE
Q 014863 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVV--KVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 110 g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~V--ivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiVi 183 (417)
+|++|.|.| .|.+|.++++.|.+. |+++ +...|. .+.... ...++........+ ..++++++|.|+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~------g~~v~v~~~~R~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~d~vi 73 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG------SDKFVAKGLVRS-AQGKEK-IGGEADVFIGDITDADSINPAFQGIDALV 73 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT------TTTCEEEEEESC-HHHHHH-TTCCTTEEECCTTSHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC------CCcEEEEEEcCC-HHHHHh-ccCCcEEEEeeeccccccccccccceeeE
Confidence 379999999 799999999999998 8643 323343 222221 11222111111222 345678888888
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
.+.
T Consensus 74 ~~a 76 (252)
T d2q46a1 74 ILT 76 (252)
T ss_dssp ECC
T ss_pred EEE
Confidence 765
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=92.91 E-value=0.12 Score=43.33 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=48.4
Q ss_pred cCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhH----HHHHHcCceecCCCcCCHHhhhc
Q 014863 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 108 l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~Eav~ 177 (417)
|+| +||++||=| ++-.|++..+... |+++.+...+. .... +.+.+.|.... ...+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~--~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCceE--EEecHHHhhh
Confidence 678 999999954 6999999998888 99876654331 1111 22333343211 1468999999
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
++|+|+...-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997553
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=92.91 E-value=0.13 Score=43.82 Aligned_cols=95 Identities=11% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEE-EecC----CchhHHHHHH--cCceec-CCCcCCHHhhhccCCe
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK----GSRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~----~~~s~~~A~~--~G~~~~-d~~~~~~~Eav~~ADi 181 (417)
|+||+||| .|..|.-+.+-|.+. ..+++.. ..+. ..+....... .+.... .....+..+...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-----P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-----PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-----CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 78999999 899999999988764 1234432 2221 1122222111 111100 0001234445678999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
||+|+|+....+..+.+.. .|..+++.++
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred eeccccchhHHHHhhhhhh---cCceeecccc
Confidence 9999999888887766543 5667776665
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.87 E-value=0.11 Score=47.67 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=49.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH-H-HHHcCceecCCCcCC----HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-E-ARAAGFTEENGTLGD----IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~-~-A~~~G~~~~d~~~~~----~~Eav~~ADiViL 184 (417)
|+|.|+| .|.+|.+++..|.+. |++|++..|+.++... . ....|+....+...+ .+.++..+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 7899999 699999999999999 9998888775433222 2 222354321111222 3457889999998
Q ss_pred eecchh
Q 014863 185 LISDAA 190 (417)
Q Consensus 185 avpd~a 190 (417)
..++..
T Consensus 78 ~~~~~~ 83 (350)
T d1xgka_ 78 NTTSQA 83 (350)
T ss_dssp CCCSTT
T ss_pred eccccc
Confidence 887554
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=92.87 E-value=0.047 Score=50.22 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
..||||+|||.|.-|.+.|..|++. +.+.+|++..+.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence 3579999999999999999999876 1135888877763
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.73 E-value=0.15 Score=45.42 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=54.3
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+.+.. .+ .+|+ .
T Consensus 3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~~~l~~~~~~~~~~-----------~~-~~Dv----~ 59 (242)
T d1ulsa_ 3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEEGPLREAAEAVGAH-----------PV-VMDV----A 59 (242)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTTCE-----------EE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCe-----------EE-EEec----C
Confidence 688 999999965 5999999999999 999988887644433333332222 11 2443 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.++...++++++...+.+=.+|+..+|+
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 3445566777776655332367777775
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.08 Score=45.77 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=34.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
..-+. |+|+|||.|.-|.+-|..|.+. |++|.+..+.+
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAHS 76 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEeccC
Confidence 56667 9999999999999999999999 99999988753
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.61 E-value=0.085 Score=47.60 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=54.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++-|.| .+-||.++|+.|.+. |.+|++..|+.++ .+++.+. ... .......+ .+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~~~-l~~~~~~-~~~----~~~~~~~~-~~D~---- 64 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNEKE-LDECLEI-WRE----KGLNVEGS-VCDL---- 64 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHH----TTCCEEEE-ECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCceEE-Eeec----
Confidence 4789 9999999 557999999999999 9999888876433 3332221 110 00000111 2333
Q ss_pred ecchhHHHHHHHHHhcC-CCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCM-KPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~L-k~GaiL~~a~G~ 214 (417)
..++...++++++.... .+-.+|+..+|.
T Consensus 65 s~~~~~~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 65 LSRTERDKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp TCHHHHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeccccc
Confidence 34445556777777665 244466666665
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.16 Score=46.79 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred ccccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|.-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+..-. . ......+++.
T Consensus 7 ~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el~~~--------~-~~~~~~~~~~ 70 (297)
T d1yxma1 7 PGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADELQAN--------L-PPTKQARVIP 70 (297)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHT--------S-CTTCCCCEEE
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhh--------h-ccccCceEEE
Confidence 457999 999999965 5999999999999 999988887644433333221100 0 0012344544
Q ss_pred Eee---cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 184 LLI---SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lav---pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+ .++.+.++++++...+.+=.+|+..+|.
T Consensus 71 ~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 443 3445556777776655444467766664
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.41 E-value=0.19 Score=41.69 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=69.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||-|-|. |.+|.-+++.+++. |-+|+.|..++..-. .-.|+.+ +.+.+||++ ++|.=++-+||
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 68999997 99999999999999 999988887632111 1146654 678888876 79999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchhhh
Q 014863 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (417)
Q Consensus 189 ~a~~~-Vl~eI~p~Lk~GaiL~~a~G~~i~~ 218 (417)
....+ +++.+...++ .++++.-|+..+.
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~D 111 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQD 111 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHHH
Confidence 88864 6666766663 3677888886553
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.15 E-value=0.18 Score=43.44 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEcc--cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGW--GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~--G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~Eav 176 (417)
-|+| .||++||= -++..|++..+... |+++.+....+ ....+. +...|.... ...+.++++
T Consensus 2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~eai 72 (185)
T d1dxha2 2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV 72 (185)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEE--EEeChhhcc
Confidence 4788 99999994 48999999999888 99887765432 222232 233443321 156899999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
+++|+|..-+
T Consensus 73 ~~aDvVyt~~ 82 (185)
T d1dxha2 73 KGVDFVHTDV 82 (185)
T ss_dssp TTCSEEEECC
T ss_pred ccccEEEeeh
Confidence 9999988755
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.07 E-value=0.16 Score=45.44 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=55.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.+-.. . .-.+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~---------~-~~~~Dv---- 61 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADAA---------R-YVHLDV---- 61 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGGE---------E-EEECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCcc---------e-EEEeec----
Confidence 4788 988898965 5999999999999 9999888876544333333322110 0 112332
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++.....+=.+|+..+|+
T Consensus 62 ~~~~~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence 23445567787776655443467777775
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.07 E-value=0.14 Score=46.09 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=55.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.+-. ..... -.+|+
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~-------~~~~~-~~~Dv---- 63 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIADDHGQKVCNNIGSP-------DVISF-VHCDV---- 63 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCCT-------TTEEE-EECCT----
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhcCC-------CceEE-EEccC----
Confidence 4889 999999965 5999999999999 999988887644333333222110 00011 12342
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++.....+=.+|+..+|+
T Consensus 64 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCcceecccccc
Confidence 34555667777776655333467777775
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.069 Score=42.80 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.||||||.|..|.-+++..++- |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999988 9998876644
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.01 E-value=0.086 Score=44.09 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=45.4
Q ss_pred cCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCceEEEEecCC--chhHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
|+| .||+|||=++ ...|++..+... |.++++...+. ..........|.... ...+++++++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeEE--EEeCHHHHhhcCCeE
Confidence 578 9999999654 799999998887 88654433321 122233333343211 156899999999998
Q ss_pred EEe
Q 014863 183 LLL 185 (417)
Q Consensus 183 iLa 185 (417)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.32 Score=39.65 Aligned_cols=92 Identities=16% Similarity=0.252 Sum_probs=68.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||.|-|. |.+|.-+++.+++. |-+|+.|..++..-.+ -.|+.. +.+.+|+++ ++|.=++-+||
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~~---~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGTT---HLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTEE---ETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCcc---cCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999997 99999999999999 9999888876431111 246654 678888775 68999999998
Q ss_pred hhHH-HHHHHHHhcCCCCcEEEEeccchhhh
Q 014863 189 AAQA-DNYEKIFSCMKPNSILGLSHGFLLGH 218 (417)
Q Consensus 189 ~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i~~ 218 (417)
.... .+++.+...++ .++++.-|+..+.
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~D 102 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTLD 102 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHHH
Confidence 8776 46666766563 3677888876553
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.90 E-value=0.074 Score=46.03 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
+||+|||.|.-|.+.|..|++. |++|+|..+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 8999999999999999999999 9999988764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.87 E-value=0.21 Score=41.58 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
+| .+|.|+| .|.+|...++-++.. |.++++..++ .+..+.+++.|.... +....+..+.+ ...|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~-~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeecc-cccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 56 8999988 599999999988888 9988877765 345788888886421 11122343433 4589
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++..+. +++....++++..++..
T Consensus 97 ~v~d~~g~~~----~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAGEA----IQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCTHH----HHHHHHTEEEEEEEEEC
T ss_pred EEEecccchH----HHHHHHHhcCCCEEEEE
Confidence 9999998543 33444556666665544
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.85 E-value=0.9 Score=37.25 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=53.2
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHh-hhccCCeEEEeecchh
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISDAA 190 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E-av~~ADiViLavpd~a 190 (417)
||+|+| .|.||..++..+... .++++..+.+.... ..+ .-.++|+||=-+.|+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~-------------------~~~~~~~~~DvvIDFS~p~~ 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDP-------------------LSLLTDGNTEVVIDFTHPDV 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCC-------------------THHHHTTTCSEEEECCCTTT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCc-------------------hhhhccccCCEEEEcccHHH
Confidence 799999 699999999987665 16777666653211 111 1246899999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchh
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHGFLL 216 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i 216 (417)
..+.++....+ |. +|+=+.|++-
T Consensus 57 ~~~~~~~~~~~---~~~~ViGTTG~~~ 80 (135)
T d1yl7a1 57 VMGNLEFLIDN---GIHAVVGTTGFTA 80 (135)
T ss_dssp HHHHHHHHHHT---TCEEEECCCCCCH
T ss_pred HHHHHHHHHhc---CCCEEEeccccch
Confidence 98888765543 33 4555568863
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.85 E-value=0.074 Score=46.40 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|||+|||.|.-|.+-|..|.+. |++|.|..+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999887654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.83 E-value=0.099 Score=46.27 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEcc-cc--hHHHHHHHHHhhhhhhcCCceEEEEecCCchh
Q 014863 107 AFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~--mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s 153 (417)
-|+| |++-|.|. |+ ||.++|+.|.+. |.+|++..++..+.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 4789 99999996 65 999999999999 99998887765543
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.78 E-value=0.21 Score=42.04 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=47.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHHHH----cCceecCCCcCCHHhhhcc
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARA----AGFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ 178 (417)
|+| +||++||=| ++..|++..+... |+++.+.... .....+.+.+ .+... ....+.+|++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAVKD 72 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHTTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceE--EEecCHHHHhhh
Confidence 689 999999966 6778888888887 9887766432 2222333332 22221 115689999999
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
+|+|..-.
T Consensus 73 adviy~~~ 80 (163)
T d1pvva2 73 ADVIYTDV 80 (163)
T ss_dssp CSEEEECC
T ss_pred ccEEeecc
Confidence 99988643
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=91.52 E-value=0.065 Score=45.60 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|+|+|||.|.-|.+-|..|.+. |++|.+..+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 5799999999999999999999 9999887654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.15 Score=44.92 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=37.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (417)
+.||| |.+-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHH
Confidence 36899 999999966 5999999999999 99998888876654444444
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.1 Score=39.57 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
||+|||||.|..|.=+++.-+.- |+++++.+.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp 32 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGL 32 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcC
Confidence 68999999999999999988887 998877654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.06 E-value=0.14 Score=45.89 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+..+..+.+.+. . +.. ..+++.+.
T Consensus 6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~--~----------~~~-g~~~~~~~ 65 (260)
T d1h5qa_ 6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKV--G----------KEF-GVKTKAYQ 65 (260)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHH--H----------HHH-TCCEEEEE
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------HHh-CCceEEEE
Confidence 5789 9999999664 999999999999 999988888755433333221 0 000 11222222
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++.....+=.+|+..+|+
T Consensus 66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEecccccc
Confidence 34445566777777665333356666665
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=91.05 E-value=0.29 Score=44.13 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
..|+| ++|+|=|+|+.|...|+-|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 36889 9999999999999999999998 988764443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.96 E-value=0.11 Score=48.05 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=30.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
|||+|||.|.-|.+.|..|.+. |++|.|....+
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECCC
Confidence 9999999999999999999998 99998887653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.86 E-value=0.078 Score=47.02 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.7
Q ss_pred CC-EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 111 IN-QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 111 ~k-kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|| +|.|||.|.-|.++|..|++. |++|.|..+.
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~ 34 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQ 34 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH------TCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 45 699999999999999999999 9999888765
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.81 E-value=0.19 Score=45.10 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=54.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+.+.|-.. ..-.+|+
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~~~~----------~~~~~Dv---- 61 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAELGERS----------MFVRHDV---- 61 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE----------EEECCCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCCe----------EEEEeec----
Confidence 4889 998898955 5999999999999 9998887765433323333322110 0112232
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 62 SSEADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 23445566777776655444467777775
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.78 E-value=0.43 Score=38.93 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=68.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||.|-|. |.+|.-+++.+++. |-+++.|..++..-.+ -.|+.+ +.+.+|+++ ++|.=++-+||
T Consensus 8 trVivQGiTG~~G~~ht~~m~~y------GT~iVaGVtPgkgG~~---~~giPV----f~tV~eAv~~~~~d~SvIfVPp 74 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGME---VLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTCE---ETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEeeeecCCCCcE---EECCch----HhhHHHHHHhcCCeEEEEeeCH
Confidence 58999996 99999999999999 9999888876431110 135554 677888764 78999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchhhh
Q 014863 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (417)
Q Consensus 189 ~a~~~-Vl~eI~p~Lk~GaiL~~a~G~~i~~ 218 (417)
....+ +++.+...++ .++++.-|+..+.
T Consensus 75 ~~a~dAi~EAi~agI~--liv~ITEgVPv~D 103 (121)
T d1oi7a1 75 PAAADAALEAAHAGIP--LIVLITEGIPTLD 103 (121)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCSCCCHHH
T ss_pred HHHHHHHHHHHhCCCc--EEEEecCCCCHHH
Confidence 88764 6666666553 3677888876543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.70 E-value=0.12 Score=43.24 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=53.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
-||||||. |-.|.-+.+-|.+. .+ ++..... .++..+........ .......++...+.|++++++|
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~s--~~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~ 72 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLAS--ARSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG 72 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEEC--GGGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEecc--cccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence 58999996 99999998877554 32 2222211 11111100011110 0001233456778999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+....+...+.. ..|..|+|.++.
T Consensus 73 ~~~s~~~~~~~~---~~~~~VIDlSsd 96 (154)
T d2gz1a1 73 SSTSAKYAPYAV---KAGVVVVDNTSY 96 (154)
T ss_dssp HHHHHHHHHHHH---HTTCEEEECSST
T ss_pred ccchhhHHhhhc---cccceehhcChh
Confidence 888777666543 467788877763
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.55 E-value=0.18 Score=41.77 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=50.3
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccCC
Q 014863 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
|+| .||+|||= ++...|++..+... |.++.+..... ......+.+.+.... ...+++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccce--eecCHHHhhccCc
Confidence 678 99999996 57899999999877 98877765432 222344445443321 1468899999999
Q ss_pred eEEEeec
Q 014863 181 LVLLLIS 187 (417)
Q Consensus 181 iViLavp 187 (417)
+|....-
T Consensus 73 vvy~~~~ 79 (157)
T d1ml4a2 73 VLYVTRI 79 (157)
T ss_dssp EEEECCC
T ss_pred EEEeecc
Confidence 9887654
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.3 Score=41.69 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chh----HHHHHHcCceecCCCcCCHHhh
Q 014863 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRS----FAEARAAGFTEENGTLGDIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s----~~~A~~~G~~~~d~~~~~~~Ea 175 (417)
+.|+| .||++||=| ++..|++..+... |+++.+...++ ... .+.+...|... ....+.+++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence 45788 899999955 7999999999888 99877664431 121 23334445432 124689999
Q ss_pred hccCCeEEEeec
Q 014863 176 ISGSDLVLLLIS 187 (417)
Q Consensus 176 v~~ADiViLavp 187 (417)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999886543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.42 E-value=0.39 Score=41.93 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=48.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-h------HHHHHHcCceecCCCcCC---HHhhhccCC
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S------FAEARAAGFTEENGTLGD---IYETISGSD 180 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s------~~~A~~~G~~~~d~~~~~---~~Eav~~AD 180 (417)
+||.|+| .|.+|.+++..|.+. |++|++..|.... . .......++........+ ..+++.++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6899999 599999999999999 9998877775321 1 122233444321111223 345788999
Q ss_pred eEEEeecch
Q 014863 181 LVLLLISDA 189 (417)
Q Consensus 181 iViLavpd~ 189 (417)
.++.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 999887654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.38 E-value=0.78 Score=40.87 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=54.7
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe-
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa- 185 (417)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++ .+...+. ..+.-.+..++.+.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~-l~~~~~~-----------~~~~~~~~~~~~~~~ 62 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSSEG-LEASKAA-----------VLETAPDAEVLTTVA 62 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-----------HHHHCTTCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-----------HHhhCCCCeEEEEec
Confidence 788 988898966 5999999999999 9999888876332 2222210 11111223333332
Q ss_pred --ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 63 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 23455567777776655333467777775
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.34 E-value=0.24 Score=44.31 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=55.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|+| |++-|.|. +-||.++|+.|.+. |.+|++.+|+.++..+.+.+.|-.. . .-.+|+ +
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~~~~---------~-~~~~Dv----t 61 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEAARATAAEIGPAA---------C-AIALDV----T 61 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHHHHHHHHHHCTTE---------E-EEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce---------E-EEEeeC----C
Confidence 788 89999996 57999999999999 9999888876444334444433211 0 112343 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeeccc
Confidence 4555567787776655333367777775
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.32 E-value=0.21 Score=44.80 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=53.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++ .+.+.+ .|... . .-.+|+
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~~~~~~g~~~---------~-~~~~Dv 66 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRNQKE-LNDCLTQWRSKGFKV---------E-ASVCDL 66 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHHHTTCEE---------E-EEECCT
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHHHHhcCCCc---------e-EEEeeC
Confidence 4788 999999976 5999999999999 9999888775332 322221 11110 0 112332
Q ss_pred EEEeecchhHHHHHHHHHhcCC-CCcEEEEeccc
Q 014863 182 VLLLISDAAQADNYEKIFSCMK-PNSILGLSHGF 214 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk-~GaiL~~a~G~ 214 (417)
+.++...++++++...+. +=.+|+..+|+
T Consensus 67 ----~~~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 67 ----SSRSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp ----TCHHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred ----CCHHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 334455667777766654 33467777775
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.30 E-value=0.17 Score=45.31 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=54.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+.+. .+.. ..+++.+.
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l------------~~~~-g~~~~~~~ 61 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLEEASEAAQKL------------TEKY-GVETMAFR 61 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHHH-CCCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HHHh-CCcEEEEE
Confidence 4789 999999965 5999999999999 999988887644332222211 0100 12222222
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23445556777776655332367777775
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.34 Score=43.03 Aligned_cols=87 Identities=21% Similarity=0.125 Sum_probs=53.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++..+.+.+.+-.. ..+ .+|+
T Consensus 1 dl~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~~l~~~~~~~~~~~---------~~~-~~Dv---- 59 (243)
T d1q7ba_ 1 NFEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSENGAQAISDYLGANG---------KGL-MLNV---- 59 (243)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGE---------EEE-ECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhCCCC---------cEE-EEEe----
Confidence 4789 888888955 6999999999999 9999887776443333333322110 001 1332
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|.
T Consensus 60 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 60 TDPASIESVLEKIRAEFGEVDILVNNAGI 88 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred cCHHHhhhhhhhhhcccCCcceehhhhhh
Confidence 33455567788776655332356666664
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.64 Score=41.41 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=54.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
+.|+| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|+..+ .+.+.+. ..+.-...+++.+
T Consensus 6 ~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~~~~-l~~~~~~-----------l~~~~~~~~~~~~ 66 (257)
T d1xg5a_ 6 ERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCARTVGN-IEELAAE-----------CKSAGYPGTLIPY 66 (257)
T ss_dssp GGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-----------HHHTTCSSEEEEE
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-----------HHhcCCCceEEEE
Confidence 45899 999999965 7999999999999 9998887765332 2222110 1111011233332
Q ss_pred e---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 L---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 a---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
. ..++...++++++...+.+=.+|+..+|+
T Consensus 67 ~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 67 RCDLSNEEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 1 34455567777766654332367777765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.62 Score=41.41 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=56.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
+.|.| |.|-|-|.+. ||.++|+.|.+. |.+|++..|+.++..+.+.+. .+. ..++..+
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~~------------~~~--~~~~~~~ 61 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAKC------------KGL--GAKVHTF 61 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHT--TCCEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------Hhc--CCcEEEE
Confidence 56899 9999999775 999999999999 999998887644322222221 111 1222222
Q ss_pred e--ec-chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 185 L--IS-DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 185 a--vp-d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
. +. ++.+.++++++...+.+=.+|+..+|+.
T Consensus 62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCceeEeecccc
Confidence 2 23 3344567777776665445677777763
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.10 E-value=0.17 Score=40.76 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCC--ceEEEEecC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRK 149 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G--~~Vivg~r~ 149 (417)
.| |||.|||.|..|..+|..|++. + .+|.+..+.
T Consensus 1 ~g-krivIvGgG~~G~e~A~~l~~~------~~~~~Vtlie~~ 36 (186)
T d1fcda1 1 AG-RKVVVVGGGTGGATAAKYIKLA------DPSIEVTLIEPN 36 (186)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHHH------CTTSEEEEECSC
T ss_pred CC-CcEEEECccHHHHHHHHHHHHc------CCCCcEEEEECC
Confidence 37 9999999999999999999998 5 466665543
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.95 E-value=0.35 Score=43.79 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=57.6
Q ss_pred cccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc
Q 014863 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 98 ~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.+.|.......+| +||++||+ + .....+++. +.++.|..++.. .|..+ ....+++++
T Consensus 110 ~d~~~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p~--------~gd~p----~~~~~~lLp 166 (251)
T d2h1qa1 110 NDPFIMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILP 166 (251)
T ss_dssp CCHHHHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGG
T ss_pred ccchhhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCCC--------CCCCC----chHHHHhhh
Confidence 3446555567788 99999986 4 455667887 888888877521 23332 235778999
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+||+||+. --...-..++.|..+-++...++
T Consensus 167 ~aD~viiT-GsTlvN~Tl~~LL~~~~~a~~vv 197 (251)
T d2h1qa1 167 ECDYVYIT-CASVVDKTLPRLLELSRNARRIT 197 (251)
T ss_dssp GCSEEEEE-THHHHHTCHHHHHHHTTTSSEEE
T ss_pred cCCEEEEE-echhhcCCHHHHHHhCCcCCEEE
Confidence 99998864 33333345566666666665544
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.18 Score=45.21 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=34.6
Q ss_pred ccccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 105 PDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
++-|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|+.+
T Consensus 9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~~ 49 (269)
T d1xu9a_ 9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSKE 49 (269)
T ss_dssp GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 456999 9999999775 999999999999 999988887644
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.88 E-value=0.74 Score=40.85 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=53.3
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe-
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa- 185 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|++.+..+...+. + .+ -...+++.+.
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~~-~----------~~-~~g~~~~~~~~ 62 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRAG-L----------AA-QHGVKVLYDGA 62 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHHH-H----------HH-HHTSCEEEECC
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHH-H----------HH-hcCCcEEEEEC
Confidence 678 887787865 5999999999999 999988887654433332210 0 00 0112233222
Q ss_pred --ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 23444556777776655333367777775
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=89.84 E-value=0.52 Score=41.91 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=55.6
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|.| .+-||.++|+.|.+. |.+|++.+|+.+ ..+.+++.+.. .+ .+|+
T Consensus 2 ~l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~-~~~~~~~~~~~-----------~~-~~Dv---- 57 (248)
T d2d1ya1 2 LFAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE-GKEVAEAIGGA-----------FF-QVDL---- 57 (248)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT-HHHHHHHHTCE-----------EE-ECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCe-----------EE-EEeC----
Confidence 4789 9999999 557999999999999 999988877643 34444443322 11 2443
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 58 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 86 (248)
T d2d1ya1 58 EDERERVRFVEEAAYALGRVDVLVNNAAI 86 (248)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEeCcC
Confidence 34445567777776655333367777775
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.77 E-value=0.81 Score=40.23 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|.+
T Consensus 5 ~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~~ 44 (256)
T d1ulua_ 5 DLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQAE 44 (256)
T ss_dssp CCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESSG
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCcH
Confidence 5899 9999999753 999999999999 99988877653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.56 E-value=0.25 Score=44.25 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=53.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.+ ..+.+.+. +. + ...++..+.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~-~l~~~~~~-~~----------~--~g~~~~~~~ 60 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMNRE-ALEKAEAS-VR----------E--KGVEARSYV 60 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHH-HH----------T--TTSCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHH-HH----------h--cCCcEEEEE
Confidence 4789 999999975 5999999999999 999988777533 23332221 11 1 012333322
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeehhhhcc
Confidence 23445567777766655333356666665
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.25 E-value=0.54 Score=41.65 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=54.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-|+| |.+-|.|.+ -||.++|+.|.+. |.+|++.++...+.. +..++.|... . .-.+|+
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~g~~~---------~-~~~~Dv--- 61 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPAPEAEAAIRNLGRRV---------L-TVKCDV--- 61 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCHHHHHHHHHTTCCE---------E-EEECCT---
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCchHHHHHHHHHcCCcE---------E-EEEeeC---
Confidence 3789 988899965 5999999999999 999988887644322 2222222110 0 112443
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 62 -s~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 62 -SQPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34455566777776655333367777775
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.18 E-value=0.54 Score=41.93 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.9
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH
Q 014863 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (417)
Q Consensus 105 ~~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~ 154 (417)
+..|+| |++-|.| .+-+|.++|+.|.+. |.+|++.+++.++..
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~~ 56 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTESA 56 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHHH
Confidence 467999 9999999 668999999999999 999988777654433
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=89.14 E-value=0.24 Score=38.73 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
...+ ++|+|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 19 ~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 19 YEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp SCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 4457 9999999999999999999998 8888877664
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=89.12 E-value=0.18 Score=42.23 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.1
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|+| .||+|||= +++..|++..+... |.++.+..... ... .+..+.. ..+.+|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~---~~~-~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE---WQD-EENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch---hhc-cccceeE----EEechhccccCceeee
Confidence 678 99999995 57999999999887 88876654331 111 1223332 4588999999999886
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
..-
T Consensus 66 ~r~ 68 (151)
T d2at2a2 66 LRI 68 (151)
T ss_pred eEE
Confidence 543
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=88.85 E-value=0.61 Score=40.09 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=48.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchh--H------HHHHHcCceecCCCcCC---HHhhhccC
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--F------AEARAAGFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s--~------~~A~~~G~~~~d~~~~~---~~Eav~~A 179 (417)
|||.|+|. |.+|.+++..|.++ |++|++..|..... . ......++........+ ..+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 78999995 99999999999999 99988877753321 1 11122344321111222 34567889
Q ss_pred CeEEEeecchhH
Q 014863 180 DLVLLLISDAAQ 191 (417)
Q Consensus 180 DiViLavpd~a~ 191 (417)
|.|+.+......
T Consensus 78 ~~vi~~~~~~~~ 89 (307)
T d1qyca_ 78 DVVISTVGSLQI 89 (307)
T ss_dssp SEEEECCCGGGS
T ss_pred eeeeeccccccc
Confidence 998888765444
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=0.29 Score=42.94 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
-|+| |+|-|.|.+. +|.++|+.|.+. |.+|++.++++
T Consensus 2 ~L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 2 FLSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred cCCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4789 9999999765 889999999999 99998887763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.66 Score=41.29 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|-|. +-||.++|+.|.+. |.+|++.+|+.+...+.+.+.+-. ..-.+|+
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~~~-----------~~~~~Dv---- 60 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDESGGRALEQELPGA-----------VFILCDV---- 60 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTE-----------EEEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhcCCC-----------eEEEccC----
Confidence 4789 99999995 58999999999999 999988877633322222221100 0112332
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|.
T Consensus 61 s~~~~v~~~~~~~~~~~g~iDilVnnAG~ 89 (250)
T d1ydea1 61 TQEDDVKTLVSETIRRFGRLDCVVNNAGH 89 (250)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 33445556777766655333357766764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.75 E-value=0.28 Score=44.17 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=53.2
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCceecCCCcCCHHhh-hccCCe
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Ea-v~~ADi 181 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++ .+.+.+ .|.. ...+ .-.+|+
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~~~-l~~~~~~l~~~~~~--------~~~~~~~~~Dv 66 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSSER-LEETRQIILKSGVS--------EKQVNSVVADV 66 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHHTTTCC--------GGGEEEEECCT
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHHHHhcCCC--------CCceEEEEccC
Confidence 789 999999965 6999999999999 9999888876433 222221 1111 0110 112232
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|.
T Consensus 67 ----s~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 67 ----TTEDGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp ----TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ----CCHHHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 33445567777776655333467766765
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=88.65 E-value=0.16 Score=44.39 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=28.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 99999999999999999999 99998877653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.34 E-value=0.74 Score=37.99 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh------ccCC
Q 014863 109 NGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav------~~AD 180 (417)
.| ++|.|+|.|. +|....+-.+.. |.+|++..++ ++..+.+++.|.... |..-.+..+.+ ...|
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s-~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccc-hHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 47 8999996554 888888777777 9988776665 445678888885421 21123444433 2468
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|+-++..+.. ......++++-.++.
T Consensus 100 ~v~d~~g~~~~----~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 100 VVYDSVGRDTW----ERSLDCLQRRGLMVS 125 (179)
T ss_dssp EEEECSCGGGH----HHHHHTEEEEEEEEE
T ss_pred EEEeCccHHHH----HHHHHHHhcCCeeee
Confidence 88888876543 334445555544443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=0.52 Score=41.80 Aligned_cols=89 Identities=19% Similarity=0.077 Sum_probs=51.1
Q ss_pred CCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEee
Q 014863 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLav 186 (417)
+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+..-. .....+ .-.+|+ +
T Consensus 2 ~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~~~~Dv----~ 64 (254)
T d2gdza1 2 NG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLEAGVQCKAALHEQ------FEPQKTLFIQCDV----A 64 (254)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHTTT------SCGGGEEEEECCT----T
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHh------cCCCcEEEEEeec----C
Confidence 57 888888865 5999999999999 999988887644433333221100 001111 112332 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.++...++++++...+.+=.+|+-.+|.
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 65 DQQQLRDTFRKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCcCeecccccc
Confidence 3444556777766554332356666664
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.29 E-value=0.049 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
|||+|||.|.+|.+.|..|.++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6899999999999999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=88.21 E-value=0.31 Score=38.85 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=29.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~ 62 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA------GVHVSLVETQ 62 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence 8999999999999999999999 9988887664
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.24 Score=42.05 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.||+|||.|.-|.+-|..|.+. |++|.|....
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 6899999999999999999999 9999887653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.08 E-value=0.2 Score=40.81 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~ 149 (417)
.+|+|||.|.-|.+-|..|++. |+ +|.|..+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 3799999999999999999999 96 68887654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.98 E-value=0.33 Score=38.61 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=30.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 29 ~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 35 8999999999999999999999 9998887654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.95 E-value=0.31 Score=38.09 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++|.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEecc
Confidence 7899999999999999999998 99988877653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.92 E-value=0.31 Score=43.81 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=34.5
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCch
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~ 152 (417)
..|+| |++-|.| .|-+|.++|+.|.+. |.+|++.+|+..+
T Consensus 21 ~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~~ 61 (294)
T d1w6ua_ 21 NSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMDV 61 (294)
T ss_dssp TTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 58999 9999998 678999999999999 9999888876443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.89 E-value=0.36 Score=42.79 Aligned_cols=44 Identities=27% Similarity=0.246 Sum_probs=34.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A 157 (417)
.|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+
T Consensus 2 dl~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~ 46 (242)
T d1cyda_ 2 NFSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDLVSLA 46 (242)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHH
Confidence 3789 999999965 5999999999999 999988887644433333
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.88 E-value=0.29 Score=38.52 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=29.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++|.|||.|..|--+|..|++. |.+|.+..+.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeecc
Confidence 7899999999999999999998 99988877653
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=87.66 E-value=0.41 Score=43.11 Aligned_cols=85 Identities=14% Similarity=0.021 Sum_probs=51.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe-
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa- 185 (417)
|+| |++-|-|. +-||.++|+.|.+. |.+|++..|+.++..+...+.|- ++..+..=
T Consensus 3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~l~~~~~~~~~---------------~~~~~~~Dv 60 (276)
T d1bdba_ 3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSAERLAELETDHGD---------------NVLGIVGDV 60 (276)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHGG---------------GEEEEECCT
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCC---------------CeeEEeccc
Confidence 688 99999995 58999999999999 99998888764332222222221 11111111
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++.....+=.+|+..+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~g~idilvnnAG~ 89 (276)
T d1bdba_ 61 RSLEDQKQAASRCVARFGKIDTLIPNAGI 89 (276)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCcccccccccc
Confidence 22334456676666555443456666665
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.29 Score=47.64 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=53.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhH---HHHHHc--
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA-- 160 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~---~~A~~~-- 160 (417)
..|++ .||.|||+|-+|..++++|..+ |+ ++.+.+... .++. +...+.
T Consensus 33 ~~l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np 105 (426)
T d1yovb1 33 FLLDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP 105 (426)
T ss_dssp HHHHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred HHHhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC
Confidence 34677 8999999999999999999988 76 444443210 0111 111111
Q ss_pred Cc--eecCCCc-CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 161 GF--TEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 G~--~~~d~~~-~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
.+ ....... ....+.+++.|+|+.++-+......+.++.
T Consensus 106 ~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 106 NCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp TCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred CCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 11 1101111 123567899999999998877777776543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.46 E-value=0.34 Score=43.64 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=52.7
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH---HcCceecCCCcCCHHhh-hccCCeE
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYET-ISGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Ea-v~~ADiV 182 (417)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+. +.|.. ...+ .-.+|+
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~i~~~~~~--------~~~~~~~~~Dv- 65 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNEDRLEETKQQILKAGVP--------AEKINAVVADV- 65 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------GGGEEEEECCT-
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCC--------CcceEEEEeeC-
Confidence 788 999999965 5999999999999 9999888776433222221 12211 0000 112232
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|.
T Consensus 66 ---~~~~~v~~~~~~~~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 66 ---TEASGQDDIINTTLAKFGKIDILVNNAGA 94 (274)
T ss_dssp ---TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ---CCHHHHHHHHHHHHHHcCCceEEEeeccc
Confidence 34455567777766655332367766765
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.25 E-value=0.77 Score=41.17 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=28.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEec
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r 148 (417)
+.|+| ++|+|-|+|+.|..+|+-|. +. |..|+...+
T Consensus 28 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~vsD 64 (239)
T d1gtma1 28 DTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSD 64 (239)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEEC
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceeeccc
Confidence 56899 99999999999999999885 45 776544333
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=87.22 E-value=0.31 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|.|||.|.+|--+|..|... |.+|.+..+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 8999999999999999999988 9998887764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.87 E-value=0.9 Score=40.57 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=54.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhhhccCC
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Eav~~AD 180 (417)
+.|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.++..+... +.|... . .-.+|
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~---------~-~~~~D 65 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKEDEANSVLEEIKKVGGEA---------I-AVKGD 65 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHHHHHHTTCEE---------E-EEECC
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHHHHhcCCcE---------E-EEEcc
Confidence 46899 98888885 57999999999999 9999888886543222221 122110 0 11233
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+ +.++...++++++...+.+=.+|+..+|+
T Consensus 66 v----t~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 66 V----TVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp T----TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred C----CCHHHHHHHHHHHHHHhCCCCEeecccee
Confidence 2 33445556777766655333467777775
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=86.83 E-value=0.71 Score=39.27 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=53.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEe-cC-CchhHHHHHHcCceecCC-CcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEARAAGFTEENG-TLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~-r~-~~~s~~~A~~~G~~~~d~-~~~~~~Eav~~ADiViLavp 187 (417)
.|||||| .|..|.-+.+-|.+. ..+++.... ++ ..+........-....+. .....++...++|+|++++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-----P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-----PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-----CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5899999 789999988877654 123443322 22 222222221110000000 01223456789999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
...-.++.+.+ .+.+.++.+.+++-
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADFR 105 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTTT
T ss_pred cchHHHHHHHH---HhcCcccccchhhh
Confidence 98877766433 23455566666653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.76 E-value=0.41 Score=42.56 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=34.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA 155 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~ 155 (417)
+-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..+++.+..+
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~~ 45 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAAE 45 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHHH
Confidence 45889 999999965 5999999999999 9999887776554433
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=86.57 E-value=0.21 Score=43.94 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.9
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~ 37 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARN 37 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECC
Confidence 688 999999965 5999999999999 9999887775
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=0.47 Score=42.01 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=33.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCch
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~ 152 (417)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~ 43 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQAD 43 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 4789 999999955 6999999999999 9999888776443
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.37 E-value=0.95 Score=40.37 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=28.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGL 147 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~ 147 (417)
..++| ++|+|=|+|+.|...|+.|. +. |..|+...
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~vs 62 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVS 62 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEee
Confidence 46789 99999999999999999994 56 77665443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=86.16 E-value=0.45 Score=37.57 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=29.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEeec
Confidence 7899999999999999999998 99888877653
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=0.4 Score=38.11 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|.|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeec
Confidence 7899999999999999999998 9998888775
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=86.08 E-value=0.45 Score=43.37 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=46.0
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH--HHH----cCc---eecC-CCcCCHHhhhc
Q 014863 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARA----AGF---TEEN-GTLGDIYETIS 177 (417)
Q Consensus 109 ~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~--A~~----~G~---~~~d-~~~~~~~Eav~ 177 (417)
+| |+|.|.| .|.+|..+++.|.+. |++|+...|+.++.... ... ... ...| ....+..+++.
T Consensus 10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 10 EG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred Cc-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence 37 9999999 789999999999999 99987767653321111 100 010 1000 00123557889
Q ss_pred cCCeEEEeecc
Q 014863 178 GSDLVLLLISD 188 (417)
Q Consensus 178 ~ADiViLavpd 188 (417)
++|.|+.+.-.
T Consensus 83 ~~~~v~~~a~~ 93 (342)
T d1y1pa1 83 GAAGVAHIASV 93 (342)
T ss_dssp TCSEEEECCCC
T ss_pred cchhhhhhccc
Confidence 99998865543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.91 E-value=0.59 Score=41.48 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.+...+.+.+.+. ..++..+.
T Consensus 3 rL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~ 60 (251)
T d1zk4a1 3 RLDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHSDVGEKAAKSVGT---------------PDQIQFFQ 60 (251)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCC---------------CCcEEEEE
Confidence 3789 999999954 5999999999999 99998888764332222222110 11222221
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|.
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCceEEEecccc
Confidence 23444556777776655332366766665
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.85 E-value=0.47 Score=42.17 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred CEEEEE-ccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe---e
Q 014863 112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL---I 186 (417)
Q Consensus 112 kkIgII-G~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa---v 186 (417)
|||++| |.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+ +. +. ..+++.+. +
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~--i~----------~~--g~~~~~~~~Dv~ 60 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYNDATAKAVASE--IN----------QA--GGHAVAVKVDVS 60 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH--HH----------HT--TCCEEEEECCTT
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH--HH----------hc--CCcEEEEEeeCC
Confidence 688766 654 5999999999999 99998888764332222211 11 10 11222221 2
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.++...++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 61 DRDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEecccc
Confidence 3444456777776665333367777776
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.72 E-value=0.38 Score=42.97 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=52.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++-|-|.+ -+|.++|+.|.+. |.+|++..|+.++ .+...+ ...+. ..+++.+.
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-~~~~~~-----------~l~~~--g~~~~~~~ 66 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDINADA-ANHVVD-----------EIQQL--GGQAFACR 66 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESCHHH-HHHHHH-----------HHHHT--TCCEEEEE
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHHc--CCcEEEEE
Confidence 3789 988888865 6999999999999 9999888775332 222211 01110 11222222
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 67 ~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 67 CDITSEQELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 23444556777766655333467777775
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.70 E-value=0.44 Score=37.84 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
+++.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence 7899999999999999999998 9998887664
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.69 E-value=0.46 Score=38.29 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~ 67 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA 67 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence 8999999999999999999999 9998887664
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.38 E-value=0.44 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~ 149 (417)
.+|.|||.|.-|.+.|..|++. |+ +|.|..+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence 5899999999999999999999 96 78777664
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.36 E-value=0.42 Score=40.81 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.||+|||.|.-|.+-|..|++. +.|++|.+..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6899999999999999999876 236688887654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=85.25 E-value=0.62 Score=42.30 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg 146 (417)
..|+| +||+|=|+|+.|...|+.|.+. |.+|+..
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvav 65 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTL 65 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE
Confidence 46889 9999999999999999999999 9876544
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.66 Score=38.71 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=43.9
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhH----HHHHHcCceecCCCcCCHHhhhcc
Q 014863 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~----~~A~~~G~~~~d~~~~~~~Eav~~ 178 (417)
|+| +||+|||-|+ +-+|++..+... |+++.+...... ... +.+.+.|.... ...++.+++++
T Consensus 2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~~ 72 (170)
T d1otha2 2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAHG 72 (170)
T ss_dssp CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHTT
T ss_pred CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHhh
Confidence 689 9999999874 344554444444 888766554321 112 22333443211 15689999999
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
+|+|+..+-
T Consensus 73 advi~~~~~ 81 (170)
T d1otha2 73 GNVLITDTW 81 (170)
T ss_dssp CSEEEECCS
T ss_pred hhheeeece
Confidence 999998764
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.74 E-value=0.51 Score=37.26 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8899999999999999999998 9988877654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=84.58 E-value=0.56 Score=39.29 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|||.|||.|..|-..|..|++. +.+.+|++..+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 7899999999999999999986 113467766554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=84.51 E-value=1.2 Score=39.85 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=64.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhhh--ccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETI--SGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Eav--~~AD 180 (417)
..+| ++|.=||||.-..++ .+.+. |.+| ++.+.+....+.|+ ..|+... -...+..+.. ...|
T Consensus 118 ~~~g-~~VLDiGcGsG~l~i--~aa~~------g~~V-~gvDis~~av~~A~~na~~n~~~~~-~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 118 LRPG-DKVLDLGTGSGVLAI--AAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRPR-FLEGSLEAALPFGPFD 186 (254)
T ss_dssp CCTT-CEEEEETCTTSHHHH--HHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCCE-EEESCHHHHGGGCCEE
T ss_pred cCcc-CEEEEcccchhHHHH--HHHhc------CCEE-EEEECChHHHHHHHHHHHHcCCcee-EEeccccccccccccc
Confidence 3567 999999999854444 45556 7775 57777776665555 3555320 0124555544 4689
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+.........++++++...||||-.++++
T Consensus 187 ~V~ani~~~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 187 LLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 9987777777788888999999999877653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.42 E-value=0.34 Score=43.96 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
|..|.|||.|.-|.+.|..|.+. |.+|.|..++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKR 33 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECC
Confidence 56899999999999999999988 9999887765
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=84.38 E-value=1.1 Score=36.29 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC----cee---------------cC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE---------------EN 166 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~---------------~d 166 (417)
...+| .+|-.||||.-- .+..|.+. |++| +|.+.++...+.|++.. ... ..
T Consensus 17 ~~~~~-~rvLd~GCG~G~--~a~~la~~------G~~V-~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 17 NVVPG-ARVLVPLCGKSQ--DMSWLSGQ------GYHV-VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp CCCTT-CEEEETTTCCSH--HHHHHHHH------CCEE-EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred CCCCC-CEEEEecCcCCH--HHHHHHHc------CCce-EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 45577 999999999853 55577777 9986 56776676777776521 100 00
Q ss_pred CCcCCH-HhhhccCCeEEE-----eecchhHHHHHHHHHhcCCCCcEEE
Q 014863 167 GTLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 167 ~~~~~~-~Eav~~ADiViL-----avpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+...+. .+.....|+|+. ++++.....+++.+...||||-.+.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 001111 112234566654 3445555678889999999988654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.37 E-value=0.55 Score=36.58 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 7899999999999999999999 9988877654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.30 E-value=0.68 Score=40.00 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
..-.+ ++|.|||.|.-|.+.|..|++. |++|.+..+.
T Consensus 45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~ 81 (233)
T d1djqa3 45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA 81 (233)
T ss_dssp CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence 44456 9999999999999999999999 9999888654
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=83.97 E-value=0.91 Score=37.53 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=45.6
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-eEEEEecC----CchhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
|+| .||++||= ++...|++..+... |. .+.+.-.. .....+.+...|.... ...+++++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhccccc--cccCHHHHhCcC
Confidence 578 99999996 44899999888766 64 33443322 1222355556665421 146888999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 73 Dvvy~~ 78 (160)
T d1ekxa2 73 DILYMT 78 (160)
T ss_dssp SEEEEC
T ss_pred ceEEee
Confidence 998854
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=83.70 E-value=0.31 Score=43.04 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|++ .||.|||+|-.|..++.+|... |+ ++.+.+
T Consensus 25 Q~kL~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD 61 (247)
T d1jw9b_ 25 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLD 61 (247)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEEC
Confidence 456888 9999999999999999999999 87 444443
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.51 E-value=0.97 Score=44.91 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. .+|.|||+|..|.-+++||.-. |+ .+.+.+
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itivD 56 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTIID 56 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEEc
Confidence 467788 9999999999999999999988 76 455543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.50 E-value=0.47 Score=37.71 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=28.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|+|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhc------CCeEEEEEec
Confidence 5799999999999999999998 9888776653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.31 E-value=0.59 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.1
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+..
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~~ 43 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNEY 43 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 4789 999999966 5999999999999 999888777643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.99 E-value=2.9 Score=34.50 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=60.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC-HHhhh-----ccC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETI-----SGS 179 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~-~~Eav-----~~A 179 (417)
-+| ++|.|.|. |..|.+.++-.+.. |.+|+...++ ++..+.+++.|.... +....+ .+++. ...
T Consensus 28 ~~G-~~VlV~ga~ggvG~~aiqlak~~------Ga~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 28 KGG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp CSS-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCC-CEEEEEeCCCchhHHHHHHHHcc------CCEEEEeCCC-HHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCC
Confidence 357 89999998 55777777777777 9988766655 345678888885421 111112 22222 458
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|+|+-++.. +.+++..+.++++-.++..+
T Consensus 100 d~v~D~vG~----~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 100 DCYFDNVGG----EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred ceeEEecCc----hhhhhhhhhccCCCeEEeec
Confidence 999999874 35667777888877766553
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=82.98 E-value=0.75 Score=40.88 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=32.0
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCch
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~ 152 (417)
.|+| |+|-|.|.+ -+|.++|+.|.+. |.+|++..|..++
T Consensus 2 ~l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~ 41 (254)
T d1sbya1 2 DLTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN 41 (254)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred CCCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence 3789 999999977 4999999999999 9987776665443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.67 E-value=0.8 Score=39.54 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce-e----------------c----CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT-E----------------E----NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~-~----------------~----d~ 167 (417)
+| .+|-.+|||.- ..+..|.+. |++| +|.+..+...+.|.+.--. . . +-
T Consensus 45 ~~-~rvLd~GCG~G--~~a~~LA~~------G~~V-~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 114 (229)
T d2bzga1 45 SG-LRVFFPLCGKA--VEMKWFADR------GHSV-VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL 114 (229)
T ss_dssp CS-CEEEETTCTTC--THHHHHHHT------TCEE-EEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred CC-CEEEEeCCCCc--HHHHHHHhC------CCcE-EEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence 56 79999999993 557778888 9986 6777766666666542110 0 0 00
Q ss_pred CcCCHHhh----hccCCeEE-----EeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 168 TLGDIYET----ISGSDLVL-----LLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 168 ~~~~~~Ea----v~~ADiVi-----Lavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.+.+..+. ....|+|+ .++++......++++...|+||-.+.
T Consensus 115 ~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 115 YCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp EESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence 01222221 12345554 35577777788889999999998654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=82.43 E-value=0.66 Score=41.78 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=33.0
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.++| |||-|.| .|-+|..+++.|.+. |++|++..|...
T Consensus 5 ~~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 5 FWQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAP 43 (356)
T ss_dssp HHTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCS
T ss_pred hhCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCC
Confidence 4788 9999999 899999999999999 999887776543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.35 E-value=0.33 Score=43.10 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=30.5
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
|+| |++-|.| .+.+|.++|+.|.+. |.+|++.+|+.
T Consensus 4 l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~~ 40 (245)
T d2ag5a1 4 LDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDINE 40 (245)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 788 8877777 568999999999999 99998888763
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=81.69 E-value=0.73 Score=40.91 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=32.6
Q ss_pred cccCCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 106 DAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
-.|+| |++-|.|.+. ||.++|+.|.+. |.+|++..+.
T Consensus 4 ~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 4 IDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 46899 9999999864 999999999999 9999888765
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.61 E-value=0.76 Score=39.63 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=46.4
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHH-HHHHcCceecC-CCcCCHHhhhccCCeE
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARAAGFTEEN-GTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~-~A~~~G~~~~d-~~~~~~~Eav~~ADiV 182 (417)
.++ |||.|.| .|.+|..+.+.|.+. |. +|++..|+..+... ......+...| ....+..++++++|+|
T Consensus 12 m~~-k~IlItGaTG~iG~~l~~~Ll~~------g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 12 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHhC------CCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccc
Confidence 345 8999999 899999999999988 74 67777775332111 11111111101 0123456778999999
Q ss_pred EEeec
Q 014863 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+.++-
T Consensus 85 i~~~~ 89 (232)
T d2bkaa1 85 FCCLG 89 (232)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 98763
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.49 E-value=0.87 Score=40.44 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=52.0
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|+| |.+-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+.+.+ .|.. ..++..
T Consensus 3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~ 61 (264)
T d1spxa_ 3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHAERLEETRQQILAAGVS--------------EQNVNS 61 (264)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------------GGGEEE
T ss_pred CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------------cCceEE
Confidence 678 87777784 58999999999999 99998888764332222211 2211 112222
Q ss_pred Ee---ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 184 La---vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+. +.++...++++++.....+=.+|+..+|..
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG~~ 96 (264)
T d1spxa_ 62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAA 96 (264)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC--
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEeecccccc
Confidence 22 234445567777766554434677777763
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=81.42 E-value=3.4 Score=36.55 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=47.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC----c------h--hHHHHHHcCceecCCCcCCH
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----S------R--SFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~----~------~--s~~~A~~~G~~~~d~~~~~~ 172 (417)
+.|+. .||.|.|.|+-|-.++..|++. +. +++..++.+ . . ....+..... .....+.
T Consensus 22 ~~l~d-~riv~~GAGsAg~gia~~l~~~------~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~---~~~~~~l 91 (222)
T d1vl6a1 22 KKIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDL 91 (222)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCH
T ss_pred CChhh-cEEEEEChHHHHHHHHHHHHHh------cccceEeecceeEEEcCcccccccHHHHHHHhhhcc---hhhhcch
Confidence 45677 9999999999999999999988 76 455555431 0 0 0112221111 1123567
Q ss_pred HhhhccCCeEEEeecchhH
Q 014863 173 YETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~ 191 (417)
.++++.+|+++.+.-....
T Consensus 92 ~~~l~g~~~~~g~~~~~~~ 110 (222)
T d1vl6a1 92 ETALEGADFFIGVSRGNIL 110 (222)
T ss_dssp HHHHTTCSEEEECSCSSCS
T ss_pred HhhccCcceeccccccccc
Confidence 7788888877766654433
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=81.07 E-value=0.7 Score=36.58 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++|.|||.|.+|.-+|..+.+. |.+|.+..+.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~------G~~Vtvi~~~ 57 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI------GSEVTVVEFA 57 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEEccchHHHHHHHHHHhc------CCeEEEEEEc
Confidence 7899999999999999999999 9999887664
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.04 E-value=1.3 Score=37.09 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=59.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceec-CCCcCCHHhhhcc-----CCeEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~~-----ADiVi 183 (417)
++|.|.| .|.+|....+-.+.. |.+++++ .+.+++..+.+.+.|.... |....+..+.+++ .|+|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~------Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLL------GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHT------TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHc------CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEE
Confidence 6788888 599999988888777 8765554 4444555566667775321 2223345554444 99999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
=++-. +.++...+.++++-.++..
T Consensus 106 D~vGg----~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 106 DNVGG----DISNTVISQMNENSHIILC 129 (187)
T ss_dssp ESSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred ecCCc----hhHHHHhhhccccccEEEe
Confidence 88863 4566677778777765533
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=80.51 E-value=0.56 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
+..++| |+|+|||.|+-|.-+|..|...
T Consensus 27 ~~~f~g-K~VlVVG~g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 27 PELFVG-ESVLVVGGASSANDLVRHLTPV 54 (107)
T ss_dssp GGGGTT-CCEEEECSSHHHHHHHHHHTTT
T ss_pred hhhcCC-CeEEEECCCCCHHHHHHHHHHh
Confidence 478999 9999999999999999998765
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.22 E-value=1.2 Score=39.38 Aligned_cols=86 Identities=19% Similarity=0.057 Sum_probs=50.5
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe-
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa- 185 (417)
|+| |.+-|.|.+ -||.++|+.|.+. |.+|++..|+.++ .+...+. +. +. ..++..+.
T Consensus 8 len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~~~~-l~~~~~~-l~----------~~--g~~~~~~~~ 66 (251)
T d2c07a1 8 GEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRTQKS-CDSVVDE-IK----------SF--GYESSGYAG 66 (251)
T ss_dssp CSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESSHHH-HHHHHHH-HH----------TT--TCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH-HHHHHHH-HH----------hc--CCcEEEEEc
Confidence 567 777777864 6999999999998 9999888775333 3222210 11 00 11222222
Q ss_pred --ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.++...++++++.....+=.+|+..+|.
T Consensus 67 Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 67 DVSKKEEISEVINKILTEHKNVDILVNNAGI 97 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 23445557788777665333356666664
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=80.04 E-value=1.1 Score=40.14 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=41.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCC----HHhhhccCCeEEEe
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~----~~Eav~~ADiViLa 185 (417)
|||.|+| .|-+|..+++.|.+. |+ +|++.++.............+....+.+.+ .+.+.+++|+|+-+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~------g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~ 74 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE------DHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS------TTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence 5899999 799999999999988 85 555443332211111111222211111212 22367789999986
Q ss_pred ecc
Q 014863 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
.-.
T Consensus 75 a~~ 77 (342)
T d2blla1 75 VAI 77 (342)
T ss_dssp BCC
T ss_pred ccc
Confidence 643
|