Citrus Sinensis ID: 014864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHEc
Coil and Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrreDNMVEIRKNKREESLQKKRREglqnqqplandvnapgtakklenlpVMVAGVwsndsgvqyeCTTQFRKLLsiersppieevirsgvvprfVEFLLREDYPQLQFEAAWALtniasgtsehtkVVIDHGAVPIFVKLlyspsddvREQAVWALGniagdsprcrdlvlsqgglvpllaqlngqpklsmLRNATWTlsnfcrgkpqppfdqvspalpaLAHLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVfprlaeflmhpspsvlipalrtvgnivtgddmqtQCVIEYQALPCLLNLLsgnykksikkeacwtvsnitagnREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISnatsggtheqiKYEHTFCTIFI
Flexible Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrrednmveirknkreeslqkkrreglqnqqplandvnapgtakKLENLPVMVAGVWSNDSGVQYECTTQFRKLlsiersppieevirsgvVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNatsggtheqikyEHTFCTIFI
Low Complexity Region (SEG)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI
Disordered region (IsUnstruct)
***********************************************************************LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK****FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIF*
Disordered Region (DISOPRED)
***********************************IRKNKREESLQK*****************************VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI
Disordered Region (DISEMBL)
****************KVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI
Disordered Region (DISPRO)
**********S*R****VAVDADEGRRRREDNMVEIRKNKREESLQKK******************GTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.976	0.773	0.811	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.976	0.765	0.794	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.973	0.760	0.790	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.935	0.740	0.789	0.0
O04294	531	Importin subunit alpha-2	no	no	0.961	0.755	0.705	1e-171
Q76P29	516	Importin subunit alpha-B	yes	no	0.949	0.767	0.620	1e-140
O35345	536	Importin subunit alpha-7	yes	no	0.896	0.697	0.596	1e-119
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.896	0.697	0.594	1e-118
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.896	0.697	0.594	1e-118
O60684	536	Importin subunit alpha-7	yes	no	0.896	0.697	0.594	1e-118

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/408 (81%), Positives = 367/408 (89%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 61  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 120 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIKY
Sbjct: 360 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 407

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/408 (79%), Positives = 360/408 (88%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct: 61  S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIKY
Sbjct: 360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKY 407

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/415 (79%), Positives = 360/415 (86%), Gaps = 9/415 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP+ +A+ RR++YKVAVDADEGRRRREDNMVEIRK++REESL KKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI 113
               PL    ++    +KLE LP MV  V S+DS VQ E TTQFRKLLSIERSPPIEEVI
Sbjct: 61  AAASPLL--AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVI 118

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
            +GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS++TKVV++ GAVPIFVKLL SPS+
Sbjct: 119 NTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSE 178

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           DVREQAVWALGN+AGDSP+CRDLVL+ GGL PLL QLN   KLSMLRNATWTLSNFCRGK
Sbjct: 179 DVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGK 238

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
           PQP F+QV PAL AL  LIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GVFPRL E 
Sbjct: 239 PQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVEL 298

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           LMHPS SVLIPALRTVGNIVTGDDMQTQCVI++QALPCLLNLL+ N+KKSIKKEACWT+S
Sbjct: 299 LMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTIS 358

Query: 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           NITAGNREQIQAVI ANII PLV LL+ AEFDIKKEAAWAISNATSGGTH+QIKY
Sbjct: 359 NITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKY 413

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/408 (78%), Positives = 357/408 (87%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPNS+ ++RR++YKVAVDA+EGRRRREDNMVEIRKNKREE+L KKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +        KKLE LP ++AGVWS+DS +Q ECTTQFRKLLSIER+PPIEEVI+SGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL R+DYPQLQFEAAWALTNIASGTSE+TKVVID+G+VPIF++LL SPSDDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGNIAGDSP+ RDLVL  G LV LLAQ N Q KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
              ALP L  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL E L+H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCL+NLL+ NYKKSIKKEACWT+SNITAGNR
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
            QIQ VIEA II PLV LL+NAEF+IKKEAAWAISNATSGG H+QIK+
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKF 408

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  600 bits (1548), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/417 (70%), Positives = 344/417 (82%), Gaps = 16/417 (3%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR           
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 54  -QNQQPLANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE 111
            Q +Q L+       +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI E
Sbjct: 61  GQTEQDLS-------SANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINE 113

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
           V++SGVVPR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S 
Sbjct: 114 VVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSA 173

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           S+DVREQAVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCR
Sbjct: 174 SEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCR 233

Query: 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291
           GKP P F+Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL 
Sbjct: 234 GKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLI 293

Query: 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351
           + L H SPSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT
Sbjct: 294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWT 353

Query: 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +SNITAGN +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIK+
Sbjct: 354 ISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKF 410

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  497 bits (1280), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/406 (62%), Positives = 314/406 (77%), Gaps = 10/406 (2%)

Query: 7   SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
           SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct: 64  -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct: 119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct: 179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
            +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct: 239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
            PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct: 299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query: 363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           IQ VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI +
Sbjct: 358 IQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHF 403

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/382 (59%), Positives = 278/382 (72%), Gaps = 8/382 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKY 408
           +KEAAWAI+NATSGGT EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/382 (59%), Positives = 277/382 (72%), Gaps = 8/382 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+D  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKY 408
           +KEAAWAI+NATSGGT EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/382 (59%), Positives = 276/382 (72%), Gaps = 8/382 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKY 408
           +KEAAWAI+NATSGGT EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/382 (59%), Positives = 276/382 (72%), Gaps = 8/382 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKY 408
           +KEAAWAI+NATSGGT EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
255542844	531	importin alpha, putative [Ricinus commun	0.976	0.766	0.845	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.976	0.769	0.840	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.976	0.769	0.838	0.0
225450645	527	PREDICTED: importin subunit alpha-1 isof	0.976	0.772	0.835	0.0
359487526	528	PREDICTED: importin subunit alpha-1 isof	0.976	0.770	0.833	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.976	0.765	0.831	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.976	0.765	0.831	0.0
449454044	529	PREDICTED: importin subunit alpha-1-like	0.976	0.769	0.833	0.0
449490863	529	PREDICTED: importin subunit alpha-1-like	0.976	0.769	0.833	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.928	0.730	0.828	0.0

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/408 (84%), Positives = 377/408 (92%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQPMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS+DS +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAVEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+T+VVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           EQIQAVIEANIIGPLV LLENAEFDIKKEAAWAISNATSGGTH+QIKY
Sbjct: 360 EQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKY 407

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/408 (84%), Positives = 375/408 (91%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAIP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  AALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +Q+LPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           EQIQAVIEAN+IGPLV LL+NAEFDIKKE+AWAISNATSGGTHEQIKY
Sbjct: 360 EQIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKY 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/408 (83%), Positives = 374/408 (91%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVW+ D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAAEKKLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG HEQIKY
Sbjct: 360 EQIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKY 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/408 (83%), Positives = 373/408 (91%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIKY
Sbjct: 360 EQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKY 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487526|ref|XP_003633608.1| PREDICTED: importin subunit alpha-1 isoform 2 [Vitis vinifera]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/409 (83%), Positives = 373/409 (91%), Gaps = 2/409 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD- 239
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFD 
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
           Q  PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSP
Sbjct: 240 QTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIKY
Sbjct: 360 KEQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKY 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/410 (83%), Positives = 372/410 (90%), Gaps = 3/410 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDADEGRRRRED MVEIRKN+REESLQKKRREG Q QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGFQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  IPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           N++QIQAVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+
Sbjct: 360 NKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKF 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/410 (83%), Positives = 373/410 (90%), Gaps = 3/410 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESLQKKRREGLQ QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           N++QIQAVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+
Sbjct: 360 NKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKF 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454044|ref|XP_004144766.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/408 (83%), Positives = 370/408 (90%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN +A+ RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ QQ L 
Sbjct: 1   MSLRPNERAEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQQ-LQ 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
              ++    KKLE LP MVAG+WS+D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  TSTHSSVVEKKLEYLPSMVAGIWSDDGSLQLESTTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDS RCRDLVL  G LVPLLAQLN Q KLSMLRNATWTLSNFCRGKPQP FD 
Sbjct: 180 WALGNVAGDSSRCRDLVLGHGALVPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPAFDL 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E LMHP+PS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPAPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDLQTQVIIQHNALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
            QIQAVI+ANI+ PLV LL+NAEFDIKKEAAWAISNATSGG+H+QIKY
Sbjct: 360 AQIQAVIDANIVAPLVHLLQNAEFDIKKEAAWAISNATSGGSHDQIKY 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490863|ref|XP_004158728.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/408 (83%), Positives = 370/408 (90%), Gaps = 1/408 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN +A+ RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ QQ L 
Sbjct: 1   MSLRPNERAEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQQ-LQ 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
              ++    KKLE LP MVAG+WS+D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  TSTHSSVVEKKLEYLPSMVAGIWSDDGSLQLESTTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDS RCRDLVL  G LVPLLAQLN Q KLSMLRNATWTLSNFCRGKPQP FD 
Sbjct: 180 WALGNVAGDSSRCRDLVLGHGALVPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPAFDL 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E LMHP+PS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPAPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDLQTQVIIQHNALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
            QIQAVI+ANI+ PLV LL+NAEFDIKKEAAWAISNATSGG+H+QIKY
Sbjct: 360 AQIQAVIDANIVAPLVHLLQNAEFDIKKEAAWAISNATSGGSHDQIKY 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/408 (82%), Positives = 368/408 (90%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +      KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVLSQG LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+Q
Sbjct: 181 WALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL + L+HPSPS
Sbjct: 241 VRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I + ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           EQIQ VIEA ++ PLV LL+NAEFDIKKEAAWAISNATSGG HEQIKY
Sbjct: 361 EQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKY 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.978	0.762	0.808	2.1e-173
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.976	0.765	0.794	1.8e-172
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.978	0.758	0.746	9.6e-160
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.978	0.768	0.709	1.2e-154
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.978	0.756	0.701	1.6e-150
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.966	0.776	0.624	6.2e-133
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.949	0.767	0.620	2.3e-126
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.923	0.729	0.638	3e-124
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.952	0.720	0.626	3e-124
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.952	0.717	0.619	5.8e-121

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 333/412 (80%), Positives = 364/412 (88%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ-NQQP- 58
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESLQKKRREGLQ NQ P 
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    59 -LANDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
                + V A  T  KKLE+LP MV GVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSE+TKVVI+HGAVPIFV+LL S SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
             EQAVWALGN+AGDSPRCRDLVL QG L+PLL+QLN   KLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             PFDQV PALPAL  LIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRL E L H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
              SPSVLIPALR++GNIVTGDD+QTQCVI + AL  LL+LL+ N+KKSIKKEACWT+SNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             AGNR+QIQAV EA +I PLV LL+NAEFDIKKEAAWAISNATSGG+ +QIKY
Sbjct:   361 AGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKY 412

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1676 (595.0 bits), Expect = 1.8e-172, P = 1.8e-172
 Identities = 324/408 (79%), Positives = 360/408 (88%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    61 NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct:    61 S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
             FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
             WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
             VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             +QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIKY
Sbjct:   360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKY 407

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
 Identities = 309/414 (74%), Positives = 349/414 (84%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG--LQNQQP 58
             MSLRP+++A+ R+  YK  VDADE RRRREDN+VEIRKNKRE+SL KKRREG  LQ Q P
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    59 LANDVNAPGTA----KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR 114
             L   ++ P TA    K+LE +P+MV GV+S+D   Q E TTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS+HT+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
             VREQAVWALGN+AGDSP CR+LVL+ G L PLLAQLN   KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
               PF+QV PALP L  LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGV PRL E L
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
              H SP+VLIPALRTVGNIVTGDD QTQ +IE   LP L NLL+ N+KKSIKKEACWT+SN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             ITAGN+ QI+AV+ A II PLV LL+NAEFDIKKEAAWAISNATSGG+HEQI+Y
Sbjct:   361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQY 414

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
 Identities = 291/410 (70%), Positives = 340/410 (82%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR-REGLQNQQPL 59
             MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR    +      
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    60 ANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
                     +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI EV++SGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             AVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL + L H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             PSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT+SNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             N +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIK+
Sbjct:   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKF 410

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1469 (522.2 bits), Expect = 1.6e-150, P = 1.6e-150
 Identities = 289/412 (70%), Positives = 335/412 (81%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQ---Q 57
             MS +P++K + RRN+YKV+VDADEGRRRREDNMVEIRKNKREE+LQKKRREG       Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             P  +  ++  T  +LEN+  M+AGV S D  +Q E T  FR+LLSIER+PPI EV++SGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSE+T+V+ID GAVP+FVKLL S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
             QAVWALGN+AGDSP+CRD VLS   ++ LLAQ +   KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   238 FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             F+Q    ALPAL  L+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRL + L H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             PSPSVLIPALRT+GNIVTGDD+QTQ VI  QALP LLNLL   YKKSIKKEACWT+SNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             AGN  QIQ V +A II PL+ LLE  EF+IKKEA WAISNATSGG H+QIK+
Sbjct:   361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKF 412

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1303 (463.7 bits), Expect = 6.2e-133, P = 6.2e-133
 Identities = 256/410 (62%), Positives = 318/410 (77%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL--QNQQP 58
             MSLRP++K + RR +YKV+VDA+EGRRRRED +VEIRK+KR E+L KKRR  +   + + 
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    59 LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
             ++ND   P   + L  +  M+ GV+S+D  +Q E TT+FR +LS +RSPP + VI+SGVV
Sbjct:    61 ISND---P--FESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVV 115

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PRFVEFL ++D P+LQFEAAWALTNIASG SEHTKVVIDHG VP+FV+LL SP DDVREQ
Sbjct:   116 PRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQ 175

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             A+W LGN+AGDS +CRD VL+ G  +PLL QLN    LS+LRNATWTLSNF RGKP PPF
Sbjct:   176 AIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPF 235

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             D V   LP L  L++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRL E L H S
Sbjct:   236 DLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHAS 295

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             P VL+PALR +GNIV+G+  QT CVI    LP L +LL+ N+ + I++EACWT+SNITAG
Sbjct:   296 PVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAG 355

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
               EQIQ+VI+AN+I  LV L ++AEFDIKKEA WAISNA+ GG+  QIKY
Sbjct:   356 LEEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKY 405

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 252/406 (62%), Positives = 314/406 (77%)

Query:     7 SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
             SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query:    65 APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                  ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct:    64 -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query:   125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
             L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct:   119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query:   185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
             NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct:   179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query:   243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
              +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct:   239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query:   303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
              PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct:   299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query:   363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             IQ VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI +
Sbjct:   358 IQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHF 403

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
 Identities = 254/398 (63%), Positives = 303/398 (76%)

Query:    12 RRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKK 71
             RR+ YK  VD   GRRRRED+MVEIRK KREESL KKRRE L +  P A+ ++     +K
Sbjct:    10 RRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHS-PSADSLD-----QK 63

Query:    72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDY 130
             L      ++ +WS++  +  E TTQ R LL  E  +  +EEVI++G+VPRFVEFL  +D 
Sbjct:    64 L------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDS 117

Query:   131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             PQLQFEAAWALTNIASGTSE+T+VVIDHGAV I V+LL SP D VREQ VWALGNI+GDS
Sbjct:   118 PQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDS 177

Query:   191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             PRCRD+VL    L  LL QLN   KLSML NA WTLSN CRGKPQPPFDQVS ALPALA 
Sbjct:   178 PRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQ 237

Query:   251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             LI  +D E+L   CWAL YLSDG+N+KIQAVIEA V  RL    +H SPSV+ PALRT+G
Sbjct:   238 LIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIG 297

Query:   311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
             NIVTG+D QTQ +I+ QALPCL+NLL G+Y K+I+KEACWTVSNITAG + QIQAV +A+
Sbjct:   298 NIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDAD 357

Query:   371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
             I   LV LL+N+E D+KKEAAWAI NA +GG+++QI +
Sbjct:   358 ICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMF 395

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
 Identities = 258/412 (62%), Positives = 306/412 (74%)

Query:    10 DSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN------ 61
             + RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G    +P A+      
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    62 --DVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
               D  AP  ++  E+LP MV GV+S     Q + TT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238
             VWALGNIAGDSP+CRD VLS G L PLL  L    KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
               ++PALP LA L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RL E LMH S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              SV  PALR+VGNIVTGDD+QTQ +I   ALPCLL+LL  N K  I+KEACWT+SNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKY 408
             N  QIQ+V++ANII PL+ LL N +   +KEA WAISNATSGG    +QI+Y
Sbjct:   366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRY 417

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 256/413 (61%), Positives = 303/413 (73%)

Query:    10 DSRRNKYKVAVD--ADEGRRRREDNMVEIRKNKREESLQKKR----REG---LQNQQPLA 60
             + RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +      A
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 -NDVNAPGTAKKLE-NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
              +D  A     +L   LP MV GV+S+    Q + TT+FRKLLS ER+PPIE VI +GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237
             AVWALGNIAGDSP+CRD VL+ G L PLL  +N   K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
             ++ ++PALP LA LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RL E LMH 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
             S SV  PALR+VGNIVTGDD+QTQ +I   ALP LL+LLS   K  I+KEACWT+SNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKY 408
             GN  QIQ+VI+A II PLV LL N +F  +KEA WAISNATSGG    +QI+Y
Sbjct:   366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRY 418

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5968	0.8968	0.6977	yes	no
O14063	IMA1_SCHPO	No assigned EC number	0.5533	0.9400	0.7232	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5942	0.8968	0.6977	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5606	0.9208	0.7084	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7941	0.9760	0.7650	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6206	0.9496	0.7674	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7892	0.9352	0.7400	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5942	0.8968	0.6977	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5942	0.8968	0.6977	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8112	0.9760	0.7737	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-172
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-37
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-32
pfam01749	97	pfam01749, IBB, Importin beta binding domain	6e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-14
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-11
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-11
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-10
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	3e-09
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.001
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.001
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  490 bits (1264), Expect = e-172
 Identities = 235/412 (57%), Positives = 283/412 (68%), Gaps = 7/412 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
            + R   +A     K K    ADE RRRRE+  VE+RK KREE L K+R   L +    A
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRR--NLADVSEEA 58

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
                P   +    LP +   ++S+D   Q +   +FRKLLS E SPPI+ VI +GVVPR
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEF+       LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL S  DDVREQAV
Sbjct: 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK-PQPPF 238
           WALGNIAGDS  CRD VL  G L PLL  L      +SMLRNATWTLSN CRGK P P +
Sbjct: 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +S ALP LA LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RL E L H S
Sbjct: 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             +  PALR+VGNIVTG D QTQ +I   AL    +LLS + K++I+KEACWT+SNITAG
Sbjct: 299 AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAG 357

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKY 408
           N EQIQAVI+AN+I PL+ LL +AE+ IKKEA WAISNATSGG +  + I+Y
Sbjct: 358 NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRY 409

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  130 bits (328), Expect = 9e-37
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           E VI++G +P  V  LL      +Q EAAWAL+N+++G +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           S  ++V + A+WAL N+A      + +VL  GG VP L  L       + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 230 CR 231
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (295), Expect = 4e-32
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           +  LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P L + L      V
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  AL  + N+  G +     V+E   +P L+NLL  +  + I+K A   +SN+ +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  113 bits (285), Expect = 6e-31
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 4  RPNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND 62
             +K + RR  YK    DA+E RRRRE+  VE+RKNKREE L K+R  GL  +     +
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 VNAPGTA---KKLENLPVMVAGVWSNDSGVQYECTTQ 96
              G++   +    LPVMV GV S+D   Q   T  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
           S+D  VQ E       L S   +  I+ V+ +G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           +A+G  ++  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   LP L++LLS +  +++++EA W +SN++AGN + IQAV+EA  +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 383 EFDIKKEAAWAISNATSGGTHEQIKYEH 410
           + ++ K A WA+ N  +G    ++    
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLE 89

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 57.5 bits (140), Expect = 3e-11
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           + E+ + VI+ GAVP  V+LL SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
             E+ + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
           + E  QAVIEA  + PLV LL + + ++++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.2 bits (116), Expect = 6e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 105 RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
                + V+ +G +P  VE LL+ +  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 106 SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
               + VI +G VP  V+ LL     ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQ-LLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
           + E  QAV++A  +  LV LL++ + ++ KEAAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
           + +  QAVIEAG  P L + L  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +   +E LL +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 178 QAVWALGNIAGDS 190
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + A+P L  L+ S D+EV  +A WALS L+ 
Sbjct: 11  AGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
                Q VIE  A+P L+ LLS    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 9e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
            ++  QAV++AG  P L E L      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSD 272
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           DD   Q V++   LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +AVI+A  +  LV+LL +++ ++++EAAWA+SN ++ G ++ I+ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSA-GNNDNIQA 44

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           VRE A  ALG +AG  P      + +  L+P L  L       +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           SP  +  V+  G + PL+  L+  P   +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLS-SPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 52/252 (20%), Positives = 85/252 (33%), Gaps = 49/252 (19%)

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
            +  LL ++   ++  AA AL  + S             AVP+  +LL      VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
            ALG +    P           + PL+  L       +   A   L      +       
Sbjct: 96  DALGEL--GDPEA---------VPPLVELLENDENEGVRAAAARAL-GKLGDE-----RA 138

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---FPRLAEFLMHP 297
           + P L AL      +    L  A   +   +       +A+ E G     P L E L   
Sbjct: 139 LDPLLEALQDEDSGSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIELLEDE 192

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G +  G +         +A   L+  LS +    ++K A   +  I  
Sbjct: 193 DADVRRAAASALGQL--GSEN-------VEAADLLVKALS-DESLEVRKAALLALGEI-- 240

Query: 358 GNREQIQAVIEA 369
           G+ E + A+ +A
Sbjct: 241 GDEEAVDALAKA 252

Length = 335

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIA 187
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 18/155 (11%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWAL 183
           LL       Q  AA  L  +          V+D GAV   +KLL   ++  VR +A  AL
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256

Query: 184 GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM--------LRNATWTLSNFCRGKPQ 235
             ++  S   +  +   GG+  L+       K  M          NA   L+N C G   
Sbjct: 257 EALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG--- 313

Query: 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSY 269
                +S  +  L  L  S      + D   AL+Y
Sbjct: 314 -----MSALILYLGELSESPRSPAPIADTLGALAY 343

Length = 2102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.91
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.8
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
PRK09687	280	putative lyase; Provisional	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.72
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.69
PRK09687	280	putative lyase; Provisional	99.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.67
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.65
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.6
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.59
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.58
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.57
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.55
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.54
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.54
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.52
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.49
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.49
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.46
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.41
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.39
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.39
PTZ00429	746	beta-adaptin; Provisional	99.38
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.37
PTZ00429	746	beta-adaptin; Provisional	99.34
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.34
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.32
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.3
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.29
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.25
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.21
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.21
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.17
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.17
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.11
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.98
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.98
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.98
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.92
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.89
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.87
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.87
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.82
TIGR02270	410	conserved hypothetical protein. Members are found	98.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.74
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.71
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.71
COG5369	743	Uncharacterized conserved protein [Function unknow	98.71
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.7
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.68
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.66
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.64
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.62
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.58
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.57
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.57
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.56
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.55
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.54
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.53
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.53
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.51
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.51
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.47
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.47
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.47
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.45
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.44
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.43
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.43
TIGR02270	410	conserved hypothetical protein. Members are found	98.42
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.41
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.39
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.39
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.37
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.37
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.35
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.31
COG5369	743	Uncharacterized conserved protein [Function unknow	98.29
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.28
PF05536	543	Neurochondrin: Neurochondrin	98.24
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.23
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.22
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.22
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.21
KOG0567	289	consensus HEAT repeat-containing protein [General	98.19
PF05536	543	Neurochondrin: Neurochondrin	98.18
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.17
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.17
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.16
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.14
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.13
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.12
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.07
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.07
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.06
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.04
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.04
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.03
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.02
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.99
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.98
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.91
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.9
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.89
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.87
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.83
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.82
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.78
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.75
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.75
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.75
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.75
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.72
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.7
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.69
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.65
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.65
KOG0567	289	consensus HEAT repeat-containing protein [General	97.61
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.61
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.59
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.57
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.55
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.54
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.54
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.54
PF05004	309	IFRD: Interferon-related developmental regulator (	97.51
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.49
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.49
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.48
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.44
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.41
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.4
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.39
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.37
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.35
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.35
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.35
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.33
PF05004	309	IFRD: Interferon-related developmental regulator (	97.33
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.24
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.23
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.21
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.17
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.15
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.1
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.1
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.04
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.03
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.02
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.01
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.0
KOG2956	516	consensus CLIP-associating protein [General functi	97.0
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.96
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.89
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.85
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.84
KOG2956	516	consensus CLIP-associating protein [General functi	96.83
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.79
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.74
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.68
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.66
KOG3036	293	consensus Protein involved in cell differentiation	96.62
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.6
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.55
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.53
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.52
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.44
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.42
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.32
KOG3036	293	consensus Protein involved in cell differentiation	96.3
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.22
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.15
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.07
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.03
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.02
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.98
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.98
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.98
KOG2933	334	consensus Uncharacterized conserved protein [Funct	95.86
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.86
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.77
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.72
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.67
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.63
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.63
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.61
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.61
KOG1243	690	consensus Protein kinase [General function predict	95.58
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.42
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.41
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.38
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.3
KOG1243	690	consensus Protein kinase [General function predict	95.3
PRK14707	2710	hypothetical protein; Provisional	95.23
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.19
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.05
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.02
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	95.01
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.98
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.96
KOG2025	892	consensus Chromosome condensation complex Condensi	94.89
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.83
PRK14707	2710	hypothetical protein; Provisional	94.77
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.7
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.67
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.62
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.58
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.55
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	94.51
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.49
KOG2005	878	consensus 26S proteasome regulatory complex, subun	94.46
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.4
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.35
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.3
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.19
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.03
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.0
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.95
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.87
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.69
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.65
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.54
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.43
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.42
KOG2025	892	consensus Chromosome condensation complex Condensi	93.4
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.32
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.16
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	93.02
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.94
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.88
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.62
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	92.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.32
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.16
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.14
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.04
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.03
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.01
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	91.99
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.63
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	91.49
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	91.35
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	91.19
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	91.07
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.71
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.67
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.44
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	90.26
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	90.15
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	89.99
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.92
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	89.91
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.89
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	89.88
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	89.52
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.49
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	89.48
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.07
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	88.99
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	88.94
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	88.25
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	87.82
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.62
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	87.5
KOG2038	988	consensus CAATT-binding transcription factor/60S r	87.01
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	86.93
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.88
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	86.66
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.37
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.3
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.77
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	85.68
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	85.45
KOG0413	1529	consensus Uncharacterized conserved protein relate	85.22
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	84.98
KOG0301	745	consensus Phospholipase A2-activating protein (con	84.69
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	83.7
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	83.31
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	83.29
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	82.87
KOG2549	576	consensus Transcription initiation factor TFIID, s	82.44
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.33
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	82.24
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.97
COG5110	881	RPN1 26S proteasome regulatory complex component [	81.91
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	81.77
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	81.74
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	81.65
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	81.34
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	80.51
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	80.12

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1e-76  Score=497.15  Aligned_cols=406  Identities=57%  Similarity=0.865  Sum_probs=373.6

Q ss_pred             CCchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcC
Q 014864            7 SKADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS   84 (417)
Q Consensus         7 ~~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s   84 (417)
                      ..++.|+.+||. | +.++|+||+|+++++||||+||+|.|.||||.....+..+.+  ..+..++.-..+|.+.+.|.|
T Consensus         5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l~S   82 (526)
T COG5064           5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQLFS   82 (526)
T ss_pred             cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHHhh
Confidence            478899999998 4 889999999999999999999999999999973221111111  112222222468999999999


Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHH
Q 014864           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  164 (417)
                      +|.+.|..|...+|++++.+.+|+++.++++|++|.+++++.+.....++++|+|+|+|+++++..++..+++.|++|.+
T Consensus        83 dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf  162 (526)
T COG5064          83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF  162 (526)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH
Confidence            99999999999999999999999999999999999999999654447899999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-chhHHHHHHHHHhhhhcCC-CCCChhhhh
Q 014864          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQVS  242 (417)
Q Consensus       165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~~  242 (417)
                      +++|.+++.+++++++|+|+|++++++.+|+.+++.|++++++.++..+. +..+.+++.|+|+|||+++ |.+.+..+.
T Consensus       163 iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is  242 (526)
T COG5064         163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS  242 (526)
T ss_pred             HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999995443 5799999999999999998 888888999


Q ss_pred             chHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014864          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (417)
Q Consensus       243 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~  322 (417)
                      ..+|.|.+++.+.|+++..+|||+++||++++.+.++.+++.|+.++|+.+|.+++..++.+|++.+||+++|++.+++.
T Consensus       243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv  322 (526)
T COG5064         243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV  322 (526)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-
Q 014864          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-  401 (417)
Q Consensus       323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~-  401 (417)
                      +++.|+++.+..+|.++ ...+|++|||+++||++|+.++++++++.+++|.|+.+|+..+++++++|||++.|...++ 
T Consensus       323 iI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~  401 (526)
T COG5064         323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL  401 (526)
T ss_pred             heecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999 8899999999999999999999999999999999999999999999999999999999997 


Q ss_pred             -CHHHHHHHHhcCcc
Q 014864          402 -THEQIKYEHTFCTI  415 (417)
Q Consensus       402 -~~~~~~~l~~~g~i  415 (417)
                       -+++++||+++|-|
T Consensus       402 ~~PD~iryLv~qG~I  416 (526)
T COG5064         402 NRPDIIRYLVSQGFI  416 (526)
T ss_pred             CCchHHHHHHHccch
Confidence             57999999999975

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-73  Score=515.57  Aligned_cols=403  Identities=67%  Similarity=1.005  Sum_probs=371.8

Q ss_pred             chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcCCCh
Q 014864            9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS   87 (417)
Q Consensus         9 ~~~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~   87 (417)
                      ...|+++||+ +++++|+||||++..+|+||+||+|.+.|||+..++..    ...............+..+..+.|+++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~   80 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELM----LDELLSDSQSQASNLELMLAALYSDDP   80 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcc----cccccchhHHHhhhhHHHHHHHhCCCH
Confidence            3456677776 79999999999999999999999999999999222111    111122222233447888999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (417)
                      ..+..+...++++++.+.+|+++.++..|++|.|+++|...+++.++++|+|+|+|++++++++++.+++.|++|.|+.+
T Consensus        81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L  160 (514)
T KOG0166|consen   81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL  160 (514)
T ss_pred             HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence            99999999999999999889999999999999999999877669999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHH
Q 014864          168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP  246 (417)
Q Consensus       168 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~  246 (417)
                      +.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|
T Consensus       161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp  240 (514)
T KOG0166|consen  161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP  240 (514)
T ss_pred             hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999965555689999999999999999 8889999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (417)
Q Consensus       247 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  326 (417)
                      .|..++++.|++|+.++||+++||+++.++.++.+++.|+++.|+.+|.+.++.++.+|++++||+++|++.+++.+++.
T Consensus       241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~  320 (514)
T KOG0166|consen  241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS  320 (514)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      |++|.|..++..++...++++|||+++||++|++++++.+++.|++|.|+.+|+.+++++|++|+|+++|++.+|+++|+
T Consensus       321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi  400 (514)
T KOG0166|consen  321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI  400 (514)
T ss_pred             ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence            99999999999554778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcc
Q 014864          407 KYEHTFCTI  415 (417)
Q Consensus       407 ~~l~~~g~i  415 (417)
                      .||++.|-|
T Consensus       401 ~yLv~~giI  409 (514)
T KOG0166|consen  401 KYLVEQGII  409 (514)
T ss_pred             HHHHHcCCc
Confidence            999999954

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-44  Score=325.85  Aligned_cols=325  Identities=28%  Similarity=0.445  Sum_probs=297.1

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.+|.+++.|.. .++.+|+.|+++|.+++++. .+..+.+++.|.+|.|+.++.+++ .+++.+|+|+|+|++.+++..
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999985 56999999999999999987 788888999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      +..+++.|+++.|+.++..++. .+..++.|+|.|+|.+....-..-.-..+++.|..++ .+.|+++...++|++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987665 7889999999999976522222223344789999999 9999999999999999999


Q ss_pred             cCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHH
Q 014864          231 RGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT  308 (417)
Q Consensus       231 ~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~  308 (417)
                      .+.+... .....+++|.|+.+|.++++.++..++++++|++.+++...+.+++.|+++.|..++. ++...++..|||+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            8874443 4444899999999999999999999999999999999999999999999999999999 5567799999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      |+||+.|+.++++.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.++++|...|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 99999999999999997 789999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 014864          388 KEAAWAISNATSGG  401 (417)
Q Consensus       388 ~~a~~~L~nl~~~~  401 (417)
                      ..++.+|.|+...+
T Consensus       425 ~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  425 LVALDGLENILKVG  438 (514)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998876

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.8e-43  Score=297.27  Aligned_cols=328  Identities=26%  Similarity=0.378  Sum_probs=292.4

Q ss_pred             ccCHHHHHhhhc-CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        72 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      -+.+|.+++++. .+..-.++.|+++|.+++++. ....+.++++|.+|.++++|.+++ .+++.+++|+|+|++.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            378999999995 466778999999999999987 677777899999999999999999 89999999999999999999


Q ss_pred             hHHHHHhCCChhHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          151 HTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      .+..+++.|++..++.++.+.  +..+...+.|+|+|+|++...--+.-.-...++.|.+++ .+.|+++...|+|++++
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY  269 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence            999999999999999999874  458899999999999965321111111223688899998 88899999999999999


Q ss_pred             hhcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864          229 FCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (417)
Q Consensus       229 l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~  307 (417)
                      |+.++.......+ .++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|+++...++..|||
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW  349 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW  349 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence            9998644333333 677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEF  384 (417)
Q Consensus       308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~  384 (417)
                      +|+|+..|+.++++.+++.+++|+|+.+|.+. +..++++|||+++|.+++   .|+.++++++.|+|..|+++|...+.
T Consensus       350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN  428 (526)
T COG5064         350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN  428 (526)
T ss_pred             eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence            99999999999999999999999999999998 999999999999999974   68999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhhCCCCH
Q 014864          385 DIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       385 ~v~~~a~~~L~nl~~~~~~  403 (417)
                      ++-+-++.++.|+...|..
T Consensus       429 kiiev~LD~~eniLk~Ge~  447 (526)
T COG5064         429 KIIEVALDAIENILKVGEQ  447 (526)
T ss_pred             cchhhhHHHHHHHHhhhhH
Confidence            8999999999999888743

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=8.4e-37  Score=315.30  Aligned_cols=337  Identities=20%  Similarity=0.203  Sum_probs=288.0

Q ss_pred             ccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      -+.++.+++.|.++++..|..|+..+.+++... .+..+.+++.|++|.|+++|.+++++.+|++|+|+|++++.+++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            378999999999999999999999998887654 4578889999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCChhHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------HHH---HHHhcCCHHHHHH
Q 014864          152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRD---LVLSQGGLVPLLA  208 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~---~~~~~g~i~~L~~  208 (417)
                      ++.+++.|++|.|+.++.+++         ..++++|+|+|+|||++.+.           .++   .....|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998654         34699999999999987543           222   1244578888888


Q ss_pred             HhcCCCchhHH----HHHHHHHhhhhcCC-CCCChhh-------------------hhchHHHHHHhhcCCChHHHHHHH
Q 014864          209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFDQ-------------------VSPALPALAHLIHSNDDEVLTDAC  264 (417)
Q Consensus       209 ll~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~L~~ll~~~~~~v~~~a~  264 (417)
                      ++ +.++...+    ..++|+|.+|++++ |......                   ..++++.|+.++...+.+++.+++
T Consensus       347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            88 44444333    36789999999986 3331211                   135677889999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhH
Q 014864          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (417)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  344 (417)
                      |+|.+++.++++..+.+.+.|+++.|+.+|.+++..++..|+++|++++.++++++..++++|++|.|+++|.++ +..+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHT  411 (417)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~  411 (417)
                      +++|+|+|+|++.++++....+.+.|+++.|+++|+++++++++.|+|+|.|++..++.++++.+++
T Consensus       505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~  571 (2102)
T PLN03200        505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA  571 (2102)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            9999999999999655444444478999999999999999999999999999998888777766553

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=297.53  Aligned_cols=337  Identities=19%  Similarity=0.173  Sum_probs=299.2

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ++++.++.+|...+.+.|..++++|..++.++ +..++.+.+.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788899999999999999999999997664 677888999999999999999988 8999999999999999888999


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+...|++++|++++ .+.+...+..++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888999999999999 667899999999999999743


Q ss_pred             CCCC---------------------------------Ch-----hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864          233 KPQP---------------------------------PF-----DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (417)
Q Consensus       233 ~~~~---------------------------------~~-----~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  274 (417)
                      ....                                 ..     ....+++|.|..++.++++.++..|+|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            2110                                 00     012478999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                      .+..+.++..|+++.++.+|.+.+.+++..++++|++++.+.. .+...+++.|++++|+++|++. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            9988899999999999999999999999999999999996444 5556678999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHH-HHHHHhcCc
Q 014864          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-IKYEHTFCT  414 (417)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~l~~~g~  414 (417)
                      |++.. ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+.+.++ +...+...|
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g  780 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG  780 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence            99986 4456667788999999999999999999999999999999988776 544444444

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.1e-29  Score=210.50  Aligned_cols=322  Identities=21%  Similarity=0.308  Sum_probs=284.3

Q ss_pred             ccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      .+++..+.++-++.|..+|..++.+|.++...  .++.+.++..|.+|.|++++++++ +++|+.++.++++++-+ ...
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~~  241 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RRA  241 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HHH
Confidence            36788888877889999999999999998643  688899999999999999999999 99999999999999985 778


Q ss_pred             HHHHHhCC--ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          152 TKVVIDHG--AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       152 ~~~i~~~g--~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ++.+.+.+  .+|.|+.++.+++++++-+|..+|+|++.+.. ++..+.+.|.+|.+++++ +++..........++.|+
T Consensus       242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrni  319 (550)
T KOG4224|consen  242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNI  319 (550)
T ss_pred             HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhc
Confidence            88888887  99999999999999999999999999999887 667788999999999999 777777778888899999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864          230 CRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (417)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~  308 (417)
                      +-.+-+.......|++..|+.+|...| ++++..+..+|.+|+.........+.++|.+|.+..++.+....++...-.+
T Consensus       320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac  399 (550)
T KOG4224|consen  320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC  399 (550)
T ss_pred             ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence            998766667777899999999998775 5599999999999998788888899999999999999999999999999899


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------CCCHHHHHHHhccC
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ANIIGPLVALLENA  382 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~~L~~~l~~~  382 (417)
                      ++.++.... ....+.+.|++|.|+.++.+. +.+++-+|+-+|.|+++.-. +...+++      .|+-..|++++.++
T Consensus       400 ~a~Lal~d~-~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~L~Rfl~S~  476 (550)
T KOG4224|consen  400 IAQLALNDN-DKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGRLARFLASH  476 (550)
T ss_pred             HHHHHhccc-cHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence            988886544 456689999999999999999 99999999999999998533 3333332      57778999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCCC
Q 014864          383 EFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       383 ~~~v~~~a~~~L~nl~~~~~  402 (417)
                      +..++..+.|++..+....+
T Consensus       477 ~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  477 ELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999988754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.1e-29  Score=212.62  Aligned_cols=331  Identities=20%  Similarity=0.245  Sum_probs=290.9

Q ss_pred             hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      .+.++..++..+.++...+|..++.++.+++..  +.+.-.+...|.+.++..+-++.+ ..+|..++.+|.|++.. .+
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~E  199 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RE  199 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hh
Confidence            456788888888888889999999999999865  566667889999999999878877 89999999999999874 89


Q ss_pred             hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      +++.++..|++|.|+.++++.+..+++.|+.+++||+.+.. .|+.+.+.+  .++.|++++ ++.++.++-.|..+|.|
T Consensus       200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998776 688888888  899999999 88999999999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-hhhHHHHHH
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR  307 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~v~~~a~~  307 (417)
                      ++.+..........+.+|.++++|+++..........|+.|++.++-. ...+.++|++..|+.+|...+ .+++..|..
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            999865555566689999999999988777777788899999876543 346789999999999999876 569999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      +|.|++.........+.+.|.+|.+..++.++ ...++.+...+++.++.. ......+.+.|++|.|+....+...+++
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~  434 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR  434 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence            99999998888888899999999999999998 889999988888888764 4456788899999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864          388 KEAAWAISNATSGGTHEQIKYEHTF  412 (417)
Q Consensus       388 ~~a~~~L~nl~~~~~~~~~~~l~~~  412 (417)
                      -+|+.+|.|++.  +.++...+++.
T Consensus       435 gNaAaAL~Nlss--~v~~YarviEa  457 (550)
T KOG4224|consen  435 GNAAAALINLSS--DVEHYARVIEA  457 (550)
T ss_pred             ccHHHHHHhhhh--hhHHHHHHHHH
Confidence            999999999988  45666666653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.91  E-value=3.9e-21  Score=184.82  Aligned_cols=325  Identities=18%  Similarity=0.193  Sum_probs=269.2

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.|++.|.+++.++...++..|.++...  .++...|.+.|+++.|+.++.+++ .+++..++++|.|++.+ ++.+
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence            6789999999999999999999999998544  577888999999999999999988 89999999999999996 8889


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+.. +|..+...++++.+++++...+++.+...+++.+.|++..
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999864  456779999999998765 8899999999999999987777888888899999999998


Q ss_pred             CCCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHH
Q 014864          233 KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~  310 (417)
                      +.........++++.|+...-. .|+-    .+..+.|++.+++.....+.  +++..|+..+... +++....++.+|+
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa  516 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA  516 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence            7666555556788888876543 3433    34688999988754444333  3677788887765 5789999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIK  387 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~  387 (417)
                      |+...+......+.+.+++|.+.++|..+. .+++.-+++.++|.++. ++.....+.+.|+++.|+++|..  .|.++.
T Consensus       517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V  595 (708)
T PF05804_consen  517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV  595 (708)
T ss_pred             hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence            999876666665667899999999997652 45789999999999986 46777788899999999999975  478999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHhcC
Q 014864          388 KEAAWAISNATSGGTHEQIKYEHTFC  413 (417)
Q Consensus       388 ~~a~~~L~nl~~~~~~~~~~~l~~~g  413 (417)
                      .+.++++..+..+.  +.+..+++..
T Consensus       596 lQil~~f~~ll~h~--~tr~~ll~~~  619 (708)
T PF05804_consen  596 LQILYVFYQLLFHE--ETREVLLKET  619 (708)
T ss_pred             HHHHHHHHHHHcCh--HHHHHHHhcc
Confidence            99999999999974  4455665543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=4.4e-20  Score=177.66  Aligned_cols=321  Identities=18%  Similarity=0.150  Sum_probs=257.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  155 (417)
                      .++-..+... ..+...|+..|.+++..  ......+.+.|+++.|+.+|++++ .++...++.+|.+++.. .+++..+
T Consensus       253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEM  327 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            3344444443 44556788889998753  455566899999999999999988 89999999999999986 7899999


Q ss_pred             HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (417)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~  235 (417)
                      .+.|+++.|++++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.++.   ++..+..++.+|++++..+..
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhh
Confidence            999999999999999999999999999999998876 7999999999999999994   234667799999999998765


Q ss_pred             CChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      .......+++|.+++++.+ +++.+...+++.+.|++.... ..+.+.+.++++.|+........   ...+..+.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            5555667899999987644 567777788999999987664 55788888899999988655432   234568888888


Q ss_pred             CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHH
Q 014864          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAW  392 (417)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~  392 (417)
                      +++.....+.  +++..|..++..+.+++...++..+|+|++..+.+..+.+.+.+++|.|.+.|..+  +.++..+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7754333232  47778888888876889999999999999976555555666789999999999754  5689999999


Q ss_pred             HHHHhhCCCCHHHHHHHHhcC
Q 014864          393 AISNATSGGTHEQIKYEHTFC  413 (417)
Q Consensus       393 ~L~nl~~~~~~~~~~~l~~~g  413 (417)
                      .++.++.  +++....+.+.|
T Consensus       558 ~~gtla~--d~~~A~lL~~sg  576 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSG  576 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCC
Confidence            9999987  667777776655

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.2e-17  Score=155.19  Aligned_cols=334  Identities=21%  Similarity=0.287  Sum_probs=265.3

Q ss_pred             CHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      .+.+|++.|... |+..|.+|+..++.+++....+....+--.-++|.|+.+|++..+.++...|+++|++++..-|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            457888888875 9999999999999998876444444444555799999999998889999999999999999989999


Q ss_pred             HHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ..+++.++||.|+.-|.. ...++.++++.+|-.|+...+   ..++..|++...+..+ +--...+++.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999986654 778899999999999998877   4678999999999998 77788999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHhhcCCCC----hhhHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPS----PSVLIP  304 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~~l~~~~----~~v~~~  304 (417)
                      .-+...+..+...+|.|..+|...|.+..+.+|-++.+++++   .++..+.+...|.+....+++.-..    ..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            888888888899999999999999999999999999999764   5677788899999999999987543    355677


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-------------chhHHHHHHHH--------------------
Q 014864          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------------KKSIKKEACWT--------------------  351 (417)
Q Consensus       305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------------~~~v~~~a~~~--------------------  351 (417)
                      .++.+.-++++++-....++..++...+..+|....             .|.-..+....                    
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            888888888888877766777777777776664321             01000000000                    


Q ss_pred             ----------------------------HHHHhc--------------------------CCHHHHHHHHHCCCHHHHHH
Q 014864          352 ----------------------------VSNITA--------------------------GNREQIQAVIEANIIGPLVA  377 (417)
Q Consensus       352 ----------------------------L~nl~~--------------------------~~~~~~~~l~~~~~i~~L~~  377 (417)
                                                  .+.+..                          ..|+-.+.++. .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                        001110                          11222333332 57899999


Q ss_pred             Hhcc-CCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864          378 LLEN-AEFDIKKEAAWAISNATSGGTHEQIKYEHTF  412 (417)
Q Consensus       378 ~l~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~  412 (417)
                      +..+ .++.||..++.+|..++...+.+.+..++.+
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~  598 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKN  598 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhc
Confidence            9875 4899999999999999999999999888765

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.80  E-value=9.3e-18  Score=158.07  Aligned_cols=337  Identities=20%  Similarity=0.236  Sum_probs=255.6

Q ss_pred             hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      +...+++.+.+|.+.++.+|-.|+..+..+..++ +.....+.+.|.|+.||.+|.+.. .+++.+|+++|.|+..++..
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~  308 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKST  308 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCC
Confidence            3357899999999999999999999998886554 666667889999999999999999 99999999999999998765


Q ss_pred             --hHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-CC------------C
Q 014864          151 --HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQ------------P  214 (417)
Q Consensus       151 --~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~------------~  214 (417)
                        ++-.+.+.++|+.++.+|.. .|.++++....+|+||++.+. ++..++.. .+..|...+. ..            .
T Consensus       309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~  386 (717)
T KOG1048|consen  309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAE  386 (717)
T ss_pred             cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHH-HHHHHHHhhcccccccCCCCcccccc
Confidence              88889999999999999996 899999999999999998844 55555544 5666655442 11            1


Q ss_pred             chhHHHHHHHHHhhhhcCCCC--CChhhhhchHHHHHHhhcC------CChHHHHHHHHHHHHhccCChH-----HH---
Q 014864          215 KLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTND-----KI---  278 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~-----~~---  278 (417)
                      +.++..+++.+|.|++.....  ...-...|.+..|+..+++      .|..-.++++..+.||+..-..     ..   
T Consensus       387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~  466 (717)
T KOG1048|consen  387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL  466 (717)
T ss_pred             cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence            367889999999999985421  2223346778887777652      3566677888888888643220     00   


Q ss_pred             -----------------------HH----------------------HHHcCChHHHHhhcC-CCChhhHHHHHHHHHHh
Q 014864          279 -----------------------QA----------------------VIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNI  312 (417)
Q Consensus       279 -----------------------~~----------------------~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l  312 (417)
                                             ..                      +....++..-..+|. +.++.+.+.++.+|-|+
T Consensus       467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNl  546 (717)
T KOG1048|consen  467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNL  546 (717)
T ss_pred             hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhh
Confidence                                   00                      000011122122222 34567789999999999


Q ss_pred             hcCChH----HHHHH-HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-----
Q 014864          313 VTGDDM----QTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-----  382 (417)
Q Consensus       313 ~~~~~~----~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-----  382 (417)
                      +.+...    ....+ .++.++|.|+++|+.. +..+.+.++.+|.|++.+ . ..+.++..++++.|++.|.+.     
T Consensus       547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~-rnk~ligk~a~~~lv~~Lp~~~~~~~  623 (717)
T KOG1048|consen  547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-I-RNKELIGKYAIPDLVRCLPGSGPSTS  623 (717)
T ss_pred             hccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-c-hhhhhhhcchHHHHHHhCcCCCCCcC
Confidence            987752    23333 5789999999999999 999999999999999985 2 234556678999999999754     


Q ss_pred             -CHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          383 -EFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       383 -~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                       +.++...+|.+|.|++.. +....+.+.+.+|+
T Consensus       624 ~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~  656 (717)
T KOG1048|consen  624 LSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGI  656 (717)
T ss_pred             chHHHHHHHHHhHHHHHHH-hHHHHHHHHhccCh
Confidence             368999999999999976 77888899988886

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=2.8e-15  Score=143.10  Aligned_cols=339  Identities=18%  Similarity=0.201  Sum_probs=255.2

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.++..+.++|..+...|+..|.++++.  .+..+.+++.+.++.|..++...+ +.+|..+..++.+++..+++..
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHH
Confidence            5678899999999999999999999999864  456667888899999999999877 7999999999999999999999


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-ch---h-HHHHHHHHHh
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KL---S-MLRNATWTLS  227 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~---~-~~~~a~~~l~  227 (417)
                      ..+.+.|+++.++..+.++|.-++..++.+|..++. .+...+.+.+.|+++.|..++.... |+   . ..-..+.++.
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            999999999999999999999999999999999999 5557888999999999999995443 22   1 3344556777


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc-C----ChHHHHhhcCCCChhhH
Q 014864          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-G----VFPRLAEFLMHPSPSVL  302 (417)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~----~~~~L~~~l~~~~~~v~  302 (417)
                      +++...|.........++..+..++.+.|+..+..|+.+++.++...++..-...+. +    ++..+.....+...+++
T Consensus       275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk  354 (503)
T PF10508_consen  275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK  354 (503)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence            888764444444445666777788888999999999999999986665543321333 2    34555555666778899


Q ss_pred             HHHHHHHHHhhcCChH-HH-------HHH---HHcCChH-HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HC
Q 014864          303 IPALRTVGNIVTGDDM-QT-------QCV---IEYQALP-CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EA  369 (417)
Q Consensus       303 ~~a~~~L~~l~~~~~~-~~-------~~~---~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~  369 (417)
                      ..++.+++++...... ..       ...   +..+-.. .+..+++.+ -+++|..+..+|..++.... ..+.+. ..
T Consensus       355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~W-g~~~i~~~~  432 (503)
T PF10508_consen  355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQPW-GQREICSSP  432 (503)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCHH-HHHHHHhCc
Confidence            9999999999543332 11       111   1234444 788889888 89999999999999998744 444455 56


Q ss_pred             CCHHHHHHHhccCCH---HHHHHHHHHHHHhhC-----CCCHH---HHHHHHhcCccCC
Q 014864          370 NIIGPLVALLENAEF---DIKKEAAWAISNATS-----GGTHE---QIKYEHTFCTIFI  417 (417)
Q Consensus       370 ~~i~~L~~~l~~~~~---~v~~~a~~~L~nl~~-----~~~~~---~~~~l~~~g~i~~  417 (417)
                      |+++.|++--.+.+.   +.|...+.+|.+...     .++++   .++..++.|.+|+
T Consensus       433 gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~~~~~~~~~~~~~~kL~~yv~eGpy~v  491 (503)
T PF10508_consen  433 GFIEYLLDRSTETTKEGKEAKYDIIKALAKSSTNASSVFDDPEYLGKLQEYVREGPYYV  491 (503)
T ss_pred             cHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcCCCHHHHHHHHHHHHcCCccc
Confidence            777776665443332   455666666663322     12444   4488889999885

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=2.7e-15  Score=143.21  Aligned_cols=334  Identities=17%  Similarity=0.190  Sum_probs=257.7

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ..+.+...|.++++.++..+++.+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~  154 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE  154 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence            4577788889999999999999999987543 444666778999999999999999 89999999999999986 56667


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .+++.+.++.|..++..+++.++-.+..++.+++..++.....+...|+++.++..+ +++|.-++.+++.++..|+..+
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~  233 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP  233 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence            788888899999999988889999999999999999999999999999999999999 6689999999999999999966


Q ss_pred             CCCChhhhhchHHHHHHhhcCC--Ch---H-HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864          234 PQPPFDQVSPALPALAHLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~--~~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~  307 (417)
                      .........++++.|..++...  |+   . .....+...++++...+..+-... ..++..+..++.+.++..+..|+.
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d  312 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD  312 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence            5555566689999999999654  33   1 223344667777764433322222 236677788888999999999999


Q ss_pred             HHHHhhcCChHHHHHH-HHc-----CChHHHHHhhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHH----H---HCC
Q 014864          308 TVGNIVTGDDMQTQCV-IEY-----QALPCLLNLLSGNYKKSIKKEACWTVSNITAG----NREQIQAV----I---EAN  370 (417)
Q Consensus       308 ~L~~l~~~~~~~~~~~-~~~-----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l----~---~~~  370 (417)
                      ++|.+++..+. ...+ ...     .++..+.....++ ..++|..+..+++++...    ..+.+..+    +   ..+
T Consensus       313 tlg~igst~~G-~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~  390 (503)
T PF10508_consen  313 TLGQIGSTVEG-KQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS  390 (503)
T ss_pred             HHHHHhCCHHH-HHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence            99999965543 3333 322     2345555556666 778999999999999542    12222111    1   234


Q ss_pred             CHH-HHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCccC
Q 014864          371 IIG-PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIF  416 (417)
Q Consensus       371 ~i~-~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i~  416 (417)
                      -.. .++.+++.+=+++|..+...|..++.+.  -.+..++...|++
T Consensus       391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~--Wg~~~i~~~~gfi  435 (503)
T PF10508_consen  391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQP--WGQREICSSPGFI  435 (503)
T ss_pred             chHHHHHHHhcCCchHHHHHHHHHHHHHhcCH--HHHHHHHhCccHH
Confidence            445 7788888777999999999999999863  4456677777653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.9e-15  Score=128.43  Aligned_cols=310  Identities=13%  Similarity=0.136  Sum_probs=248.5

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (417)
                      +++...-..++.+|..+..+.     ..+.+..++..++.+|.... +.++....+.++..-|.....+++.+++.++.+
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            456666667777766664332     22456677888888887432 367888888888888888889999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          163 IFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       163 ~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      .+...|.. +...+...+.|++.-+..+++         +....+...|++..|+..+.-..++.+...++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99977764 445678889999999886643         34466788888999999997677899999999999999987


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCC-hH---HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC--CCChhhHHHHH
Q 014864          233 KPQPPFDQVSPALPALAHLIHSND-DE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPAL  306 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~-~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~  306 (417)
                      +.........|++..|++++.+.+ ..   ....++..|..|+ ++++....+++.|+.+.++.++.  +++|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            666666677899999999998743 33   4466778888887 55566778999999999999875  45789999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHH
Q 014864          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD  385 (417)
Q Consensus       307 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~  385 (417)
                      .+++-++-..++....+++.|+-...+..++.. ....++++|||.+.|++..+.++...++. ..++.|+......++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~t  430 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHET  430 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCcc
Confidence            999999999998888899999999988888754 35689999999999999988888877776 5678888888888889


Q ss_pred             HHHHHHHHHHHhhCC
Q 014864          386 IKKEAAWAISNATSG  400 (417)
Q Consensus       386 v~~~a~~~L~nl~~~  400 (417)
                      +...|..+|..+-..
T Consensus       431 ce~~akaALRDLGc~  445 (461)
T KOG4199|consen  431 CEAAAKAALRDLGCD  445 (461)
T ss_pred             HHHHHHHHHHhcCcc
Confidence            999999999888664

>PRK09687 putative lyase; Provisional

Probab=99.73  E-value=1.7e-15  Score=132.92  Aligned_cols=254  Identities=16%  Similarity=0.109  Sum_probs=200.2

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.|++.|.+++..++..|+..|..+-.            ..+++.+..++.+++ +.+|..++++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            46889999999999999999999987631            124777888888888 99999999999998653211   


Q ss_pred             HHHhCCChhHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       154 ~i~~~g~i~~L~~l-l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                         ...+++.|..+ ++++++.|+..++.+|++++......     ...++..+...+ .++++.++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11356777776 67889999999999999996543311     111344555666 67789999999999976542 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                               ...++.|+.++.++++.|+..++.+|+.+...++.         +++.|+..+.+.++.++..|+++||.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     35789999999999999999999999998433332         467799999999999999999999996


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc-cCCHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA  391 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~  391 (417)
                      -.  +         .++|.|++.++++ +  ++..++.+|+++..  +         ..+|.|..++. ++|..++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence            42  2         3588999999976 4  78899999999854  3         36888999996 78999999999


Q ss_pred             HHHHH
Q 014864          392 WAISN  396 (417)
Q Consensus       392 ~~L~n  396 (417)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            99853

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1e-14  Score=124.10  Aligned_cols=292  Identities=16%  Similarity=0.157  Sum_probs=232.3

Q ss_pred             HhCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 014864          114 RSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG  188 (417)
Q Consensus       114 ~~g~i~~Lv~lL---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~  188 (417)
                      ..|..+.++..+   .+++ ..+...++.+|..+..+.|.    +.+..+...++.+|..  ++.++....+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            445555544433   3445 78889999999999887665    4567788899998864  677888888888888888


Q ss_pred             CCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-Ch---------hhhhchHHHHHHhhcCC-Ch
Q 014864          189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PF---------DQVSPALPALAHLIHSN-DD  257 (417)
Q Consensus       189 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-~~---------~~~~~~l~~L~~ll~~~-~~  257 (417)
                      ..+.+|+.+++.++++.+.+.+.......+.+.++|++..|..++... .+         ..-.+++..|++.+.-. ||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988877777789999999999998876221 11         11245677888888654 79


Q ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-hh---hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 014864          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PS---VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (417)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  333 (417)
                      .+....+.+|..|+-.+ +..+.+.+.|++..|+.++.+.+ ..   ....++..|..++ |+++....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence            99999999999998654 56677999999999999998743 33   3456777777776 5666777789999999998


Q ss_pred             Hhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864          334 NLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       334 ~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      .++. +..+|.|..+++-+++-++-.+|++-..+++.|+-...++.|+..+  ..++++|||.+.|++.. +.++...++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            8864 3348899999999999999989999999999999999999998653  58999999999999998 456666666


Q ss_pred             hcC
Q 014864          411 TFC  413 (417)
Q Consensus       411 ~~g  413 (417)
                      .+|
T Consensus       414 ~~G  416 (461)
T KOG4199|consen  414 ANG  416 (461)
T ss_pred             hcc
Confidence            655

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.69  E-value=2e-15  Score=142.54  Aligned_cols=282  Identities=21%  Similarity=0.219  Sum_probs=221.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--HHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRD  195 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~~  195 (417)
                      +|..+.+|.+.+ +.+|-.|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+++|.||..+...  .+-
T Consensus       235 lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            788899999988 89999999999999999999999999999999999999999999999999999999976554  778


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC--------------ChHHHH
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--------------DDEVLT  261 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--------------~~~v~~  261 (417)
                      .+.+.++++.+++++....|.++++.+..+|+||+..+ ......+...++.|..-+-.+              +.++..
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence            88999999999999977789999999999999999983 334445566777766544211              356888


Q ss_pred             HHHHHHHHhccCChHHHHHHHH-cCChHHHHhhcCC------CChhhHHHHHHHHHHhhcCChH----------------
Q 014864          262 DACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDM----------------  318 (417)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~-~~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~----------------  318 (417)
                      ++..||.|++....+..+.+.+ .|.+..|+..+++      .+.+...+++.++.|+...-..                
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence            9999999999877666666655 4889999888762      3455667777777777642220                


Q ss_pred             ---------------HHHH----------------------HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864          319 ---------------QTQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (417)
Q Consensus       319 ---------------~~~~----------------------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (417)
                                     ....                      +....++..-..++....++.+.+.++.+|-|++++...
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                           0000                      111233444445555444788999999999999986432


Q ss_pred             ----HHHHH-HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          362 ----QIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       362 ----~~~~l-~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                          ....+ ....+++.|+++|..++.++.+.++.+|.|++...
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~  597 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI  597 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence                22333 46789999999999999999999999999999864

>PRK09687 putative lyase; Provisional

Probab=99.68  E-value=1.1e-14  Score=127.67  Aligned_cols=228  Identities=12%  Similarity=0.079  Sum_probs=181.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      -++.|..+|.+.+ ..++..|+++|..+...           .+++.+..++.++++.++..++++|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            3788999999988 89999999999987642           4677888899999999999999999998543221    


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                        ....++.|..++..++++.++..++.+|++++...+..    ....++.+...+.++++.|+..++++|+.+.  ++ 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH-
Confidence              11246677777668889999999999999997653222    1235666777788889999999999998764  21 


Q ss_pred             HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       277 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                              ..++.|+.+|.++++.++..|+.+||.+..+++         ..++.|+..+.+. ++.||..|+++|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    157889999999999999999999999954443         2466789999988 9999999999999963


Q ss_pred             cCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .  +         .++|.|++.|.+++  ++..|+.+|+++-..
T Consensus       221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK  251 (280)
T ss_pred             C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence            2  3         46889999998766  678899999998653

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.67  E-value=5.3e-15  Score=129.68  Aligned_cols=312  Identities=14%  Similarity=0.099  Sum_probs=226.3

Q ss_pred             CChHHHHHHHHHHHHhhhCC--CCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864           85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (417)
                      .+..+...+..++.+....+  ++.....-+..+++..|.+..++++ .++..+..++|+|+|.++.+.+..+.+.|+-.
T Consensus        54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            34455666666666664322  1222333467788899999999987 89999999999999999999999999999988


Q ss_pred             HHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCC
Q 014864          163 IFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       163 ~L~~ll~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .++.+|+.       .+.+....+...|.|..-++.+.+..+++.|+++.|...+. ..++....+.....+.|+..-..
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            88887764       23567778889999999999999999999999999998873 23455555555554444443221


Q ss_pred             --CCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CC-------hhhHH
Q 014864          235 --QPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-------PSVLI  303 (417)
Q Consensus       235 --~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~-------~~v~~  303 (417)
                        ..++.........+++++.+. .+++.+-+...+.+.++++.-. -.+.+.|.+..++.+++. ++       .....
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence              122222234444566666443 5667777788888888766543 346778899999988875 21       12334


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-
Q 014864          304 PALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-  381 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-  381 (417)
                      .++....-+..|++... .+...+ +++.+..++.+. +....-.+..+++|+++.+. ...++++.+++..|++++.. 
T Consensus       292 ~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~  368 (604)
T KOG4500|consen  292 RIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQE  368 (604)
T ss_pred             hhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence            45555555666666543 355544 899999999999 99999999999999998755 55577788999999999853 


Q ss_pred             ----CCHHHHHHHHHHHHHhhCCC
Q 014864          382 ----AEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       382 ----~~~~v~~~a~~~L~nl~~~~  401 (417)
                          ++.+++..++.+|.|++.-.
T Consensus       369 ~~vdgnV~~qhA~lsALRnl~IPv  392 (604)
T KOG4500|consen  369 KDVDGNVERQHACLSALRNLMIPV  392 (604)
T ss_pred             cCCCccchhHHHHHHHHHhccccC
Confidence                57899999999999998864

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=2.9e-14  Score=140.93  Aligned_cols=336  Identities=19%  Similarity=0.171  Sum_probs=247.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhCCCch
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      ++...++.++...|.   ..-.+.|..+.+.  ....-.+...|.+|.|+++|.-++  ..+.+..|-.+|.||....++
T Consensus       197 ets~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD  271 (2195)
T KOG2122|consen  197 ETSNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD  271 (2195)
T ss_pred             hhhhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence            344566666666665   3444555555332  344556889999999999997554  367899999999999997776


Q ss_pred             hHHHHHhCCChhHHH----------HhhCC-----CCHHHHH---HHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-
Q 014864          151 HTKVVIDHGAVPIFV----------KLLYS-----PSDDVRE---QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-  211 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~----------~ll~~-----~~~~i~~---~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-  211 (417)
                      ....=.+.-++..|-          .++..     .+..+..   .|+.+|..++.+ ++.|..+-+.|++..+-.++. 
T Consensus       272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~v  350 (2195)
T KOG2122|consen  272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQV  350 (2195)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHH
Confidence            544333322222221          12221     1222222   455666666554 558999999999999988773 


Q ss_pred             ----------CCCchhHHHHHHHHHhhhhcCCCC--CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH-H
Q 014864          212 ----------GQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-I  278 (417)
Q Consensus       212 ----------~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-~  278 (417)
                                +.....+++++..+|.||..++..  .......+++.+++..|.+..+++..-.+..|.||+...+.. .
T Consensus       351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK  430 (2195)
T KOG2122|consen  351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK  430 (2195)
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence                      112456899999999999998733  334555899999999999888888888899999999766544 3


Q ss_pred             HHHHHcCChHHHHhh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCC---chhHHHHHHHHHH
Q 014864          279 QAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNY---KKSIKKEACWTVS  353 (417)
Q Consensus       279 ~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~---~~~v~~~a~~~L~  353 (417)
                      ..+.+.|-+..|+.+ |...........+.+|.||+.++.++...+.. .|.+.+|+.+|....   .-.+.+.|..+|.
T Consensus       431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR  510 (2195)
T KOG2122|consen  431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR  510 (2195)
T ss_pred             HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence            445556777777766 44555677888999999999888777666654 499999999997652   4577888888998


Q ss_pred             HHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          354 NITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       354 nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      |+..   .+.++++.+.+.+++..|+..|++....+..++|.+|+||... +++..++|.+.|.+
T Consensus       511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv  574 (2195)
T KOG2122|consen  511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAV  574 (2195)
T ss_pred             HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccH
Confidence            8875   5778888899999999999999999999999999999999988 66777888887754

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=5.1e-15  Score=146.16  Aligned_cols=266  Identities=19%  Similarity=0.175  Sum_probs=223.9

Q ss_pred             HHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHhCCCchhHHHHHh-CC
Q 014864           92 ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVID-HG  159 (417)
Q Consensus        92 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g  159 (417)
                      .|+..|-++ +.+ .++...|.+.|++..+-+++.-+.           +-.++..|..+|+||..|+..++..+.. .|
T Consensus       317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            567777776 443 788999999999999988876321           2468999999999999998777766654 49


Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhh-CCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC--CCC
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQP  236 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~--~~~  236 (417)
                      ++..++..|.+..+++....+.+|.||+ .-+...++.+-+.|.+..|.........+..+..++.+||||+.+.  ...
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            9999999999988899999999999998 4444577888899999999998878888889999999999999876  334


Q ss_pred             ChhhhhchHHHHHHhhcCC----ChHHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          237 PFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                      .+..+.|++..|+.+|...    --.+++.+-.+|.|++.   ..+...+.+.+..++..|++.|++.+..+..++|.+|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            5666799999999999654    24567777777777643   3455667888999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (417)
Q Consensus       310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (417)
                      .||...+++..+++++.|.++.|..++.+. +..+-.-++.+|.|+....|
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence            999999999999999999999999999999 99999999999999987654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=5.7e-15  Score=135.84  Aligned_cols=322  Identities=18%  Similarity=0.198  Sum_probs=217.4

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCC--------CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER--------SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNI  144 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~--------~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l  144 (417)
                      +.+|.|.+.|.++|...+.-|..+|.++.....        +.+...     .+|.++++.++++ +.+|..|+.|+..+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~-----mipkfl~f~~h~s-pkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNI-----MIPKFLQFFKHPS-PKIRSHAVGCVNQF  201 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHH-----hHHHHHHHHhCCC-hhHHHHHHhhhhhe
Confidence            457888899999999999999999999864420        122222     4899999999998 99999999999888


Q ss_pred             hCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864          145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW  224 (417)
Q Consensus       145 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~  224 (417)
                      .-..+.....-++ ..++.+..+-.+.+++++.+.+.++.-+....+.- -.---.++++.+++.. ++.|+.+.-.||.
T Consensus       202 i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t-qd~dE~VALEACE  278 (885)
T KOG2023|consen  202 IIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT-QDVDENVALEACE  278 (885)
T ss_pred             eecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc-cCcchhHHHHHHH
Confidence            7654444333333 46777888888899999999999999998665531 1111123566777776 7788889999999


Q ss_pred             HHhhhhcCCCCCChh----hhhchHHHHHHhhcCCChH--HHH-------------------------------------
Q 014864          225 TLSNFCRGKPQPPFD----QVSPALPALAHLIHSNDDE--VLT-------------------------------------  261 (417)
Q Consensus       225 ~l~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~--v~~-------------------------------------  261 (417)
                      ++..++..+  ....    .....+|.|+.-+..++.+  +..                                     
T Consensus       279 Fwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdd  356 (885)
T KOG2023|consen  279 FWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDD  356 (885)
T ss_pred             HHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccc
Confidence            999999885  2222    3355666665533211100  000                                     


Q ss_pred             ---------HHHHHHHHhccCChHHHHHHHHcC----ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864          262 ---------DACWALSYLSDGTNDKIQAVIEAG----VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (417)
Q Consensus       262 ---------~a~~~l~~l~~~~~~~~~~~~~~~----~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  328 (417)
                               ..-|-|..++...-+...-+....    ++|.|-..|.++++.+++.++.++|.++.|.-...-.- -..+
T Consensus       357 dDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeL  435 (885)
T KOG2023|consen  357 DDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPEL  435 (885)
T ss_pred             ccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHH
Confidence                     001222222221111112222233    34555555678889999999999999998775332111 1247


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      +|.++.+|.+. .+-||.-+||+|+..+.-  +.+.-+++.  .++..|++.+-+++.+|++.||.++..+-..+..+.+
T Consensus       436 ip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV  512 (885)
T KOG2023|consen  436 IPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV  512 (885)
T ss_pred             HHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH
Confidence            89999999999 999999999999999751  111112222  2455566666678999999999999999888877666


Q ss_pred             HHH
Q 014864          407 KYE  409 (417)
Q Consensus       407 ~~l  409 (417)
                      +++
T Consensus       513 p~l  515 (885)
T KOG2023|consen  513 PYL  515 (885)
T ss_pred             HHH
Confidence            654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=4e-13  Score=131.65  Aligned_cols=327  Identities=18%  Similarity=0.199  Sum_probs=235.1

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc---hh
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---EH  151 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~---~~  151 (417)
                      ++-+.+..+|+++..|..|+..|..+...-.+.....+  ..+.+.|.+.+.+++ ..++..|+++++.++...+   ..
T Consensus       120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s-~~vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPS-SPVRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHhccchHH
Confidence            34444455789999999999999988654322222111  124777888888888 4599999999999887543   33


Q ss_pred             HHHHHhCCChhHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC-CCchhHHHHHHHHH
Q 014864          152 TKVVIDHGAVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTL  226 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l  226 (417)
                      ...+.  ..+|.++..+.    .++......++.+|..++...+.+-...+.. ++...+.+... +-+..++..|+.++
T Consensus       197 ~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  197 VDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHH
Confidence            33333  35666666554    4667777888888888887766554443332 45555555532 23677777777777


Q ss_pred             hhhhcCCCCCC----------------------------------------------------------hhhhhchHHHH
Q 014864          227 SNFCRGKPQPP----------------------------------------------------------FDQVSPALPAL  248 (417)
Q Consensus       227 ~~l~~~~~~~~----------------------------------------------------------~~~~~~~l~~L  248 (417)
                      ..+++..|...                                                          .......++.+
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l  353 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEAL  353 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHH
Confidence            76665421000                                                          00012445566


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864          249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (417)
Q Consensus       249 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  328 (417)
                      -.++.+++..-+..++.+|+.++.+..+.....++. +++.+++.|.++++.||-.||.++|.+++.-....+.-....+
T Consensus       354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l  432 (1075)
T KOG2171|consen  354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERL  432 (1075)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence            677888999999999999999999988766554444 8888999999999999999999999999988877777778889


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHH-HHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIG-PLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~-~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      +|.|+..+.+..+++|+..|+.++.|+...++ +.+....+ +++. .+..++.++.+.++..++.+|+..+..+...++
T Consensus       433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~  511 (1075)
T KOG2171|consen  433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI  511 (1075)
T ss_pred             cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence            99999999998888999999999999998544 44444443 5666 444555678899999999999999988766666


Q ss_pred             HHH
Q 014864          407 KYE  409 (417)
Q Consensus       407 ~~l  409 (417)
                      +|+
T Consensus       512 pY~  514 (1075)
T KOG2171|consen  512 PYF  514 (1075)
T ss_pred             hHH
Confidence            664

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.63  E-value=1.1e-13  Score=118.53  Aligned_cols=196  Identities=18%  Similarity=0.228  Sum_probs=163.4

Q ss_pred             HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       113 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      .+.+-++.|+.+|+...+|.++..+..++++.+.. +.....+.+.|+++.+..++.++++.++..|+++|.|++.+.+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            45666899999999766599999999999998774 8889999999999999999999999999999999999998766 


Q ss_pred             HHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          193 CRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      .+..+-.  .++.++..+... -+..++..++.+|.+|+.....  ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            4444432  467777755343 4789999999999999876322  3344678999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHHHhhcC
Q 014864          272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG  315 (417)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~  315 (417)
                      .++. ....++.+.++..++.++... +.++...++..+.||..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            7665 456788888999999999876 578889999999999643

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.60  E-value=1.5e-13  Score=117.87  Aligned_cols=227  Identities=20%  Similarity=0.267  Sum_probs=177.5

Q ss_pred             HhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          156 IDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       156 ~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ +++++.++..|++++.|++...+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence            455778999999985 78999999999999987765 4899999999999999999 88999999999999999998754


Q ss_pred             CCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          235 QPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      +..  .+...++.+.+.+.+.  |..++..++.+|.+|+..++.  +.++. +.++.++.+|..++..++..++++|.|+
T Consensus        87 n~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            333  3355677777655443  788999999999999866543  23332 4689999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CH-----------HHHHHHH-HC-CCHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NR-----------EQIQAVI-EA-NIIGPLVA  377 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~-----------~~~~~l~-~~-~~i~~L~~  377 (417)
                      +...+ .+..++.++++..++.+++...+.++...+.+.+.||..+  .+           +....++ +. .+...|..
T Consensus       162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            97655 4556888899999999999876788899999999999642  11           1111222 22 25566666


Q ss_pred             HhccCCHHHHHHH
Q 014864          378 LLENAEFDIKKEA  390 (417)
Q Consensus       378 ~l~~~~~~v~~~a  390 (417)
                      +..++|++||..+
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            7777777777653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.60  E-value=5.1e-14  Score=108.62  Aligned_cols=118  Identities=34%  Similarity=0.505  Sum_probs=110.7

Q ss_pred             HHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (417)
Q Consensus       281 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (417)
                      +++.|+++.++.++.++++.++..++++|++++...+.....+.+.|+++.+..++.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56789999999999999999999999999999999888888889999999999999998 99999999999999999887


Q ss_pred             HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       361 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      .....+.+.|+++.|++++.+.+.+++..++|+|.|++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            778888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.59  E-value=1.1e-12  Score=134.21  Aligned_cols=244  Identities=19%  Similarity=0.211  Sum_probs=174.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.|++.|.++|+.++..|+..|..+..            .+.++.|+..|++++ +.++..|+.+|..+....     
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~-----  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL-----  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence            56788999999999999999999987631            235889999998888 899999999998885421     


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                           ...+.|...|.++++.++..++.+|+.+....            ...++..+ .++++.++..++.+|..+-.  
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence                 12356777888888899999988888764221            23456666 77788888888888876521  


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                                 .+.|..++.++++.|+..++.+|+.+.....         ..++.|..++.++++.+|..|+.+|+.+.
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG  803 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence                       1335666777788888888888877754321         12566777777777888888888887774


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHH
Q 014864          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (417)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~  393 (417)
                      ....          ..+.+...|.++ ++.||..|+++|+.+..  +         ..++.|+.+|.+++..||..|+++
T Consensus       804 ~~~~----------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A~~a  861 (897)
T PRK13800        804 CPPD----------DVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAAVLA  861 (897)
T ss_pred             Ccch----------hHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHHHHH
Confidence            3211          123466667776 77777777777776532  1         235677777777777777777777


Q ss_pred             HHHh
Q 014864          394 ISNA  397 (417)
Q Consensus       394 L~nl  397 (417)
                      |+.+
T Consensus       862 L~~~  865 (897)
T PRK13800        862 LTRW  865 (897)
T ss_pred             Hhcc
Confidence            7775

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.58  E-value=9.1e-14  Score=107.23  Aligned_cols=119  Identities=35%  Similarity=0.611  Sum_probs=111.1

Q ss_pred             HHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 014864          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (417)
Q Consensus       111 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  190 (417)
                      .+++.|+++.|++++.+++ +.++..++++|.+++.++++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999988 899999999999999998999999999999999999999999999999999999999988


Q ss_pred             chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       191 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+..+...|+++.+++++ ++.+..+++.++|++.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            87888889999999999999 67789999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.57  E-value=2.2e-12  Score=113.51  Aligned_cols=324  Identities=12%  Similarity=0.061  Sum_probs=247.6

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----D--YPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~--~~~~~~~a~~~L~~l~~  146 (417)
                      +.++.+.+...|+|.++-.++.++|.++.... ++.+..+.+.|+-..++..|+.-    +  +.+.-.-+...|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777888888999999999999998765 88899999999977777777642    1  24566667788999999


Q ss_pred             CCchhHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHH
Q 014864          147 GTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (417)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~  223 (417)
                      ++.+.+..+.+.|+++.|...+.  -.+....+.+....+|+.+- .+...+...+......+++++.....+++.+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            99999999999999999988775  36777788888877777643 2223455566677788999997777889999999


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhcC-CC-------hHHHHHHHHHHHHhccCChHHHHHHHHcC-ChHHHHhhc
Q 014864          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL  294 (417)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~~l  294 (417)
                      ..+...+..+.........|.+..+..+++. .+       -.....++....-+..+++.. +.+...+ +++.+..++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence            9999999887555555557778888888754 21       223334444444455566554 4455555 899999999


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 014864          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (417)
Q Consensus       295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (417)
                      .+++......+.-+|||+++.++..++ +++.+++..|+.++...    .+.+++..++.+|.|+.---+ +...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~ci~-~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDICIQ-LVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHHHH-HHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccc
Confidence            999999999999999999988776655 78889999999998642    156788899999999986322 345667889


Q ss_pred             CHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          371 IIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +.+.++..++...|.+...-...+.=+..+
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~  432 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS  432 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence            999999999988888877777776655443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.55  E-value=3.6e-12  Score=130.44  Aligned_cols=245  Identities=21%  Similarity=0.250  Sum_probs=195.7

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.|+..|.++++.++..|+..|..+....  +         ..+.|...|++++ +.++..|+.+|..+..+     
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~-----  714 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---------PAPALRDHLGSPD-PVVRAAALDVLRALRAG-----  714 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---------chHHHHHHhcCCC-HHHHHHHHHHHHhhccC-----
Confidence            45788999999999999999999998875321  1         1356778888887 89999999999987542     


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                             ....|+..|.++++.++..|+.+|+.+-              ..+.|+..+ .++++.++..++.+|..+...
T Consensus       715 -------~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~  772 (897)
T PRK13800        715 -------DAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAA-TDENREVRIAVAKGLATLGAG  772 (897)
T ss_pred             -------CHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHh-cCCCHHHHHHHHHHHHHhccc
Confidence                   2346778899999999999999999862              123456667 888999999999999998765


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .+        ..++.|..++.++|+.|+..++.+|+.+.....          +.+.+...|.++++.+|..|+.+|+.+
T Consensus       773 ~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~d~~VR~~Aa~aL~~l  834 (897)
T PRK13800        773 GA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRASAWQVRQGAARALAGA  834 (897)
T ss_pred             cc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            32        237788899999999999999999998853211          235588889999999999999999987


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                      ..  +         ..++.|..+|+++ ++.||..|+++|+.+ .+++.         ..+.|...+++.+.+||..|..
T Consensus       835 ~~--~---------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~---------a~~~L~~al~D~d~~Vr~~A~~  892 (897)
T PRK13800        835 AA--D---------VAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPA---------ARDALTTALTDSDADVRAYARR  892 (897)
T ss_pred             cc--c---------chHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHH---------HHHHHHHHHhCCCHHHHHHHHH
Confidence            52  1         2358899999999 999999999999997 33343         3567778899999999999999


Q ss_pred             HHHH
Q 014864          393 AISN  396 (417)
Q Consensus       393 ~L~n  396 (417)
                      +|..
T Consensus       893 aL~~  896 (897)
T PRK13800        893 ALAH  896 (897)
T ss_pred             HHhh
Confidence            9863

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=4.9e-12  Score=124.24  Aligned_cols=323  Identities=17%  Similarity=0.171  Sum_probs=223.8

Q ss_pred             HHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           76 PVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        76 ~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      ..++..+.+ ..+.++..-+..+..+++..-+..|..     +++.|.+..++++ +..|+.|+.+|..+...-......
T Consensus        82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~  155 (1075)
T KOG2171|consen   82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP  155 (1075)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence            455665555 557788888888888877653334544     4888999999999 899999999999998743332221


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh-cCCHHHHHHHhc---CCCchhHHHHHHHHHhhhh
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~  230 (417)
                      .+. ...+.|.+.+.+++..++..++.+++.++...+......-. ...+|.++..+.   +..|......+..+|..+.
T Consensus       156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~  234 (1075)
T KOG2171|consen  156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL  234 (1075)
T ss_pred             hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence            111 34566666777776669999999999998554322222211 124566666653   3456666778888888888


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHH-----------------------------
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-----------------------------  279 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~-----------------------------  279 (417)
                      ...|.........++........+.  ++.++..|+..+..++...+...+                             
T Consensus       235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            7765544444455555555555443  456666666655555433111100                             


Q ss_pred             ----------------HHHH------------cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 014864          280 ----------------AVIE------------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (417)
Q Consensus       280 ----------------~~~~------------~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  331 (417)
                                      ..++            .-+++.+-.++++.++.-|..++.+|+.++.|+.+.....+ ..+++.
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~  393 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI  393 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence                            0000            01234555667788889999999999999999998776533 378899


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864          332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIK  407 (417)
Q Consensus       332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~  407 (417)
                      ++..|+++ ++.||..||.+++.++..-...++.-...-+++.|+..+.+. +++++..|+.++.|+...+..+.+.
T Consensus       394 Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~  469 (1075)
T KOG2171|consen  394 VLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE  469 (1075)
T ss_pred             HHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence            99999999 999999999999999987666777777778888999999865 6799999999999999988765553

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.8e-11  Score=109.29  Aligned_cols=326  Identities=13%  Similarity=0.143  Sum_probs=240.3

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      -+..+++.|..++.++.......|.++...  .++...|.+.|++..|+.++...+ ++++..++..+.|++.+ ...+.
T Consensus       305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~  380 (791)
T KOG1222|consen  305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP  380 (791)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence            467889999988888888778888877443  577888999999999999999998 99999999999999986 77888


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .++..|.+|.+..++.+...  ...|+..+..++.++. ++..+....+++.+.+.+....+..+-...+....|+|...
T Consensus       381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            89999999999999986432  3457778888877765 78888888899998887767777777666666677777665


Q ss_pred             CCCChhhhhc-------------------------------------hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh
Q 014864          234 PQPPFDQVSP-------------------------------------ALPALAHLIHSN-DDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       234 ~~~~~~~~~~-------------------------------------~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~  275 (417)
                      .+.+......                                     .+..|...+..+ ++.....++.++++|.-.+-
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence            4333221111                                     122222223222 45567788888888876555


Q ss_pred             HHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTV  352 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L  352 (417)
                      +-...+-+...+|.+-..|...  ..++....+-.+|..+.... ....+..+++++.++++|+..+ +.++.....++.
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~-cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF  616 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD-CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF  616 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH-HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence            5556667778899998888754  34566677777777775443 3333556799999999998653 566777778888


Q ss_pred             HHHhcCCHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864          353 SNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYE  409 (417)
Q Consensus       353 ~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l  409 (417)
                      -.+..+ ......++ +...-..|++++++.+.++|+-+-.+|--++.+ +.+..+.+
T Consensus       617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~-d~EWAKrI  672 (791)
T KOG1222|consen  617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH-DKEWAKRI  672 (791)
T ss_pred             HHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence            888775 44455555 455666899999999999999999999888876 44544443

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.52  E-value=3.9e-15  Score=107.49  Aligned_cols=91  Identities=43%  Similarity=0.618  Sum_probs=60.2

Q ss_pred             CCCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCc-cC-CCCCc-hhhhccCHHHHHh
Q 014864            5 PNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA-ND-VNAPG-TAKKLENLPVMVA   80 (417)
Q Consensus         5 ~~~~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~-~~-~~~~~-~~~~~~~l~~l~~   80 (417)
                      .+...+.|++.||+ |+|++|+|+||++..++|||+||+|.|.|||++........+ .. ..... .......++.++.
T Consensus         2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~   81 (97)
T PF01749_consen    2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVA   81 (97)
T ss_dssp             -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHH
T ss_pred             CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHH
Confidence            34577899999999 699999999999999999999999999999998654333211 11 11111 1222246788999


Q ss_pred             hhcCCChHHHHHHHH
Q 014864           81 GVWSNDSGVQYECTT   95 (417)
Q Consensus        81 ~l~s~~~~~~~~a~~   95 (417)
                      .+.|+|+..|+.|..
T Consensus        82 ~v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   82 GVNSDDPEVQLEATQ   96 (97)
T ss_dssp             HHTSSCHHHHHHHHH
T ss_pred             hcCCCCHHHHHHhhC
Confidence            999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1.1e-12  Score=120.99  Aligned_cols=273  Identities=15%  Similarity=0.180  Sum_probs=197.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC----CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      ++|.|+++|.+++ ...+.-|..+|..++.++++..+.-...    -.+|.++.+.+++++.+|..|+.++..+.-..+.
T Consensus       129 lLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q  207 (885)
T KOG2023|consen  129 LLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ  207 (885)
T ss_pred             HHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence            5999999999998 6889999999999999877655442211    3579999999999999999999999988765543


Q ss_pred             HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      .-..-++. +++.+..+. .+.+++++++.|.++..|....|........++++.++...++.|++|.-.||.....++.
T Consensus       208 al~~~iD~-Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  208 ALYVHIDK-FLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHH-HHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            22222222 456666666 7889999999999999999987777667778889999998899999999999998888887


Q ss_pred             CChHHHHHHHHc---CChHHHHhhcCCC----------------------------------------------------
Q 014864          273 GTNDKIQAVIEA---GVFPRLAEFLMHP----------------------------------------------------  297 (417)
Q Consensus       273 ~~~~~~~~~~~~---~~~~~L~~~l~~~----------------------------------------------------  297 (417)
                      .+. . ..++..   .++|.|+.-+...                                                    
T Consensus       286 qpi-~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  286 QPI-C-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             CcC-c-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            652 1 122221   2444444333211                                                    


Q ss_pred             ----ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHCCCH
Q 014864          298 ----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEANII  372 (417)
Q Consensus       298 ----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i  372 (417)
                          ++.+|...+.+|.-++.--...   ++ .-++|.|-..|.+. ++.+|+.+..+||.|+.|+.+.. +.+  ..++
T Consensus       364 D~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L--peLi  436 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL--PELI  436 (885)
T ss_pred             cccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch--HHHH
Confidence                0344554444444443221111   11 12456666667777 99999999999999999754322 222  1478


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          373 GPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       373 ~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      |.|+.+|.+.-+-||.-.||+|+.++...
T Consensus       437 p~l~~~L~DKkplVRsITCWTLsRys~wv  465 (885)
T KOG2023|consen  437 PFLLSLLDDKKPLVRSITCWTLSRYSKWV  465 (885)
T ss_pred             HHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence            99999999999999999999999987764

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.49  E-value=7.3e-11  Score=107.89  Aligned_cols=322  Identities=12%  Similarity=0.083  Sum_probs=224.6

Q ss_pred             CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHh-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q 014864           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (417)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-----g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~  147 (417)
                      ....++..+.. ...++....+..+..++... +.....+.+.     +....++.+|..++ .-+...|+.+|+.+.+.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            34666777764 55677777888888887763 3334445543     56778888998887 78999999999999875


Q ss_pred             CchhHHHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-chhHHHHHHHH
Q 014864          148 TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT  225 (417)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~a~~~  225 (417)
                      ++.........-.++.|...+.++ +...+..|+.+|..+....+ +|..+.+.++++.|+.++.... +..++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            443211111111334455555543 46778888999999987776 8998989999999999996545 67899999999


Q ss_pred             HhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCC------hHHHHHHHHcCChHHHHhhcCCC-
Q 014864          226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMHP-  297 (417)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~~~~L~~~l~~~-  297 (417)
                      ++-|+...+........+.++.++.++... -+++..-++.++.|+...+      ......+++.|+.+ ++..|... 
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK  289 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence            999998765333334468999999999765 5778888899999998743      22345567777655 44444432 


Q ss_pred             --ChhhHHHHHHHHHHh--------hcC--------------Ch---------HHHHHHHH--cCChHHHHHhhcCCCch
Q 014864          298 --SPSVLIPALRTVGNI--------VTG--------------DD---------MQTQCVIE--YQALPCLLNLLSGNYKK  342 (417)
Q Consensus       298 --~~~v~~~a~~~L~~l--------~~~--------------~~---------~~~~~~~~--~~~l~~L~~ll~~~~~~  342 (417)
                        |+++.. .+..|...        ++.              ++         +....+-+  ..++..|+.+|..+.++
T Consensus       290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence              333321 11111111        110              01         11111222  25567899999655488


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .+..-||.=+|.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            8889999999999998787777777889999999999999999999999999887653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.46  E-value=5.2e-11  Score=110.41  Aligned_cols=338  Identities=15%  Similarity=0.198  Sum_probs=225.9

Q ss_pred             cCHHHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCC-CcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      ..++.++++|.+.| .......+++++.+++..+. +.........+++.+..+++.+. ......-+....+++. .+.
T Consensus        95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~~a~~s~-~~~  172 (678)
T KOG1293|consen   95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSRAAHLSS-TKD  172 (678)
T ss_pred             hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhhhccccc-cch
Confidence            46788899998888 78888899999999887522 22233445556777777776333 2333333444444444 467


Q ss_pred             hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHH---HhhCCCchHHH----HHHhcCCHHH-HHHHhcCCCchhHHHHH
Q 014864          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG---NIAGDSPRCRD----LVLSQGGLVP-LLAQLNGQPKLSMLRNA  222 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~---nl~~~~~~~~~----~~~~~g~i~~-L~~ll~~~~~~~~~~~a  222 (417)
                      +...+.+.|+.+.+.-++...+...+.+|+.++.   ++..+++....    .....|+.+. .+..+.++++...+-.+
T Consensus       173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s  252 (678)
T KOG1293|consen  173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS  252 (678)
T ss_pred             hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence            7777788888888888887778899999999999   77766664332    2334444442 34444466666666777


Q ss_pred             HHHHhhhhcCC----CCCCh----hh--------------------------------------------hhchHHHHHH
Q 014864          223 TWTLSNFCRGK----PQPPF----DQ--------------------------------------------VSPALPALAH  250 (417)
Q Consensus       223 ~~~l~~l~~~~----~~~~~----~~--------------------------------------------~~~~l~~L~~  250 (417)
                      +.++.++++..    +.+..    ..                                            ....++.+.+
T Consensus       253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e  332 (678)
T KOG1293|consen  253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE  332 (678)
T ss_pred             HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence            77777666544    00000    00                                            0001111111


Q ss_pred             hh----------------------------------------------------cCCChHHHHHHHHHHHHhccCChHHH
Q 014864          251 LI----------------------------------------------------HSNDDEVLTDACWALSYLSDGTNDKI  278 (417)
Q Consensus       251 ll----------------------------------------------------~~~~~~v~~~a~~~l~~l~~~~~~~~  278 (417)
                      ++                                                    ...|..+...+|-++-+++..-..-.
T Consensus       333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~  412 (678)
T KOG1293|consen  333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR  412 (678)
T ss_pred             HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            11                                                    11233344444444444432211111


Q ss_pred             HHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       279 ~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      ..+-..++...|++++..++..+...++.+|.|++.........++..|+++.+.+++.+. ++.+|..+.|+|.++..+
T Consensus       413 tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~  491 (678)
T KOG1293|consen  413 TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHLMFN  491 (678)
T ss_pred             cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhc
Confidence            1122236788999999999999999999999999988887888899999999999999999 999999999999999998


Q ss_pred             CHHHHHHHHHCCC-HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864          359 NREQIQAVIEANI-IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCT  414 (417)
Q Consensus       359 ~~~~~~~l~~~~~-i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~  414 (417)
                      +.+..+......+ ...+..+.+++++.|++.+...|.|++.. ..+.+.++++..+
T Consensus       492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~-~~~svdfll~~~~  547 (678)
T KOG1293|consen  492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN-SRKSVDFLLEKFK  547 (678)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC-cHHHHHHHHHhhh
Confidence            7776665554444 45566677889999999999999999987 4566777776543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.41  E-value=1.2e-10  Score=106.45  Aligned_cols=280  Identities=15%  Similarity=0.116  Sum_probs=203.3

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ....++..|.++|..++..|+..+..+++.. ..........-+++.|...++++++...+..++.+|..+... ++.+.
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~  179 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF  179 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence            4577788888899999999999999998753 222111111123456666776654467888899999999885 88888


Q ss_pred             HHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      .+.+.++++.|+.+|..  .+..++..++.+++-++.+.+ ........+.++.++.++..+..+.+.+-++.++.|+..
T Consensus       180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            89888999999999975  356899999999999997766 455666788999999999888899999999999999998


Q ss_pred             CCC----CC--ChhhhhchHHHHHHhhcC---CChHHHHHHHHHH-------HHhcc------------------C-Ch-
Q 014864          232 GKP----QP--PFDQVSPALPALAHLIHS---NDDEVLTDACWAL-------SYLSD------------------G-TN-  275 (417)
Q Consensus       232 ~~~----~~--~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l-------~~l~~------------------~-~~-  275 (417)
                      ...    ..  ....+...++.++..|..   .|+++..+.-..-       ..++.                  + ++ 
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            641    11  112234345555555543   3666544322211       11111                  0 00 


Q ss_pred             ---HHHHHHHHc--CChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHH
Q 014864          276 ---DKIQAVIEA--GVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC  349 (417)
Q Consensus       276 ---~~~~~~~~~--~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  349 (417)
                         ++...+-+.  .++..|+.+|. ++++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL  417 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL  417 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence               122233332  34678899985 56788888999999999999988777677789999999999999 999999999


Q ss_pred             HHHHHHhc
Q 014864          350 WTVSNITA  357 (417)
Q Consensus       350 ~~L~nl~~  357 (417)
                      .++..+..
T Consensus       418 ~avQklm~  425 (429)
T cd00256         418 LAVQKLMV  425 (429)
T ss_pred             HHHHHHHH
Confidence            99988754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=3.3e-11  Score=113.17  Aligned_cols=320  Identities=18%  Similarity=0.221  Sum_probs=216.4

Q ss_pred             cCHHHHHhhhc----CCCh-HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVW----SNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~----s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~  146 (417)
                      ..+|.++..|.    .+.+ .++..++.++..+...- .|..-.--.+.++..+++-.. ...+..+|..|+.+|.|-..
T Consensus       125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe  203 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE  203 (859)
T ss_pred             hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence            34566666554    3333 47788889988875432 333222224455666666444 33347899999999998665


Q ss_pred             CCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864          147 GTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (417)
Q Consensus       147 ~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (417)
                      ....+...-.+ +-++...+..-.+++.+++..|..+|..|..-.-++-..-+....+..-+.-+ .+++.++.-.+...
T Consensus       204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF  282 (859)
T KOG1241|consen  204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF  282 (859)
T ss_pred             HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence            32222111111 23445666667789999999999999999865444444444444455556666 68899999999999


Q ss_pred             HhhhhcCCC-------------CCC--h----hhhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHH
Q 014864          226 LSNFCRGKP-------------QPP--F----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQ  279 (417)
Q Consensus       226 l~~l~~~~~-------------~~~--~----~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~  279 (417)
                      ++++|...-             .++  .    .....++|.|+++|...       +......+-.||.-++....+   
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---  359 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---  359 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---
Confidence            999986421             111  1    12246788888888541       223444454555554433222   


Q ss_pred             HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (417)
                      .++. .++|.+-.-++++++.-+..|+.++|.+..+.+......+..+++|.++.++.++ .-.++..+.|+++.++...
T Consensus       360 ~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  360 DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence            1222 3677777788899999999999999999999998887788889999999999987 8899999999999999876


Q ss_pred             HHHHHHH-HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          360 REQIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       360 ~~~~~~l-~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ++.+..- .....++.++.-|. ++|++..++||++.+|+..
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA  478 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH
Confidence            6543222 23455666666665 4789999999999999844

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=6.5e-10  Score=99.59  Aligned_cols=304  Identities=16%  Similarity=0.118  Sum_probs=215.7

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHH
Q 014864           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (417)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  165 (417)
                      .+.+-..|+..|.+++..  -..-..|...+++..|+..|..++ .++...+...|..++-. .+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence            455666677888888643  233345889999999999999988 89999999999999875 77888899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (417)
Q Consensus       166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  245 (417)
                      +++...+++++...+..+.|++.++. .|..++..|.+|.+..++.++...   .-|+..++.++.++..........++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence            99999999999999999999998876 778888999999999999544433   34566677777765444444456777


Q ss_pred             HHHHHhhcC-CChHHHHHHHH--------------------------------------HHHHhccCChHHHHHHHHcCC
Q 014864          246 PALAHLIHS-NDDEVLTDACW--------------------------------------ALSYLSDGTNDKIQAVIEAGV  286 (417)
Q Consensus       246 ~~L~~ll~~-~~~~v~~~a~~--------------------------------------~l~~l~~~~~~~~~~~~~~~~  286 (417)
                      +.+.+.+-+ .+.+|-...+.                                      .+.+++.+.......+++  .
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y  505 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y  505 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence            776665432 23333222222                                      222233222222222222  2


Q ss_pred             hHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHH
Q 014864          287 FPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQ  364 (417)
Q Consensus       287 ~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~  364 (417)
                      +..|...++.. +......++.+++|+...+-...+.+.+.+++|.+-..|+.+. ..++.-....+++.++.. .....
T Consensus       506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~  584 (791)
T KOG1222|consen  506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR  584 (791)
T ss_pred             HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH
Confidence            44455555543 4567788999999998766666666677899999999998763 345677777777877664 34455


Q ss_pred             HHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhCC
Q 014864          365 AVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       365 ~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~~  400 (417)
                      .+..+++++.|+++|+.  .+.+.....++++..+..+
T Consensus       585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H  622 (791)
T KOG1222|consen  585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH  622 (791)
T ss_pred             HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            56678999999999974  3566777777777776664

>PTZ00429 beta-adaptin; Provisional

Probab=99.38  E-value=1.1e-09  Score=107.84  Aligned_cols=295  Identities=17%  Similarity=0.092  Sum_probs=206.7

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.+..+.+.|.+.+...+..|++.+....... .+.      +.+.+..+.++.+++ .+++.-+.-.+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            45677888888888888888887666554432 221      124677788888888 8999999999999988655542


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      -     -+++.|.+=+.++++.++..|+.+|++|-...  .-+.     .+.++.+.+ .+.++.+++.|+.++..+...
T Consensus       104 l-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 L-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             H-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            2     24677888888999999999999999984321  1121     456677777 788999999999999999886


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .|.  .....+.++.|..+|.+.|+.|..+|+.+|..+....+....  ...+.+..|+..+..-++-.+...+..|...
T Consensus       171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            553  223356788899999999999999999999999765544332  2344567788888766666777777777553


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAA  391 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~  391 (417)
                      .-.++...     ..++..+...|++. ++.|.-+|+.++.++... +++.+..+.. .+.+.|+.++ +.+++++.-++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHH
Confidence            32222221     24677788889998 899999999999998753 2333333221 2334455553 45566777776


Q ss_pred             HHHHHhhCC
Q 014864          392 WAISNATSG  400 (417)
Q Consensus       392 ~~L~nl~~~  400 (417)
                      ..|.-++..
T Consensus       319 r~I~~i~~~  327 (746)
T PTZ00429        319 KNIHALLVI  327 (746)
T ss_pred             HHHHHHHHH
Confidence            666555443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.37  E-value=3.5e-11  Score=117.61  Aligned_cols=293  Identities=20%  Similarity=0.187  Sum_probs=192.1

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ...+.+++.+.++|...+..+--.+..+....  +..-.+    ++..+.+=|.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            56788899989999988888888777775432  222222    3677777788888 8999999999999884  4444


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      .     ..++.+..++.++++.+|..|+.++..+....|..   +... .++.+.+++ .++++.++..|+.++..+ ..
T Consensus       113 ~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 E-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             H-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             h-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            3     34677888888999999999999999998665542   2222 477788888 778899999999999888 22


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .+..........++.|.+++...++..+..++..+..++.........   ..+++.+..++.+.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            211111334555666666667778888888888888887665544311   23556666666666677777777777666


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                      .....      .-..+++.+..++.++ ++.+|..++..|..++...+....     .....+..+..+++..+|..++.
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence            54333      1223466677777766 677777777777777664432221     11112222222556666666666


Q ss_pred             HHHHhhCC
Q 014864          393 AISNATSG  400 (417)
Q Consensus       393 ~L~nl~~~  400 (417)
                      .|.+++..
T Consensus       327 lL~~l~~~  334 (526)
T PF01602_consen  327 LLYKLANE  334 (526)
T ss_dssp             HHHHH--H
T ss_pred             HHhhcccc
Confidence            66666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.34  E-value=5.8e-09  Score=102.84  Aligned_cols=302  Identities=14%  Similarity=0.101  Sum_probs=208.7

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ..++.+++.+.++|...+....-.+.+.+...  +..-.+    +++.|.+=+++++ +.+|-.|+++|+++-.  ++..
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence            35788899999999999999988888876432  222222    3778888888888 9999999999998866  3333


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      .     -.++.+.+.+.+.++-|+..|+.++.++...+++   .+.+.|.++.|..++ .+.++.++.+|+.+|..++..
T Consensus       139 e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 E-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence            3     2456677888899999999999999999876663   445667888899988 889999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .|. ........+..++..+..-++..+...+.+|....-.++...     ..++..+...|++.++.|...|++++-++
T Consensus       210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            553 234446666677777766677788888888866432222221     24678888999999999999999999888


Q ss_pred             hcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH----H---------------------
Q 014864          313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA----V---------------------  366 (417)
Q Consensus       313 ~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~----l---------------------  366 (417)
                      ....+ .....+. ..+.+.++.++ ++ +++++..++..+.-++...|.....    +                     
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L  360 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL  360 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence            75432 2222111 11224455553 34 5667766666665554433321111    0                     


Q ss_pred             HH----CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          367 IE----ANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       367 ~~----~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .+    ..++..|.+...+.+.+++..++.++++++..-
T Consensus       361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~  399 (746)
T PTZ00429        361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV  399 (746)
T ss_pred             cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence            00    013445555566667888888999988888753

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.34  E-value=7.4e-10  Score=102.92  Aligned_cols=326  Identities=15%  Similarity=0.097  Sum_probs=211.7

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHH
Q 014864           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVI  156 (417)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~  156 (417)
                      ++..+...|++....|..-..+++.+. +++...+++.|.++.++.+++..+ .++.+.+.+.++.....++......+.
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL   92 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL   92 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence            344455667777788888888888876 555557999999999999998654 367777888888999998888899999


Q ss_pred             hCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHH--HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          157 DHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       157 ~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~--~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      +.+.++.|+.++.+++ ..+.+.++.++.++...++..-.  ......++..+..++ ..+.....+.-+...+++|...
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence            9999999999999988 88999999999999866542211  111222333333333 3344444555555556666554


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH---HhccCChHHHH----HHHHcCChHH--HHhhcCCCChhhH--
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVFPR--LAEFLMHPSPSVL--  302 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~---~l~~~~~~~~~----~~~~~~~~~~--L~~~l~~~~~~v~--  302 (417)
                      .........++...+.-++......++..++.+++   .+..+++....    ...+.|+.++  +..++++++...+  
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            22222233455555555555556666777777777   44444432221    1222233321  1122222221111  


Q ss_pred             --------------------------------------------------------------------------------
Q 014864          303 --------------------------------------------------------------------------------  302 (417)
Q Consensus       303 --------------------------------------------------------------------------------  302 (417)
                                                                                                      
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------HHHHHHHHHhhcCChHH
Q 014864          303 ---------------------------------------------------------------IPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       303 ---------------------------------------------------------------~~a~~~L~~l~~~~~~~  319 (417)
                                                                                     .+||-++-+++..-...
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                           11111111111100000


Q ss_pred             HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ...+-...+..++++++..+ +..|+..+..+++|+.-...+....++..|+|..+..++.+.++.+|..+.|+|.++..
T Consensus       412 ~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            00001235667889999888 88999999999999998656667788899999999999999999999999999999999


Q ss_pred             CCCHHHH
Q 014864          400 GGTHEQI  406 (417)
Q Consensus       400 ~~~~~~~  406 (417)
                      .++....
T Consensus       491 ~~de~~k  497 (678)
T KOG1293|consen  491 NCDEEEK  497 (678)
T ss_pred             cchHHHH
Confidence            8765443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.32  E-value=4.4e-10  Score=109.91  Aligned_cols=289  Identities=20%  Similarity=0.246  Sum_probs=216.6

Q ss_pred             HHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           77 VMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        77 ~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      ++.+.+.+.  +...+..++..+..+.... .+ .     ..+.+..+.++.+.+ ...+.-+.-.+..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~-~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YD-I-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CC-C-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            344444444  6777777777666654432 11 1     145888999999777 899999999999998876662222


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                           ++..+.+=|.++++.++..|+.++++++  .++....     .++.+.+++ .++++.+++.|+.++..+....|
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 4677888899999999999999999997  3322222     467788888 78889999999999999998754


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      ...  ... .++.+..++.++|+.+...|+.++..+ ..++.....++ ..+++.|..++...++-.+..+++.+..++.
T Consensus       147 ~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            321  112 689999999989999999999999998 33333211122 2356667777788899999999999999998


Q ss_pred             CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (417)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L  394 (417)
                      ..+.....   ..+++.+..++++. ++.|..+++.++..+....+      .-..+++.|..++.++++.++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            77755521   35678899999988 99999999999998876433      2225788999999999999999999999


Q ss_pred             HHhhCCC
Q 014864          395 SNATSGG  401 (417)
Q Consensus       395 ~nl~~~~  401 (417)
                      ..++...
T Consensus       292 ~~l~~~~  298 (526)
T PF01602_consen  292 SQLAQSN  298 (526)
T ss_dssp             HHHCCHC
T ss_pred             HHhhccc
Confidence            9998864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=3.7e-10  Score=106.31  Aligned_cols=325  Identities=19%  Similarity=0.190  Sum_probs=222.6

Q ss_pred             HHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           76 PVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        76 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ..++.....  ++..+++.|+.+|.+-+...+...-.+.-.+=+++..++.-+.++ .+++..|..||..|.+-..+...
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~  253 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFME  253 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444443  467889999999988765432222333334446777788888888 89999999999999986666666


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH---------------HH---HHhcCCHHHHHHHhcC-CC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR---------------DL---VLSQGGLVPLLAQLNG-QP  214 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~---------------~~---~~~~g~i~~L~~ll~~-~~  214 (417)
                      .......+..-+.-++++++++.-+++...+++|.+.-...               ..   -.-.+++|.|+++|.+ ++
T Consensus       254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde  333 (859)
T KOG1241|consen  254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE  333 (859)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence            66666677777888889999999999999999985321100               00   0122457778888853 22


Q ss_pred             -----chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 014864          215 -----KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR  289 (417)
Q Consensus       215 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  289 (417)
                           +...-..|.-||.-++....   ......++|.+-.-++++|..-++.+..+++.+..+++...-.-+-.+.+|.
T Consensus       334 ~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~  410 (859)
T KOG1241|consen  334 DDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS  410 (859)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence                 23444555555544444321   1223466777777888899999999999999999888765555555678999


Q ss_pred             HHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-----
Q 014864          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-----  363 (417)
Q Consensus       290 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-----  363 (417)
                      ++.++.++...++..+.|++|.++...++.... ......++.++..|++  .|.+-.++||++.+++...++..     
T Consensus       411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~q  488 (859)
T KOG1241|consen  411 IINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQ  488 (859)
T ss_pred             HHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999888889999999999999877643321 2234667778888875  58999999999999984322110     


Q ss_pred             ----HHHHHCCCHHHHHHHhcc---CCHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864          364 ----QAVIEANIIGPLVALLEN---AEFDIKKEAAWAISNATSGGTHEQIK  407 (417)
Q Consensus       364 ----~~l~~~~~i~~L~~~l~~---~~~~v~~~a~~~L~nl~~~~~~~~~~  407 (417)
                          ...++ .++..|+..-+.   .+..+|..|..+|..++..++.+...
T Consensus       489 t~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~  538 (859)
T KOG1241|consen  489 TDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP  538 (859)
T ss_pred             CCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence                01111 233344443332   35789999999999999987654433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.6e-08  Score=95.94  Aligned_cols=325  Identities=18%  Similarity=0.192  Sum_probs=243.0

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCc-
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS-  149 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~-  149 (417)
                      +.++.|+..+.+ .-.+.+..|+..|..+.    ..++..+...| ++.|++.|..+. ++++...++.++.++..+.. 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s----rkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS----RKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHH----HHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            688999998886 45789999999998875    24455555555 899999998653 58999999999999988642 


Q ss_pred             -----hh----------HHHH-HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhc-CCHHHHHHHhc
Q 014864          150 -----EH----------TKVV-IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQ-GGLVPLLAQLN  211 (417)
Q Consensus       150 -----~~----------~~~i-~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~-g~i~~L~~ll~  211 (417)
                           ..          .+.+ ...+.|..|+.++...|..||..++..|.++... +++.++.++.. -+|..++.++ 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 11          1223 3457889999999999999999999999998754 45566666543 4688999999 


Q ss_pred             CCCchhHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhcCC---C-hHHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 014864          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQ-VSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (417)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~---~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (417)
                      .+..+.++-.++..|..+.++.+..+..+ ...++..|+.++...   | .-|..+++..+.||..++..+.+.+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            78888899999999999999986665544 488899999999754   3 357889999999999998888888999999


Q ss_pred             hHHHHhhcCCC---C-----hh-----hHHHHHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhcCCC-chhHHH
Q 014864          287 FPRLAEFLMHP---S-----PS-----VLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNY-KKSIKK  346 (417)
Q Consensus       287 ~~~L~~~l~~~---~-----~~-----v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~  346 (417)
                      +|+|.++|.-.   +     |.     -...++.++..++.-.      ......+...+++..|..++-++. ..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            99999887532   2     11     1234566666665322      122234667899999999998873 568999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHCC---------CHHH-HHHHh-ccCCHHHHHHHHHHHHHhhCCCCH
Q 014864          347 EACWTVSNITAGNREQIQAVIEAN---------IIGP-LVALL-ENAEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~---------~i~~-L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      ++..+++++..++......+.+..         .+-. ++.+. ....+..|..+.+++..+......
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence            999999999999887777665421         1112 22222 345789999999999998887543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.25  E-value=1.2e-09  Score=96.51  Aligned_cols=280  Identities=14%  Similarity=0.093  Sum_probs=203.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      .+.+++.|..+|......+.+.+.++++.. +....-....-....|...++++.+++....|++||-.+... ++.+..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence            678888999999989888999999887654 222111000111334455566644467888899999999986 888888


Q ss_pred             HHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          155 VIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       155 i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ++...++..++..+.  ..+..++.+.+.+++-++.+++.. +.+...+.++.|..++..+..+.+.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888888999988883  367889999999999999887755 55688889999999998788999999999999999987


Q ss_pred             CCCCCh------hhhhchHHHHHHhhcC---CChHHHHHHHHHHHHh-------ccCCh---------------------
Q 014864          233 KPQPPF------DQVSPALPALAHLIHS---NDDEVLTDACWALSYL-------SDGTN---------------------  275 (417)
Q Consensus       233 ~~~~~~------~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~l-------~~~~~---------------------  275 (417)
                      .+....      ..+..-++..++.|..   +|+++..+.-..-..|       +.-++                     
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            643321      1223334444444432   3666554433322222       21110                     


Q ss_pred             --HHHHHHHHc--CChHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHH
Q 014864          276 --DKIQAVIEA--GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW  350 (417)
Q Consensus       276 --~~~~~~~~~--~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  350 (417)
                        ++...+.+.  .++..|+.+|+.+ +|.+..-||.=||......|+....+.+.|+=..+++++.++ +++||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence              112222221  4577889999866 488889999999999999999988888999999999999999 9999999999


Q ss_pred             HHHHHhcC
Q 014864          351 TVSNITAG  358 (417)
Q Consensus       351 ~L~nl~~~  358 (417)
                      ++-.+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            98877543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.5e-09  Score=94.75  Aligned_cols=184  Identities=16%  Similarity=0.191  Sum_probs=154.5

Q ss_pred             CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHH
Q 014864          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (417)
Q Consensus       130 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l  209 (417)
                      +.+-+..|+.-|-.++.. -++...++..|+...++.++++++..+|+.|+|+|+..+.++|..+..+++.|++..|+..
T Consensus        96 ~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            378889999999988885 7778888999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 014864          210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (417)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (417)
                      +..+.+...+..|+.+++.+.+..+.. ......++...|...+++  .+..++..++..+.++..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            977778888899999999999987443 334446679999999988  56778889999999998776665555666666


Q ss_pred             hHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      -..+..+....+..+...++.++-.+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6677777777778888888877766554

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.8e-09  Score=102.84  Aligned_cols=260  Identities=18%  Similarity=0.170  Sum_probs=204.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      +..|++-|....++..|.+|+.-|+.+.. ++.+....+--...+|.|+.+|+. .+.++..+|+++|.+++.--|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            55566666655338888888888887665 444444433334678999999986 6799999999999999988888888


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-C
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T  274 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~  274 (417)
                      .+++.++|+.|+..|..-.-.++.+.++.+|-.+++..|  ....-.|++...+.+|.--...++..|+.+..|+|.. .
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999988666788999999999999999854  3344478888888888766778899999999999864 2


Q ss_pred             hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHcCChHHHHHhhcCCC---chhHHHHH
Q 014864          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD---DMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEA  348 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a  348 (417)
                      .+....+.+  .+|.|..+|++.+.+..+.++-++..++.+.   +...+.+...+++.....++.-..   +..+.-..
T Consensus       327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            233344444  5899999999999999999999998887543   455666778899999988887552   23455667


Q ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864          349 CWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (417)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~  381 (417)
                      ...|+-++.+++.-...+...++...|.++|..
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            788999999999988888999999999998854

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=3.8e-09  Score=92.21  Aligned_cols=186  Identities=23%  Similarity=0.222  Sum_probs=154.1

Q ss_pred             cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (417)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (417)
                      .+.+.+.+..|+..|..++..  -++...++..|++..++.++++++ ..+|..|+|+++..+..+|.....+.+.|+++
T Consensus        93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            356788999999999988754  567777899999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864          163 IFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (417)
Q Consensus       163 ~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (417)
                      .|+..+.+ ++..++..|+++++++..+.+.....+...++...|...+... .+..+++.++..+.++...........
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999986 4566789999999999999999999999999999999999543 578899999999999998874443333


Q ss_pred             hh-chHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          241 VS-PALPALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       241 ~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      .. +....+..+....+.++.+.++.++..+.
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            33 33344555556667777777777666554

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.17  E-value=1.6e-08  Score=89.56  Aligned_cols=323  Identities=13%  Similarity=0.089  Sum_probs=221.5

Q ss_pred             CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHH-------HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (417)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~  145 (417)
                      .+..++.++.. ..++.....+..+..+++.+  +....+.       ....-+.++.+|..++ .-+...+.+++..++
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence            45667777765 33556666777788888764  2222211       2234677888998888 677777999999988


Q ss_pred             CCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh-cCCCchhHHHHHH
Q 014864          146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT  223 (417)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~~a~  223 (417)
                      ...+.........=....|...+++ .+..-...|+.+|..+...++ +|..+...+++..++..+ ....+..++...+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            7433322110000112334444554 566677788889988888776 788888888899999888 4455788999999


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh------HHHHHHHHcCChHHHHhhcCC
Q 014864          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH  296 (417)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~~~~L~~~l~~  296 (417)
                      .+++-|+..++........+.++.|..++.+. .++|..-++.++.|+....+      +....++..++.+.+-.+...
T Consensus       222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r  301 (442)
T KOG2759|consen  222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER  301 (442)
T ss_pred             HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence            99999998765554444467899999999765 67788889999999987764      333455666655544444332


Q ss_pred             --CChhhHHHHHHH-------HHHhhcCCh-----------------------HHHHHHH--HcCChHHHHHhhcCCCch
Q 014864          297 --PSPSVLIPALRT-------VGNIVTGDD-----------------------MQTQCVI--EYQALPCLLNLLSGNYKK  342 (417)
Q Consensus       297 --~~~~v~~~a~~~-------L~~l~~~~~-----------------------~~~~~~~--~~~~l~~L~~ll~~~~~~  342 (417)
                        .|+++....-..       .-.+++.+.                       +....+-  +..++..|+.+|+.+.+|
T Consensus       302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp  381 (442)
T KOG2759|consen  302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP  381 (442)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence              233332221111       111111110                       1111111  236778999999988679


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .+-.-||.=++......|+....+.+.|+=..++++++++|++||.+|+.|+..+..+
T Consensus       382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            9999999999999999899888888999999999999999999999999999887654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=9.1e-09  Score=100.21  Aligned_cols=269  Identities=19%  Similarity=0.233  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (417)
                      ..|+.|........+.++.|+-+       +|..++.|-+   .--|..|+..|+.+..-.+.....-+.-|+.|.++++
T Consensus       451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL  520 (1387)
T KOG1517|consen  451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL  520 (1387)
T ss_pred             HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence            45677777777766666555553       5656665543   3447889999999888778888888888999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--chhHHHHHHHHHhhhhcCCCCCChhhh-hch
Q 014864          168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQV-SPA  244 (417)
Q Consensus       168 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~  244 (417)
                      |+++-.+++...+++...|..-++.|+..+++.++-..+++.+..++  +++-+..++.+|+.++.+.+..+.... .+.
T Consensus       521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l  600 (1387)
T KOG1517|consen  521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL  600 (1387)
T ss_pred             hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence            99999999999999999998777889999999988888888885423  457888899999999998765555544 567


Q ss_pred             HHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcC----ChHH
Q 014864          245 LPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQ  319 (417)
Q Consensus       245 l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~----~~~~  319 (417)
                      +...+..+.++ .+-++..+|-||+.|-.+.++..-.-...+..+.|+.+|.++-++||..|+.+||.+..+    .+++
T Consensus       601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~  680 (1387)
T KOG1517|consen  601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ  680 (1387)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence            77888888875 678899999999999877766544456667889999999999999999999999999886    3443


Q ss_pred             HHHH------------HHcCCh---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 014864          320 TQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI  367 (417)
Q Consensus       320 ~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (417)
                      ...+            ++..+.   -.++.+++++ .+-+|.+.+-+|+.+..+...+...+.
T Consensus       681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            3322            122122   2567777888 999999999999999987666555443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.00  E-value=4.4e-08  Score=89.83  Aligned_cols=315  Identities=14%  Similarity=0.060  Sum_probs=202.0

Q ss_pred             cCHHHHHhhhc----C-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHh-CC-HHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864           73 ENLPVMVAGVW----S-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV-VPRFVEFLLREDYPQLQFEAAWALTNIA  145 (417)
Q Consensus        73 ~~l~~l~~~l~----s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~-i~~Lv~lL~~~~~~~~~~~a~~~L~~l~  145 (417)
                      +.+|.+++.+-    . +....+..++..+..++... .| -..+..+ .+ +.....-+++..+..+|..|+.+|.+-+
T Consensus       129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl  206 (858)
T COG5215         129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL  206 (858)
T ss_pred             ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence            34566655543    3 33467788888888886554 33 1112222 22 3333445565555789999999998733


Q ss_pred             CCCchhHHHHHhCC----ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHH
Q 014864          146 SGTSEHTKVVIDHG----AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (417)
Q Consensus       146 ~~~~~~~~~i~~~g----~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~  221 (417)
                      ..   .+..+-..+    .+...+..-+.++.+++..+..+|..|..-.-.+.+..++........+.+ ++++.++...
T Consensus       207 ~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~q  282 (858)
T COG5215         207 MF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQ  282 (858)
T ss_pred             HH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Confidence            21   111111112    234445555678999999999999998755444444555543333333444 8889999999


Q ss_pred             HHHHHhhhhcCCCC----------CCh-------hhhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHH
Q 014864          222 ATWTLSNFCRGKPQ----------PPF-------DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK  277 (417)
Q Consensus       222 a~~~l~~l~~~~~~----------~~~-------~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~  277 (417)
                      +....+.+|.....          .+.       ..+..++|.|+++|...       |..+.-.+..||.-.+....+ 
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-  361 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-  361 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence            99999999875411          111       11356899999999542       334555555666555443322 


Q ss_pred             HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                        .+.+. ++..+-.-++++++.-+..|+.++|.+..+..+.....+-...+|.+...+.++ .-.++..++|+++.|+.
T Consensus       362 --~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad  437 (858)
T COG5215         362 --KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             --HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence              22222 555566667889999999999999999999887766666778899999999977 88999999999999986


Q ss_pred             CCHHHHHHHHHCCCHHHHHHHhc---cCCHHHHHHHHHHHHHhhCCC
Q 014864          358 GNREQIQAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~~l~---~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .-++.+..   .|-++..+....   .+++.+..+++|...|++.+-
T Consensus       438 ~va~~i~p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~  481 (858)
T COG5215         438 HVAMIISP---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI  481 (858)
T ss_pred             HHHHhcCc---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence            54433222   222332222221   246788999999999998763

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.98  E-value=1.7e-08  Score=91.05  Aligned_cols=229  Identities=18%  Similarity=0.242  Sum_probs=157.9

Q ss_pred             hhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHh------cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          161 VPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       161 i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ...++.+|+  +.++++....+..+..+..+.+...+.+..      .....++++++ ..+|..+...++..++.+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            445555554  368899999999999999888877666655      23678899977 777999999999999999988


Q ss_pred             CCCCChhhhhchHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-----CCC--Chhh
Q 014864          233 KPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MHP--SPSV  301 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-----~~~--~~~v  301 (417)
                      .+........+.++.++..+.+    ++.+++.-++.++.+|.... .....+.+.++++.+..++     ..+  ...+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            7665555335556666666543    45667788999999998554 4556688899999999999     222  3567


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHhc
Q 014864          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLE  380 (417)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~~l~  380 (417)
                      +-.++.++--++.. ++....+.+.++++.+..+++....+.|-+-+..++.|++...++ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            77888888777754 445556778889999999998876889999999999999985443 6777778777776655554


Q ss_pred             c--CCHHHHHHHHH
Q 014864          381 N--AEFDIKKEAAW  392 (417)
Q Consensus       381 ~--~~~~v~~~a~~  392 (417)
                      .  .|+++....-+
T Consensus       294 rk~~Dedl~edl~~  307 (312)
T PF03224_consen  294 RKWSDEDLTEDLEF  307 (312)
T ss_dssp             S--SSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence            3  47777665443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.98  E-value=1.2e-08  Score=92.18  Aligned_cols=216  Identities=19%  Similarity=0.258  Sum_probs=152.1

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHH------hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~------~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  149 (417)
                      -.+++.+ +.+.+.....+..+..++... +...+.+..      ......|+.++.+++ ..++..|+.+|+.+....+
T Consensus        61 l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~  137 (312)
T PF03224_consen   61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGP  137 (312)
T ss_dssp             -HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCC
Confidence            3555555 567888888999999998875 344444443      236888999888888 8999999999999998755


Q ss_pred             hhHHHHHhCCChhHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh------cCCCchhHH
Q 014864          150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSML  219 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll------~~~~~~~~~  219 (417)
                      ....... .+.++.++.++.+    ++..++..|+.+|.++.... .+|..+.+.|+++.+..++      ....+..++
T Consensus       138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            5444322 3566777777764    45667899999999998665 4899999999999999999      455678899


Q ss_pred             HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChH-HHHHHHHcCChHHHHhhcCC
Q 014864          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND-KIQAVIEAGVFPRLAEFLMH  296 (417)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~L~~~l~~  296 (417)
                      ..++.+++-|+..++........+.+|.|..+++.. .++|..-++.++.|+...... ....++..|+++.+-.+...
T Consensus       216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred             HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence            999999999998864444444466899999999765 688889999999999877653 66778888776666555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=9.1e-07  Score=84.37  Aligned_cols=289  Identities=17%  Similarity=0.177  Sum_probs=217.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP---  191 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~---  191 (417)
                      .|+.|+.-+.+..-.+-|+.|+..|-.++.   .++..+.. .+++.|++.|..  .|+++...++.++.++....+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            388888887776657889999999999875   46666665 568889998875  689999999999999986542   


Q ss_pred             ---h----------HHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh---hhchHHHHHHhhcC
Q 014864          192 ---R----------CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---VSPALPALAHLIHS  254 (417)
Q Consensus       192 ---~----------~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~L~~ll~~  254 (417)
                         .          +.+ .+...+.|..++..+ ...|-.++..++..++++....|......   ...++..++.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          111 234566788888888 77889999999999999998875443322   25678999999998


Q ss_pred             CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC---C-hhhHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 014864          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---S-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (417)
Q Consensus       255 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~---~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  330 (417)
                      .-+.++.+++..|+.++.++....+.+.=.+++.+|..++...   + .-|...|+..|-|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            8899999999999999998887666666667999999999754   2 34677799999999999998888888999999


Q ss_pred             HHHHhhcCCC--c-----hhH-----HHHHHHHHHHHhc-CCH----HHH-HHHHHCCCHHHHHHHhccC--CHHHHHHH
Q 014864          331 CLLNLLSGNY--K-----KSI-----KKEACWTVSNITA-GNR----EQI-QAVIEANIIGPLVALLENA--EFDIKKEA  390 (417)
Q Consensus       331 ~L~~ll~~~~--~-----~~v-----~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~~l~~~--~~~v~~~a  390 (417)
                      .|.++|....  +     +.-     ...+..++.-+.. +++    .+. +.+...+++..|+.++-++  ..+++.++
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998775321  2     111     1344455555554 332    222 4556789999999998765  57999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHh
Q 014864          391 AWAISNATSGGTHEQIKYEHT  411 (417)
Q Consensus       391 ~~~L~nl~~~~~~~~~~~l~~  411 (417)
                      ..++.+.+.+. .....++.+
T Consensus       338 iitvAevVRgn-~~nQ~~F~~  357 (970)
T KOG0946|consen  338 IITVAEVVRGN-ARNQDEFAD  357 (970)
T ss_pred             HHHHHHHHHhc-hHHHHHHhh
Confidence            99999999874 444445543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.92  E-value=1.7e-07  Score=88.48  Aligned_cols=318  Identities=14%  Similarity=0.121  Sum_probs=202.9

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHhCCCchhH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      .+..++..++++.+..+...+..+.++.+.-....+++-.+.-.+..++..++.++. ..+-.....++.+-..+.  . 
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r--~-  793 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR--V-  793 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc--c-
Confidence            356677778888888888888888877654333333333344445555555555441 233333333333322210  0 


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH--HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      +... ..++..++..|+++++.++.+|+..++.++.--..|.  +.+...|.  .|...+ ....+++.-.++.++..++
T Consensus       794 kpyl-pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  794 KPYL-PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             ccch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence            0000 1345667788999999999999999999973222221  12222222  344555 6778888888888777776


Q ss_pred             cCCC-CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       231 ~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                      .... .....-+.+++|.|...|.+...+|+++++..++.++...++.+..--=..+.=.|+.+|.+.+..++..|..++
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5431 112233478899999999999999999999999999987665321100012334577788888889999999999


Q ss_pred             HHhhcC--ChHHHHHHHH-----------------------c---CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864          310 GNIVTG--DDMQTQCVIE-----------------------Y---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (417)
Q Consensus       310 ~~l~~~--~~~~~~~~~~-----------------------~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (417)
                      |.|+..  ..+....+++                       +   .++|.|++=...+ +..|+.-...+++.+...-.+
T Consensus       950 G~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen  950 GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred             hHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHH
Confidence            988742  2222222211                       2   3445555555555 778888888888888763222


Q ss_pred             -HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          362 -QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       362 -~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                       ..+++.  -+.|.|-+.|.+.|.--|..|+.++.+++.+.
T Consensus      1029 mskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1029 MSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence             223333  37888889999999999999999999998874

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.89  E-value=1.5e-07  Score=84.43  Aligned_cols=272  Identities=17%  Similarity=0.172  Sum_probs=188.5

Q ss_pred             HHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHh
Q 014864          109 IEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNI  186 (417)
Q Consensus       109 ~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl  186 (417)
                      .+.+...|.+..|+.++..++ ...++.++++.|-.+..  .++++.+...| +..++.+-+. ..++.....+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            455667789999999999887 23579999999999987  78888888776 5555555543 5678899999999999


Q ss_pred             hCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCC-hhhhhchHHHHHHhhcCCChHHHHHHH
Q 014864          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPP-FDQVSPALPALAHLIHSNDDEVLTDAC  264 (417)
Q Consensus       187 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~  264 (417)
                      ..++.+....+++.|++..++--+ ...++.+.+.++.+|.|++.+.. ..+ ......+-.-|..+-.+.|+-.+.++|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988888999999999988887 77789999999999999988752 222 222244445566666667888899999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhH
Q 014864          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (417)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  344 (417)
                      .+++-++.+.+ .-..+.++|.+...-+++.+-+|.....   --...+.+.        ....++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999986654 3455777787777777777666532211   001111111        123467788889877 6565


Q ss_pred             HHHHHHHHHHHhc-CCHH-HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          345 KKEACWTVSNITA-GNRE-QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       345 ~~~a~~~L~nl~~-~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      +.-+++-++.=++ .+.. ..+.+-+-|.|+.|-++.++++.--.+.|-.+|.-+
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            5555555544333 2122 223344678999999999877754444455555444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.87  E-value=4e-07  Score=83.72  Aligned_cols=320  Identities=12%  Similarity=0.110  Sum_probs=203.5

Q ss_pred             hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCC
Q 014864           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (417)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~  160 (417)
                      .+.++++.-+..|+.++..+..+. +.....-+-...+|.+...+.++. -.++..++||++.++.+-+   ..+-..|-
T Consensus       374 ni~~~~w~nreaavmAfGSvm~gp-~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~va---~~i~p~~H  448 (858)
T COG5215         374 NIRSESWANREAAVMAFGSVMHGP-CEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADHVA---MIISPCGH  448 (858)
T ss_pred             hccCchhhhHHHHHHHhhhhhcCc-cHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHHHH---HhcCcccc
Confidence            567889999999999999887654 222222334556888888888666 7899999999999987422   22333454


Q ss_pred             hhHHHHh-hC--CCCHHHHHHHHHHHHHhhCCCchHHH---HHHh---cCCHHHHHHHhcC-CCchhHHHHHHHHHhhhh
Q 014864          161 VPIFVKL-LY--SPSDDVREQAVWALGNIAGDSPRCRD---LVLS---QGGLVPLLAQLNG-QPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       161 i~~L~~l-l~--~~~~~i~~~a~~~L~nl~~~~~~~~~---~~~~---~g~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~  230 (417)
                      ++..+.. +.  .+++.+...+.|..-|++.+-++...   .++.   ..++..|++--.. ..+...+..+..+|..|.
T Consensus       449 l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli  528 (858)
T COG5215         449 LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI  528 (858)
T ss_pred             ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            5444432 22  25788899999999999865443221   1110   1123333332221 234556667777777776


Q ss_pred             cCCCCCChhhhhchHHH-----------HHHhhcCCC----hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864          231 RGKPQPPFDQVSPALPA-----------LAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~-----------L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~  295 (417)
                      ...|........++...           +-+.+...|    .+++.+.+..|..+.......++.+-+. ++..++.+|.
T Consensus       529 ~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~-lm~Lf~r~le  607 (858)
T COG5215         529 LICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQ-LMELFIRILE  607 (858)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHHHHHh
Confidence            66554444443333333           333333333    4566666666666654332222222222 5777888888


Q ss_pred             CCChh-hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Q 014864          296 HPSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGP  374 (417)
Q Consensus       296 ~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  374 (417)
                      +.++. +-.....+|++++..-.+... ..-..++|.+.+-|+.. +..+...|...++.++..-...... ....+...
T Consensus       608 s~~~t~~~~dV~~aIsal~~sl~e~Fe-~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~df~~-y~d~~ms~  684 (858)
T COG5215         608 STKPTTAFGDVYTAISALSTSLEERFE-QYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTDFNI-YADVLMSS  684 (858)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHH
Confidence            87543 445678888998876555544 34457899999999877 8899999999999998642222222 23357889


Q ss_pred             HHHHhccC--CHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864          375 LVALLENA--EFDIKKEAAWAISNATSGGTHEQIKYE  409 (417)
Q Consensus       375 L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~l  409 (417)
                      |++.|+++  +.+++-..+.+++.++..-..++..||
T Consensus       685 LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL  721 (858)
T COG5215         685 LVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYL  721 (858)
T ss_pred             HHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHH
Confidence            99999876  568999999999998887666666665

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=3.7e-06  Score=72.43  Aligned_cols=318  Identities=18%  Similarity=0.172  Sum_probs=206.2

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc---HHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.+-..|..+|..++..++..+..++...+...   +..++..|+++.++..+...+ .++-..|...+..++.. +...
T Consensus        85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paal  162 (524)
T KOG4413|consen   85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAAL  162 (524)
T ss_pred             HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHHH
Confidence            455556667888899999999988876542222   333568999999999999988 89999999999999985 7778


Q ss_pred             HHHHhCCChhHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh-
Q 014864          153 KVVIDHGAVPIF--VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF-  229 (417)
Q Consensus       153 ~~i~~~g~i~~L--~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l-  229 (417)
                      ..+.++.....+  ..+-...+.-.+......+..+.+-++.....+-.+|.+..|..-+....|.-++.+++.....| 
T Consensus       163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa  242 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA  242 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence            888887776543  33444456677888888999999888888888888888888887775545554444444433333 


Q ss_pred             ---------------------hcCCCCCChhhh---------------------------hchHHHHHHhhcCCChHHHH
Q 014864          230 ---------------------CRGKPQPPFDQV---------------------------SPALPALAHLIHSNDDEVLT  261 (417)
Q Consensus       230 ---------------------~~~~~~~~~~~~---------------------------~~~l~~L~~ll~~~~~~v~~  261 (417)
                                           ..+....++...                           ...+.-...++...|++.+.
T Consensus       243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie  322 (524)
T KOG4413|consen  243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE  322 (524)
T ss_pred             HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence                                 332211111100                           01122233455667888888


Q ss_pred             HHHHHHHHhccCChHHHHHHHHcCC--hHHHHhhcCC-CChhhHHHHHHHHHHhhcCC---hHH----------HHHHHH
Q 014864          262 DACWALSYLSDGTNDKIQAVIEAGV--FPRLAEFLMH-PSPSVLIPALRTVGNIVTGD---DMQ----------TQCVIE  325 (417)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~--~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~---~~~----------~~~~~~  325 (417)
                      .+..+++.+..+..+ .+.+.+.|-  ...++.-..+ +...-+..++++|.+++...   +++          +....+
T Consensus       323 aAiDalGilGSnteG-adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd  401 (524)
T KOG4413|consen  323 AAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD  401 (524)
T ss_pred             HHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH
Confidence            888888888765543 344555543  3333333333 33345677888888887432   111          111111


Q ss_pred             -------cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC---CHHHHHHHHHHHH
Q 014864          326 -------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAIS  395 (417)
Q Consensus       326 -------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~~L~  395 (417)
                             ..-+..+..+++.+ .++++..+..++..++.........+-..+++....+.-...   .-+-+.++|.++.
T Consensus       402 aaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAia  480 (524)
T KOG4413|consen  402 AAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA  480 (524)
T ss_pred             HHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence                   13455677888888 999999999999999887554444444677777666543322   2355667777766


Q ss_pred             Hh
Q 014864          396 NA  397 (417)
Q Consensus       396 nl  397 (417)
                      +-
T Consensus       481 ea  482 (524)
T KOG4413|consen  481 EA  482 (524)
T ss_pred             HH
Confidence            53

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.82  E-value=3.4e-07  Score=82.26  Aligned_cols=267  Identities=14%  Similarity=0.084  Sum_probs=181.2

Q ss_pred             cCHHHHHhhhcCCCh--HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      +.+..|++++.+++.  .++.+|.+.|..++..   ++.+.+..-| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            578899999998765  4589999999998864   5666666666 555555555555589999999999999999999


Q ss_pred             hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ..+.+++.|++..++......++.+..+|+.+|+|++- .....+..+++..+-+-|..+. .+.|.-++..||-+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999984 3445667777877777787777 666888899999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                      +..+.........+.+..+-.++.+-|+.--..   --..-+.+        .....+++|+++|++.-.+.+.-+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            987654444444555555555555555432111   00001111        1113578899999866544443332222


Q ss_pred             HHhhc--CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          310 GNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       310 ~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      ..=+.  ......+.+-+-|.++.|-.+..++ +..--+-|-.+|.-|-
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG  451 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG  451 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence            11111  1112233344558888898888877 5544444444554443

>TIGR02270 conserved hypothetical protein

Probab=98.78  E-value=4e-06  Score=77.56  Aligned_cols=242  Identities=17%  Similarity=0.058  Sum_probs=165.6

Q ss_pred             CHHHHHhhhc-CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      .++.++..|. .++..+...++..+..   .+ .+.        .+..|+..|.+.+ +.++..++.+|+.+-..     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA---QE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence            4567777774 4556666555544432   11 111        2788888998887 78999999988865442     


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                            +..+.|+.+|.+.++.++..++.+++..-.            ...+.+..++ ++.++.++..++.++..+...
T Consensus       117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                  567888889988899999888877776321            1345777778 688899999999999887754


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                                ..++.|...+.+.|+.|+..+++++..+..  +.         ....+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      445667777888899999999999877632  22         223444433444433433333344333


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                        +.+         ..++.|..+++++   .++..++++++.+-.  +         ..++.|+..+.+..  ++..|.+
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~~--~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--V---------EAAPWCLEAMREPP--WARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c---------chHHHHHHHhcCcH--HHHHHHH
Confidence              222         4577888888865   499999999997743  3         36778888887543  9999999


Q ss_pred             HHHHhhCC
Q 014864          393 AISNATSG  400 (417)
Q Consensus       393 ~L~nl~~~  400 (417)
                      ++..++.-
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99998764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=8.7e-07  Score=86.89  Aligned_cols=248  Identities=16%  Similarity=0.192  Sum_probs=190.1

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .+|-+++.|-|.  --+.-|+..|.+++... ...+..-..-|+.|..+++|+++. .+++-.-+.+...|...++....
T Consensus       473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            345555544433  23556777788887654 666777778899999999999998 89998888888888887777777


Q ss_pred             HHHhCCChhHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          154 VVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      .+++.++-..++..|..   -+++-+..|+++|..++.+-+-.++...+.+.+...+..+++++.+-++..++-+|+.|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            77776777777777765   246889999999999998888888889999999999999965557888999999999999


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccC----ChHHHHHH------------HHcCCh---HHH
Q 014864          231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PRL  290 (417)
Q Consensus       231 ~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~~---~~L  290 (417)
                      .+.+...+... ..+...|..+|.++-++|+..++.+|+.+..+    .++....+            ++.-+.   -.+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            98766665544 66788899999999999999999999998765    23322211            111111   267


Q ss_pred             HhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014864          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (417)
Q Consensus       291 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  325 (417)
                      +.+++...+-++....-+++.++.+.......+.-
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            77788888999999999999999888766654443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.5e-05  Score=74.80  Aligned_cols=310  Identities=16%  Similarity=0.215  Sum_probs=201.4

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .+..+++.+..+.+.+|.....++..+...........     +.+.+.++++... ..-+..+++.+..+..+.  ...
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence            45777888888899999999888887754432333322     3777888888777 788999999999988853  344


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHH-HHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~-~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      .+.+.+.+..|...+.+....... .+..+.-..+.. ++..--.++.  .++.++..+ .+....++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            566668888898888874443333 233332222211 1111111111  344555555 56677888888887777766


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~  311 (417)
                      .-+.   ..+...+|.++.-+..........++..++.++...+.... ..-..++|.+...|.+..++++..+..++-.
T Consensus       246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            5321   22344555555555444566677888888888877776655 3445699999999999999999999999888


Q ss_pred             hhcCCh-HHHHHHH------------------------------HcCChHHHHHhh----cCCCchhHHHHHHHHHHHHh
Q 014864          312 IVTGDD-MQTQCVI------------------------------EYQALPCLLNLL----SGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       312 l~~~~~-~~~~~~~------------------------------~~~~l~~L~~ll----~~~~~~~v~~~a~~~L~nl~  356 (417)
                      ++.--+ ..++.++                              +.-.+..++.++    ... +..+++.++..+.|++
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence            774322 1111111                              122223333443    333 6678899999999999


Q ss_pred             c--CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          357 A--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       357 ~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .  .++..+..++. .++|.|-..+.+..|++|..+..+|+.+...
T Consensus       401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            7  34555544443 4677777777777899999999999877654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=5.6e-06  Score=78.40  Aligned_cols=257  Identities=16%  Similarity=0.155  Sum_probs=186.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      +-+-++.+|+++- +-+|..|+.++..+...-|+..+     ..+|.|..-|.++|+.++..|+.+++.|+..+|..-- 
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence            3556777888888 89999999999998876565544     5789999999999999999999999999988875422 


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHH--hccC
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSY--LSDG  273 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~--l~~~  273 (417)
                          ..-|.+.+++..+.+.-+....+..+++|+-..|.    .-...+|.|..++++.. ..+...+..++..  ++.+
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence                14567888887777888888888888888866542    23567888888887663 4455555554432  3333


Q ss_pred             ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       274 ~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                      .++... .+.. +++.|-.++.+.|+.++--++-+++.++..++...+.     --+.++..|.+. ++.+|-.|...|-
T Consensus       290 ~~d~~a-siqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            211111 1111 5778888899999999999999999999888866553     246789999999 9999999999998


Q ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCH
Q 014864          354 NITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      -+...  +++..     ++..|+..+... ....|-+.+.-+..++...+.
T Consensus       362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY  405 (877)
T KOG1059|consen  362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY  405 (877)
T ss_pred             HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence            88753  33332     344555554433 347777777777777766543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=8.7e-08  Score=87.30  Aligned_cols=281  Identities=17%  Similarity=0.247  Sum_probs=190.8

Q ss_pred             HHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (417)
Q Consensus       112 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  191 (417)
                      +.+..+.+.|+++|++++ ..+..-++..++|..-.-+.-...+++.|+|..|+.++.+.+..++....|++..+..+..
T Consensus       427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            456678999999999988 7888889999999988777778889999999999999999999999999999999986654


Q ss_pred             hH-HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC--CChhhh-----h-chHHHHHHhhcCCChHHHHH
Q 014864          192 RC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPFDQV-----S-PALPALAHLIHSNDDEVLTD  262 (417)
Q Consensus       192 ~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~-----~-~~l~~L~~ll~~~~~~v~~~  262 (417)
                      +. +-.++..-++..++.+. .++...++..+...+.|+..+...  ......     . -....|+..+...+|-....
T Consensus       506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            33 33556677899999999 888899999999999999885421  111111     1 24455667777777766677


Q ss_pred             HHHHHHHhccCChHHHHHHHHc-CChHHHHhhc----CC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 014864          263 ACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFL----MH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (417)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l----~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  330 (417)
                      .|..|.+++..+++....+.+. ..+..+..+|    ..       ....+..+-....-++....+.....+.-.   |
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p  661 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P  661 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence            7888888877666554444433 2333333222    21       112233333333333333222221111100   2


Q ss_pred             HHHHhhcCC--CchhHHHHHHHHHHHHhc---CCH------HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          331 CLLNLLSGN--YKKSIKKEACWTVSNITA---GNR------EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       331 ~L~~ll~~~--~~~~v~~~a~~~L~nl~~---~~~------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      .+-..=.+.  .+.++-.+..|.+.|+..   ++.      +.++.+.+.|+-+.|...-.++.+.||+.+-.+|.++
T Consensus       662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            221111111  145677888899888764   222      6677888888888888888888889999999999886

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.1e-05  Score=77.52  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (417)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  157 (417)
                      +.+.|++.+.-++-.|+.++.++.+.   +.+.     .+.|.+-++|++.+ +-++..|+.|...+....|+..+.   
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~---Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~---  179 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSP---EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEH---  179 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCH---HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHH---
Confidence            33444555666666666666666532   2222     23555666666666 667777776666666655554432   


Q ss_pred             CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (417)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  191 (417)
                        .++..-.+|.+.+.-|...++..+..+|..++
T Consensus       180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~  211 (866)
T KOG1062|consen  180 --FVIAFRKLLCEKHHGVLIAGLHLITELCKISP  211 (866)
T ss_pred             --hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence              23344455555555555555555555554443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.68  E-value=1e-06  Score=81.88  Aligned_cols=266  Identities=16%  Similarity=0.121  Sum_probs=171.5

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      +..++..|++..+.++..|+.....++..-+ ......+...|.  .|.+.|.... +++.-..+.+++.|.+...-...
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence            4667778899999999999876665532110 122334445553  4677777777 88888888777777663111100


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .---.|++|.|..+|.+.+.+++...+..++.||..+|+....----.+--.|+..| .+.+.+++++|..++..+++.-
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence            001238999999999999999999999999999988775321111111233466777 6778999999999999998863


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                      .      -..++..|+.-|...+-..+....-+++-.+....-       ..++|.|+.=-..++..++.-.+++++.+.
T Consensus       762 G------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         762 G------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             C------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence            1      134555666666555444444333344433322211       135677776667778888888888887766


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (417)
                      .....+... .-.-+.|.|-..|.+. ++.-|..|..++..++-++
T Consensus       829 eyig~~s~d-Yvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         829 EYIGQASLD-YVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHH-HHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCC
Confidence            433322211 1124567777888887 8888999998888887653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=7.2e-06  Score=78.66  Aligned_cols=276  Identities=15%  Similarity=0.176  Sum_probs=195.7

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      .|.+-+.++..++.++..|+-++.++....  |..-+    .+++..-++|.+.+ ..+...++..+..+|..+++....
T Consensus       144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  144 APEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence            577778888999999999999988887653  33322    24788888888888 788899999999999988877777


Q ss_pred             HHhCCChhHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC---CC--
Q 014864          155 VIDHGAVPIFVKLLYS---------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QP--  214 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~---------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~---~~--  214 (417)
                      +.+  .++.|+..|+.               ++|-++...++.|+-+-.+++...+.+-+     .|-+....   +.  
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~  289 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA  289 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence            765  66767666632               57889999999999988777765554322     23333321   11  


Q ss_pred             chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l  294 (417)
                      ...+...++.++..+-...     ....-++.+|-++|.+.|..++.-++..|.++...++..++.-     =..++.+|
T Consensus       290 GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL  359 (866)
T KOG1062|consen  290 GNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECL  359 (866)
T ss_pred             hhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHh
Confidence            1335555555555444331     1223467788889999999999999999999988777655432     35689999


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHH---H----
Q 014864          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQA---V----  366 (417)
Q Consensus       295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~---l----  366 (417)
                      +++|..++..|+..+-.+...+.  ...     .+.-|+.+|.+. +++++...+.-+.-++. ..|+..+.   +    
T Consensus       360 ~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl  431 (866)
T KOG1062|consen  360 KDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVL  431 (866)
T ss_pred             cCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            99999999999999888875443  222     356688888888 99999999988888886 33433322   1    


Q ss_pred             ------HHCCCHHHHHHHhccC
Q 014864          367 ------IEANIIGPLVALLENA  382 (417)
Q Consensus       367 ------~~~~~i~~L~~~l~~~  382 (417)
                            ++..++..++.++.+.
T Consensus       432 ~~aG~~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  432 KTAGDFVNDDVVNNLLRLIANA  453 (866)
T ss_pred             HhcccccchhhHHHHHHHHhcC
Confidence                  2345566777777655

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.64  E-value=1.5e-05  Score=73.25  Aligned_cols=251  Identities=26%  Similarity=0.287  Sum_probs=171.9

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ..++.+++.+.+.++.++..|+..+..+...            ..++.+..++.+.+ +.++..|+.+|+.+-..     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~-----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP-----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh-----
Confidence            3578889999999999999999887665322            25999999999999 89999999988887542     


Q ss_pred             HHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCc-----------hhHHH
Q 014864          153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK-----------LSMLR  220 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----------~~~~~  220 (417)
                            ..++.|+.++. +++..++..+.++|+.+-...           .+.+++..+.+...           ..++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  46888999998 599999999999999874221           36777777733221           13445


Q ss_pred             HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChh
Q 014864          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS  300 (417)
Q Consensus       221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  300 (417)
                      .+...+..+-.          ...++.+..++.+.+..++..+..+|+.+....         ..+.+.+...+.+.++.
T Consensus       168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            55555554443          245677888888888899999999999887554         23457788888999999


Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc
Q 014864          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE  380 (417)
Q Consensus       301 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~  380 (417)
                      ++..++..++.+-....           ++.+...+.+. +..++..+...+...  +..         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~~~-----------~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDEEA-----------VDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcchh-----------HHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            99999999988764332           34456666665 555555444444311  000         11233334444


Q ss_pred             cCCHHHHHHHHHHHHHhhCC
Q 014864          381 NAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       381 ~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +....++..+..++..+...
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            44555555555555554443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.62  E-value=2.1e-06  Score=81.51  Aligned_cols=262  Identities=16%  Similarity=0.152  Sum_probs=168.8

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC--chhH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHT  152 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~  152 (417)
                      ..++..|++..+.++.+|+..+..++..-+ ...-+.+...|+  .|.+.|.... +++.-..+.++..|...-  ....
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence            344556778899999999888776643211 112233445554  4778888777 888777666666665521  1111


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ..+  .+++|.|..+|++.+.++++.++..++.||..++++...----.+--.|+.+| ...+.++++++..++..++..
T Consensus       879 pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iaka  955 (1172)
T KOG0213|consen  879 PPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKA  955 (1172)
T ss_pred             CCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHh
Confidence            112  27899999999999999999999999999977765321111111233566777 666789999999999999986


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      -.      -..++..|+.-|...+-..+....-+++-.+....-       ..++|.|+.--..++..++.-.+++++.+
T Consensus       956 IG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen  956 IG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred             cC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence            31      134555566655544433333333333333322111       13677777777778888999999998887


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      .....+..... -.-+.|.|-..|.+. +..-|..|+.++..++-+
T Consensus      1023 FeyigemskdY-iyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1023 FEYIGEMSKDY-IYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHhhhH-HHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence            75433222211 124677888888887 888888998888888764

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.58  E-value=8.3e-06  Score=74.62  Aligned_cols=316  Identities=18%  Similarity=0.158  Sum_probs=194.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .+.+...+-+++.+++..|.+.+|.++..  ....+.+.+.++--.++.-|..+. +..-+.+|++.+..+..... ..+
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~  103 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK  103 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence            34444455566699999999999999865  466777888886666667666543 35678899998888877421 111


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                       .+..|++..++.+..++++..+..|+.+|+.++-.+|   +.+...|++..|++.+.+ ...++...++.++..+...+
T Consensus       104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence             1244788999999999999999999999999998877   478899999999999955 44448889999999999886


Q ss_pred             CCCChhhhhchHHHHHHhh-cC------CCh--HHHHHHHHHHHHhccCChHHHHHHHH-cCChHHHHhhcCCCChhhHH
Q 014864          234 PQPPFDQVSPALPALAHLI-HS------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVLI  303 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll-~~------~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~L~~~l~~~~~~v~~  303 (417)
                      .........--+..++.-+ ..      ++.  +....+..++..+-..=++....-.+ ...+..|+..|..++++++.
T Consensus       179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence            4444332222233322222 11      122  34445555555544332222111111 13678899999999999999


Q ss_pred             HHHHHHHHhhcCChHH-HHHHH------HcCChHHHHHhhc--CCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHH
Q 014864          304 PALRTVGNIVTGDDMQ-TQCVI------EYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIG  373 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~-~~~~~------~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~  373 (417)
                      ..+..+-.+..-.... .....      ..|-...-.++-.  .+......... .-=.++... ..--...+++.|+++
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~  337 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE  337 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence            9988888776533211 11000      1111100000000  00000000000 000111110 011233456899999


Q ss_pred             HHHHHhccC-CHHHHHHHHHHHHHhhC
Q 014864          374 PLVALLENA-EFDIKKEAAWAISNATS  399 (417)
Q Consensus       374 ~L~~~l~~~-~~~v~~~a~~~L~nl~~  399 (417)
                      .|+++..+. +..+...|...|+.+..
T Consensus       338 ~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  338 ALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            999999876 88999999999987754

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.57  E-value=1.5e-06  Score=80.83  Aligned_cols=236  Identities=16%  Similarity=0.138  Sum_probs=157.0

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH--HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-  236 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-  236 (417)
                      ++..++.+|+++.+.++.+|+...+.|+.--..|  -+.+...|.  .|..-+ ....+++.-.++.+++.+....... 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            5677788999999999999999999886221111  122222222  234444 5667888877777777665543111 


Q ss_pred             ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcC-
Q 014864          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-  315 (417)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~-  315 (417)
                      ...-+.+++|.|...|.+...++..+....++.++...++.+..--=..+.=.|++.|.+.+.+++..|..++|.|+.. 
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            1123478899999999999999999999999999887765321100012334577888888999999999999988753 


Q ss_pred             -ChHHHHHHHH-----------------------cC---ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHH
Q 014864          316 -DDMQTQCVIE-----------------------YQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVI  367 (417)
Q Consensus       316 -~~~~~~~~~~-----------------------~~---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~  367 (417)
                       ..+....+++                       +|   ++|.|+.=...+ +..|+.-...+++.+...-. ...+++.
T Consensus       762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy  840 (975)
T COG5181         762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVY  840 (975)
T ss_pred             CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             2222222211                       23   344444444455 67788888888888775322 2333433


Q ss_pred             HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       368 ~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                        -+.|.|-+.|.+.|+--|..|..++.+++.++
T Consensus       841 --~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         841 --SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             --HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence              37788889999999999999999999998875

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1.8e-05  Score=75.06  Aligned_cols=219  Identities=16%  Similarity=0.148  Sum_probs=164.8

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      -+.++.+|.+.-+-++..|+-.+.++.-.. ++..     ...+|.|++-|.+++ |.++-.|+.+++.++..+|.+.- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAl-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEAL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            467788888888999999998888887553 2222     124899999999999 99999999999999998776532 


Q ss_pred             HHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          155 VIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                          ..-|.+.++|.. .|.=+....+..+++|+--.|...+.     .+++|..++.+..-.++...++.++..-+...
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                456888888864 44445566788899998777755444     68899999954445566666666554432222


Q ss_pred             CC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          234 PQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       234 ~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .. .....+.-++..|-.++.++|+.+..-++.+++.+...++..++.     .-..++.+|.+.|+.+|..|+..+--+
T Consensus       289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            22 233445677888888999999999999999999998877765442     356789999999999999999998777


Q ss_pred             hcC
Q 014864          313 VTG  315 (417)
Q Consensus       313 ~~~  315 (417)
                      +..
T Consensus       364 Vsk  366 (877)
T KOG1059|consen  364 VSK  366 (877)
T ss_pred             hhh
Confidence            643

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.56  E-value=6.5e-06  Score=80.22  Aligned_cols=311  Identities=13%  Similarity=0.115  Sum_probs=189.9

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHH
Q 014864           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (417)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  156 (417)
                      .+++.+.+.|.+.++.|+.-|..-+... .-..+.--+..++..++++|++.+ .++|..|++|++-+++.-++..  +.
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~--le   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ--LE   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH--HH
Confidence            7888999999999999999888766543 222222234456899999999998 9999999999999997433321  11


Q ss_pred             hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHH----HHHhcC-CCchhHHHHHHHHHhhhhc
Q 014864          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL----LAQLNG-QPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L----~~ll~~-~~~~~~~~~a~~~l~~l~~  231 (417)
                        ..++.|+.-+-++....+..+.-.|.....+-+..........+.+.+    .+.+.. .+...++-.++..+..+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              234455554434333344333333322222211111222222333334    433322 2233355556655554444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~  310 (417)
                      .........-..++..+..-+.++-..|+..++.+|+.++...+..   ++ .+++..|++-|... ++.....-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            3322222244566777888888888999999999999998654432   11 12456666666544 4445555667788


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-----
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-----  382 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-----  382 (417)
                      .++......... .-..++|.+.+..   +.. +.++|+.+..++.-+...+|..+-..+. .++..+++.+..+     
T Consensus       239 ~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGS-HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhc-ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            887654433221 1236788888888   555 8899999999999998877766544332 3444444444210     


Q ss_pred             -----------------------------CHHHHHHHHHHHHHhhCC
Q 014864          383 -----------------------------EFDIKKEAAWAISNATSG  400 (417)
Q Consensus       383 -----------------------------~~~v~~~a~~~L~nl~~~  400 (417)
                                                   .++||.+|+.++..++..
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS  362 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS  362 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence                                         147999999999888775

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=6.3e-05  Score=64.56  Aligned_cols=267  Identities=16%  Similarity=0.139  Sum_probs=166.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHH--hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      ...+++++.+.+ |.++..|+..+..++..   ..+.+.  +.-.++.+.+++....+  .+.|+.++.|++.+.. .++
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence            456888999998 99999999999998875   222222  22467888899987666  7889999999997765 677


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh-------hhhchHHHHHHhhcCCCh--HHHHHHHHH
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSNDD--EVLTDACWA  266 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-------~~~~~l~~L~~ll~~~~~--~v~~~a~~~  266 (417)
                      .+++. .+..++..+ .++...+...++..++|+++.+......       ...+.+.....+...+-.  .-..+.+..
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            77766 666677777 5555678888999999999875221111       112333444444443311  234566777


Q ss_pred             HHHhccCChHHHHHHHHcC--ChHHHHhhcCCCChhhHH-HHHHHHHHhhcCChHHHHHHHH--cCChHHHH--------
Q 014864          267 LSYLSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLI-PALRTVGNIVTGDDMQTQCVIE--YQALPCLL--------  333 (417)
Q Consensus       267 l~~l~~~~~~~~~~~~~~~--~~~~L~~~l~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~--------  333 (417)
                      +++++....++. .+....  ..+.+..+-. .+..+|. ..+.+|-|+|.....+-. +++  ..++|.++        
T Consensus       156 f~nls~~~~gR~-l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAGRK-LLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhhhh-HhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence            888876554432 233222  2233444444 4444544 477888888876654333 221  12233222        


Q ss_pred             -------------Hhhc-----CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHH
Q 014864          334 -------------NLLS-----GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAI  394 (417)
Q Consensus       334 -------------~ll~-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L  394 (417)
                                   .+|.     .+ ++.+|+.-.-+|.-+|+. ...++.+.+.|+.|.+-.+-+. .++++++.+-...
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRep-dpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREP-DPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCC-ChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence                         3332     22 788999999999999885 4456778888888876555443 4566665544444


Q ss_pred             HHhh
Q 014864          395 SNAT  398 (417)
Q Consensus       395 ~nl~  398 (417)
                      .-+.
T Consensus       311 q~Lv  314 (353)
T KOG2973|consen  311 QMLV  314 (353)
T ss_pred             HHHH
Confidence            3333

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=4.8e-05  Score=65.26  Aligned_cols=272  Identities=14%  Similarity=0.177  Sum_probs=171.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +..+++++++.+|.++..|+..+..+...    ..+.+.  +.-.++.+.+++.... +  -..|+.+|.|++.. ...+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHHH
Confidence            46889999999999999999888877543    222221  3345788999998877 4  67899999999985 6666


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC-----CHHHHHHHhcCCC-c-hhHHHHHHHH
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-----GLVPLLAQLNGQP-K-LSMLRNATWT  225 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g-----~i~~L~~ll~~~~-~-~~~~~~a~~~  225 (417)
                      +.+++. .+..++..+.++...+....+.+|.|++.+...+........     ++..++....+.. + -.-..+.+.+
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            666665 667777777777777888999999999998876665543322     3344444332333 2 1335677778


Q ss_pred             HhhhhcCCCCCChhhhhchH--HHHHHhhcCCChHHHH-HHHHHHHHhccCChHHHHHHHHc--CChHHHH---------
Q 014864          226 LSNFCRGKPQPPFDQVSPAL--PALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVFPRLA---------  291 (417)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~~~~L~---------  291 (417)
                      ++|+++.............+  ..+..+-. .+..++. ..+.+|.|+|......-. +++.  .+++.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence            88888875433333332222  22333333 4555553 456778887755443222 2221  2233222         


Q ss_pred             ------------hhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864          292 ------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (417)
Q Consensus       292 ------------~~l~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (417)
                                  ++|.     .+++.++..-+.+|--+|.... .++.+...|+.|.+..+-+...+++++..+-....-
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                        2332     2467889999999988886554 445577778888777776666466666544444444


Q ss_pred             HhcC
Q 014864          355 ITAG  358 (417)
Q Consensus       355 l~~~  358 (417)
                      +..+
T Consensus       313 Lv~~  316 (353)
T KOG2973|consen  313 LVRL  316 (353)
T ss_pred             HHhc
Confidence            4443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.53  E-value=2.7e-07  Score=55.41  Aligned_cols=41  Identities=41%  Similarity=0.674  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ++++++.+++.|++|.|+++|++++++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.53  E-value=4e-06  Score=81.63  Aligned_cols=311  Identities=15%  Similarity=0.155  Sum_probs=185.6

Q ss_pred             HHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864           78 MVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (417)
Q Consensus        78 l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  155 (417)
                      .++.|.+  .|.+++..|..++..++.... +.... .-..+++.|++-|.+   +..+..|+++++.++...-.....-
T Consensus       573 tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~-eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~  647 (1233)
T KOG1824|consen  573 TLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGN-ELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSP  647 (1233)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhh-hhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhh
Confidence            3444443  467888888888887765432 11111 112246666666664   5678899999999998533332222


Q ss_pred             HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      +-..+++.+..++......++..++.++-.+..... .......+. ++..+..++ ..++..+...+..++..+....|
T Consensus       648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Li-sesdlhvt~~a~~~L~tl~~~~p  725 (1233)
T KOG1824|consen  648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLI-SESDLHVTQLAVAFLTTLAIIQP  725 (1233)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhh-hHHHHHHHHHHHHHHHHHHhccc
Confidence            223577888888887777777777777766653211 111122221 445556666 66778888999999999998877


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHH----hccCChHHHHHHHHcCChHHHHhhcCCCCh-----hhHHHH
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY----LSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-----SVLIPA  305 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~----l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-----~v~~~a  305 (417)
                      .........+++.++.+++++-  ++..++.++..    +........      + ...++.++..+-+     .+-..|
T Consensus       726 s~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kqa  796 (1233)
T KOG1824|consen  726 SSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQA  796 (1233)
T ss_pred             HHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHHH
Confidence            6666666888999999998763  22222222222    211111110      1 3445556654421     233344


Q ss_pred             HHHHHH----hhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864          306 LRTVGN----IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (417)
Q Consensus       306 ~~~L~~----l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~  381 (417)
                      ...++.    ++...+.....+    ....+..+...+.+..++.-|...+|.+-.+-+..    ...++...+++.+.+
T Consensus       797 ~~siA~cvA~Lt~~~~~~s~s~----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~s  868 (1233)
T KOG1824|consen  797 YYSIAKCVAALTCACPQKSKSL----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNS  868 (1233)
T ss_pred             HHHHHHHHHHHHHhccccchhH----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCC
Confidence            444433    333332111111    12233344444436788888999999987642211    123455678888999


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864          382 AEFDIKKEAAWAISNATSGGTHEQIKYEHTF  412 (417)
Q Consensus       382 ~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~  412 (417)
                      ++.+++..|.+||++++.+..+..++.++++
T Consensus       869 p~edvksAAs~ALGsl~vgnl~~yLpfil~q  899 (1233)
T KOG1824|consen  869 PSEDVKSAASYALGSLAVGNLPKYLPFILEQ  899 (1233)
T ss_pred             ChHHHHHHHHHHhhhhhcCchHhHHHHHHHH
Confidence            9999999999999999998888888777653

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=5.8e-05  Score=72.51  Aligned_cols=302  Identities=15%  Similarity=0.152  Sum_probs=187.9

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .+..+-+.|+.+++-++..|++.+..+=    -+.+.-+    ++-.+-+...+.. +-+|..|+.++..+-+-+++...
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence            4556666666667766666666655431    1111111    1233334555566 88999999999998887777766


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .+.     ..+-.+|.+.++.+.-.|+.++-.+|-+.-   +.  -.+....+++++ .+-+.--+..++..|...|+..
T Consensus       180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dL--IHknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DL--IHKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HH--hhHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence            443     445567888889999999999888875432   22  123456677777 4445555556666666666543


Q ss_pred             -CCCCh----------------------------hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc
Q 014864          234 -PQPPF----------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (417)
Q Consensus       234 -~~~~~----------------------------~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (417)
                       +.+..                            .-..-.+...-.+|.+.++.|.-.++.+..+++-..  ...     
T Consensus       249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----  321 (968)
T KOG1060|consen  249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----  321 (968)
T ss_pred             CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----
Confidence             21100                            001224455556778889999999999999987433  222     


Q ss_pred             CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH----------------H---------HHc----CChHHHHHh
Q 014864          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC----------------V---------IEY----QALPCLLNL  335 (417)
Q Consensus       285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~----------------~---------~~~----~~l~~L~~l  335 (417)
                      .+++.|+.+|.++. .++.-.+..|..++...+.....                +         .++    .+++-+...
T Consensus       322 ~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y  400 (968)
T KOG1060|consen  322 KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY  400 (968)
T ss_pred             HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence            24667787776543 34555555555555333211111                1         111    234445555


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864          336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYE  409 (417)
Q Consensus       336 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l  409 (417)
                      +.+. +..+...|..+||.++.....     +...++.-|+.++++.+..|..+++-+|..+......++.+.+
T Consensus       401 I~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii  468 (968)
T KOG1060|consen  401 IKSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEIL  468 (968)
T ss_pred             HhcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence            6666 667888888999998864332     2234677889999999999999999999999988766664444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=4.6e-06  Score=79.88  Aligned_cols=230  Identities=18%  Similarity=0.181  Sum_probs=142.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      +...+...+++.+ +.++..|+-+..++-..+   .+.+.+.|.++.|..++.++++.+...|+.+|..|....+..-..
T Consensus       122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            3677888888888 899999999888887643   455678899999999999999999999999999998666531111


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                      .+..-.+..++..+    +.-.-..-+.++-.++...|... .-...++..+...|.+.+..+...+...+.++......
T Consensus       198 ~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~  272 (734)
T KOG1061|consen  198 ELNPQLINKLLEAL----NECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ  272 (734)
T ss_pred             cccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence            11111233344444    22222233344555555544444 33456677777778888877777777777777655444


Q ss_pred             HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH--------------------------HcC---
Q 014864          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--------------------------EYQ---  327 (417)
Q Consensus       277 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--------------------------~~~---  327 (417)
                      ....+. ..+-+.++.++.... .++--|++-+.-+....+.....-+                          .++   
T Consensus       273 ~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q  350 (734)
T KOG1061|consen  273 VNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ  350 (734)
T ss_pred             HHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence            222222 235667777777666 6666666666655544332111000                          111   


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      ++.-+...-..- +.+..+++.+++++++..
T Consensus       351 vl~El~eYatev-D~~fvrkaIraig~~aik  380 (734)
T KOG1061|consen  351 VLAELKEYATEV-DVDFVRKAVRAIGRLAIK  380 (734)
T ss_pred             HHHHHHHhhhhh-CHHHHHHHHHHhhhhhhh
Confidence            122222222333 677888999999999864

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=1.4e-05  Score=73.77  Aligned_cols=318  Identities=13%  Similarity=0.111  Sum_probs=199.2

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      -++.++..+...|..++..|+..+.+++...+.+...  .-..+...++.+..+++ ..++. ++..+-.+..+-.....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence            4678888888899999999999988887543222221  12345677777777666 44443 33343333331111111


Q ss_pred             -HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       154 -~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                       .+-=.+.+|.|-.-+...++..+...+.-|.-+-.-.+  .+.+-- ...++-|++.+ .+++.+++..+-.+++++..
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             11111345555555555677777766665555533222  233221 12456677777 77888888777777777765


Q ss_pred             CC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChh-hHHHHHHHH
Q 014864          232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRTV  309 (417)
Q Consensus       232 ~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-v~~~a~~~L  309 (417)
                      .- ..+........++.++.-+.++++.++..|+.-+.....-.+.. -...-+|++..+++++.+.++. ++..+...-
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            43 22233355678899999999999999988887777766544332 2344567888899999887763 444443332


Q ss_pred             H---HhhcCChHHHHHHHHc-CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHH
Q 014864          310 G---NIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD  385 (417)
Q Consensus       310 ~---~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~  385 (417)
                      +   .++.... ..+. ++. .++..+...+.++ ..+.|..+..-+..+-...|.+. ......+++.|+.-|++.+.+
T Consensus       317 ~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  317 GLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH
Confidence            2   2221111 1111 222 4567788888888 88999888866666655444433 223567999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCH
Q 014864          386 IKKEAAWAISNATSGGTH  403 (417)
Q Consensus       386 v~~~a~~~L~nl~~~~~~  403 (417)
                      |...++..+.+++...+.
T Consensus       393 vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            999999999999997644

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=3.4e-05  Score=72.39  Aligned_cols=270  Identities=17%  Similarity=0.131  Sum_probs=182.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      ++..|.+-++.+. +.+|.....||..+.......    ......+.+.+++......-+..+.+.++.+..+..  ...
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            4788888999988 899999999888776521111    011345677888888888888899999999887764  345


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-  275 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-  275 (417)
                      +.+.+++..+...+.+..+..-++.+..+.-..+..-.......+...+|.++..+.+..+.++..+..+...+...-+ 
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            5677788888888843333333333444444444333333344556778888888888888898887776665543322 


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (417)
                      ....     .+++.++.-+....|.....++..+|.++...+.+.. ..-..++|.+.+.|.+. ++++|+.+..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            1111     1455555555555888999999999999988887765 45568999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHH------------------------------CC----CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          356 TA--GNREQIQAVIE------------------------------AN----IIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       356 ~~--~~~~~~~~l~~------------------------------~~----~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      +.  .+++ ++.++.                              ..    ++|.|-+-+...+..+++.++..+.|++.
T Consensus       323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            86  4554 322210                              00    12333333334456677888888888877


Q ss_pred             CC
Q 014864          400 GG  401 (417)
Q Consensus       400 ~~  401 (417)
                      -.
T Consensus       402 Lv  403 (569)
T KOG1242|consen  402 LV  403 (569)
T ss_pred             hh
Confidence            65

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.47  E-value=3.2e-05  Score=71.02  Aligned_cols=214  Identities=26%  Similarity=0.336  Sum_probs=158.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      .++.+.+++.+.+ ..++..|++.++.+...           .+++.+..++.+.++.++..++.+|+.+-  .+     
T Consensus        44 ~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~-----  104 (335)
T COG1413          44 AADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DP-----  104 (335)
T ss_pred             hHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence            5888999999987 89999999997776542           57899999999999999999999988872  22     


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh------------HHHHHHH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDAC  264 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~------------~v~~~a~  264 (417)
                          ..++.++.++..+.+..++..+.++|..+-..          ..+..++..+.+...            .++..+.
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence                15788999995578999999999999988764          225556666665442            2444444


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhH
Q 014864          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (417)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  344 (417)
                      ..++.+-.           ...++.+...+.+....++..|..+|+.+....         ..+.+.+...+.+. +..+
T Consensus       171 ~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~v  229 (335)
T COG1413         171 EALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEV  229 (335)
T ss_pred             HHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHH
Confidence            44444321           135678888899998899999999999998765         24457788888888 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (417)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~  395 (417)
                      |..++..|+.+-..           ..++.++..+.+.+..++..+..++.
T Consensus       230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         230 RKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence            99999999988543           12445555666666555555554443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=2.4e-06  Score=81.78  Aligned_cols=299  Identities=15%  Similarity=0.188  Sum_probs=159.2

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  155 (417)
                      ..+.+.++++++.++..|+...+++-    ....+...+.|+++.|..++.+++ +.+...|+.+|..+...++......
T Consensus       124 ~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~~  198 (734)
T KOG1061|consen  124 DPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLLE  198 (734)
T ss_pred             HHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCccc
Confidence            45666778888888888888888875    445666788999999999999777 8999999999999998655311111


Q ss_pred             HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH-HH--HH--------------HhcCCHHHHHHHhcCCCc--h
Q 014864          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-RD--LV--------------LSQGGLVPLLAQLNGQPK--L  216 (417)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-~~--~~--------------~~~g~i~~L~~ll~~~~~--~  216 (417)
                      +....+..++..+..   -.-..-+.+|.+++...+.- ++  .+              ...+.++.+++++...++  .
T Consensus       199 l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~  275 (734)
T KOG1061|consen  199 LNPQLINKLLEALNE---CTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE  275 (734)
T ss_pred             ccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH
Confidence            111222233333321   11122223333333222210 00  00              011223333333322111  1


Q ss_pred             hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH---h---------hcCCC-hHHHHHHHHHHHHhccCChHHHHHHHH
Q 014864          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH---L---------IHSND-DEVLTDACWALSYLSDGTNDKIQAVIE  283 (417)
Q Consensus       217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~---l---------l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (417)
                      .+......-+..+....+...+..+..+--.+.+   +         .+..| ..+...-+.++..++...  +.+.   
T Consensus       276 ~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~--nl~q---  350 (734)
T KOG1061|consen  276 LLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA--NLAQ---  350 (734)
T ss_pred             HHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh--HHHH---
Confidence            2222222222333333222222222111111111   0         01112 223333444444443221  1111   


Q ss_pred             cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (417)
Q Consensus       284 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (417)
                        ++..+...-..-+.+....+++++|+++..-++.      ++.++.|+.++... -..+..+++..+..+....|...
T Consensus       351 --vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~  421 (734)
T KOG1061|consen  351 --VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKY  421 (734)
T ss_pred             --HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCch
Confidence              3444555555667888999999999998654433      57888899998877 66777788888888877655433


Q ss_pred             HHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCC
Q 014864          364 QAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       364 ~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ..     +++.+...+.+ ++++.|....|.++..+..-
T Consensus       422 ~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i  455 (734)
T KOG1061|consen  422 ES-----VVAILCENLDSLQEPEAKAALIWILGEYAERI  455 (734)
T ss_pred             hh-----hhhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence            22     23333333332 46777888888887766653

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.44  E-value=2.3e-06  Score=63.82  Aligned_cols=115  Identities=16%  Similarity=0.131  Sum_probs=100.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      +.+..|+.-.....+.+.+.+...-|.|.+.+ |.+-..+.+.++++.++..|..++..+++.++..|+|+|-+.. ..+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            44666776555554589999999999999996 8888899999999999999999999999999999999998876 678


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .+.+.++++.++..+ .++...+...++.++..|+...
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            899999999999999 7888888999999999999875

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=0.00022  Score=70.76  Aligned_cols=315  Identities=15%  Similarity=0.176  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHH-----HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEV-----IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~-----~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (417)
                      .-...++.+|+++++..  |....+     .--|.++.++.++.....+.++..|+.++..+... .+....+.+.|.+.
T Consensus      1740 ~~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLT 1816 (2235)
T ss_pred             HHHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHH
Confidence            35567899999998763  322222     22366788888887655588999999998887774 78888889889999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC---CCCChh
Q 014864          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFD  239 (417)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~  239 (417)
                      .|+.+|.+ -+..++.++.+|..+++... ......+.|++..++.++..+.++..+..++..+..+..++   |.....
T Consensus      1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred             HHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence            99999975 46788999999999987766 55667889999999999988889999999999999998876   222221


Q ss_pred             hhh-----------chHHHHHHhhcC--CChHH------HHHHHHHHHHhcc--------CC------hHH---------
Q 014864          240 QVS-----------PALPALAHLIHS--NDDEV------LTDACWALSYLSD--------GT------NDK---------  277 (417)
Q Consensus       240 ~~~-----------~~l~~L~~ll~~--~~~~v------~~~a~~~l~~l~~--------~~------~~~---------  277 (417)
                      .+.           ..-...+.++..  ++|++      +...-..+..+..        ++      ++.         
T Consensus      1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred             hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence            111           111223333322  12221      1122222222210        00      000         


Q ss_pred             --------HHHH-HH------------cCChHHHHhhcCCCCh--hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 014864          278 --------IQAV-IE------------AGVFPRLAEFLMHPSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (417)
Q Consensus       278 --------~~~~-~~------------~~~~~~L~~~l~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  334 (417)
                              .+.+ .+            .+.++.+..++..+.+  ........++-.+.+..+...+.+-..|.+|.++.
T Consensus      1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred             CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence                    0011 11            1334455555554432  22233333445556666666666667799999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       335 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      .+... +..+-+.|..+|..++++ .-+...+.....+..++..+... +...--|+.+|..+......+.+...+
T Consensus      2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQML 2127 (2235)
T ss_pred             HHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            99887 777778999999999874 44566666666666677777643 344447888888877754444433333

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.43  E-value=4.9e-07  Score=54.24  Aligned_cols=41  Identities=41%  Similarity=0.863  Sum_probs=38.2

Q ss_pred             CchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 014864          148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (417)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~  188 (417)
                      ++++++.+++.|++|.|+.+|.++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>TIGR02270 conserved hypothetical protein

Probab=98.42  E-value=8e-05  Score=69.07  Aligned_cols=214  Identities=18%  Similarity=0.067  Sum_probs=149.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      .++.++..|.....+.+...+++++.....  +         .++..|+..|.+.++.++..++.+|+.+-.  +     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence            588888999644437777777666643221  1         238899999999999999999999987521  1     


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                          +....|+.++ .+.++.++..++.++....           ....+.+..+|.++++.|+..++.+|+.+...   
T Consensus       117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence                2466788888 7888889988887776622           12356788889999999999999999988532   


Q ss_pred             HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       277 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                              ..++.|...+.+.++.|+..|+.+++.+..  +..         ++.+..+.... ....+..+..++... 
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~-g~~~~~~l~~~lal~-  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLA---------WGVCRRFQVLE-GGPHRQRLLVLLAVA-  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhH---------HHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence                    245667788999999999999999977743  222         33455544443 333444433344333 


Q ss_pred             cCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                       +.+         ..++.|..+++++.  ++..++++++.+-..
T Consensus       237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p  268 (410)
T TIGR02270       237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV  268 (410)
T ss_pred             -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc
Confidence             323         35777888887644  999999999977543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.41  E-value=6.1e-06  Score=61.61  Aligned_cols=126  Identities=18%  Similarity=0.171  Sum_probs=108.5

Q ss_pred             hccCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864           71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (417)
Q Consensus        71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  149 (417)
                      .++-+..|+...+. .+.+.+.+.+..|.+++-.  +-+...+.+.+++..++..|..++ ..+...++..|+|+|.+ +
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~   89 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-K   89 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-h
Confidence            44667778877765 7788899899899998754  456777889999999999999999 89999999999999996 8


Q ss_pred             hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhc
Q 014864          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~  200 (417)
                      .+.+.+++.+++|.++..+.++.......++.++..++......++.+..-
T Consensus        90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p  140 (173)
T KOG4646|consen   90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP  140 (173)
T ss_pred             HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence            899999999999999999999999999999999999997777677776544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.39  E-value=7.5e-07  Score=57.53  Aligned_cols=55  Identities=24%  Similarity=0.605  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      +.+|..|+|+|++++...++....... .+++.|+.+|.+++..||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998887877776544 7999999999999999999999999975

...

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=0.00067  Score=67.54  Aligned_cols=319  Identities=13%  Similarity=0.193  Sum_probs=202.8

Q ss_pred             hccCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864           71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (417)
Q Consensus        71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  149 (417)
                      -++.++-+...+.+ .++.+|..|+..+..+.+.  .+....+...|++..|+.+|.+.  |..+..++.+|..+++. +
T Consensus      1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred             hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence            44667777777775 7889999999998877543  57788899999999999999875  68999999999999985 6


Q ss_pred             hhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---chHHHHHHh----------cCCHHHHHHHhcCC-C
Q 014864          150 EHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS---PRCRDLVLS----------QGGLVPLLAQLNGQ-P  214 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~---~~~~~~~~~----------~g~i~~L~~ll~~~-~  214 (417)
                      +......+.|++..+..++. +.++..+.+++..++.+..+.   |..+-.++.          .+.-+..+..+... .
T Consensus      1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred             HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence            66677777788877777664 577889999999999997542   222111111          01123444444221 1


Q ss_pred             chh------HHHHHHHHHhhhhcC-------CCCC--------------------------------------Chhhhhc
Q 014864          215 KLS------MLRNATWTLSNFCRG-------KPQP--------------------------------------PFDQVSP  243 (417)
Q Consensus       215 ~~~------~~~~a~~~l~~l~~~-------~~~~--------------------------------------~~~~~~~  243 (417)
                      +++      .+......+..+...       .|..                                      +.....+
T Consensus      1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence            222      222222222222210       0110                                      1112234


Q ss_pred             hHHHHHHhhcCCChH--HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          244 ALPALAHLIHSNDDE--VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       244 ~l~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      .+..+.+++..++++  ...-.-.++..|....+...+.+-.-|.+|.++..+...+..+-..|++.|-.++...- ...
T Consensus      2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCD 2082 (2235)
T ss_pred             HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHH
Confidence            555566666544322  22222233444444555555666667999999999988877777889999988886543 333


Q ss_pred             HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccC-------CHHHHHHHHHH
Q 014864          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWA  393 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~-------~~~v~~~a~~~  393 (417)
                      .+.....+..+++.+..  .+...--||-+|..+.. ...+-..+..+.|++|.|+.+|+..       ....+.+...+
T Consensus      2083 AMA~l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~a 2160 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDA 2160 (2235)
T ss_pred             HHhccccchhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHH
Confidence            34444555567777654  34455588888888875 4455666777899999999999642       23445555555


Q ss_pred             HHHh
Q 014864          394 ISNA  397 (417)
Q Consensus       394 L~nl  397 (417)
                      |...
T Consensus      2161 Lk~~ 2164 (2235)
T KOG1789|consen 2161 LKSA 2164 (2235)
T ss_pred             HHHH
Confidence            5443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.37  E-value=6.7e-06  Score=70.94  Aligned_cols=188  Identities=17%  Similarity=0.102  Sum_probs=120.3

Q ss_pred             cCCChHHHHHHHHHHHHhhhCC-CCCcHHHHHH--hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC
Q 014864           83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (417)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  159 (417)
                      .+.|+..+..|+..|+.++.+. .......+..  ..++..+...+++.. ..+...|+.++..++..-........+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            5689999999999999998764 1122222221  155667777777766 789999999999998865444555544 6


Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC-CCh
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPF  238 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~-~~~  238 (417)
                      .+|.|+..+.++...+++.|..+|..++...+.....     .+..+...+ .+.++.++..++..+..+....+. ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            7899999999999999999999999999766511111     123344444 888999999999999888876541 111


Q ss_pred             ----hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014864          239 ----DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI  278 (417)
Q Consensus       239 ----~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  278 (417)
                          .....+++.+..++.+.+++|+..+-.++..+....++..
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence                1235688889999999999999999888888865444443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.37  E-value=2.4e-05  Score=67.25  Aligned_cols=224  Identities=15%  Similarity=0.188  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHH-hCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHH-HhcCCHHHH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLV-LSQGGLVPL  206 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~-~~~g~i~~L  206 (417)
                      +-.+.-|+.|+.++... ++.+..+- +...-..++.+++.  +...++.+.+.+++-++.... +.+.+ --...+..+
T Consensus       163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence            56788899999999886 66665544 44455677777775  567899999999998876654 33222 122346677


Q ss_pred             HHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh--hh-hchHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh------
Q 014864          207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QV-SPALPALAHLIHS--NDDEVLTDACWALSYLSDGTN------  275 (417)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~-~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~------  275 (417)
                      +++......+.+.+-++..+.|++...|.....  .. ..+.++...++..  .|+++..+.-..=..|.....      
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            777766667889999999999999854332221  12 3344544444432  356555443332222211100      


Q ss_pred             ------------------------HHHHHHHHc--CChHHHHhhcCCCChh-hHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864          276 ------------------------DKIQAVIEA--GVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (417)
Q Consensus       276 ------------------------~~~~~~~~~--~~~~~L~~~l~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~  328 (417)
                                              .+...+.+.  .++..|..+++.+++. ...-||.-|+.+....++....+.+.|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence                                    112233322  4577888999888766 5677999999999999999998889999


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      -..++.+++++ +++||.+|..++-.+..
T Consensus       401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         401 KEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            99999999999 99999999998877654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.35  E-value=0.0002  Score=67.75  Aligned_cols=255  Identities=16%  Similarity=0.138  Sum_probs=170.2

Q ss_pred             CcHHHHHHhCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCC-----C
Q 014864          107 PPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP-----S  172 (417)
Q Consensus       107 ~~~~~~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~  172 (417)
                      ...+.+.....+..|..+-         ....++.+..+|++||+|+...++..++.+++.|..+.++..|+..     +
T Consensus        13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~   92 (446)
T PF10165_consen   13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP   92 (446)
T ss_pred             ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence            3445555555566666655         2233489999999999999999999999999999999999999875     7


Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHhc-CCHHHHHHHhcC---------C-------CchhHHHHHHHHHhhhhcCCCC
Q 014864          173 DDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLNG---------Q-------PKLSMLRNATWTLSNFCRGKPQ  235 (417)
Q Consensus       173 ~~i~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~---------~-------~~~~~~~~a~~~l~~l~~~~~~  235 (417)
                      .++.-.....|--++...+..+..+.+. +++..++..+..         .       .+......++.++.|+....+.
T Consensus        93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~  172 (446)
T PF10165_consen   93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK  172 (446)
T ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence            7888888888888887777777666554 666666665521         0       2445677888899999887644


Q ss_pred             CChhh----hhchHHHHHHhh---cCC--ChHHHHHHHHHHHHhccCChHHH-----------HHHHHcCChHHHHhhcC
Q 014864          236 PPFDQ----VSPALPALAHLI---HSN--DDEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       236 ~~~~~----~~~~l~~L~~ll---~~~--~~~v~~~a~~~l~~l~~~~~~~~-----------~~~~~~~~~~~L~~~l~  295 (417)
                      .....    ...+++.+..++   ..+  .......++.+|.++--......           ........+..|+.+|.
T Consensus       173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld  252 (446)
T PF10165_consen  173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD  252 (446)
T ss_pred             ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence            43322    234444444442   111  24567777888887732111110           00011134556666654


Q ss_pred             C----C----ChhhHHHHHHHHHHhhcCChHHHHHHHH----------------cCChHHHHHhhcCCCchhHHHHHHHH
Q 014864          296 H----P----SPSVLIPALRTVGNIVTGDDMQTQCVIE----------------YQALPCLLNLLSGNYKKSIKKEACWT  351 (417)
Q Consensus       296 ~----~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~~v~~~a~~~  351 (417)
                      .    .    -.....+.+..|.+++..+...++.+..                ..+-..|++++.+. .+.+|..+...
T Consensus       253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael  331 (446)
T PF10165_consen  253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL  331 (446)
T ss_pred             HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence            2    1    1356788999999999887655554432                24456799999998 69999999999


Q ss_pred             HHHHhcCCHHH
Q 014864          352 VSNITAGNREQ  362 (417)
Q Consensus       352 L~nl~~~~~~~  362 (417)
                      |..+|..+...
T Consensus       332 lf~Lc~~d~~~  342 (446)
T PF10165_consen  332 LFVLCKEDASR  342 (446)
T ss_pred             HHHHHhhhHHH
Confidence            99998765543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=4.5e-05  Score=71.81  Aligned_cols=225  Identities=16%  Similarity=0.143  Sum_probs=148.6

Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHH---HHHhhhhcCC---CC
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQ  235 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~---~~l~~l~~~~---~~  235 (417)
                      ..|..+..+.+..++.+|+.+|..|..... ..+.     .....++++ .+.+..++..|+   |+++|.+-.+   ..
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            337777777888888888888877765322 2222     345566777 777788887774   5555555222   11


Q ss_pred             CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC------------------------------
Q 014864          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG------------------------------  285 (417)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~------------------------------  285 (417)
                      ........++..+...+.+-...|+..|+.+|+.+...+++.+...++..                              
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence            12233356677777777777777888888888777655554443333322                              


Q ss_pred             --------------------ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864          286 --------------------VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK  345 (417)
Q Consensus       286 --------------------~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  345 (417)
                                          ....++.-|.+.-.+||.+|+..++.++...+....     ..+..|+.+++++ ...||
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VR  427 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVR  427 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHH
Confidence                                223333333333347899999999999988875544     3578899999998 99999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      ..|..+|..|+..      ..++...++.++..|.+..+++|..+-..|++.-.. +.+.+
T Consensus       428 L~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~-d~~~i  481 (823)
T KOG2259|consen  428 LKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVS-DLECI  481 (823)
T ss_pred             HHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-cHHHH
Confidence            9999999999764      112334577778888888888888887777765332 44433

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.4e-05  Score=73.32  Aligned_cols=202  Identities=14%  Similarity=0.131  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcC
Q 014864          176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS  254 (417)
Q Consensus       176 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~  254 (417)
                      ...++.+|-.++..-...|.-+....+.+.|+++| +.++..+...+...++|+.-.. +-.......+++..+++++.+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            34455566666666666777888888999999999 6677666777777777777654 333344558899999999999


Q ss_pred             CChHHHHHHHHHHHHhccCChHHHH-HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChH---HHHHHHHc----
Q 014864          255 NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----  326 (417)
Q Consensus       255 ~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~----  326 (417)
                      .|..++.+..|.+.++..+.++..+ ..+..-.+..++.+..++.+.++..++..+.|+.+.+..   ..+.+++.    
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~  564 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR  564 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence            9999999999999999877654422 244555789999999999999999999999999875443   12211111    


Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHh
Q 014864          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALL  379 (417)
Q Consensus       327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~~l  379 (417)
                      -+...+++.+... +|-.-.+.|+.|.++++.+....+.+++ ..++..+.++|
T Consensus       565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            2345667777777 7777778899999999866554444443 34444444444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.00013  Score=67.57  Aligned_cols=232  Identities=16%  Similarity=0.095  Sum_probs=154.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh---CCCchH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA---GDSPRC  193 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~---~~~~~~  193 (417)
                      ++|.|-+-+...+ +..|...+.-|..+-.. |.....-.-...++.|..+|.+++++++..+-.+++++-   ..+|..
T Consensus       168 ~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  168 FIPLLRERIYVIN-PMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHhcCC-chHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            4555544444455 67777666655555443 222111111256788899999999999988888777764   222321


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChH-HHHHHHHH---HHH
Q 014864          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE-VLTDACWA---LSY  269 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~~---l~~  269 (417)
                      -   --...++.++..+ +++++.++..|+.-+..+..-.+..-.....+++..+++++.++++. +...+...   +..
T Consensus       246 ~---d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  246 M---DYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             c---Ccccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            1   1123567777777 78889999888777777776656656666688888888888777653 43333222   222


Q ss_pred             hccCChHHHHHHHHc-CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHH
Q 014864          270 LSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (417)
Q Consensus       270 l~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  348 (417)
                      ++...... +. ++. .+++.+...+.++..+.+..++.-+..+-...+.+.- .....+.+.|++-|.+. +..|...+
T Consensus       322 l~s~~~~~-~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~-sd~vvl~~  397 (675)
T KOG0212|consen  322 LVSSERLK-EE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDR-SDEVVLLA  397 (675)
T ss_pred             HHhhhhhc-cc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCc-hhHHHHHH
Confidence            22211111 11 222 3678888889999999999999999888877765543 45668889999999998 99999999


Q ss_pred             HHHHHHHhcC
Q 014864          349 CWTVSNITAG  358 (417)
Q Consensus       349 ~~~L~nl~~~  358 (417)
                      ...+.++|..
T Consensus       398 L~lla~i~~s  407 (675)
T KOG0212|consen  398 LSLLASICSS  407 (675)
T ss_pred             HHHHHHHhcC
Confidence            9999999974

>PF05536 Neurochondrin: Neurochondrin

Probab=98.24  E-value=0.00021  Score=69.15  Aligned_cols=238  Identities=19%  Similarity=0.175  Sum_probs=163.1

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH---HHHHHhcCCHHHHHHHhcCC------CchhHHHHHHHHHhhhh
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFC  230 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~ll~~~------~~~~~~~~a~~~l~~l~  230 (417)
                      .+...+.+|++.+++-+-.++..+.+++..++..   ++.+.+.=+...+-++|...      +....+.-++.+|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4566778888877777888888889988765532   23455555566677777331      33567788999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                      ..+.........+-+|.|+..+.+.+. .+...++.+|..++..++ ..+.+++.|.++.|...+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            965555556667889999999987766 999999999999995554 45678999999999999988 556788899999


Q ss_pred             HHhhcCChHHHHH---HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHH----HHHCCCHHHHHHHhcc
Q 014864          310 GNIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQA----VIEANIIGPLVALLEN  381 (417)
Q Consensus       310 ~~l~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~----l~~~~~i~~L~~~l~~  381 (417)
                      .+++.........   -.-..+++.+...+... ....+.+.|..|+++....+.. ...    -+-..+...+..++.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            8887655421100   01124556677777666 6677889999999998754211 111    1122344555566665


Q ss_pred             C-CHHHHHHHHHHHHHhhCC
Q 014864          382 A-EFDIKKEAAWAISNATSG  400 (417)
Q Consensus       382 ~-~~~v~~~a~~~L~nl~~~  400 (417)
                      . .+.-|..++.....+...
T Consensus       243 r~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            4 455666666665555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.23  E-value=6.1e-05  Score=75.61  Aligned_cols=267  Identities=15%  Similarity=0.146  Sum_probs=173.0

Q ss_pred             HHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC----c
Q 014864           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT----S  149 (417)
Q Consensus        75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~----~  149 (417)
                      ++.+...+.+ ...+.+..|+..|..+..--    .++..-..++|.++.++.++. .++|..|+.+|+.+...-    +
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4555556655 56778888988888775322    122223456999999999998 899999999998876621    2


Q ss_pred             hhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------------------chH-----------HHHHHh
Q 014864          150 EHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLS  199 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~------------------~~~-----------~~~~~~  199 (417)
                      .....+.+ =++|.|-+++.+ ....++..-+..|+.+|...                  +..           ...+. 
T Consensus       499 ~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-  576 (1431)
T KOG1240|consen  499 SDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-  576 (1431)
T ss_pred             ccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-
Confidence            22222332 467888888877 33334444444444443211                  100           00000 


Q ss_pred             cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014864          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (417)
Q Consensus       200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  279 (417)
                      . .+..++.-|..++++-+++..+..|.-||.-..  ......-+++.|..+|++.|..++..-...+..++..-.-   
T Consensus       577 ~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---  650 (1431)
T KOG1240|consen  577 H-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---  650 (1431)
T ss_pred             H-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence            1 233333333356667777887777877776421  1112245688999999999999988877777766543211   


Q ss_pred             HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      .-++..++|.|.+-|.+..+.|...|+.++..++...--....+.  .+++....+|-++ +..+|..++..+..++.
T Consensus       651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            113445789999999999999999999999999865443332232  3566777888899 99999999999888875

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00093  Score=63.78  Aligned_cols=300  Identities=14%  Similarity=0.131  Sum_probs=178.3

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      +..+.+.|.|.|+.-+..|+.++.++.+.+   ....+ ..+ ++   .+|-+++ .+-++..|+-||..+-..+|+.. 
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-~~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~-  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-ADD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-hhh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence            345555666777777888888888775432   22222 122 33   4444433 25688889999999988766432 


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc------------CCCchhHHHH
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN------------GQPKLSMLRN  221 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~------------~~~~~~~~~~  221 (417)
                        -..+....++++|++.+-.+...+...+--|+...++.....+-. ++..|..+..            .-+.|-++..
T Consensus       184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence              223567889999998888888888888888886655432221110 1222222221            1134556677


Q ss_pred             HHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC----C---hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864          222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN----D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (417)
Q Consensus       222 a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~----~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l  294 (417)
                      ++..|.++-.............++..++...+.+    +   ......++.-.-+++.+-+..-+.+.  ..+..|-+++
T Consensus       261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl  338 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL  338 (938)
T ss_pred             HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence            7777766622111111222233444444333321    1   11222233333333332222222222  2578899999


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHH
Q 014864          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIG  373 (417)
Q Consensus       295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~  373 (417)
                      .+.+..+|-.|+..+..+++..... +.+-.+  .+.++..|+...+..+|+.|+-.|-.+|.. +..        .++.
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak--------~IV~  407 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK--------QIVA  407 (938)
T ss_pred             hcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH--------HHHH
Confidence            9999999999999999999875533 223333  778899999655999999999999999873 332        2456


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          374 PLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       374 ~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      .|++.|...++.+|++...=+.-++.
T Consensus       408 elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  408 ELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            77888888888888776655544443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.22  E-value=5e-06  Score=59.73  Aligned_cols=87  Identities=29%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       118 i~~Lv~lL-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      +|.|++.| ++++ +.++..++++|+.+..  +         .+++.|+.+++++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 6666 9999999999995432  1         45899999999999999999999999882         


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~  227 (417)
                        ....++.|.+++.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12278899999966667777888888874

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.9e-05  Score=73.08  Aligned_cols=239  Identities=18%  Similarity=0.225  Sum_probs=149.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      +...|.+.|++.+++.++.-++--|+-..-++...       ...+.+-..|..++.-.-+.|..++|-+.-++.. .  
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~--  483 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-Q--  483 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-H--
Confidence            45666666666665666666665555544443221       2234455556555555556666666655433321 1  


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH--HhccCC
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT  274 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~--~l~~~~  274 (417)
                          .+++.++......++..+++-..-.++-...+..       ..+=+.+-+++.+.|+-++...+.++.  +...++
T Consensus       484 ----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq-------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn  552 (929)
T KOG2062|consen  484 ----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ-------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN  552 (929)
T ss_pred             ----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh-------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence                1345556655444566666554443333332211       133355667778888888877765544  333333


Q ss_pred             hHHHHHHHHcCChHHHHhh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                      .         +++..|+.+ .++.+.+|+..|+-+||-++..++++         +|..+.+|..++++.||..++.+|+
T Consensus       553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG  614 (929)
T KOG2062|consen  553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG  614 (929)
T ss_pred             h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence            2         356777777 56778999999999999999888765         5667888887779999999999999


Q ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      -.|+|+...-       .+..|-.+..+...-||+.|+.++.-+....
T Consensus       615 IaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  615 IACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             hhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence            9998644321       2333334445666778999988888776654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.19  E-value=0.00047  Score=58.10  Aligned_cols=243  Identities=20%  Similarity=0.282  Sum_probs=152.6

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhH
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  163 (417)
                      +....-++.|+..|+++....   .         +..+.+...+++ .-.+.+.+.+|+.....           .+++.
T Consensus        16 s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~   71 (289)
T KOG0567|consen   16 SQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPV   71 (289)
T ss_pred             cHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHH
Confidence            344567778888888876421   1         444445445444 56677788888876653           57888


Q ss_pred             HHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC--------
Q 014864          164 FVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--------  233 (417)
Q Consensus       164 L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~--------  233 (417)
                      |+..|..  ..+-++..|..+|+++. . +.         .++.+-+.. +++-..+...+..++..+-...        
T Consensus        72 l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~  139 (289)
T KOG0567|consen   72 LVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS  139 (289)
T ss_pred             HHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence            8887765  55778888999998885 2 21         344444555 5666666666666665554322        


Q ss_pred             -------CCCChhhhhchHHHHHHhhcC-CChHH-HHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHH
Q 014864          234 -------PQPPFDQVSPALPALAHLIHS-NDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (417)
Q Consensus       234 -------~~~~~~~~~~~l~~L~~ll~~-~~~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~  304 (417)
                             |.++  .....+.-+-..|.+ ..+.. +..++..|.|+  +.++         .+..|++-+..++.-.|..
T Consensus       140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Ee---------aI~al~~~l~~~SalfrhE  206 (289)
T KOG0567|consen  140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEE---------AINALIDGLADDSALFRHE  206 (289)
T ss_pred             CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHH---------HHHHHHHhcccchHHHHHH
Confidence                   1111  112223334333332 22332 34455555554  2222         2455666677778888999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE  383 (417)
Q Consensus       305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~  383 (417)
                      +..++|.+-+..           .+|.|.+.|.+. .++.||.+|+.+|+.++.  ++         .++.|.+.+.+.+
T Consensus       207 vAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  207 VAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence            999999886432           366677766543 378999999999999975  33         4567778888888


Q ss_pred             HHHHHHHHHHHHHh
Q 014864          384 FDIKKEAAWAISNA  397 (417)
Q Consensus       384 ~~v~~~a~~~L~nl  397 (417)
                      +-|++.+..+|.-+
T Consensus       265 ~vv~esc~valdm~  278 (289)
T KOG0567|consen  265 RVVRESCEVALDML  278 (289)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.18  E-value=0.00016  Score=69.97  Aligned_cols=235  Identities=19%  Similarity=0.155  Sum_probs=157.7

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc--HHHHHHhCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI  144 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~~l  144 (417)
                      ..+.+.+..|++.+.+-++.++-.+.+++...+...  .+.+.+.-+.+.+-.+|.+..      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            457889999999888888999999999987542111  223666666788888888732      256788888999999


Q ss_pred             hCCCchhH--HHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHH
Q 014864          145 ASGTSEHT--KVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (417)
Q Consensus       145 ~~~~~~~~--~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~  221 (417)
                      +.. ++..  ..++  +-||.|+..+.+.+. .+...|..+|..++ ..+..++.+++.|+++.|...+.+  .+.....
T Consensus        85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~  158 (543)
T PF05536_consen   85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEI  158 (543)
T ss_pred             cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence            884 4432  3334  579999999987666 99999999999999 445578899999999999999944  5566778


Q ss_pred             HHHHHhhhhcCCCCC----ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH-HHHHHHc----CChHHHHh
Q 014864          222 ATWTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEA----GVFPRLAE  292 (417)
Q Consensus       222 a~~~l~~l~~~~~~~----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~----~~~~~L~~  292 (417)
                      ++.++.+++......    .......+++.+...+...........|..|..+....+.. .......    .+...+..
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            888888877654321    12222455566666666555666677777777776544210 0111111    23344455


Q ss_pred             hcCCC-ChhhHHHHHHHHHHhh
Q 014864          293 FLMHP-SPSVLIPALRTVGNIV  313 (417)
Q Consensus       293 ~l~~~-~~~v~~~a~~~L~~l~  313 (417)
                      +|++. .+.-|.+++...+.+.
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHH
Confidence            55543 3555666665555554

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=6.4e-05  Score=77.14  Aligned_cols=315  Identities=11%  Similarity=0.102  Sum_probs=180.3

Q ss_pred             HHHHhhhcCCChHHHHHHH-HHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCchhHH
Q 014864           76 PVMVAGVWSNDSGVQYECT-TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTK  153 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~  153 (417)
                      ..+...+.+.+|+.+..++ |.|.-+-.-...+.+ ......+...+..+|.+.+ +-.|.-|.+-|+-+-. ++...++
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v-~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~  898 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEV-VLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK  898 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh-hhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence            4445566788888877664 444322111112222 2223445688999999888 7788888776665433 2233344


Q ss_pred             HHHhCCChhHHHHhhCC-----CCHHHHHH-------------HHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864          154 VVIDHGAVPIFVKLLYS-----PSDDVREQ-------------AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~-----~~~~i~~~-------------a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  215 (417)
                      .+++ +.+..|..-=.+     .+.++.+.             .-.-|+|||++-..       -..+-.++++.+.+-.
T Consensus       899 ~LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~LAnh~A~  970 (1702)
T KOG0915|consen  899 SLVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQLANHNAT  970 (1702)
T ss_pred             HHHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHHHhhhhch
Confidence            3333 233333220000     12222211             22234555533210       0123345566644445


Q ss_pred             hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~  295 (417)
                      ..-+.-|+..+..++..............+|.|.+.=.++|..|+......=.-|...+...+...... ++.-|+.-+.
T Consensus       971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL~~lt 1049 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNE-ILDELLVNLT 1049 (1702)
T ss_pred             hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHhcc
Confidence            666677777788877765444444456677777777677888887554444444555545555555554 8888999999


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH---HHHHHHHHhc--C---CHHHHHHHH
Q 014864          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE---ACWTVSNITA--G---NREQIQAVI  367 (417)
Q Consensus       296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~---a~~~L~nl~~--~---~~~~~~~l~  367 (417)
                      +..|.+|+.+|.+|..+..+.+.....-.-..+...++..+++- .+.||+.   ++.+|+.++.  +   ++..-+.++
T Consensus      1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l 1128 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL 1128 (1702)
T ss_pred             chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH
Confidence            99999999999999999998773221111114566677777776 7778865   4556666664  1   111122222


Q ss_pred             HCCCHHHHHHH-hccCCHHHHHHHHHHHHHhhCCCCH
Q 014864          368 EANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       368 ~~~~i~~L~~~-l~~~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      + .++|.|++- +-+.-.++|..++.++..++.+...
T Consensus      1129 ~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1129 D-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred             H-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence            2 345544431 1145678999999999999887643

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.17  E-value=0.00025  Score=61.18  Aligned_cols=231  Identities=16%  Similarity=0.162  Sum_probs=148.1

Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC-CHHHHHHHhcCCC-chhHHHHHHHHHhhhhcCCCCC-Chhhhhc
Q 014864          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQP-PFDQVSP  243 (417)
Q Consensus       167 ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~~~-~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~  243 (417)
                      +++.-++-.+..|+.++.++..... .|+..-..+ .-..++.++..+- +.+++.+.+.+++.++..+.-. .......
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d  235 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444456677889999999987765 555544333 4455666664333 5788999999999888764211 1122234


Q ss_pred             hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHhhcCCC---ChhhHHHHHHHHHHhhcC---
Q 014864          244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTG---  315 (417)
Q Consensus       244 ~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~l~~~---  315 (417)
                      .+.-++.++... ...|..-+|..+.++++.. .+.+..+.-.|-+..-++.|...   +.+++...=++=+.+...   
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            455566666544 5677888899999998733 34444344344344445555432   333322211111111110   


Q ss_pred             ------------------Ch---------HHHHHHH--HcCChHHHHHhhcCCCchh-HHHHHHHHHHHHhcCCHHHHHH
Q 014864          316 ------------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKKS-IKKEACWTVSNITAGNREQIQA  365 (417)
Q Consensus       316 ------------------~~---------~~~~~~~--~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~nl~~~~~~~~~~  365 (417)
                                        ++         ...+.+.  +..++..|.+++++. .+. .-.-||.-++.+....|+.+..
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~v  394 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAV  394 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHH
Confidence                              00         1222222  235678899999988 555 5567888899999888999998


Q ss_pred             HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      +...|+=..++++++++|++|+.+|+.++.-+..
T Consensus       395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999987765

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.16  E-value=6e-06  Score=59.31  Aligned_cols=87  Identities=30%  Similarity=0.481  Sum_probs=70.6

Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864          245 LPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (417)
Q Consensus       245 l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  323 (417)
                      +|.|++.+ .++++.++..++++|+.+.   +.        .+++.|+.++.++++.++..|+++|+.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888888 7889999999999999552   11        25788999999999999999999999883          


Q ss_pred             HHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                       ....++.|..++.++.+..+|..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12468889999988746677999999885

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.0033  Score=63.10  Aligned_cols=314  Identities=15%  Similarity=0.118  Sum_probs=180.2

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .+..+++.+.+.|..++..|++.+.++.+..+....+++     +...++++...+.+..-..++-+|..++...----.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~v-----i~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQV-----IGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHH-----HHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            456777778889999999999999999876532223333     555555655544456677899999999874211111


Q ss_pred             HHHhCCChhHHHHhhC--------CCCHHHHHHHHHHHHHhhCCCchH-HHHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864          154 VVIDHGAVPIFVKLLY--------SPSDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATW  224 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~--------~~~~~i~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~  224 (417)
                      .+.  .++|.++.-|.        +....|++.|+++++.++...... -+.+.. .....|+....-+.+..+++.|..
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            111  34555555442        134679999999999998543321 111111 122233332224567788888888


Q ss_pred             HHhhhhcCCCCCChh---------------------------hhhchHHHHHH-hh----cCCChHHHHHHHHHHHHhcc
Q 014864          225 TLSNFCRGKPQPPFD---------------------------QVSPALPALAH-LI----HSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       225 ~l~~l~~~~~~~~~~---------------------------~~~~~l~~L~~-ll----~~~~~~v~~~a~~~l~~l~~  272 (417)
                      ++-......++.+..                           ...+....+++ ++    .+=|+.+++.++++|..|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            887655442222110                           01122222222 22    23388999999999999986


Q ss_pred             CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH---HHHH---HcC---ChHH-HHHhhcCCCch
Q 014864          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT---QCVI---EYQ---ALPC-LLNLLSGNYKK  342 (417)
Q Consensus       273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~---~~~---~l~~-L~~ll~~~~~~  342 (417)
                      ..++    ....++++.+++...+.+...+.-+..+.|.+..+.....   ..+.   -++   .++. ....+..+...
T Consensus       574 ~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~  649 (1133)
T KOG1943|consen  574 TEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT  649 (1133)
T ss_pred             hhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence            6554    3344678888888888887777666666665553322111   0000   012   1222 22223322123


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      -.+...+..+-++....+...+..+..+.-..+.+.+..++ .+|..|.++++.++..
T Consensus       650 lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  650 LMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST  706 (1133)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence            45556667777776654443333333344445555554445 7888888888887653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.13  E-value=2.7e-05  Score=67.19  Aligned_cols=183  Identities=16%  Similarity=0.178  Sum_probs=118.0

Q ss_pred             cCCCchhHHHHHHHHHhhhhcCC-CCCChhhh----hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864          211 NGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV----SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (417)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (417)
                      ..+.+.+.+..++..|..++.+. +.......    ..+++.+...+.+....+...+|.++..++..-........+. 
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~-   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI-   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH-
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-
Confidence            36678889999999999998876 22222222    3344566677776678899999999999886544334444433 


Q ss_pred             ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH---HH
Q 014864          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR---EQ  362 (417)
Q Consensus       286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~---~~  362 (417)
                      ++|.|+..+.++...++..|..+|..++........ +    .++.+...+.+. ++.+|..++..+..+....+   ..
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence            789999999999999999999999999976661111 1    145677777877 99999999999999987544   21


Q ss_pred             HHHH-HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          363 IQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       363 ~~~l-~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ...- .-..+++.+...+.+++++||..|-.++..+...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            1110 0134788889999999999999999999888654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.12  E-value=0.00019  Score=72.17  Aligned_cols=272  Identities=15%  Similarity=0.140  Sum_probs=172.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC---CCchH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG---DSPRC  193 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~---~~~~~  193 (417)
                      +++.+...+.+-...+.+..|+..|..++......  ..++ -++|.++.++.++...|+..|+.+|..+..   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            35566666555444678999999999988743222  1222 578999999999999999999999988763   22222


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc------------------CCCCC------Ch----hhhhchH
Q 014864          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR------------------GKPQP------PF----DQVSPAL  245 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~------------------~~~~~------~~----~~~~~~l  245 (417)
                      -..+...-.+|.|-.++.++....++...+..|..|+.                  ..++.      ..    ......+
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence            23334444666666777443444444444444444431                  11111      00    1112222


Q ss_pred             -HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014864          246 -PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI  324 (417)
Q Consensus       246 -~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  324 (417)
                       ..+..++..+++-|+...+..|.-||.--..   .--+.-+++.|+.+|.+.|+.+|..-...|.-++..-..+   -.
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~  653 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV  653 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence             3345566666777877777777777631100   0001126788999999999998887777776554322211   13


Q ss_pred             HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       325 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ++.++|.|..-|.+. .+.|...|..+|.-++...--....+.  .+++...-+|-+++..+|..++..|..++..
T Consensus       654 seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             HHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            456799999999999 999999999999999873221222222  3566666677889999999999998877654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.00035  Score=65.03  Aligned_cols=280  Identities=13%  Similarity=0.079  Sum_probs=150.9

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhH
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  163 (417)
                      +.-..++..+++.+..+....   ...++++. .+..|-.+|+++. ...|+.|.++|..++-..|+...     -+=+-
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~-~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-----vcN~e  344 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEEN---VGSQFVDQ-TVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-----VCNKE  344 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHhc---cCHHHHHH-HHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-----ecChh
Confidence            334667777777777664321   11222221 3666777777777 77888888888888775554321     11122


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc
Q 014864          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (417)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  243 (417)
                      +-.++.+.+..+...|+.+|..-  +..+..+.+     +..+..++ .+-+..+..-+..++..||...|......   
T Consensus       345 vEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s~---  413 (898)
T COG5240         345 VESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLSY---  413 (898)
T ss_pred             HHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHHH---
Confidence            33445555555555555544332  222222222     22222222 22233444455555666665544433332   


Q ss_pred             hHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014864          244 ALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (417)
Q Consensus       244 ~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~  322 (417)
                       +..|...| +...-+...++..++..+....++..+.     ++..|..++.+..  .-.-++++|+-+....+.... 
T Consensus       414 -l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~-  484 (898)
T COG5240         414 -LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREGPRAKT-  484 (898)
T ss_pred             -HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC-
Confidence             33333333 3446677778888888777766554432     3455666665543  122344555555443331110 


Q ss_pred             HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                        -...+..+.+-+--. +.-+|..|..+|+.++-.-.+   .+....+...|-+++.+.|.++|..|..+|.++-.
T Consensus       485 --P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         485 --PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             --cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence              011233344433334 678999999999888763211   11112345677889999999999999999999854

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0011  Score=64.23  Aligned_cols=287  Identities=14%  Similarity=0.147  Sum_probs=183.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      -..|..+|.|+....+..|.+.+..+.....+  .     +..+|..++...+.+ .+++..+.--|...+...+...  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--  106 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--  106 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence            46789999999889999999888877655322  2     335899999999988 8999999888888888655432  


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      +   --|..+-+-|+++|+.++..|+.+|..|=..       ++.-=.+-.+-++. .++.+.+++.|+.++-.|-.-.+
T Consensus       107 L---LSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~  175 (968)
T KOG1060|consen  107 L---LSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDP  175 (968)
T ss_pred             e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCCh
Confidence            1   2477888999999999999999998876211       11000112222333 67889999999999999987755


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      ....    ..+..+-.+|.+.++.|...|+.+.-.+|-..-+.+     ++-...+..+|.+-+.--+.-.+..|...+.
T Consensus       176 e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  176 EQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             hhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence            4332    456667777888899999999999888774433222     2345667777766554445555555555542


Q ss_pred             CC---hHHHHHHH----------------------Hc---CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864          315 GD---DMQTQCVI----------------------EY---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (417)
Q Consensus       315 ~~---~~~~~~~~----------------------~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (417)
                      ..   +.......                      +.   -++...-.+|++. ++.|...++.+.-.++-.+  +.   
T Consensus       247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~---  320 (968)
T KOG1060|consen  247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QV---  320 (968)
T ss_pred             hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HH---
Confidence            11   00000000                      00   1233344556666 7888888888877776532  21   


Q ss_pred             HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       367 ~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                        ..++..|+++|.+ +..+|.-.+..+..++..
T Consensus       321 --~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~  351 (968)
T KOG1060|consen  321 --TKIAKALVRLLRS-NREVQYVVLQNIATISIK  351 (968)
T ss_pred             --HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence              1345667776653 334555544444444443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.06  E-value=6e-06  Score=53.25  Aligned_cols=55  Identities=27%  Similarity=0.444  Sum_probs=47.7

Q ss_pred             hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (417)
Q Consensus       299 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (417)
                      |.+|..|+++||+++...+..... ....+++.|..+|+++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            468999999999998888877664 5557899999999988 889999999999986

...

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.04  E-value=0.0014  Score=60.19  Aligned_cols=235  Identities=16%  Similarity=0.066  Sum_probs=159.8

Q ss_pred             hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChh
Q 014864          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFD  239 (417)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~  239 (417)
                      .+.+..++-+++.+++..+..++..+..+... -..+.+.+.--.++..+..+ .+..-+..|+..+..+...+. ....
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence            33344344445599999999999999888764 45566666655566666443 355567789998888887642 2223


Q ss_pred             hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       240 ~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~  319 (417)
                      .-.+++..++.+..+.++..+..++.+|+.++-.+++   .+...|++..|+..+.++..++....+.++-.+...+. .
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence            3477888999999999999999999999999987765   56788999999999988766677777888877775443 3


Q ss_pred             HHHHHHcCChHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHH-H-CCCHHHHHHHhccCCHHHHHH
Q 014864          320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQAVI-E-ANIIGPLVALLENAEFDIKKE  389 (417)
Q Consensus       320 ~~~~~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~-~-~~~i~~L~~~l~~~~~~v~~~  389 (417)
                      ++++...--++.++.-+.+.      .+.  +--..+..++..+...=+. .-.+. + ...+..|++.|..+.+++|+.
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            34343333344444444332      022  2334455566665542111 11112 2 257889999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 014864          390 AAWAISNATSGGT  402 (417)
Q Consensus       390 a~~~L~nl~~~~~  402 (417)
                      ....+..+..-..
T Consensus       260 Ildll~dllrik~  272 (371)
T PF14664_consen  260 ILDLLFDLLRIKP  272 (371)
T ss_pred             HHHHHHHHHCCCC
Confidence            9999998877653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0017  Score=56.58  Aligned_cols=302  Identities=12%  Similarity=0.141  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch----hHHHHHhCCChhHH
Q 014864           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE----HTKVVIDHGAVPIF  164 (417)
Q Consensus        89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~i~~~g~i~~L  164 (417)
                      ....++.+|.+++... .+ .  -+..+..|.|..-|..++ ..++..++..++.+..+.+.    ....+++.++.+.+
T Consensus        59 kttlcVscLERLfkak-eg-a--hlapnlmpdLQrGLiadd-asVKiLackqigcilEdcDtnaVseillvvNaeilkli  133 (524)
T KOG4413|consen   59 KTTLCVSCLERLFKAK-EG-A--HLAPNLMPDLQRGLIADD-ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI  133 (524)
T ss_pred             hhhhHHHHHHHHHhhc-cc-h--hhchhhhHHHHhcccCCc-chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence            3344677777776543 11 1  112334666666667777 79999999999999886552    34456688999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHH--HHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh-hhh
Q 014864          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL--LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQV  241 (417)
Q Consensus       165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~  241 (417)
                      +.++...+.++...|+..+..++.... .-..+.++.....+  .++. -..+.-.+......+..+..-+|.... ...
T Consensus       134 ldcIggeddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnla-akcndiaRvRVleLIieifSiSpesaneckk  211 (524)
T KOG4413|consen  134 LDCIGGEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLA-AKCNDIARVRVLELIIEIFSISPESANECKK  211 (524)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHH-hhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence            999999999999999999999987655 34555565555433  2232 222333455556666666655443322 233


Q ss_pred             hchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChH
Q 014864          242 SPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM  318 (417)
Q Consensus       242 ~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~  318 (417)
                      .|.+..|..-+.. .|.-|+..++.....|+..... .+.+-+.|+++.+..++.-.  +|--.-.++...+.+.....-
T Consensus       212 SGLldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeai  290 (524)
T KOG4413|consen  212 SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAI  290 (524)
T ss_pred             hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHH
Confidence            5666666655544 6777888888888888754332 35667788999988888643  444444466665555533210


Q ss_pred             H---HHHHHHc--CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC--HHHHHH-HhccCCHHHHHHH
Q 014864          319 Q---TQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI--IGPLVA-LLENAEFDIKKEA  390 (417)
Q Consensus       319 ~---~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~--i~~L~~-~l~~~~~~v~~~a  390 (417)
                      .   -+...+.  -.++..++++... ++.....|..+++.+-+.. +..+.+...|-  ...++. ..+..-..-+..+
T Consensus       291 mdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaa  368 (524)
T KOG4413|consen  291 MDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAA  368 (524)
T ss_pred             hhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHH
Confidence            0   0001110  2244456666777 8999999999999997643 33444444332  333333 2332222335566


Q ss_pred             HHHHHHhhCC
Q 014864          391 AWAISNATSG  400 (417)
Q Consensus       391 ~~~L~nl~~~  400 (417)
                      +.+|.+++..
T Consensus       369 ihaLaaIage  378 (524)
T KOG4413|consen  369 IHALAAIAGE  378 (524)
T ss_pred             HHHHHHhhcc
Confidence            6677766553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=6e-05  Score=71.00  Aligned_cols=290  Identities=17%  Similarity=0.106  Sum_probs=177.5

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHH---HHHHHHhCC--Cch
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAA---WALTNIASG--TSE  150 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~---~~L~~l~~~--~~~  150 (417)
                      ..+....++.|+.++..|+..+..+-.+.  ..-     .-.....++.+++++ .+++..|+   |.++|..-.  ..+
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~-----~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLS-----KACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhcccc--ccc-----HHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccch
Confidence            33666677788888888888877663321  111     123677888999888 89998885   455555521  111


Q ss_pred             h-HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc----CCCchhHHHHHHHH
Q 014864          151 H-TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWT  225 (417)
Q Consensus       151 ~-~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~a~~~  225 (417)
                      . ...+.+ .++..++..+.+-+..++-.|+.+||.+-.-+.++-..-++    ..++.-+.    .+..+..+..    
T Consensus       273 ~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrpk~l~s----  343 (823)
T KOG2259|consen  273 SEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRPKALYS----  343 (823)
T ss_pred             hhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccchHHHHh----
Confidence            1 222222 57888999999888899999999999886544433222222    22222110    0111111100    


Q ss_pred             HhhhhcCC------CC------CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864          226 LSNFCRGK------PQ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (417)
Q Consensus       226 l~~l~~~~------~~------~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~  293 (417)
                      =...++++      |.      .......|+.-.++.-|.++--+|+..|...++.|+...+....     ..+..|+++
T Consensus       344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDM  418 (823)
T KOG2259|consen  344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDM  418 (823)
T ss_pred             cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHH
Confidence            00111111      11      01112256666777777777789999999999999987765433     257889999


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Q 014864          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (417)
Q Consensus       294 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (417)
                      +.+....+|..|+.+|..|+..-      .+++.-++.+...|.+. ++++|.+.--.|++.-..+.+.+...+.     
T Consensus       419 fNDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v~-----  486 (823)
T KOG2259|consen  419 FNDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCVA-----  486 (823)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHHH-----
Confidence            99999999999999999888542      34445678888899888 8999988888888775555555544332     


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          374 PLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       374 ~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .|+..|.. -|+=+-+...++..+...
T Consensus       487 ~lL~~L~k-yPqDrd~i~~cm~~iGqn  512 (823)
T KOG2259|consen  487 HLLKNLGK-YPQDRDEILRCMGRIGQN  512 (823)
T ss_pred             HHHHHhhh-CCCCcHHHHHHHHHHhcc
Confidence            33333331 122244455555555443

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0069  Score=54.94  Aligned_cols=240  Identities=13%  Similarity=0.154  Sum_probs=166.1

Q ss_pred             HHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-----c----hhHHHHHhCCChhH
Q 014864           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S----EHTKVVIDHGAVPI  163 (417)
Q Consensus        93 a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~i~~~g~i~~  163 (417)
                      .++.+.-++..  +.....+++.++++.|+++|.+.+ .++-...+..|..++..+     .    .-...+++.++++.
T Consensus       104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            34444444332  455667889999999999999999 899999999999988743     1    23566788899999


Q ss_pred             HHHhhCCCCHH------HHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCC-
Q 014864          164 FVKLLYSPSDD------VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQ-  235 (417)
Q Consensus       164 L~~ll~~~~~~------i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~-  235 (417)
                      |++-+..-+..      -.+.++..+-|+..-.+.+...+.+.|.+..|+..+... .-.....++..+++-+...... 
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            99988653333      345677888899988888888999999999988855333 4455667788888877776532 


Q ss_pred             CChhhhhchHHHHHHhh----cCC-----ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHH
Q 014864          236 PPFDQVSPALPALAHLI----HSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (417)
Q Consensus       236 ~~~~~~~~~l~~L~~ll----~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~  306 (417)
                      .....--.++..+++-+    .++     ..+..++...+||.+....... ..+++..+++...-+++. ....+-.++
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal  338 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSAL  338 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence            22222234455544443    222     2456777888888877666544 456666666655555555 455678899


Q ss_pred             HHHHHhhcCCh--HHHHHHHHcCChHHHHHhhc
Q 014864          307 RTVGNIVTGDD--MQTQCVIEYQALPCLLNLLS  337 (417)
Q Consensus       307 ~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~  337 (417)
                      ++|-....+.+  .....+.+..++..++.+.-
T Consensus       339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            99999998887  66666777777777776654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.0049  Score=59.08  Aligned_cols=308  Identities=18%  Similarity=0.156  Sum_probs=188.3

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      +.-+.+++|.++-...+..+--.+.-++... .+..+.+     +..+..=|.+.+ +.....|+.+++|+.+  .+...
T Consensus        75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~klv-----in~iknDL~srn-~~fv~LAL~~I~niG~--re~~e  145 (938)
T KOG1077|consen   75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKLV-----INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE  145 (938)
T ss_pred             chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHHH-----HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence            4455666777665555555544444444221 2222222     444555555666 7888899999999876  45554


Q ss_pred             HHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      .+..  -|+   ++|-+  ..+-++..++-+|..|-..+|.   .+-..+....++.+| ++.+-.+...+...+..|+.
T Consensus       146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence            4442  234   55554  3456788888889888877664   333345678899999 67777778888888888887


Q ss_pred             CCCCCChhhhhchHHHHHHhhc-------------CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-
Q 014864          232 GKPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-  297 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~-------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-  297 (417)
                      ..|.........++..|.....             -+.|.++...+++|.++-.-.+.... ..-..+++.++...+.. 
T Consensus       217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~  295 (938)
T KOG1077|consen  217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPP  295 (938)
T ss_pred             cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCc
Confidence            7654443333333333333321             13577888899999888433322111 11112455555555422 


Q ss_pred             ---C---hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 014864          298 ---S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI  371 (417)
Q Consensus       298 ---~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  371 (417)
                         +   ...+...+.-.-+++..-+..-..+.  ..+..|-.++.+. ...+|.-|.-.++.++...+ .++.+-.+  
T Consensus       296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h--  369 (938)
T KOG1077|consen  296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH--  369 (938)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--
Confidence               1   12233344444455544443333222  4577889999988 89999999999999987522 23333332  


Q ss_pred             HHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          372 IGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       372 i~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      .+.++..|+ ..|..+|+.|+..|.-++...+..++
T Consensus       370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I  405 (938)
T KOG1077|consen  370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI  405 (938)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH
Confidence            677788888 77999999999999999887665444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00078  Score=69.60  Aligned_cols=288  Identities=16%  Similarity=0.169  Sum_probs=178.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--HH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR  194 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~  194 (417)
                      +||.|..+=-+++ +.+|.....+..-+..++....+.... .++.-|+.-|.+....+|+.++.+|..|..+.+.  ..
T Consensus       999 LIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred             hhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence            4788888766777 889988888888888775555555554 6777788888888899999999999999977653  22


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHH---HHHHHhhhhcCC-----CCCChhhhhchHHHHHH-hhcCCChHHHHHHHH
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAH-LIHSNDDEVLTDACW  265 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~---a~~~l~~l~~~~-----~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~  265 (417)
                      +.+.  .....+.+.+ ++-.+.++..   ++.+++.+|-..     +..-......++|.|.. -+-+.-++++.-++.
T Consensus      1077 e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred             HHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence            2222  1233444555 4445556554   455566655432     22223444566666553 222566899999999


Q ss_pred             HHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhH-----------HHHHHHH-HHhhcCChH--HHHHH-------H
Q 014864          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL-----------IPALRTV-GNIVTGDDM--QTQCV-------I  324 (417)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~-----------~~a~~~L-~~l~~~~~~--~~~~~-------~  324 (417)
                      ++..|+........... ...+|.|+...+.-++.+.           .+|+..+ .+.+.+++-  .+...       +
T Consensus      1154 tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred             HHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence            99999987765433222 2355666666555444332           2222222 112222220  01111       1


Q ss_pred             HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHH
Q 014864          325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE  404 (417)
Q Consensus       325 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~  404 (417)
                      -...+|.+.++++.+-.-..|..++.+++-++...+..+... .-..+..++..+++.++.+++.-..|.+.++...+++
T Consensus      1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred             HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence            235677788888766445666677777777764211111111 1235667777778889999999999999999999888


Q ss_pred             HHHHHHh
Q 014864          405 QIKYEHT  411 (417)
Q Consensus       405 ~~~~l~~  411 (417)
                      +...+++
T Consensus      1312 q~qKLie 1318 (1702)
T KOG0915|consen 1312 QMQKLIE 1318 (1702)
T ss_pred             HHHHHHH
Confidence            8777764

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.98  E-value=0.0076  Score=56.95  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=83.0

Q ss_pred             ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH--------HHHHHHc----CChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ--------TQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                      ++..|+.++.+  +.+...+.+.++-+....+..        .+.+.+.    .++|.+++..+.. +...|.....+|+
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs  348 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHH
Confidence            45677777777  557788888888888763321        2222222    4567777777776 6668888899999


Q ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ++..+-|..+-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            999876754422222468999999999999999999999999999875

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.91  E-value=0.00056  Score=67.73  Aligned_cols=308  Identities=13%  Similarity=0.089  Sum_probs=190.7

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      .+.....++....+.+...+....++....+.+....+..+.++|.+..+..+.+ ..++...+.....+.--.+  +..
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~  433 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KER  433 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCc
Confidence            3444445555555555555554444433322233334455566777777777776 6777776666665544322  111


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      -+ ....|.++..+++..+.++.+..+.+..+-...+...-.......++.+..+. ......++..+.+.+..++....
T Consensus       434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~  511 (759)
T KOG0211|consen  434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG  511 (759)
T ss_pred             Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence            11 13567777788888999999999888766544333223334444566666665 44478888889998888887643


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                        ........-+.+...+.+....++..+...+..++.....  +... ...++.++....+++...|...+.++..++.
T Consensus       512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~  586 (759)
T KOG0211|consen  512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAE  586 (759)
T ss_pred             --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence              1111122333344444444567888888777777643321  1111 1356777777777777788888888776653


Q ss_pred             CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (417)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L  394 (417)
                      -..   +.+....++|.+..+..+. .+.||..++..|-.+...-.   ....+..+.|.+..+.++.+.++|..|..++
T Consensus       587 v~g---~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~---~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  587 VLG---QEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLD---ESVRDEEVLPLLETLSSDQELDVRYRAILAF  659 (759)
T ss_pred             Hhc---cHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcc---hHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            211   2244556899999999998 99999999999998876311   1334455677777777788888888887777


Q ss_pred             HHhhC
Q 014864          395 SNATS  399 (417)
Q Consensus       395 ~nl~~  399 (417)
                      +.+..
T Consensus       660 ~~i~l  664 (759)
T KOG0211|consen  660 GSIEL  664 (759)
T ss_pred             HHHHH
Confidence            66544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0023  Score=63.56  Aligned_cols=281  Identities=17%  Similarity=0.156  Sum_probs=167.8

Q ss_pred             CCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHhCC--CchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHh
Q 014864          116 GVVPRFVEFLL------RE-DYPQLQFEAAWALTNIASG--TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI  186 (417)
Q Consensus       116 g~i~~Lv~lL~------~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl  186 (417)
                      |+++.+++.+.      .+ +++.-+..|+.+++++++-  .+.--+...+.-.++.+...++++.--++..|+|+++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            45677777776      22 1356677788888888751  122222334445567777788888899999999999999


Q ss_pred             hCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCC---hhhhhchHHHHHHhhcCCChHHHHHH
Q 014864          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQVSPALPALAHLIHSNDDEVLTDA  263 (417)
Q Consensus       187 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~l~~L~~ll~~~~~~v~~~a  263 (417)
                      +...-  ++...-..++....+.+..+.+-.++..|+.+|..+....+...   ...+.+.+..|+++.+.-+.+....+
T Consensus       490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            84332  22222233567777888668888999999999999988754332   23335556666666666555555555


Q ss_pred             HHHH-HHhccCChHHHHHHHHcCChHHHHhhcCC---CC---hhhHHHHHHHHHHhhc------CChHHHHHHHHcCChH
Q 014864          264 CWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PS---PSVLIPALRTVGNIVT------GDDMQTQCVIEYQALP  330 (417)
Q Consensus       264 ~~~l-~~l~~~~~~~~~~~~~~~~~~~L~~~l~~---~~---~~v~~~a~~~L~~l~~------~~~~~~~~~~~~~~l~  330 (417)
                      +..+ +..+..-......+.+ .+.....+++..   .+   ..-...|..+|..+.+      ..+...+ -++..++|
T Consensus       568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~  645 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP  645 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence            4433 3332211111111111 244555666653   12   2223344444433321      2222222 33456778


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864          331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       331 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      .+-.+|++. -.++-++++-.+.+++...++--..++  ++++.+.+++.+...+.-....-+|.|++..|.+
T Consensus       646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence            888888887 778888999888888765433222233  3566777777766677777777777777776643

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.006  Score=55.31  Aligned_cols=243  Identities=13%  Similarity=0.117  Sum_probs=171.8

Q ss_pred             ccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCC----CCC----cHHHHHHhCCHHHHHHhhcCCC-----CHHHHHHHH
Q 014864           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEAA  138 (417)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~i~~Lv~lL~~~~-----~~~~~~~a~  138 (417)
                      +.+++.++++|..++.++-...+..+..+...+    ..+    .++.+++.++++.|++-+..=+     ...-...++
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            467888999999999888888888888775432    112    3667889999999999887543     122345567


Q ss_pred             HHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc----C
Q 014864          139 WALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----G  212 (417)
Q Consensus       139 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~  212 (417)
                      .++-|+....+.....+++.|.+.-|+.-+..  +-..-...|..++.-+..++.+.+...-..+++..+++-+.    +
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            78889999889999999999888877774432  45566778999999888888878888888889999888773    1


Q ss_pred             C----CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh--HHHHHHHHcCC
Q 014864          213 Q----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGV  286 (417)
Q Consensus       213 ~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~  286 (417)
                      +    ...++.++...+|+.+.....+........++....-+++. ....+..++..|-+...+++  .....+++..+
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG  362 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG  362 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence            1    13567778888888777776565666666677666655554 44556778888888887776  55666777767


Q ss_pred             hHHHHhhcC-CCC---------hhhHHHHHHHHHHhhcC
Q 014864          287 FPRLAEFLM-HPS---------PSVLIPALRTVGNIVTG  315 (417)
Q Consensus       287 ~~~L~~~l~-~~~---------~~v~~~a~~~L~~l~~~  315 (417)
                      +..+....- .+.         ...-...+..|+.+...
T Consensus       363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            766666543 221         23445566666666543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.87  E-value=0.0083  Score=59.22  Aligned_cols=318  Identities=11%  Similarity=0.055  Sum_probs=186.2

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhH
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  163 (417)
                      ++.|.+...+...+.++.+..  .....+. .-++...+..+.-+..+.++..|+.+++..+.  ++-..... .+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~-p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQ-PMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccc-hHHHHH
Confidence            456777777888888775542  1111111 11245555555555547888899988888774  22222222 267788


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCCCCChhhhh
Q 014864          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (417)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  242 (417)
                      |.++....+.++....+.+|+..+..+|++... .+..+.|..+.++. .+.|+.+...+-.++-.++... ........
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            888888888999999999999999888876443 34445666665553 4567877777777777777632 22233446


Q ss_pred             chHHHHHHhhcCCC----hHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCC
Q 014864          243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       243 ~~l~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~  316 (417)
                      ..+|.+++.+..++    .....-++..|.-+.++.+ ...+.++.. ++|.+.++.- +++..+...+-.||..+...+
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            78999999998765    4444555555554544432 223334444 6777777754 456778888999998888877


Q ss_pred             hHHHHHHHHcCChH--HHHHhhcCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHCCCHHHHH-HHhccCCHHHHHH
Q 014864          317 DMQTQCVIEYQALP--CLLNLLSGNYKKSIKKEACWTVSNIT----AGNREQIQAVIEANIIGPLV-ALLENAEFDIKKE  389 (417)
Q Consensus       317 ~~~~~~~~~~~~l~--~L~~ll~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L~-~~l~~~~~~v~~~  389 (417)
                      .++...--..++..  .++..+..=-+++.-..++..+|.+.    ..-+..+...++ .++..++ ++-......+-..
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae~lsviQs  770 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAETLSVIQS  770 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhhhHHHHHH
Confidence            76655444443333  33332211003333344444444443    222222221111 1222222 2333456788888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHh
Q 014864          390 AAWAISNATSGGTHEQIKYEHT  411 (417)
Q Consensus       390 a~~~L~nl~~~~~~~~~~~l~~  411 (417)
                      .+.+++.++.......+..|..
T Consensus       771 Li~VfahL~~t~~~~~l~FL~S  792 (1005)
T KOG2274|consen  771 LIMVFAHLVHTDLDQLLNFLSS  792 (1005)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHh
Confidence            8888888887644334444443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0086  Score=59.13  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=123.7

Q ss_pred             hcCCChHHHHHHHHHHH-HhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCC
Q 014864           82 VWSNDSGVQYECTTQFR-KLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (417)
Q Consensus        82 l~s~~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~  160 (417)
                      +.+.+...+..|++.+. .+..++ +  ...     ..|-+++.+.+.+ .+++.-.-.-|.+.+...|+..  +.   +
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~-d--mss-----Lf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~--lL---a   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGE-D--MSS-----LFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELA--LL---A   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCC-C--hHH-----HHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHH--HH---H
Confidence            56666777788876554 444443 2  222     3777788888666 8999999989999998766332  22   4


Q ss_pred             hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (417)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (417)
                      ++.+.+=++++|+.+|..|+++++.+=  .    ..+. ..+++++.+++ .++++.+++.|+.++..+-+-++.  ...
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~--~----~el~-~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~  163 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLR--V----KELL-GNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYH  163 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcC--h----HHHH-HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhh
Confidence            778888899999999999999999872  1    1222 22678888888 889999999999999999976432  222


Q ss_pred             hhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      ..|.+..+..++.+.||.+..+|+.++..+..
T Consensus       164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         164 ELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            24567778888889999999999999988753

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.82  E-value=0.012  Score=58.18  Aligned_cols=237  Identities=15%  Similarity=0.134  Sum_probs=162.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHH
Q 014864          169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL  248 (417)
Q Consensus       169 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L  248 (417)
                      .+..+.+.-.+.|+++..+...+.....+  .-++...+..+..+..+.++..|+.+++..|.  +........+++..|
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence            34667777789999997775433222221  11455666777667778888899999888883  333344446777788


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864          249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (417)
Q Consensus       249 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  326 (417)
                      .++......++....+.+|+..+..+++.. ...++.+.|.++.++.  +++|.+...+-.++-.++....  ...-+..
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~--~~g~m~e  612 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA--NYGPMQE  612 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH--hhcchHH
Confidence            888877888999999999999998877654 3455668888777754  4567666666666666554211  1112345


Q ss_pred             CChHHHHHhhcCCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCC
Q 014864          327 QALPCLLNLLSGNYK----KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-ENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       327 ~~l~~L~~ll~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ..+|.++..++.+ .    .....-|.-.|.-+.++.|.-....+-.-++|.+.++. +++|..+-..+..||..+... 
T Consensus       613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~-  690 (1005)
T KOG2274|consen  613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV-  690 (1005)
T ss_pred             HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc-
Confidence            6799999999887 4    56677788888878875444444444446788888874 667889999999999999887 


Q ss_pred             CHHHHHHHHhcCc
Q 014864          402 THEQIKYEHTFCT  414 (417)
Q Consensus       402 ~~~~~~~l~~~g~  414 (417)
                      +.+|+-.--..+|
T Consensus       691 ~~eq~~t~~~e~g  703 (1005)
T KOG2274|consen  691 TLEQLLTWHDEPG  703 (1005)
T ss_pred             CHHHHHhhccCCC
Confidence            4565554444443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.78  E-value=8.3e-05  Score=44.43  Aligned_cols=38  Identities=47%  Similarity=0.667  Sum_probs=35.0

Q ss_pred             HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       361 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                      +....+++.|+++.|+.++.++++++++.|+|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46677889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.006  Score=61.94  Aligned_cols=242  Identities=13%  Similarity=0.106  Sum_probs=152.1

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC--CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hHHHHHH
Q 014864          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVL  198 (417)
Q Consensus       122 v~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~  198 (417)
                      .....+.+...+|..+..+|..++.. +.......+.  .+...|..-+++.....+...+.+|..|....+ +..+.+.
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            33334443389999999999999986 2222111110  233455555555666777778888888775544 3333322


Q ss_pred             hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh--cC---C-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC--RG---K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~--~~---~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      .  .|+.++=.+ ++.+...++++..+|..++  ..   . ..+....+...++.+...+-.+...+....+-++..+..
T Consensus       738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence            2  233333334 6678888898888888888  21   1 222345556666666665544433333332445554443


Q ss_pred             CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      ...+......-.++++.+..+|.+.+++++..|+..+..++...++..-......+++.++.++++. ...+|..+-..|
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL  893 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence            2221111111224667777788999999999999999999998887655555556899999999888 889999999999


Q ss_pred             HHHhc-CCHHHHHHHHH
Q 014864          353 SNITA-GNREQIQAVIE  368 (417)
Q Consensus       353 ~nl~~-~~~~~~~~l~~  368 (417)
                      -.++. ...+.++.+..
T Consensus       894 ekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  894 EKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHhCHHHHHhhCH
Confidence            88886 34555555554

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.75  E-value=0.00021  Score=51.68  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (417)
Q Consensus       133 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~  199 (417)
                      ++...+.+++|++..++.....+.+.|++|.++....  ..+|-+++.|++++.|++.++++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            3567889999999999999999999999999998664  478999999999999999999998887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.75  E-value=9e-05  Score=44.29  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=35.8

Q ss_pred             chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh
Q 014864          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (417)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~  187 (417)
                      ++.+..+++.|+++.|+.++.+++++++..++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            447788889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.0017  Score=63.85  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC
Q 014864          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (417)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~  297 (417)
                      -....=.+++.+..+++      ....+|.+++.+.+.|.+++.-.-.-+-..+...++..-  +   .+..+.+=++++
T Consensus        36 kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--L---avNti~kDl~d~  104 (757)
T COG5096          36 KIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--L---AVNTIQKDLQDP  104 (757)
T ss_pred             HHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--H---HHHHHHhhccCC
Confidence            33444456677777644      456677888888888999988777777777777764322  2   467788888999


Q ss_pred             ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Q 014864          298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA  377 (417)
Q Consensus       298 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  377 (417)
                      ++.+|..|+++++.+-.  ++     +-..+++++.+++.++ ++.||+.|+.++.++-.-+++   .+.+.|.+..+..
T Consensus       105 N~~iR~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~  173 (757)
T COG5096         105 NEEIRGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKE  173 (757)
T ss_pred             CHHHHHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHH
Confidence            99999999999988742  21     2225688999999999 999999999999999875554   3346678889999


Q ss_pred             HhccCCHHHHHHHHHHHHHhhCC
Q 014864          378 LLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       378 ~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ++.+.+|.|..+|+.+|..+-..
T Consensus       174 l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         174 LVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HhhCCCchHHHHHHHHHHHhchh
Confidence            99999999999999999888553

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.72  E-value=0.0049  Score=61.31  Aligned_cols=149  Identities=14%  Similarity=0.087  Sum_probs=89.0

Q ss_pred             CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      +++.+-.+. .+.+..++...+..+..+.--.|  ....+....|.+...+++.++.|+.+..+.+..+-...+..-...
T Consensus       399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~  475 (759)
T KOG0211|consen  399 ILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST  475 (759)
T ss_pred             hhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence            344444444 55566666666665555544322  333446778888888888899999999987766543333222223


Q ss_pred             HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      +....++.+..+-....+.++...+..+-.++....   ..+++...-+.+..++.+. ...+++.|+..+..++.
T Consensus       476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~  547 (759)
T KOG0211|consen  476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE  547 (759)
T ss_pred             hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence            334466777777666677788777777766664332   1233333445555555555 55666666666666654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.70  E-value=0.00051  Score=67.47  Aligned_cols=189  Identities=17%  Similarity=0.137  Sum_probs=131.0

Q ss_pred             hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH-------------HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (417)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~  227 (417)
                      ...|+.+|++  +++-..+..++.-+..|++.+             |+.+. ..++|.+++.+ ...+...+.....+|+
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHH
Confidence            3455666654  445556666666666665433             22222 23677888888 4556667778888888


Q ss_pred             hhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC---hhhHH
Q 014864          228 NFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLI  303 (417)
Q Consensus       228 ~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~---~~v~~  303 (417)
                      +....-|... .......+|.|++.|.-+|..++..++.++.-+....+.....-++. ++|.++.+=.+++   ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHH
Confidence            8877654422 23346778889999999999999999999988776554433333333 6777777766655   57899


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (417)
                      .|+.+|+.+...-+...-......++..|.+.|.++ ..-||++|..+=.+-
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            999999999986554444455567888999999998 899999998764443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.69  E-value=0.0004  Score=50.27  Aligned_cols=92  Identities=15%  Similarity=0.199  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (417)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~  381 (417)
                      |..++.+|+.++.+-.......+ ..++++++..+.++ +++||..||.+|.|++....+.+-..+ ..+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            45677777777766655544333 36889999999999 999999999999999874333332222 3589999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 014864          382 AEFDIKKEAAWAISNA  397 (417)
Q Consensus       382 ~~~~v~~~a~~~L~nl  397 (417)
                      .++.||..| +.|-++
T Consensus        80 ~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRL   94 (97)
T ss_pred             CchhHHHHH-HHHHHH
Confidence            999988777 555444

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.65  E-value=0.012  Score=55.88  Aligned_cols=232  Identities=16%  Similarity=0.124  Sum_probs=151.8

Q ss_pred             cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIASGTSEHTKVVID  157 (417)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  157 (417)
                      .+.++.+...|+++|+|++-.. ....+.+.+.|..+.+++.|+..     + .++.+...++|.-++...+..+..+++
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            3467899999999999998764 44556688999999999999986     4 789999999999999877777766665


Q ss_pred             C-CChhHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC-------
Q 014864          158 H-GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------  212 (417)
Q Consensus       158 ~-g~i~~L~~ll~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-------  212 (417)
                      . +++..+...|..                 .+......++.++-|+..+.+.... -...+.++.++.++..       
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence            4 677777665521                 1345567788889999865543222 0122334444444321       


Q ss_pred             -CCchhHHHHHHHHHhhhhcCCCC------------CChhhhhchHHHHHHhhc----CC----ChHHHHHHHHHHHHhc
Q 014864          213 -QPKLSMLRNATWTLSNFCRGKPQ------------PPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLS  271 (417)
Q Consensus       213 -~~~~~~~~~a~~~l~~l~~~~~~------------~~~~~~~~~l~~L~~ll~----~~----~~~v~~~a~~~l~~l~  271 (417)
                       .+.......++.+|.|+-.....            .........+..|+.+|.    ..    -.+.....+.+|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence             12345677788888877321100            001111234445555543    11    1356778888888888


Q ss_pred             cCChHHHHHHHHc----------------CChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          272 DGTNDKIQAVIEA----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       272 ~~~~~~~~~~~~~----------------~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      ..+....+.+...                .+-..|+.++.+..+.++..+...+-.+|..+.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            8765544433332                345678888888888888888888888875544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.011  Score=60.16  Aligned_cols=237  Identities=13%  Similarity=0.121  Sum_probs=152.0

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCchHHHHHHh--cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 014864          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (417)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  247 (417)
                      +.+..+|..+..+|..++...+ +.....+  ..+.+.|.+-+ ++.....+...+.+|..|....+......+...+|-
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPS-GEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3578899999999999987622 2221111  01223344444 556677888888898888887663333444455554


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhcc--C----ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          248 LAHLIHSNDDEVLTDACWALSYLSD--G----TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       248 L~~ll~~~~~~v~~~a~~~l~~l~~--~----~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      ++-.+...|...+..+..+|..++.  .    .++.....++. +++.+...+-.+...+....+-+++.+.........
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld  821 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD  821 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4444466688888888888888872  1    00111112221 333333333333444444445666666654433333


Q ss_pred             HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ...-.+++..+..+|.++ ++++++.|...+.-++...|+.+-.-....++|.++.+.++....++..+-..|-.++...
T Consensus       822 ~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf  900 (1176)
T KOG1248|consen  822 DETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            333346677788888888 9999999999999999876664433334468999999888888999999999999998887


Q ss_pred             CHHHHHHHH
Q 014864          402 THEQIKYEH  410 (417)
Q Consensus       402 ~~~~~~~l~  410 (417)
                      ..+.++.+.
T Consensus       901 g~~eLe~~~  909 (1176)
T KOG1248|consen  901 GAEELESFL  909 (1176)
T ss_pred             CHHHHHhhC
Confidence            766665554

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.0086  Score=50.73  Aligned_cols=227  Identities=19%  Similarity=0.254  Sum_probs=144.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      +..+.+...++........+.++.++            -....+|.|+..|...+ .|.+|.+|+.+|+++..  +    
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~------------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~----   99 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQM------------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P----   99 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhh------------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence            44445444444444455555555544            23446899998887544 47899999999999873  2    


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH--------H----HHHhcCCHHHHHHHhcCCCchhH-HH
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--------D----LVLSQGGLVPLLAQLNGQPKLSM-LR  220 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--------~----~~~~~g~i~~L~~ll~~~~~~~~-~~  220 (417)
                           ..++.+-++.+++-..+++.|..++..+--.+....        .    .-...+-+..+-..+.+.+.+.+ +.
T Consensus       100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry  174 (289)
T KOG0567|consen  100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY  174 (289)
T ss_pred             -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence                 456777778877888888888777776631110000        0    00111224444444434333333 33


Q ss_pred             HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--C
Q 014864          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--S  298 (417)
Q Consensus       221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~  298 (417)
                      .+.+.|.|+-.          ...+..|..-+..+..-++..++.+++.|-.  +         -.++.|.+.|.+.  +
T Consensus       175 ~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~  233 (289)
T KOG0567|consen  175 RAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEH  233 (289)
T ss_pred             hhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcc
Confidence            45555555543          2456677777777778889999999988742  1         1467777777643  5


Q ss_pred             hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       299 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      +-+|..|+.+||.++..           ..++.|.+.+.+. .+-|++.+..+|.-+-.
T Consensus       234 pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~-~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  234 PMVRHEAAEALGAIADE-----------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY  280 (289)
T ss_pred             hHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence            78999999999999732           2356788888888 88888888888876654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.61  E-value=0.00063  Score=49.21  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIE  368 (417)
Q Consensus       301 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (417)
                      .+...++.|+|++..++.....+.+.|++|.++....-. .+|.+|+.|.|++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            466789999999999999999899999999999886432 38999999999999999999987766553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.59  E-value=0.0036  Score=49.23  Aligned_cols=132  Identities=13%  Similarity=0.081  Sum_probs=102.6

Q ss_pred             HHHHHcCChHHHHhhcCCCC------hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHH
Q 014864          279 QAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT  351 (417)
Q Consensus       279 ~~~~~~~~~~~L~~~l~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~  351 (417)
                      ..+++.+++..|+.++.++.      ..+...++.++..+........ ..+...++..+..+..... +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            46788889999999998765      3566667777777765543222 2455566777888887653 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHT  411 (417)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~  411 (417)
                      |-+++..++...+.+-+.=-++.|+..|...+++++.+|...+.-+...++....+.+.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            999999878766666665669999999999999999999999999999988777666553

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.57  E-value=0.0023  Score=57.66  Aligned_cols=203  Identities=13%  Similarity=0.121  Sum_probs=141.9

Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH-----HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......     .+.+... .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            3445588899999999888999999999999998654333     2333322 133333344344567777777777777


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcCCCChhhHHHH
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA  305 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a  305 (417)
                      .++...-.......+.+-.+...+..++-++..+|..++..+...+.......+..   .++.....+|.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77764323333335566667788888899999999999999776666655555554   356778888999999999999


Q ss_pred             HHHHHHhhcCChHH---HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       306 ~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      +..||.+.......   ..++-+..-+..++.+|++. +..++.+|..++--++++
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhC
Confidence            99999998665532   23334557788899999998 999999999999988873

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.0068  Score=58.87  Aligned_cols=69  Identities=26%  Similarity=0.339  Sum_probs=53.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      .+.+-.++.+.. ..+..+|+.++.++...++....     .++..|-.++.++...+|-.|..+|..+|.-.|.
T Consensus       247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~  315 (865)
T KOG1078|consen  247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ  315 (865)
T ss_pred             HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence            455556666667 78999999999998775444332     2777888888999999999999999999976653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0054  Score=59.25  Aligned_cols=247  Identities=17%  Similarity=0.101  Sum_probs=150.4

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHH
Q 014864          125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV  204 (417)
Q Consensus       125 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~  204 (417)
                      |++++ +-+|-.+++.|+.+=.  ++.    ++ ..+|.+...|.+.+.-++.+|+.++..|-.....     +--.+-+
T Consensus       108 LQHPN-EyiRG~TLRFLckLkE--~EL----le-pl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pDape  174 (948)
T KOG1058|consen  108 LQHPN-EYIRGSTLRFLCKLKE--PEL----LE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPDAPE  174 (948)
T ss_pred             ccCch-HhhcchhhhhhhhcCc--HHH----hh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCChHH
Confidence            44555 5677777766666543  332    22 5678888899999999999999998888543211     1112333


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh---cCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      .+-..|....|+...++|.-.|...-..          .++..+...+   .+-++..+.-.+..+...+...+...   
T Consensus       175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~---  241 (948)
T KOG1058|consen  175 LIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK---  241 (948)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh---
Confidence            4445555677888888877655433221          2222232222   22345555555556665555444322   


Q ss_pred             HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (417)
Q Consensus       282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (417)
                        ...+..+..+|.+.++.++-.|..+|-.++........      ....++.++....+-.++--..--|..+.+.+..
T Consensus       242 --~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~  313 (948)
T KOG1058|consen  242 --ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK  313 (948)
T ss_pred             --hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence              23677888888888888888888888777654432221      1334555554443555665555555555543332


Q ss_pred             HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       362 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      ..     .|++-.++++|+.+|.+++..++.....++..-+.+++..+.
T Consensus       314 il-----~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~L  357 (948)
T KOG1058|consen  314 IL-----QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFL  357 (948)
T ss_pred             HH-----HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHH
Confidence            22     245666778889999999999999998888877766665444

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.54  E-value=0.0057  Score=50.28  Aligned_cols=93  Identities=25%  Similarity=0.328  Sum_probs=76.1

Q ss_pred             chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l  294 (417)
                      ++.++.+++-+++.|+...|    ..+.+.+|.+...|.++++.|+..++.+|.+|...+.-..    +..++..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence            46788999999999998754    3457789999999999999999999999999986543221    122447788889


Q ss_pred             CCCChhhHHHHHHHHHHhhcC
Q 014864          295 MHPSPSVLIPALRTVGNIVTG  315 (417)
Q Consensus       295 ~~~~~~v~~~a~~~L~~l~~~  315 (417)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999876

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.015  Score=56.33  Aligned_cols=226  Identities=15%  Similarity=0.181  Sum_probs=133.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      ...+-+.|..++ .-.-..|...++-+-.++.. .      .++.-+..+-.. .+.++.....-.+.-+.....+    
T Consensus       451 Ye~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~-~------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe----  518 (929)
T KOG2062|consen  451 YEKLKEVLYNDS-AVSGEAAGIAMGLLMLGTAN-Q------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE----  518 (929)
T ss_pred             HHHHHHHHhccc-hhhhhHHHHhhhhHhhCcCc-H------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh----
Confidence            455555666554 33334444445544444221 1      233444444443 4555655444444433332221    


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh-hcCCChHHHHHHHHHHHHhccCCh
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                           ...+++.-+..+.|+-++.....++.---.+..      ..+++..|++. +++.|.+|+..|.-+|+.++..++
T Consensus       519 -----~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp  587 (929)
T KOG2062|consen  519 -----DADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP  587 (929)
T ss_pred             -----hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence                 344555555477788888776665543222211      13455556655 456689999999999999987776


Q ss_pred             HHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (417)
                      +.         ++..+.+|.. -++.||.-+..+||-.|.++.....       +..|-.+..++ ..-||+.|+.+++-
T Consensus       588 ~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lLepl~~D~-~~fVRQgAlIa~am  650 (929)
T KOG2062|consen  588 EQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA-------INLLEPLTSDP-VDFVRQGALIALAM  650 (929)
T ss_pred             hh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH-------HHHHhhhhcCh-HHHHHHHHHHHHHH
Confidence            53         4666777764 5899999999999999988864432       44455556666 88999999999998


Q ss_pred             HhcC-CHHHHHHHHHCCCHHHHHHHhccCCHH
Q 014864          355 ITAG-NREQIQAVIEANIIGPLVALLENAEFD  385 (417)
Q Consensus       355 l~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~  385 (417)
                      |... ++..... + .++...+.+.+.+.+.+
T Consensus       651 Im~Q~t~~~~pk-v-~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  651 IMIQQTEQLCPK-V-NGFRKQLEKVINDKHED  680 (929)
T ss_pred             HHHhcccccCch-H-HHHHHHHHHHhhhhhhH
Confidence            8752 2221111 1 24566666777655433

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.51  E-value=0.0093  Score=53.56  Aligned_cols=192  Identities=20%  Similarity=0.223  Sum_probs=124.7

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC--Cc
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS  149 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~--~~  149 (417)
                      .+...+..+.......+..|+..+.+++...  ...+.+.  ...++..+...++.+. .+-+..|+.+++-++-.  ..
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            3667788888777899999999999998753  2222221  3346788888888887 56677777777666553  23


Q ss_pred             hhHHHHHhCCChhHHHHhhCCC--CHHHHHHHHHHHHHhh---CCCchHHHHHHhcCCHHHHHH--HhcC---------C
Q 014864          150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLLA--QLNG---------Q  213 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~---~~~~~~~~~~~~~g~i~~L~~--ll~~---------~  213 (417)
                      .....+.+ ...|.|...+.+.  +..++..|+.+|+-++   ...+......++  .+..+..  ....         .
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            44445554 5778888888763  4566677777777665   333222111111  2221111  1111         1


Q ss_pred             CchhHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          214 PKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      +++.+...|+.+++-|...-|.... ......+|.|..+|.++|.+|+..|-.+|+-|.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2356888888888888766543222 334778999999999999999999988887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.49  E-value=0.0076  Score=47.44  Aligned_cols=126  Identities=14%  Similarity=0.163  Sum_probs=99.6

Q ss_pred             HHHHHHhcCCHHHHHHHhcCCCc-----hhHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhcCC--ChHHHHHHH
Q 014864          193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSN--DDEVLTDAC  264 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~--~~~v~~~a~  264 (417)
                      +...++..|++..|++++.+...     .++...++.++..|.... ...+... ..++..++..+...  |..+...++
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            45677888999999999965553     578888999999988874 3334333 56677777777654  688999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~  319 (417)
                      ..|-+++.+++...+.+-+.--++.|+.+|+.+++.++..|+..+-.+..+.++.
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            9999999988887777777767999999999999999999999988887655543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.00025  Score=64.62  Aligned_cols=182  Identities=20%  Similarity=0.192  Sum_probs=110.4

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC----CCCChhhhhchHH
Q 014864          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP  246 (417)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~  246 (417)
                      .+.-++..|+.+++-+.-+..--.+......+...++..+ .+..-..+..+.|+++|++..-    |.+......-.-.
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~  481 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL  481 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence            4445667777777776655543344444444556666666 5556678899999999998642    4433222211111


Q ss_pred             HHHHhhc------CCChHHHHHHHHHHHHhccCChHHHHHHHHc-------CChHHHHhh-cCCCChhhHHHHHHHHHHh
Q 014864          247 ALAHLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-------GVFPRLAEF-LMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       247 ~L~~ll~------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-------~~~~~L~~~-l~~~~~~v~~~a~~~L~~l  312 (417)
                      .|..++.      -++..|..++..+|+++..--    +.+.+.       +-+..+... .....-+++-+||+++||+
T Consensus       482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl----q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL  557 (728)
T KOG4535|consen  482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL----QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL  557 (728)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH----HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence            1222221      235778999999999886321    111111       112222222 2234568999999999999


Q ss_pred             hcCChH-HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          313 VTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       313 ~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ..+..- ....-....+++.|..++.+..+..||..|+.+|.--..
T Consensus       558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            977653 222223445677888888777689999999999987764

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.0029  Score=57.93  Aligned_cols=263  Identities=16%  Similarity=0.104  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchHHHHHHhcCCHHH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-----GDSPRCRDLVLSQGGLVP  205 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~~  205 (417)
                      ..++.++..+|.-++.+-.-.+..++  .....+...+....+.++..+..++-.+-     .+.|+.-+.-...|.+-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            36778888888887764222222222  23344445556678889888888877664     222221111111221111


Q ss_pred             ------HHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCChhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHH
Q 014864          206 ------LLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDK  277 (417)
Q Consensus       206 ------L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~  277 (417)
                            .-....++.....+...|-+++++..... .-+.. -....+.+..-. .+.+.-++..|.+++.-+.-++.-.
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr  425 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR  425 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence                  11222244456677788888888876531 11110 011222222222 2223446677777777666665544


Q ss_pred             HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc----CCh---HHHHHHHHcCChHHHHHhh--cCCCchhHHHHH
Q 014864          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDD---MQTQCVIEYQALPCLLNLL--SGNYKKSIKKEA  348 (417)
Q Consensus       278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~----~~~---~~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a  348 (417)
                      .....-......+...+.+..-..+..+.+++|||..    +.+   .+...+.. -.+..++..-  .+..+..|+.++
T Consensus       426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~na  504 (728)
T KOG4535|consen  426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNA  504 (728)
T ss_pred             hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHH
Confidence            4443434456667777777777889999999999974    222   12222221 1122222221  122267899999


Q ss_pred             HHHHHHHhcCCHHHHHHHHH-------CCCHHHHHH-HhccCCHHHHHHHHHHHHHhhCCC
Q 014864          349 CWTVSNITAGNREQIQAVIE-------ANIIGPLVA-LLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~-------~~~i~~L~~-~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ..+|+|+..    ..+.+.+       .+-+..+.. ....+..+|+-+||++++|+..+.
T Consensus       505 vraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  505 VRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence            999999864    1222222       122222222 223457899999999999999874

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.03  Score=56.54  Aligned_cols=262  Identities=14%  Similarity=0.097  Sum_probs=156.6

Q ss_pred             hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchH
Q 014864          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRC  193 (417)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~  193 (417)
                      .+++..|.+.+++.+ ..++-.|++.++.++...|..   +.+ .+|...+.++.. .++..-..++-+|+.++..+--.
T Consensus       340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            356888888999988 799999999999999976622   222 456666665654 33555568889999998544221


Q ss_pred             HHHHHhcCCHHHHHHHhcC-------CCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHH-HHhhcCCChHHHHHHH
Q 014864          194 RDLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPAL-AHLIHSNDDEVLTDAC  264 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~~-------~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L-~~ll~~~~~~v~~~a~  264 (417)
                      -..+.  .+++.+++-+..       +....++..|+++++.+++.. |...........+.| ...+-+.+...+..|.
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            11111  145555555521       234678999999999999976 322222333343332 2334455666777777


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-hcCCCchh
Q 014864          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKS  343 (417)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~  343 (417)
                      .++........+ ..     .+++ |+.....-....+.++...+..-....+.....+++     .++.. +.+= +..
T Consensus       493 AAlqE~VGR~~n-~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~  559 (1133)
T KOG1943|consen  493 AALQENVGRQGN-FP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVK  559 (1133)
T ss_pred             HHHHHHhccCCC-CC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHH
Confidence            777665422111 00     0111 222222222344555555555555555544443332     22222 3444 889


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +|..++|+|.++....|+.    ...+.++.|++.....+...+.-+..+.+.++..
T Consensus       560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~  612 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA  612 (1133)
T ss_pred             HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence            9999999999987655542    3347788888888888888777766666666554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=0.0041  Score=60.59  Aligned_cols=213  Identities=15%  Similarity=0.110  Sum_probs=148.6

Q ss_pred             chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHH
Q 014864          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSY  269 (417)
Q Consensus       191 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~  269 (417)
                      ..-+...+..|+...|+.+. ....+........+|.  .  .-..........++.+.+.++.+. ..-...++.++.|
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altn  568 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTN  568 (748)
T ss_pred             HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence            33455677889999999998 5555566666666666  1  111122223445556665554332 2223567889999


Q ss_pred             hccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHH
Q 014864          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEA  348 (417)
Q Consensus       270 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a  348 (417)
                      |+..++...+.+++...++.+-.++...++..+..++..+.|+..++.-....+.+ ...++.....+... ......++
T Consensus       569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~  647 (748)
T KOG4151|consen  569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAG  647 (748)
T ss_pred             ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhc
Confidence            99887777777888878888888888899999999999999999988876666666 35666666666665 77888888


Q ss_pred             HHHHHHHhcCCHHHHH-HHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864          349 CWTVSNITAGNREQIQ-AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       349 ~~~L~nl~~~~~~~~~-~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      +.++..|+.....++. ..--......++.++.+.++.++.--+..+.|+ ..+..+-.+.+.
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~  709 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIF  709 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhc
Confidence            8888877765444444 222345778888999999999999999999884 444444444443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.0018  Score=65.47  Aligned_cols=164  Identities=17%  Similarity=0.155  Sum_probs=124.9

Q ss_pred             HHHHhhhhcCC-CCCChhhhhchHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-C
Q 014864          223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-H  296 (417)
Q Consensus       223 ~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~  296 (417)
                      ..++..+|... -......+..+.|.+++..+    .+||+++..|.-+|+.+..-+.+..    +. -+|.|+..|. +
T Consensus       898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----es-~l~llftimeks  972 (1251)
T KOG0414|consen  898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----ES-HLPLLFTIMEKS  972 (1251)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----HH-HHHHHHHHHhcC
Confidence            34455555443 11123444667888888884    3579999999999999886654422    22 5788999998 7


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Q 014864          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV  376 (417)
Q Consensus       297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  376 (417)
                      +++.+|.+++-++|.++...+...+     -+-+.|..-|.+. ++.||+.|..+|+++...+.-     --.|.++.+.
T Consensus       973 p~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmi-----KVKGql~eMA 1041 (1251)
T KOG0414|consen  973 PSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMI-----KVKGQLSEMA 1041 (1251)
T ss_pred             CCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhh-----HhcccHHHHH
Confidence            8899999999999999977765444     3456788889999 999999999999999875332     2359999999


Q ss_pred             HHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          377 ALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       377 ~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      .++.+++.+++.-|-..+..+...++
T Consensus      1042 ~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhhhccc
Confidence            99999999999999988887777763

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.39  E-value=0.00057  Score=49.46  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC
Q 014864          219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS  298 (417)
Q Consensus       219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~  298 (417)
                      +..++++|...+..-+.........++|.++..+.++|..|+..+|.+|.+++....+..-..+ ..+++.|..++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc
Confidence            4456677777776655555566688999999999999999999999999999876544332222 247888899999999


Q ss_pred             hhhHHHHHHHHHHh
Q 014864          299 PSVLIPALRTVGNI  312 (417)
Q Consensus       299 ~~v~~~a~~~L~~l  312 (417)
                      +.|+..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9888766 444443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0047  Score=57.79  Aligned_cols=132  Identities=17%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHH--hccCChHHHHHHHHcCChHHHHhh-cCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864          247 ALAHLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (417)
Q Consensus       247 ~L~~ll~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  323 (417)
                      .+.+++.+.|+-++...+.+++.  ...++         .|++..++.. .++.+.+++..|+-+||-+|..+.      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence            45667777777777776655443  22222         2466777777 667788999999999999987665      


Q ss_pred             HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                         ..++..+++|..++++.||...+.+|+-.|+++..+.       .+..|-.++.+.+.-||+.|+.+++-+...+++
T Consensus       585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence               3455667777666689999999999999998765532       234444556677778888898888887776644

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.0071  Score=59.35  Aligned_cols=223  Identities=12%  Similarity=0.147  Sum_probs=143.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc
Q 014864          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (417)
Q Consensus       164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  243 (417)
                      -+..+.++-+.++..++..|..+..... -...+...+++...+..+ .+.|+-+.-+|...+..||.-.|       ..
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~  802 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------ED  802 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hh
Confidence            3344555667889999999999997553 345667788889999999 88899999999999999998644       45


Q ss_pred             hHHHHHHhh-cCCC---hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864          244 ALPALAHLI-HSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       244 ~l~~L~~ll-~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~  319 (417)
                      ++|-+...- +..+   ++.+-.+-.++.++...-.+......+ -++...+...++++...|..++.++|++|......
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            566666532 2221   122222224444444333332222222 35666777778888888999999999999765533


Q ss_pred             HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---HCCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 014864          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI---EANIIGPLVALLEN-AEFDIKKEAAWAIS  395 (417)
Q Consensus       320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~i~~L~~~l~~-~~~~v~~~a~~~L~  395 (417)
                      ....+ ..++..++.+.+.+..+-+|+.|+..+..+..+.....-.+.   ..+....+...... ++..++..|+.++-
T Consensus       882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            33222 234556666666665889999999999999876554333322   22334444444443 45567777777775


Q ss_pred             Hh
Q 014864          396 NA  397 (417)
Q Consensus       396 nl  397 (417)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            54

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.35  E-value=0.011  Score=53.51  Aligned_cols=202  Identities=12%  Similarity=0.113  Sum_probs=144.4

Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh----hhhh----chHHHHHHhhcCCChHHHHHHHHH
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF----DQVS----PALPALAHLIHSNDDEVLTDACWA  266 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~----~~l~~L~~ll~~~~~~v~~~a~~~  266 (417)
                      ..+...+.+..|+..+ ..-+-+.++.++.++.++.+.......    ..+.    .++..|+..-.  ++++...+-..
T Consensus        70 ~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence            3445667788888888 777889999999999999998633321    1222    23333443333  45554555555


Q ss_pred             HHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchh
Q 014864          267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKS  343 (417)
Q Consensus       267 l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~  343 (417)
                      |..++. .+...+.++....+..+...+..++-++...|..++..+...+.......+..   .++.....+|.++ +.-
T Consensus       147 lRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYv  224 (335)
T PF08569_consen  147 LRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYV  224 (335)
T ss_dssp             HHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHH
T ss_pred             HHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeE
Confidence            555554 45566778888899999999999999999999999999998888776666654   4556788888888 999


Q ss_pred             HHHHHHHHHHHHhcC--CHHHH-HHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          344 IKKEACWTVSNITAG--NREQI-QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       344 v~~~a~~~L~nl~~~--~~~~~-~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      +|+.+...|+.+...  +...+ +++-+..-+..++.+|.+....++.+|..++.-++..+
T Consensus       225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            999999999999863  33333 33335566888999999999999999999999998886

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.35  E-value=0.01  Score=48.73  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC-HHHHHHH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQ  209 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~L~~l  209 (417)
                      +.+|..++.+++-++...+...+     ..++.+...|.++++.+|.+|+.+|..|...+.     +.-.|. +..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999885454332     568899999999999999999999999985543     112233 3677888


Q ss_pred             hcCCCchhHHHHHHHHHhhhhcC
Q 014864          210 LNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      + .+++++++..|..++..+...
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHh
Confidence            8 888999999999999999987

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.017  Score=56.05  Aligned_cols=63  Identities=11%  Similarity=0.065  Sum_probs=47.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~  147 (417)
                      ..+-+.|+.+++-++-..++.++++=.   .+..     ...+|.+...|.+.+ +-+|..|.-++..|-..
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckLkE---~ELl-----epl~p~IracleHrh-sYVRrNAilaifsIyk~  164 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKLKE---PELL-----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKN  164 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhcCc---HHHh-----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhh
Confidence            455667788888889888888887721   2222     235888999999988 89999998888887764

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.33  E-value=0.013  Score=52.64  Aligned_cols=191  Identities=19%  Similarity=0.219  Sum_probs=115.1

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh--hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC--ChHHHHH
Q 014864          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQA  280 (417)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~~  280 (417)
                      ..+..+ .+.....+..++..+.++........+.  ....++..+.+.++....+-+..++.+++-++-.  .......
T Consensus        47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            334444 4445778888888888888765433322  2245677788888777655555666666665443  2233344


Q ss_pred             HHHcCChHHHHhhcCCCC--hhhHHHHHHHHHHhhc---CChHHHHHHHHcCChH--HHHHhhcCC---------CchhH
Q 014864          281 VIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVT---GDDMQTQCVIEYQALP--CLLNLLSGN---------YKKSI  344 (417)
Q Consensus       281 ~~~~~~~~~L~~~l~~~~--~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~--~L~~ll~~~---------~~~~v  344 (417)
                      +++. +.|.|...+.+..  +.+|..++.+|+-++.   .........++  .+.  +.....+..         .++.+
T Consensus       126 i~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            5554 6788888887664  4566777778877654   22222221111  233  112222221         13467


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          345 KKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       345 ~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ...|+.+-+-+... .+..+....+ ..+|.|..+|.+.+.+||..|..+|.-+...
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            77777665666553 2323443333 4689999999999999999999998877554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.24  E-value=0.0051  Score=60.74  Aligned_cols=190  Identities=18%  Similarity=0.141  Sum_probs=131.3

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-------------ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------------PFDQVSPALPALAHLIHSNDDEVLTDACWALSY  269 (417)
Q Consensus       203 i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-------------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  269 (417)
                      ...++.++.   ++++-..+..+++-+..+.+..             .......++|.+++.+.+.+...+..-+.+|++
T Consensus       817 a~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            345666662   2344445555555555443211             112236789999999987777788888888888


Q ss_pred             hccCChHHHHHHHH--cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCc--hhHH
Q 014864          270 LSDGTNDKIQAVIE--AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIK  345 (417)
Q Consensus       270 l~~~~~~~~~~~~~--~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~~v~  345 (417)
                      +..+-+..  .+..  ..++|.|++.|+-+|..++..++.++..+....+.....- -.-++|.++.+-.++.+  ..||
T Consensus       894 Vl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~-~~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  894 VLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH-LSTLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-HhHHHHHHHhcCCCCCcchhHHH
Confidence            87665542  2222  2468888999999999999999999998887666443322 23578888888776622  6799


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                      ..|..+|..++..-|...-......++..|...|+++-.-+|++|..+=.+-.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            99999999999854543333445578889999999988899999988755543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.23  E-value=0.02  Score=54.13  Aligned_cols=207  Identities=19%  Similarity=0.186  Sum_probs=127.6

Q ss_pred             ChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC----CCchhHHHHHHHHHhhhhcCCC
Q 014864          160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----QPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       160 ~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .+..++.+.. ..++..+..++.+++.++..-+.. + .. ...+..+...+..    ...........|+..-+.....
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            3444555443 345667777777777776442111 0 00 0122333332211    1234455666676666655421


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH--------HHHHHHHcC----ChHHHHhhcCCCChhhH
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND--------KIQAVIEAG----VFPRLAEFLMHPSPSVL  302 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~~~~~----~~~~L~~~l~~~~~~v~  302 (417)
                          ......+..|+.++.+  +++...++.++..+....++        .++.+.+..    ++|.|+......+...+
T Consensus       267 ----~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k  340 (415)
T PF12460_consen  267 ----PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK  340 (415)
T ss_pred             ----chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence                1223456677777765  66777888888888765232        233444443    45666666666666688


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Q 014864          303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA  377 (417)
Q Consensus       303 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  377 (417)
                      ...+.+|+.+..+-+...-.---..++|.+++-|..+ +..++..+..+|..+....++.+..-++ .+++.|++
T Consensus       341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            8999999999998886554333347899999999988 8999999999999999877765544333 45665554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.041  Score=51.91  Aligned_cols=211  Identities=14%  Similarity=0.159  Sum_probs=119.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~  197 (417)
                      .|.|-.+|++.. +.+..+++++++.++..+  .....++ ..+..|-.+|.++....+-.|+++|..|+...|..  ..
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~  339 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VS  339 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--ee
Confidence            667777888777 799999999999988743  1222222 46777888899999999999999999999877642  11


Q ss_pred             HhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (417)
Q Consensus       198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  277 (417)
                      .   +-+.+-.++ .+.+..+-.   +++..|............-..+|.++.=+.++-.-+..++++.|+.+-   +..
T Consensus       340 v---cN~evEsLI-sd~Nr~Ist---yAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k  409 (898)
T COG5240         340 V---CNKEVESLI-SDENRTIST---YAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---PSK  409 (898)
T ss_pred             e---cChhHHHHh-hcccccchH---HHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---cHH
Confidence            1   112223333 444444433   344444443222222222333333333333333445566666666553   222


Q ss_pred             HHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          278 IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       278 ~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      ...     .+..|...|. .+..+.+..++.+|+.+....++...     .++..|..++.+.   +.-+-+...|+-+.
T Consensus       410 ~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL~iLG  476 (898)
T COG5240         410 KLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRILGILG  476 (898)
T ss_pred             HHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHHHHhc
Confidence            111     2333443333 34566778888888888776664443     2355667777654   33334445555554


Q ss_pred             c
Q 014864          357 A  357 (417)
Q Consensus       357 ~  357 (417)
                      .
T Consensus       477 ~  477 (898)
T COG5240         477 R  477 (898)
T ss_pred             c
Confidence            3

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.17  E-value=0.013  Score=56.01  Aligned_cols=254  Identities=13%  Similarity=0.077  Sum_probs=132.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (417)
Q Consensus       119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~  198 (417)
                      ..++...+ ++ +..+..|+..+......-|+...     .++..++.++.+.+..|+.+|+..|..+|.+.++....  
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            33444444 34 78899999999998888777655     56788999999999999999999999999988765554  


Q ss_pred             hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc---CCChHHHHHHHHHHHH-hccCC
Q 014864          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGT  274 (417)
Q Consensus       199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~l~~-l~~~~  274 (417)
                         +...|+++| +..++.-...+-++|..+...+|       .+.+..+...+.   +.|+.+++.++..|.. +-.-.
T Consensus        97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               466889999 67776666777777777776543       344555555554   4677889888876643 22111


Q ss_pred             hHHHH--HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc----CChHHHHHHHHcCChHHHHHhh------cCCCch
Q 014864          275 NDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDMQTQCVIEYQALPCLLNLL------SGNYKK  342 (417)
Q Consensus       275 ~~~~~--~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~  342 (417)
                      .+...  .-.+.-++..+..+|.+-...--...+.+|..+-.    .+....+.+     ++.+....      ... ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence            11000  00111244556667765444334445555555544    122222322     33333222      222 33


Q ss_pred             hHHHHHHHHHHH----Hhc--CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864          343 SIKKEACWTVSN----ITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       343 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      +.......++..    +..  .+.....++.+ .++|.+-.+    +.+.+...+.++..++..+..
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~  301 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGA  301 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCc
Confidence            333222222222    222  23334444444 466644333    446677778888777777643

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.15  E-value=0.12  Score=52.17  Aligned_cols=216  Identities=15%  Similarity=0.163  Sum_probs=128.4

Q ss_pred             hCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---CCCc----hhHHHHHHH
Q 014864          157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW  224 (417)
Q Consensus       157 ~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~----~~~~~~a~~  224 (417)
                      +.|++..++.++.+     ....+....+..|...+ .-+.+|..+++.|+++.|+..+.   +...    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            35888888888865     23445555555555544 44668999999999999998874   2322    556666665


Q ss_pred             HHhhhhcCCCCCCh---------h----hhhchHHHHHHhhcCC----ChHHHHHHHHHHHHhccCChHHHHHHHHcCCh
Q 014864          225 TLSNFCRGKPQPPF---------D----QVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVF  287 (417)
Q Consensus       225 ~l~~l~~~~~~~~~---------~----~~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~  287 (417)
                      ++-.+.........         .    .....+..+++.+.++    ++.+....++.|-+|+.+..+..+.+++. + 
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F-  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F-  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H-
Confidence            55555443211100         0    1233466666666554    68899999999999999999888777665 2 


Q ss_pred             HHHHhhcCCC--ChhhHHHHHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhcCCCchh--------HH------
Q 014864          288 PRLAEFLMHP--SPSVLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNYKKS--------IK------  345 (417)
Q Consensus       288 ~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~~--------v~------  345 (417)
                      ...+++=.-+  ...--...+.++..++.+-      ....+.+++.|++...+..|... .|.        .+      
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-CcccccCCCHHHHHHhcCC
Confidence            2222321111  0010122345555555433      35667788999999888887654 222        11      


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Q 014864          346 --KEACWTVSNITAGNREQIQAVIEANIIGPLVA  377 (417)
Q Consensus       346 --~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  377 (417)
                        ..+...|.-++.+... .+.++..++++.+-.
T Consensus       351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~  383 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHR  383 (802)
T ss_pred             cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHH
Confidence              3456666666666443 344455666654433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.10  E-value=0.01  Score=57.96  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=144.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ++...++.+..-..+..++.+..+|..-.+.. .+.     ...+++.+...+.+...-.-.++++.+++|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER-----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            45666777666666777777777776222221 111     123466666666654423345789999999999888888


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      +.+...-.++.+-.++...++.++..++..+.||..+.--+...+.+...=.++........++.+...++.++..++..
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv  657 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV  657 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence            88888777888888888899999999999999998776655556666333333333332445666666777666655544


Q ss_pred             CCCC-C-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864          233 KPQP-P-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (417)
Q Consensus       233 ~~~~-~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~  293 (417)
                      ..+. . ..........+..++.+.+.+++...+..+.++.....+....+.....++.+..+
T Consensus       658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            3221 2 33446677788889999999999999999988776666666666666555544433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.017  Score=56.80  Aligned_cols=226  Identities=11%  Similarity=0.076  Sum_probs=148.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (417)
Q Consensus       119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~  198 (417)
                      ...+..+.++. +.++-.++..|..+.... +....+...+++...+..|.+.++-+--.|+..+..+|.--++      
T Consensus       730 qeai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------  801 (982)
T KOG4653|consen  730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------  801 (982)
T ss_pred             HHHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch------
Confidence            33444455555 789999999999999853 4555666668999999999999999999999988888754332      


Q ss_pred             hcCCHHHHHHHhcCCC---chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          199 SQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       199 ~~g~i~~L~~ll~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                        .+++.+........   .++.+-....++.++...-...........+..+++.++++|...+..++..+++++....
T Consensus       802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence              35666666432221   2455555667788777765444444456677788888888888889999999999986443


Q ss_pred             HHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWT  351 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~  351 (417)
                      ......+.. ++..++.+.. ++++.+|..|+..+..+..+.....-.+...   .....+........+..++..|+.+
T Consensus       880 ~~vsd~~~e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFFHE-VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHHHH-HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            222222222 4455555554 4568899999999999988776443333322   3333444444444355666667666


Q ss_pred             HHHH
Q 014864          352 VSNI  355 (417)
Q Consensus       352 L~nl  355 (417)
                      +-.+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            5544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.04  E-value=0.061  Score=48.36  Aligned_cols=170  Identities=16%  Similarity=0.053  Sum_probs=114.7

Q ss_pred             CChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCC
Q 014864          159 GAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (417)
Q Consensus       159 g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~  237 (417)
                      +.++.|+ ..+.+.++.+++.++.+||-.|--+......     .+..+...+ +..+..++..++.++..+....+...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3444444 5778899999999999999998655533222     466677777 55689999999999998876542221


Q ss_pred             h---------hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC----CChhhHHH
Q 014864          238 F---------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH----PSPSVLIP  304 (417)
Q Consensus       238 ~---------~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~----~~~~v~~~  304 (417)
                      .         ......+..+...+.+.+++++..++..++.|.-...-..    ...++..|+-..-+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1         1224677888899998999999999999999754322111    01234444333322    34566766


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC
Q 014864          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN  339 (417)
Q Consensus       305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  339 (417)
                      --..+-..+..+... +..+...++|.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666777777777655 3466778888888888765

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.03  E-value=0.11  Score=46.72  Aligned_cols=171  Identities=15%  Similarity=0.115  Sum_probs=108.4

Q ss_pred             CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchH
Q 014864          116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRC  193 (417)
Q Consensus       116 g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~-~~~~~  193 (417)
                      +++..|+ ..+.+.+ +.+|..|+.||+-.+--+.+...     ..++.+...+..++..++..|+.++..+.. ++...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455555 6778888 89999999999999886553332     346667777777799999999999999873 22211


Q ss_pred             HHHHH-------hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC----CChHHHHH
Q 014864          194 RDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD  262 (417)
Q Consensus       194 ~~~~~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~  262 (417)
                      -+...       ....+..+.+.+ .+.+++++..++..++.|........   ...++..|+-+.-+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11111       223455666777 56688999999999999887753333   12233333322222    24555555


Q ss_pred             HHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC
Q 014864          263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (417)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~  297 (417)
                      ....+-..+..+.... ..+...+++.+-.+....
T Consensus       176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence            5555555565555543 444455777777766544

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.17  Score=49.49  Aligned_cols=280  Identities=16%  Similarity=0.116  Sum_probs=162.5

Q ss_pred             hCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhC--CCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHH
Q 014864          115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (417)
Q Consensus       115 ~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~n  185 (417)
                      .|+++.+...|...       +++.-.+.|++.+.++.+  ..+.-...+.+.-+++.++..++++.--++..++..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            57899999988421       123344566677777665  334444555665677888888888888899999999999


Q ss_pred             hhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh--hhhhchHHHHHHhhcCCChHHHHHH
Q 014864          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSPALPALAHLIHSNDDEVLTDA  263 (417)
Q Consensus       186 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~L~~ll~~~~~~v~~~a  263 (417)
                      +..+   +++..+-..+.+...+++ ++.+..++..|+-++.-+..+......  ..+.+.++.|+.+-+.-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9543   334444444666777788 557888888888888888877521111  1123334444444444455655555


Q ss_pred             HHHHH-HhccCC----hHHHHHHHHcCChHHHHhhcCCCC------hhhHHHHHHHHHHhhc-----CChHHHHHHHHcC
Q 014864          264 CWALS-YLSDGT----NDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT-----GDDMQTQCVIEYQ  327 (417)
Q Consensus       264 ~~~l~-~l~~~~----~~~~~~~~~~~~~~~L~~~l~~~~------~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~  327 (417)
                      +..+. +.++.-    .+....+++. ++.....++.+++      .+-+..|...|..+.+     .+....-.-+...
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~q-Flkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s  641 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVRQ-FLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS  641 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHHH-HHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            54332 232211    1111111111 2223333333321      1233444444443321     1111112223446


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCH-HHHHHHHHHHHHhhCCCC
Q 014864          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF-DIKKEAAWAISNATSGGT  402 (417)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~a~~~L~nl~~~~~  402 (417)
                      ..|.+--++++. -.++-.+|+-.+-+.+.-..+--.  +.-|+.+.+.+++.+... ..-.++.-++.|+...|.
T Consensus       642 lypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         642 LYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             HHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence            677777777777 778888999888888754333221  123567777777776653 677899999999988873

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.01  E-value=0.058  Score=51.76  Aligned_cols=61  Identities=13%  Similarity=0.142  Sum_probs=31.2

Q ss_pred             ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC----CC-----chhHHHHHHHHHHHHhcCCHHH
Q 014864          298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NY-----KKSIKKEACWTVSNITAGNREQ  362 (417)
Q Consensus       298 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~-----~~~v~~~a~~~L~nl~~~~~~~  362 (417)
                      .+..+...+++++.++.......    ....++.+..+|..    ..     +....+...+++.+++...|+.
T Consensus       281 ~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~  350 (556)
T PF05918_consen  281 PEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNS  350 (556)
T ss_dssp             ---HHHHHHHHHHHHHTT----T----HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THH
T ss_pred             ChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcch
Confidence            55678888999988886654211    11234555555421    10     2244556677888888766653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.028  Score=54.83  Aligned_cols=260  Identities=17%  Similarity=0.166  Sum_probs=136.1

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      .+.+=..+.+.+..+...|++++..+...    ....+..  .+..|--+++++. +.+|+.|.++|..++...|.....
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~----~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNT----NSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhcccc----CHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence            34444566678889999999998877432    2333322  5778888899988 899999999999999865543211


Q ss_pred             -------HH-hC---CChhHHHHhhCCCCH----HHHHHHHHHHHHhhCCCch-----HHHH-----HHhcCCHHHHHHH
Q 014864          155 -------VI-DH---GAVPIFVKLLYSPSD----DVREQAVWALGNIAGDSPR-----CRDL-----VLSQGGLVPLLAQ  209 (417)
Q Consensus       155 -------i~-~~---g~i~~L~~ll~~~~~----~i~~~a~~~L~nl~~~~~~-----~~~~-----~~~~g~i~~L~~l  209 (417)
                             ++ +.   =+..++..+|+....    .+..+.....++++.+...     .+..     ....+.+..|-++
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                   11 10   012233333433222    2222333333333221100     0000     0112223344444


Q ss_pred             hcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 014864          210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR  289 (417)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  289 (417)
                      |.++..-+..+.+..++..+....|...    ..++..|..++.+.  +....+...|..|....+.   .......+..
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsK----e~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~---a~~Pskyir~  470 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSK----ERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK---APNPSKYIRF  470 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchh----hHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---CCCcchhhHH
Confidence            4444444555555555555554432211    23334444444322  1222223333333211110   0000123334


Q ss_pred             HHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       290 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      +.+.+--.+..++..|+.++.++..+++....     .+.-.+...+.+. +.++|..|...|.++-
T Consensus       471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE  531 (865)
T ss_pred             HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence            44444445667899999999999966653322     3455677778888 9999999999999997

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.00  E-value=0.064  Score=49.39  Aligned_cols=147  Identities=14%  Similarity=0.205  Sum_probs=103.9

Q ss_pred             CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHH-HHHHHhccCChHHHHH
Q 014864          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC-WALSYLSDGTNDKIQA  280 (417)
Q Consensus       202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~-~~l~~l~~~~~~~~~~  280 (417)
                      ++..++..+.++.+...+..|+..|..+|...|..-+....-++..+++.-.+.++++...|. .|+.-++.+.+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            466778888666889999999999999999877666655555666666655555555544444 3444455454432   


Q ss_pred             HHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       281 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                           .+..+..++...+......++..+..++..-....-..+-..+.|.+++..++. +..||+.|+++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 233445555557777778888888888866554333344457899999999999 99999999999999875

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.34  Score=48.95  Aligned_cols=323  Identities=13%  Similarity=0.069  Sum_probs=176.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC--
Q 014864           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--  158 (417)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--  158 (417)
                      .++|+--.++-.|++.+..+.+.+   ..+...-..++......|.+++.-.++.+|+-+|..+.++.+.....+...  
T Consensus       470 ~f~s~~g~Lrarac~vl~~~~~~d---f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp  546 (1010)
T KOG1991|consen  470 EFQSPYGYLRARACWVLSQFSSID---FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP  546 (1010)
T ss_pred             hhcCchhHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence            345566678888999999886443   111112233466666777744437899999999999998766544434332  


Q ss_pred             CChhHHHHhhCCCCHHHHHHHHH-HHHHhhCCCchHHHHHHhcCCHHHHHHHhcC----C-CchhHHHHHHHHHhhhhc-
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVW-ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q-PKLSMLRNATWTLSNFCR-  231 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~-~~~~~~~~a~~~l~~l~~-  231 (417)
                      +.+..|+++.+.-+.+....++. .++..+..-..+...+ .+......++++..    + .+.+-.-.|..+|..+.. 
T Consensus       547 ~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti  625 (1010)
T KOG1991|consen  547 PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI  625 (1010)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence            45666777776533333333333 3344443322222222 22245566677742    1 122233334444433332 


Q ss_pred             --CC---CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHH
Q 014864          232 --GK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (417)
Q Consensus       232 --~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~  306 (417)
                        .-   |.........++|.+-..|.++-.++-+.++..+.+++....+....+  -|+++.+.+.+......-.....
T Consensus       626 l~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~  703 (1010)
T KOG1991|consen  626 LLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMM  703 (1010)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHH
Confidence              11   211222234566777777777777787888887777765543322222  25677788888877767777788


Q ss_pred             HHHHHhhcCChHHHHHHHHc-----CChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc
Q 014864          307 RTVGNIVTGDDMQTQCVIEY-----QALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE  380 (417)
Q Consensus       307 ~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~  380 (417)
                      -+|.|+.+.....   +...     -++..+..++.+.. ...=...||..+.-+.-.....++..+. -++...+..+.
T Consensus       704 ~~l~N~vt~g~~~---~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ip-lf~~~a~~~l~  779 (1010)
T KOG1991|consen  704 PALHNYVTYGTPS---LLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIP-LFLELALSRLT  779 (1010)
T ss_pred             HHHhhheeeCchh---hhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhH-HHHHHHHHHHh
Confidence            8888876543321   2221     12334444555431 2333455777766665422222222111 12222223333


Q ss_pred             c--CCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcC
Q 014864          381 N--AEFDIKKEAAWAISNATSGGTHEQIKYEHTFC  413 (417)
Q Consensus       381 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g  413 (417)
                      .  .....+..++.++.|.........+..|-+.|
T Consensus       780 ~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~  814 (1010)
T KOG1991|consen  780 REVETSELRVMLLEVVINALYYNPKLTLGILENQG  814 (1010)
T ss_pred             ccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcC
Confidence            3  45678888888888887776666666665554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.89  E-value=0.11  Score=44.85  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh
Q 014864          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL  210 (417)
Q Consensus       132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll  210 (417)
                      .....|+.+|--++--.|..+..+.....+..|+.+|. ...+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            34556778888888877999999999999999999995 46789999999999999999999999999999999999999


Q ss_pred             cCC-CchhHHHHHHHHHhhhhcCC
Q 014864          211 NGQ-PKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       211 ~~~-~~~~~~~~a~~~l~~l~~~~  233 (417)
                      +.. .+.+++-.++.+|+-.....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            644 37888888888887766554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.86  E-value=0.039  Score=47.20  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=101.1

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHH-------hhcCCCC--h---hhHHHHHHHHHHhhcCChHHHHH
Q 014864          256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLA-------EFLMHPS--P---SVLIPALRTVGNIVTGDDMQTQC  322 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~-------~~l~~~~--~---~v~~~a~~~L~~l~~~~~~~~~~  322 (417)
                      +++.++.|+.-|+.--+..++....+-.+ |.+..|+       +.+..+.  .   .-...|+..+..++++ ++....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            56667777777766554444444444333 4444443       2333332  1   2234455556666664 445566


Q ss_pred             HHHcCChHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       323 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      ++++.+.-.|..+|+...    .+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.+..-.|.-|.+.+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            889888888888886542    35788899999999987 6788899999999999999999999989999999999998


Q ss_pred             hCCCCHHHHHHHH
Q 014864          398 TSGGTHEQIKYEH  410 (417)
Q Consensus       398 ~~~~~~~~~~~l~  410 (417)
                      ..  +...+.|++
T Consensus       167 L~--dd~GL~yiC  177 (262)
T PF04078_consen  167 LL--DDVGLNYIC  177 (262)
T ss_dssp             HH--SHHHHHHHT
T ss_pred             Hc--chhHHHHHh
Confidence            87  456566554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.85  E-value=0.17  Score=50.75  Aligned_cols=197  Identities=21%  Similarity=0.216  Sum_probs=124.2

Q ss_pred             HHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchH--HHHHHhhcCCCh-H
Q 014864          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL--PALAHLIHSNDD-E  258 (417)
Q Consensus       182 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~~~-~  258 (417)
                      +|+++..+.+.....+++.|++..+...+..-.+.++...++..+.+++...+..........+  ..+..++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            4667888888888899999999999999976778899999999999999876433332222222  233334444443 7


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HHHhhc
Q 014864          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC-LLNLLS  337 (417)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~ll~  337 (417)
                      ....++..++.+....++.......               +.+...-..++........   . +.....+.+ +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~-~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---R-VINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---e-ehhhhhcchhHHHHhc
Confidence            7777777777776554431111111               1122222222222222111   1 111222333 556666


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 014864          338 GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNA  397 (417)
Q Consensus       338 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl  397 (417)
                      ....+....-|.|++.+++..+++..+.+.+.++++.+.+.-.. ...+++.++...+.++
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            55577889999999999999888888888889999888776432 2566777776666544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.84  E-value=0.0019  Score=48.03  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      .++..|+.+|..+.++.+..-||.=|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3577899999555488888999999999998777777766678999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.83  E-value=0.11  Score=47.79  Aligned_cols=184  Identities=10%  Similarity=0.082  Sum_probs=111.7

Q ss_pred             chhHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh
Q 014864          215 KLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  292 (417)
                      ..+-+..|+.-|..+........+ .....++..+++.|.+ .++..+.-+++.|..++.+......--.+ -.+..++.
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            344455555534433333222233 3346677778888877 57788889999999998876543211111 13445555


Q ss_pred             hcCCCChhhHHHHHHH-HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Q 014864          293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN  370 (417)
Q Consensus       293 ~l~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~  370 (417)
                      .-.+.++.+...|... +.-+++..+.+.        +..+..++... +...-..+...+..++.. +.+..-.++. .
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d  448 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D  448 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence            5555555555444444 344444444332        23344445445 565566666788888763 4444444443 7


Q ss_pred             CHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-HHHHHHH
Q 014864          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGT-HEQIKYE  409 (417)
Q Consensus       371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~l  409 (417)
                      +.|.+++...+....||+.|+++|.-+..... .+.-++|
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL  488 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL  488 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence            99999999999999999999999998877655 3333444

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.79  E-value=0.039  Score=47.17  Aligned_cols=187  Identities=14%  Similarity=0.129  Sum_probs=121.6

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCcHH-HH-HHhCCHHHHHHhh-------cCCC-C---HHHHHHHHHHHHHHhCCCchhH
Q 014864           86 DSGVQYECTTQFRKLLSIERSPPIE-EV-IRSGVVPRFVEFL-------LRED-Y---PQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~~~~-~~-~~~g~i~~Lv~lL-------~~~~-~---~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +++.+..|+..|.+--..  .+... .+ -.-|.+..|++-+       +.+. .   +.-...|+..|-.++++ ++.+
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHH
Confidence            677899999998876433  23322 22 2556666665532       2221 0   12334556666677775 8899


Q ss_pred             HHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhh-CCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864          153 KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l  226 (417)
                      ..++++.+.-.|..+|+.     +.+.++-..+.++|.+. .++++....+...++++..++.+ ...++-.+..|...+
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence            999998888777778764     23668888999999998 46677888899999999999999 555666666777777


Q ss_pred             hhhhcCCC--------CCChhhhhchHHHHH-HhhcCCChHHHHHHHHHHHHhccCChH
Q 014864          227 SNFCRGKP--------QPPFDQVSPALPALA-HLIHSNDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       227 ~~l~~~~~--------~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                      ..+..++.        ...+..+..++..++ .+...+++.+...+++|...|++++..
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra  222 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA  222 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence            66665431        112233344444433 344567889999999999999988754

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.74  E-value=0.02  Score=58.33  Aligned_cols=142  Identities=18%  Similarity=0.174  Sum_probs=111.5

Q ss_pred             ChhHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864          160 AVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (417)
Q Consensus       160 ~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~  235 (417)
                      ..|.++...+.    .+++++..|.-+|+.+..-+..+...     .++.|+..+..++++-++.+++-+++.|+-..|+
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            45666666643    67999999999999998766554433     6889999998899999999999999999877553


Q ss_pred             CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcC
Q 014864          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (417)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~  315 (417)
                          .+...-+.|...|++.++.|+..|+..+++|.-++.     +--.|.++.+..++.+++..++.-|=...-.++..
T Consensus       995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence                335566788899999999999999999999975542     33348899999999999988887776555445433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.68  E-value=0.0027  Score=35.06  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=26.2

Q ss_pred             CHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          371 IIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ++|.+++++.+++++||..|+++|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.66  E-value=0.0031  Score=46.96  Aligned_cols=71  Identities=17%  Similarity=0.268  Sum_probs=59.3

Q ss_pred             ChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       286 ~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ++..|+.+|. +.++.+..-||.=||.++...+.....+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            5788899994 44778888899999999999998888777789999999999999 99999999999987754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.62  E-value=0.21  Score=42.12  Aligned_cols=144  Identities=14%  Similarity=0.158  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhCCC-chhHHHHHhCCCh
Q 014864           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAV  161 (417)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i  161 (417)
                      ..-...|+..+.-++|.  ++....+.+..+=-.|-.+|...+    .+-+|..++.+++.+...+ .+....+...++|
T Consensus        93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            34455566666666654  566777888876556666665432    3679999999999999854 4556667788999


Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH------HHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL------VLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~------~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      |..++.+..+++.-+..|..++..|..++.+..-.      +.. .-.+..++..+.+.+++.+...++.+..+|+..
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998776543211      111 113444555554677888889999999888876

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.60  E-value=0.056  Score=49.83  Aligned_cols=143  Identities=17%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             HHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh-hc--CCCChhhHHHHHHHHHHhhcCChH--
Q 014864          245 LPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FL--MHPSPSVLIPALRTVGNIVTGDDM--  318 (417)
Q Consensus       245 l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-~l--~~~~~~v~~~a~~~L~~l~~~~~~--  318 (417)
                      .+.+-+-+...| ..-+..|+..+..|+.........++.. .+..++. .-  .+.++.-+..|++.++.++.....  
T Consensus       212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~  290 (370)
T PF08506_consen  212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK  290 (370)
T ss_dssp             HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred             HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence            344444444333 4456778888888876544333222221 2222222 11  134678888999999999875532  


Q ss_pred             ----------HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHH
Q 014864          319 ----------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (417)
Q Consensus       319 ----------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  388 (417)
                                ....++...++|-|. - .....+-++..|++.+..+-..-+..  .+.  +++|.++..|.+++.-|..
T Consensus       291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~~--~l~--~~~~~l~~~L~~~~~vv~t  364 (370)
T PF08506_consen  291 SGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPKE--QLL--QIFPLLVNHLQSSSYVVHT  364 (370)
T ss_dssp             TB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH--HHH--HHHHHHHHHTTSS-HHHHH
T ss_pred             CCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCHH--HHH--HHHHHHHHHhCCCCcchhh
Confidence                      234455566666665 1 22237889999999999998743321  222  4899999999999999999


Q ss_pred             HHHHHH
Q 014864          389 EAAWAI  394 (417)
Q Consensus       389 ~a~~~L  394 (417)
                      .|+.++
T Consensus       365 yAA~~i  370 (370)
T PF08506_consen  365 YAAIAI  370 (370)
T ss_dssp             HHHHHH
T ss_pred             hhhhhC
Confidence            998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.55  E-value=0.026  Score=38.18  Aligned_cols=66  Identities=21%  Similarity=0.323  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcC
Q 014864          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKYEHTFC  413 (417)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g  413 (417)
                      .+.|.|+++++++. +.-+..+.+.++++.++++.. ++...+|-.|.++|+-++.  +.+-.+.|-+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999874 556677777899999999987 4568999999999999887  556666666554

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.53  E-value=0.82  Score=43.97  Aligned_cols=286  Identities=13%  Similarity=0.105  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (417)
                      ..+..|+..++..+...+-..+..+     ...--.++.....++.|..+...|..+..+.........     ..+...
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~   74 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRD   74 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHH
Confidence            4567777788777665433222222     223334555555578888888888888886543211111     122333


Q ss_pred             hC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC--------------------------CchhHHH
Q 014864          168 LY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ--------------------------PKLSMLR  220 (417)
Q Consensus       168 l~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--------------------------~~~~~~~  220 (417)
                      +. ...++-...-+.+|..|+.++...  ...+.+..+.|..-+...                          .+.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            33 334444556667777777666544  224566666666555110                          0222334


Q ss_pred             HHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHhhcC
Q 014864          221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       221 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~~l~  295 (417)
                      .....+.|+.... .......+.+.+..++.+.. +.++.....++..+-.+..   -+.+....     ++..|.... 
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~-----~i~vLCsi~-  226 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSP-----CIEVLCSIV-  226 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHH-----HHHHHhhHh-
Confidence            4444445555443 22233344445555444432 2223333333333222221   11111111     122222221 


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHH-HHHHHHC
Q 014864          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQ-IQAVIEA  369 (417)
Q Consensus       296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~  369 (417)
                       ...+....+-.++.||+...-...       .+..|..+|.++     .+..+.+-|...+..+..+..++ ...+--.
T Consensus       227 -~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~  298 (464)
T PF11864_consen  227 -NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS  298 (464)
T ss_pred             -cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence             222566778888888886544322       356677788322     14566778889999888765322 2222222


Q ss_pred             C--CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          370 N--IIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       370 ~--~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      -  +++.+...++.+++.+-.+.+..+.++..
T Consensus       299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            2  78888899998888888888888888773

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.52  E-value=0.03  Score=46.52  Aligned_cols=111  Identities=15%  Similarity=0.154  Sum_probs=79.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHh
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA  145 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--------~~~~~~~~a~~~L~~l~  145 (417)
                      ....+++.+.+.....  ..+..|+..+......-++.+++.|++..|+.+|..-        .......+++.||..+.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4567788887765433  5566666666553223356788999999999988631        23688999999999998


Q ss_pred             CCCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhh
Q 014864          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (417)
Q Consensus       146 ~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~  187 (417)
                      .. ......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus       145 n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            86 444555554 689999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.77  Score=42.91  Aligned_cols=255  Identities=12%  Similarity=0.030  Sum_probs=132.2

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC
Q 014864          124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (417)
Q Consensus       124 lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~  202 (417)
                      -..+++ ..++..|+.+|++.+++-|........ -.+..++.-| +..+.+|+-.++.+|..+...-..   .-+..+.
T Consensus       266 ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~  340 (533)
T KOG2032|consen  266 KATDPS-AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYL  340 (533)
T ss_pred             hccCch-hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhc
Confidence            334555 689999999999999986655544443 3344555544 446688988899888887643221   1112223


Q ss_pred             HH---HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh----hhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          203 LV---PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ----VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       203 i~---~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                      ++   .+-.+. ++.+.+++.++...+..|+..........    +.+....++-.|.++++.+ ..||......+.-.-
T Consensus       341 l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l  418 (533)
T KOG2032|consen  341 LNIALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNL  418 (533)
T ss_pred             hhHHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchh
Confidence            33   344444 77788899888888887776542222211    2222233333445566655 456666666553221


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH--HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT--VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~--L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                      . .+..  .++++...    +.+.. +..+...  .-.+....++......     .....++++. -+.+|..+...-.
T Consensus       419 ~-rke~--~~~~q~~l----d~~~~-~~q~Fyn~~c~~L~~i~~d~l~~~~-----t~~~~~f~ss-we~vr~aavl~t~  484 (533)
T KOG2032|consen  419 V-RKEL--YHLFQESL----DTDMA-RFQAFYNQWCIQLNHIHPDILMLLL-----TEDQHIFSSS-WEQVREAAVLKTT  484 (533)
T ss_pred             H-HHHH--HHHHhhhh----HHhHH-HHHHHHHHHHHHHhhhCHHHHHHHH-----Hhchhheecc-hHHHHHHHHHHHH
Confidence            1 1111  11222221    11100 1111100  0011112222222111     1223334444 4567777766666


Q ss_pred             HHhcCC-HHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          354 NITAGN-REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       354 nl~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      +..... +......--.-+...|-.+..++-++++..|..|+..+..
T Consensus       485 ~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  485 RSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            665432 2222222222345566666778889999999999887654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.42  E-value=0.0042  Score=34.27  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ++|.+.++++++ +++||..|+++|+.++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            378899999999 99999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.32  E-value=1.9  Score=45.97  Aligned_cols=81  Identities=12%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHhhcCCh-----------HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864          300 SVLIPALRTVGNIVTGDD-----------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE  368 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~-----------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (417)
                      ......+.++|-++++.+           .+....+..+++..|..+.+.. +..+|..|...|+.+|...|.   ++.+
T Consensus      1187 p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~ 1262 (1692)
T KOG1020|consen 1187 PKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTS 1262 (1692)
T ss_pred             HHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhh
Confidence            455678888999987321           1112244567777788888888 899999999999999986554   3444


Q ss_pred             CCCHHHHHHHhccCCH
Q 014864          369 ANIIGPLVALLENAEF  384 (417)
Q Consensus       369 ~~~i~~L~~~l~~~~~  384 (417)
                      ..+...+...|.+.+.
T Consensus      1263 ~~v~nly~~ila~~n~ 1278 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDNS 1278 (1692)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            4555566666665543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.30  E-value=0.45  Score=40.20  Aligned_cols=138  Identities=16%  Similarity=0.218  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-----ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHH
Q 014864          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-----SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLL  333 (417)
Q Consensus       260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~  333 (417)
                      ..+++..+..++.+++ ....++++.+--.+..+|...     .+..|..++..||.+...++ +....++..+++|..+
T Consensus        96 VcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3456666666666654 455678887777777877643     46789999999999997665 5566677889999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------CCCHHHHHH-HhccCCHHHHHHHHHHHHHhhCC
Q 014864          334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------ANIIGPLVA-LLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       334 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~L~~-~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +.+..+ ++.-+..|.+++..|...+. ...++..        ..++..++. +.+.+++.+-+.++.+..++...
T Consensus       175 rime~G-SelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESG-SELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcc-cHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            999999 89999999999999876421 2222221        123333333 34567889999999999998774

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.15  Score=48.27  Aligned_cols=154  Identities=19%  Similarity=0.175  Sum_probs=105.2

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhh
Q 014864          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (417)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  242 (417)
                      .+-.++.+.++-++...+.+++.--.+..       ..|++..++...-++.+.++++.|+-+|..+|..++        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            34456777788888888777764332222       234677777774477889999999999999998764        


Q ss_pred             chHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          243 PALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       243 ~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      ..++..+++|. +.+..|+...+.+|+-.|.+...+.       .+..|-.++.++..-+|..|+-+++.|...+.+...
T Consensus       585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln  657 (926)
T COG5116         585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN  657 (926)
T ss_pred             chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence            34555566664 4588899999999998888776543       345566677788888999999999999765432211


Q ss_pred             HHHHcCChHHHHHhhcCC
Q 014864          322 CVIEYQALPCLLNLLSGN  339 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll~~~  339 (417)
                      . --.++...+..++.+.
T Consensus       658 p-~v~~I~k~f~~vI~~K  674 (926)
T COG5116         658 P-NVKRIIKKFNRVIVDK  674 (926)
T ss_pred             h-hHHHHHHHHHHHHhhh
Confidence            0 1124455566666544

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.15  E-value=0.71  Score=40.58  Aligned_cols=202  Identities=12%  Similarity=0.102  Sum_probs=141.6

Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC---Chhhh---hchHHHHHHhhcCCC-hHHHHHHHHHH
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP---PFDQV---SPALPALAHLIHSND-DEVLTDACWAL  267 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~---~~~l~~L~~ll~~~~-~~v~~~a~~~l  267 (417)
                      ..+...|.+..+++.+ ..-+-+.+..++.+..++-+..-..   .....   ...+..|+.-  ..+ +++.-.+-..+
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHH
Confidence            3456778888889888 7777888899999999988765211   12222   2333333333  122 33333332233


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhhcCCCchh
Q 014864          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA----LPCLLNLLSGNYKKS  343 (417)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~  343 (417)
                      ..+. ..+...+.+..+.-+.....+++.+.-++...|..+...+.+........++..+.    .+..-.++.++ +.-
T Consensus       150 rEci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv  227 (342)
T KOG1566|consen  150 RECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV  227 (342)
T ss_pred             HHHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence            3322 34445566777778888888888888889999999999998888777766665544    34466678888 999


Q ss_pred             HHHHHHHHHHHHhcC--CH-HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          344 IKKEACWTVSNITAG--NR-EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       344 v~~~a~~~L~nl~~~--~~-~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .++.+...++.+.-+  +. ...+++-+..-+..++.+|.++...++.+|-.+..-++...
T Consensus       228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            999999999999863  22 33444445567889999999999999999999999888875

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.07  E-value=0.42  Score=41.92  Aligned_cols=202  Identities=12%  Similarity=0.111  Sum_probs=135.3

Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH----HHHhcCCHHHHHHHhcCCC-chhHHHHHHHHHhh
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD----LVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSN  228 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~----~~~~~g~i~~L~~ll~~~~-~~~~~~~a~~~l~~  228 (417)
                      .+.++|.+..|+..+...+-+-+..++.+..|+-...-+.+.    .+..  -.+.+-.++.... .+++.-.+...+..
T Consensus        74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            455679999999999888888888888888887643322222    2211  1223333332223 25555555555555


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCC----hHHHHhhcCCCChhhHHH
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIP  304 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~~l~~~~~~v~~~  304 (417)
                      ..+...-.........+......++.+.-++..+|..+...+.......+..++..+.    .+.--.++.+.+.-++..
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            5554332333333555666667777777788899999988887666555555555433    333566788888889999


Q ss_pred             HHHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          305 ALRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       305 a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      ++..+|.+..+.+   ..++++-...-+..+..+|+++ +..++-+|..+..-+.++
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcC
Confidence            9999999986654   3445454557788999999999 999999999998888873

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.03  E-value=0.15  Score=43.88  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh
Q 014864           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL  168 (417)
Q Consensus        89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll  168 (417)
                      ....|+..|.-++--+ ++....+.+...+..|+.+|.....+.++..++.+|..+.-+++.+.+.+-+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            4555778888776664 566666778889999999996554489999999999999999999999999999999999999


Q ss_pred             CC--CCHHHHHHHHHHHHHhhCC
Q 014864          169 YS--PSDDVREQAVWALGNIAGD  189 (417)
Q Consensus       169 ~~--~~~~i~~~a~~~L~nl~~~  189 (417)
                      ++  .+.+++-.++..|.-+...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcc
Confidence            86  5677877787777666543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.02  E-value=0.42  Score=48.47  Aligned_cols=185  Identities=16%  Similarity=0.120  Sum_probs=129.7

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHH
Q 014864           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (417)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  156 (417)
                      .+-..+.+.++..+..|+..+...++...  ....-...|.+-.++.....+.+..+...|+.+|..++...........
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            34445668899999999999999886542  1111223445555666555444488999999999999987555443333


Q ss_pred             hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC--
Q 014864          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--  234 (417)
Q Consensus       157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~--  234 (417)
                      . +..|.|+..+......+++.+..++-.++...+.       ....+.++..+ .+.++.+...+...+........  
T Consensus       335 ~-~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  335 K-NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             H-hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence            3 7889999999988888888888777766653221       11355666666 88888888876666665555432  


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      ..........+|.++....+.+.+|+..+..+++-+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            23345568889999999999999999999988887654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.98  E-value=0.095  Score=55.05  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCCh
Q 014864          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (417)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  299 (417)
                      .++.|+...++...+  -.....+++..++..+..+-..++..|+.||+.+...++..   +....+-..+..-+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            445555555554422  12223577888888889888999999999999998877642   1222233444555667778


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l  379 (417)
                      .||..|+..+|......++....     ....+.+-+.++ ...||+.+...+..+|...|+.-. +.  .+...++.-.
T Consensus       870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~--~~cakmlrRv  940 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IV--DMCAKMLRRV  940 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HH--HHHHHHHHHh
Confidence            99999999999988777755443     355677777777 889999999999999986664211 11  1122222333


Q ss_pred             ccCCHHHHHHHHHHHHHh
Q 014864          380 ENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       380 ~~~~~~v~~~a~~~L~nl  397 (417)
                      ++.+..+++-++.++.++
T Consensus       941 ~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  941 NDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             ccchhHHHHHHHHHHHHH
Confidence            344444777777777665

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.98  E-value=0.028  Score=45.05  Aligned_cols=148  Identities=18%  Similarity=0.133  Sum_probs=96.7

Q ss_pred             CHHHHHHHhcC-CCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014864          202 GLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (417)
Q Consensus       202 ~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~  280 (417)
                      .+..++..+.. ...++++..+.-++..+...   ........+-..+..++...+.+-...++.++..+-...++....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34556666644 55677888888888777411   111112233344445555544455667778888887777765555


Q ss_pred             H-HHcCChHHHHhhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh-HHHHHHHHHHH
Q 014864          281 V-IEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKKEACWTVSN  354 (417)
Q Consensus       281 ~-~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~n  354 (417)
                      + ...|+++.++.++.  ..+..++..++.+|..-|..  +.....+...+++.|-.+++.+.+.. +|..|+-+|+.
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            4 46689999999998  77888889999998766633  33334556678999999996553566 88888887764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.98  E-value=0.065  Score=43.00  Aligned_cols=147  Identities=11%  Similarity=0.057  Sum_probs=88.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      ..++.|+.+|+++....+|.+++++|+.+..-+|...+.+...  .+.-.  -...+........... ++...    .+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~----~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPS----SE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCc----hH
Confidence            3578899999988768999999999999988766554433221  11000  0111111222111111 11111    12


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      ......++..|++.+.+..-..-...++.++.++..............++|.++..+++.++..++...+-|+.|.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2233346788888885544445555677777777755444446667889999999998777777777776666653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.12  Score=45.15  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      ...+...+..|.++|.+...+++..+..|+....+.....+.. ++-.+++-+++....+-..||.+++.+.+.-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667778888899999999999999988777665555554 677788888888888999999999999876554444


Q ss_pred             HHHHcCChHHHHHhh-cCC--CchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          322 CVIEYQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll-~~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      ..     ++.++..| ...  .+.-|+..|-.+|..++.. .|.        .+++.|+..+.+.++.++..++.++.++
T Consensus       166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            32     22233332 221  1567899999999998864 332        3567777888888999999999999888


Q ss_pred             hCCC
Q 014864          398 TSGG  401 (417)
Q Consensus       398 ~~~~  401 (417)
                      ....
T Consensus       233 v~rl  236 (334)
T KOG2933|consen  233 VIRL  236 (334)
T ss_pred             ceec
Confidence            7765

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.86  E-value=1.1  Score=39.18  Aligned_cols=226  Identities=12%  Similarity=0.090  Sum_probs=137.8

Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (417)
                      ..|-..|.++++.+|..|+..|+.+...-+..   .+...-+..|+..+.+. .|......++.++..|...+ ......
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence            34556788899999999999999988665521   12222345555555321 35556666677777777543 222222


Q ss_pred             hhchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHHHhhcCCh
Q 014864          241 VSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       241 ~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      ...++..+.+-...  -....|..+...+..+.....+....+ ..+++..++..+.. .||.....+...+..+...-+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            34444444443322  235677788888888876654433222 23467777777764 478877778777777765544


Q ss_pred             HHHHHHHHcCChHHHHHhhc--------CCC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864          318 MQTQCVIEYQALPCLLNLLS--------GNY-KK--SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (417)
Q Consensus       318 ~~~~~~~~~~~l~~L~~ll~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  386 (417)
                      .       ....+-+.+.+.        .+. ++  -.+..-...|.++...++...     .-.+|.|++-|.++.+.+
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence            1       122333333331        111 22  244455556666666555432     347899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHH
Q 014864          387 KKEAAWAISNATSGGTHE  404 (417)
Q Consensus       387 ~~~a~~~L~nl~~~~~~~  404 (417)
                      |..++.+|..++..-+..
T Consensus       225 K~D~L~tL~~c~~~y~~~  242 (262)
T PF14500_consen  225 KLDSLQTLKACIENYGAD  242 (262)
T ss_pred             HHHHHHHHHHHHHHCCHH
Confidence            999999999988764443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.77  E-value=0.52  Score=43.59  Aligned_cols=265  Identities=18%  Similarity=0.128  Sum_probs=139.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHH-HHHhhCCCchHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWA-LGNIAGDSPRCRD  195 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~-L~nl~~~~~~~~~  195 (417)
                      +..+++=+.+.....+|..++--|+.-+.+ ++.+..+..+|.+..+++.+.+ ++..+...++.+ +.-++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            455555556444468888888888888874 9999999999999999999954 444344444444 444444543 344


Q ss_pred             HHHhcCCHHHHHHHhc--CC----Cchh-----HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc---------CC
Q 014864          196 LVLSQGGLVPLLAQLN--GQ----PKLS-----MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---------SN  255 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~--~~----~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~---------~~  255 (417)
                      .+...+....+++++.  ..    .+..     ........+..                  .+...+.         ..
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~------------------~~~~~~~~~~~~~~~~~~  162 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRS------------------LCKELLSSGSSWKSPKPP  162 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHH------------------HHHHHHhccccccccCCc
Confidence            4445555666677774  11    0000     00011111111                  1111110         00


Q ss_pred             ChHHHHHHHHHHHHhc--------------cCChHHHHHHHHcCChHHHHhhcCC----C-------C-----hhhHHHH
Q 014864          256 DDEVLTDACWALSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLMH----P-------S-----PSVLIPA  305 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~--------------~~~~~~~~~~~~~~~~~~L~~~l~~----~-------~-----~~v~~~a  305 (417)
                      ...-+.-++.++-.++              ...+...+.+...|++..++..+..    .       +     ......+
T Consensus       163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c  242 (361)
T PF07814_consen  163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC  242 (361)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence            0111112222222221              1111123345556777777777641    1       1     1234568


Q ss_pred             HHHHHHhhcCChHHHHHHHHc--CChHHHHHh-hcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH---
Q 014864          306 LRTVGNIVTGDDMQTQCVIEY--QALPCLLNL-LSGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA---  377 (417)
Q Consensus       306 ~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~l-l~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~---  377 (417)
                      +++|-+.+..+.....+.+..  +.++.+... +...  ....+...++.++.|++-.+|.....+...++...+..   
T Consensus       243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~  322 (361)
T PF07814_consen  243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVT  322 (361)
T ss_pred             HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHH
Confidence            888888877666555545433  333333222 2221  03344578889999999888766655554333222111   


Q ss_pred             ---Hh-c-------cCCHHHHHHHHHHHHHhhCCCC
Q 014864          378 ---LL-E-------NAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       378 ---~l-~-------~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                         .+ .       ....+...-++.++.|++.+.+
T Consensus       323 ~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  323 SFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             hhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence               11 1       1235788889999999988753

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.72  E-value=0.075  Score=42.57  Aligned_cols=146  Identities=17%  Similarity=0.132  Sum_probs=98.4

Q ss_pred             HHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        75 l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ++.++..|..  ..++++..++-++.++....     ..-...-+-+.+-..+...+ .+-...++.++..+-.+.++..
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-----~~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA-----REEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHH
Confidence            4566666653  66788888888888885221     11112222344444555544 4577888999999999888877


Q ss_pred             HHHHh-CCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchh-HHHHHHHHHhh
Q 014864          153 KVVID-HGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSN  228 (417)
Q Consensus       153 ~~i~~-~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~a~~~l~~  228 (417)
                      ..++. .|.++.+..++.  ..+..++..++.+|..-|.+. .+|..+.+. +++.|-..+..+++.. ++..|+-+|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            77764 588899999998  678888888888887766554 477776665 6788888885566555 66666655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.67  E-value=1.1  Score=38.65  Aligned_cols=201  Identities=18%  Similarity=0.197  Sum_probs=115.9

Q ss_pred             hHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864          162 PIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (417)
Q Consensus       162 ~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (417)
                      +.|+. +-+..+++.+...+.+|..++.+...+...     ++..+..+. ...+......+...+..+....+ ..+  
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f--   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF--   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence            44444 445588999999999999999776212222     244455555 44555554555556666655432 111  


Q ss_pred             hhchHHHHHHh-----h---cC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHH
Q 014864          241 VSPALPALAHL-----I---HS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV  309 (417)
Q Consensus       241 ~~~~l~~L~~l-----l---~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L  309 (417)
                        +.+..++..     .   ..  ...+.......++..+|...++..     ..+++.+..++ .+.++.++..++.+|
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              223322222     0   11  123444555667888887766522     23577788888 788888999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEF  384 (417)
Q Consensus       310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~  384 (417)
                      ..++...--...     .....+.+-+..+..+.+.+..|..+..+..+  +.+.... ....++..+.++..+.+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhcccccc
Confidence            999933221111     22344455555554677777666666655543  2222222 344677778877776654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.63  E-value=0.12  Score=34.92  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 014864          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (417)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (417)
                      .+.|++++|++++.+. -...+.+.++++.++++..+.+...+|-.|.++|+-++.. .+-.+.+-+.|
T Consensus         4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            5689999999987544 4444556799999999998776789999999999999764 44444444443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.63  E-value=2.3  Score=40.99  Aligned_cols=255  Identities=15%  Similarity=0.127  Sum_probs=138.6

Q ss_pred             hhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCH---HHHHHHHHHHHHHhCCCchhHHHH
Q 014864           80 AGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP---QLQFEAAWALTNIASGTSEHTKVV  155 (417)
Q Consensus        80 ~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~i  155 (417)
                      .++.. ...+.+..++..+..++........  ...    ..+...+.....+   ..+.+|+.+|+   .+..+.  ..
T Consensus        35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~  103 (464)
T PF11864_consen   35 DLIDPNQPSEARRAALELLIACIKRQDSSSG--LMR----AEFFRDISDPSNDDDFDLRLEALIALT---DNGRDI--DF  103 (464)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHccccccH--HHH----HHHHHHHhcCCCchhHHHHHHHHHHHH---cCCcCc--hh
Confidence            34444 3456788888888888765422111  111    1122233332223   45555555554   443333  22


Q ss_pred             HhCCChhHHHHhhCC---------------------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHH
Q 014864          156 IDHGAVPIFVKLLYS---------------------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA  208 (417)
Q Consensus       156 ~~~g~i~~L~~ll~~---------------------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~  208 (417)
                      .+.++.+.|...+..                           .+.......+..+.|+...+...-+.-.-.+.+..++.
T Consensus       104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~  183 (464)
T PF11864_consen  104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICT  183 (464)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            455677777766631                           12233445555666666443322222222335566666


Q ss_pred             HhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864          209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (417)
Q Consensus       209 ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  288 (417)
                      +..+..++.....++.++-.+.... ..+......++..|.......  +....+-.++.||+.......       .+.
T Consensus       184 iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~-------~i~  253 (464)
T PF11864_consen  184 ICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS-------AIR  253 (464)
T ss_pred             HHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH-------HHH
Confidence            6555556666677777777666653 222334445555555553333  555666778888876553321       356


Q ss_pred             HHHhhcCCC------ChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          289 RLAEFLMHP------SPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       289 ~L~~~l~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      .|..+|.++      +..+..-|+..++.+..+.......-+..   -+++.+...++.+ ++.+-.+....+.++.
T Consensus       254 ~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  254 TLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            677777322      34566789999999887773222211211   2677788888877 6767767777776666

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.61  E-value=0.37  Score=48.85  Aligned_cols=187  Identities=14%  Similarity=0.059  Sum_probs=130.3

Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhh
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  241 (417)
                      +.+..-+.+++..-+..|+..+.-+..... .....-..|.+..++.....+.+..+...++.+|..++..-........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            334444455777778888888888776554 1112223344556666666777889999999999999987655555566


Q ss_pred             hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChH-HH
Q 014864          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QT  320 (417)
Q Consensus       242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~  320 (417)
                      ...+|.++..+......++..+..++-..+.....       ....+.+...+.+.++.++..+...+.......+. ..
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            78889999888877777766665555444432111       12567888999999999999988888887765552 11


Q ss_pred             HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       321 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ..-.-.+++|.++....+. +..||..|..+++-+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            1122346788899999888 99999999999888865

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=2  Score=40.26  Aligned_cols=256  Identities=14%  Similarity=0.107  Sum_probs=130.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC-
Q 014864           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG-  159 (417)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-  159 (417)
                      ...+++...+..|++.|.+.+++- +...... ..-.+..++.-|-++.+.+++.++..+|..+... ....  -+..+ 
T Consensus       266 ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~--~l~~~~  340 (533)
T KOG2032|consen  266 KATDPSAKSRGMACRGLGNTASGA-PDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASND--DLESYL  340 (533)
T ss_pred             hccCchhHHHHHHHHHHHHHhccC-cHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhc--chhhhc
Confidence            344567788999999999998873 2222111 2223555665555555589999999999988763 1111  11112 


Q ss_pred             --ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHh--cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          160 --AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       160 --~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                        +.-.+..+..+.+++++..+..+++.++.- +..+++.+.+  .+...+++-.+ +++++.+.. ||......|.  |
T Consensus       341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~d~~p~va~-ACr~~~~~c~--p  416 (533)
T KOG2032|consen  341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-QDPNPYVAR-ACRSELRTCY--P  416 (533)
T ss_pred             hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-CCCChHHHH-HHHHHHHhcC--c
Confidence              334455677888999999999988888721 1123444332  12233344444 455554443 3333333332  2


Q ss_pred             CCChhhhhchHHHHHHhhcCCCh-HHH-HHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          235 QPPFDQVSPALPALAHLIHSNDD-EVL-TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~-~v~-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      +-......+.++-   .+ ..+. ..+ -+.-|++ .+....++.......     ...-++++.-+.++..+...-++.
T Consensus       417 ~l~rke~~~~~q~---~l-d~~~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~  486 (533)
T KOG2032|consen  417 NLVRKELYHLFQE---SL-DTDMARFQAFYNQWCI-QLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRS  486 (533)
T ss_pred             hhHHHHHHHHHhh---hh-HHhHHHHHHHHHHHHH-HHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHH
Confidence            2111222222221   11 1111 000 1112221 122222222222111     122233444456777777766666


Q ss_pred             hcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          313 VTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       313 ~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      .-........... ..+...+-.+.+++ .++++..|..++..+.
T Consensus       487 vd~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  487 VDSLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence            6444333332222 22334455555666 8999999988887664

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.58  E-value=0.45  Score=46.37  Aligned_cols=189  Identities=11%  Similarity=0.060  Sum_probs=127.9

Q ss_pred             HhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (417)
Q Consensus       198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  277 (417)
                      .+.++++.+++++ ...|..++-..+.-+-.+...  -........++|.+...+.+.++.+++.++.++..|+..-..+
T Consensus       327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            4566899999999 788888887766655555543  2233455788999999999999999999999888876432222


Q ss_pred             HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                         .+....+..+..+-.+.+..+|....-|||.++.......   .+.-..-.+..-+.++ -..-|..+.+++.....
T Consensus       404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdp-f~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDP-FVPARKAGVLALAATQE  476 (690)
T ss_pred             ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCC-CCCchhhhhHHHhhccc
Confidence               2223345555555556678899999999999987644332   2222333455567777 66778888888876665


Q ss_pred             CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ..+.   .=+...++|.++-+.-+++..+|-.|-.++..+..
T Consensus       477 ~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  477 YFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccch---hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence            3221   11334678888777777888888777777765544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.42  E-value=0.69  Score=45.09  Aligned_cols=145  Identities=21%  Similarity=0.196  Sum_probs=107.2

Q ss_pred             hCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCC
Q 014864          115 SGVVPRFVEFLLR----EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGD  189 (417)
Q Consensus       115 ~g~i~~Lv~lL~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~  189 (417)
                      +.+-|...+..++    ++ +.++..|.-+|..+-.-+.+...     .-+|.|+..+. +++|.++.+|+-.|+.++..
T Consensus       891 s~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc  964 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC  964 (1128)
T ss_pred             hhhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee
Confidence            3445666666665    44 89999999999887765444433     46888999887 79999999999999988744


Q ss_pred             CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864          190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY  269 (417)
Q Consensus       190 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  269 (417)
                      -....+.     .-..|.+.+ .+.+..+++.+..++.+|.....    ..+.|-++.+..+|.++|..+..-|-..+..
T Consensus       965 fN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098         965 FNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred             hhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence            3222222     345677777 78889999999999999987532    3346888999999999998887777677777


Q ss_pred             hccCCh
Q 014864          270 LSDGTN  275 (417)
Q Consensus       270 l~~~~~  275 (417)
                      ++..+.
T Consensus      1035 ~a~KdN 1040 (1128)
T COG5098        1035 IAKKDN 1040 (1128)
T ss_pred             HHhccc
Confidence            765544

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.41  E-value=0.51  Score=44.44  Aligned_cols=234  Identities=16%  Similarity=0.104  Sum_probs=133.3

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      -+..|+..+.|+|+..|......+.++...  -......+...+...|.+++.......--.+.+.+++.+..|-..-..
T Consensus       134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk  211 (409)
T PF01603_consen  134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK  211 (409)
T ss_dssp             HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence            467888888999999999888888887654  344455566667788888887665456677888889988886421111


Q ss_pred             HHHhCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          154 VVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      .....-....|+.+.+.+. .....+-..++..++..++.....     ++..+++.- ...+..-....+.-+..+...
T Consensus       212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~  285 (409)
T PF01603_consen  212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEV  285 (409)
T ss_dssp             HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence            1111011223333444432 223455556666666555544333     344455555 444544444455555555554


Q ss_pred             CCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcC-----CCChhhHH
Q 014864          233 KPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLM-----HPSPSVLI  303 (417)
Q Consensus       233 ~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~-----~~~~~v~~  303 (417)
                      -+...+ .....+...+..++.+++..|.+.|+....+     +.... ++..   .++|.+...|.     |-+..++.
T Consensus       286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~  359 (409)
T PF01603_consen  286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSRVILPIIFPALYRNSKNHWNQTVRN  359 (409)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            322222 2235667778888899999998888754432     21121 2222   24555555553     33678999


Q ss_pred             HHHHHHHHhhcCChHHHH
Q 014864          304 PALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~~~  321 (417)
                      .|..++..+..-++...+
T Consensus       360 ~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  360 LAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHH
Confidence            999999888877665433

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.38  E-value=0.079  Score=51.20  Aligned_cols=143  Identities=15%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             chHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCCh
Q 014864          243 PALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       243 ~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      .+-|.+.....+    +|+.++..|.-+|..+..-+.+...     .-+|.++..+. +++|.+|.+|+-.+|.++....
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            345555565554    5889999988888887655443221     25788999987 8899999999999999875544


Q ss_pred             HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      ...+.     .-..|..-|.+. +..||+.+..++.++.-...-     --.|-.+.+..+|.++|.++...|-..+..+
T Consensus       967 ~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         967 TTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            33332     234677778888 999999999999998753221     1247788899999999999999998888888


Q ss_pred             hCCC
Q 014864          398 TSGG  401 (417)
Q Consensus       398 ~~~~  401 (417)
                      +...
T Consensus      1036 a~Kd 1039 (1128)
T COG5098        1036 AKKD 1039 (1128)
T ss_pred             Hhcc
Confidence            7764

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.30  E-value=2.4  Score=40.03  Aligned_cols=236  Identities=13%  Similarity=0.066  Sum_probs=141.0

Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .++...+..|+.++.++|+.-|+....+|.++-+.-...|..+... +...+.+.+.......-...++..++.+..+-.
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            4444677889999999999999999999999887666666665443 566777777666677778888888998888754


Q ss_pred             CCChhh-hhchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          235 QPPFDQ-VSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       235 ~~~~~~-~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .+.... ..-....++.+...+. .........++......++.....     ++..++..=-..+..-...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence            333332 2334455666666553 333444445555444444332222     233344444445555556666777777


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CCHHHHHHHhcc----C-CH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA---NIIGPLVALLEN----A-EF  384 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~i~~L~~~l~~----~-~~  384 (417)
                      ...-+...-.-+...+...+...+++. +..|-+.|+....|=      .+-.++..   .++|.++..+..    . +.
T Consensus       283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~------~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE------YFLSLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH------HHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH------HHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            765443322233345677788888888 888888887654332      12222222   256666666543    2 56


Q ss_pred             HHHHHHHHHHHHhhCCCCHH
Q 014864          385 DIKKEAAWAISNATSGGTHE  404 (417)
Q Consensus       385 ~v~~~a~~~L~nl~~~~~~~  404 (417)
                      .++..|..++.-+..- +++
T Consensus       356 ~Vr~~a~~vl~~l~~~-d~~  374 (409)
T PF01603_consen  356 TVRNLAQNVLKILMEM-DPK  374 (409)
T ss_dssp             THHHHHHHHHHHHHTT-SHH
T ss_pred             HHHHHHHHHHHHHHHh-CHH
Confidence            8999999998888775 444

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.30  E-value=0.97  Score=44.18  Aligned_cols=256  Identities=13%  Similarity=0.132  Sum_probs=158.8

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV  155 (417)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i  155 (417)
                      .+++.+.-.+.+.+..-..-|.+.+    +..-+.++..-++|.|+..+.-++ ..++..- +.-++..... .+     
T Consensus       258 ~fLeel~lks~~eK~~Ff~~L~~~l----~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltp-l~k~~k~ld~-~e-----  326 (690)
T KOG1243|consen  258 LFLEELRLKSVEEKQKFFSGLIDRL----DNFPEEIIASKVLPILLAALEFGDAASDFLTP-LFKLGKDLDE-EE-----  326 (690)
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhccccchhhhhH-HHHhhhhccc-cc-----
Confidence            3444445555555555555555433    222334556667777777766554 1222222 2222332222 22     


Q ss_pred             HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (417)
Q Consensus       156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~  235 (417)
                      ...+++|.|++++..+|..+|-..+.-+-+....   ..+.+++..+++.+..-+ .++++.+++..+.++.-|+..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence            4557899999999999999987766666555543   334556666888888888 888999999999988888764321


Q ss_pred             CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCC-hHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-FPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      .  ......+..+.++-.+++..++.+..-|++.++.......    ..++ ...+..-+.++-..-|..++..+.....
T Consensus       403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            1  2224456666666555577888888888887765532211    2222 2334444666666677777777766554


Q ss_pred             CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ..+..   -+...++|.+..+.-+. +..+|..|..++..+-.
T Consensus       477 ~~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  477 YFDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccchh---hhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            44322   34557888888888888 88888888777766544

>PRK14707 hypothetical protein; Provisional

Probab=95.23  E-value=5.9  Score=44.18  Aligned_cols=285  Identities=17%  Similarity=0.114  Sum_probs=145.7

Q ss_pred             CHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      .+..+++.+..  ++...+.. +..|...+..+ +...+.+-..|+...|-.+-+-++++..+..+...-..++. .+..
T Consensus       164 ~~~lllNafSKw~~~~~c~~a-a~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQAV-APRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHHHH-HHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            34566665553  45555554 44444444443 34444455555555555555666645555544444444444 3444


Q ss_pred             HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh-hh
Q 014864          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NF  229 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~-~l  229 (417)
                      +..+-. ..+-..+..|.. ++.....+++.++..=..+.+..++.+-..+ +...++-|.+-++..+-..++..+. .|
T Consensus       241 ~~~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        241 RNELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HHhCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            443333 444445555544 5555555555555443334454555544333 3444555556677666665555554 44


Q ss_pred             hcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHH
Q 014864          230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALR  307 (417)
Q Consensus       230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~  307 (417)
                      .. ++....... .++-..|..+-+-+|..+...++.+|..=...+++..+.+-..| +...++-++ =++..+...|..
T Consensus       319 ~~-d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~  396 (2710)
T PRK14707        319 AD-DPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAAS  396 (2710)
T ss_pred             hc-cHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHH
Confidence            44 333222222 23333344444556777777777666654444544444333333 344444444 345555556666


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (417)
Q Consensus       308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (417)
                      .|..=..++.+..+. ++...+...++-|..=.+..+...++..|.--...+.+-.+.+
T Consensus       397 ~LA~~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~  454 (2710)
T PRK14707        397 ALAEHVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKAL  454 (2710)
T ss_pred             HHHHHhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhc
Confidence            666655566666553 4444555555555432266667777766666656556554443

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.19  E-value=2.7  Score=39.13  Aligned_cols=224  Identities=13%  Similarity=0.085  Sum_probs=122.1

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHhc---CCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 014864          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (417)
Q Consensus       172 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~---g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  247 (417)
                      +..+..+|+.+|+.+..+..-. ..+-..   -++...+..+. .+.+..+....+|+|+.=-..............+..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6789999999999987654322 111111   12344455552 334667888888888753333221122222333333


Q ss_pred             HHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHcC-ChHHHHhhcCCCChhhHHHHHHHHHHhh--cCChHH-HH-
Q 014864          248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFLMHPSPSVLIPALRTVGNIV--TGDDMQ-TQ-  321 (417)
Q Consensus       248 L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~v~~~a~~~L~~l~--~~~~~~-~~-  321 (417)
                      +..+-+ -+...+..+.+.++.++....+..  +....+ .++.++..+-+....++..|...+..+.  .+.... .. 
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            333332 345678888899999988766543  222222 6788888887777777777655554443  222211 11 


Q ss_pred             --HHHHc----C-----ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864          322 --CVIEY----Q-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKE  389 (417)
Q Consensus       322 --~~~~~----~-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~  389 (417)
                        ..++.    +     +.+.|..++.+. +...-.--.|...-..-+++. .....+ ...+...-.+++++++.+|..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~  293 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ  293 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence              11121    2     233466677664 333333334444333333221 111111 134555555778899999999


Q ss_pred             HHHHHHHhhCC
Q 014864          390 AAWAISNATSG  400 (417)
Q Consensus       390 a~~~L~nl~~~  400 (417)
                      |..+-..++..
T Consensus       294 A~~aW~~liy~  304 (372)
T PF12231_consen  294 AFKAWRRLIYA  304 (372)
T ss_pred             HHHHHHHHHHH
Confidence            99988887764

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.05  E-value=3.1  Score=39.01  Aligned_cols=191  Identities=10%  Similarity=0.036  Sum_probs=113.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCC--cHHHHHHhCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHhCC
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSP--PIEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIASG  147 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~----~~--~~~~~a~~~L~~l~~~  147 (417)
                      ..+..+++..+.+.++.|+-...++....+-.  +.+.+.+.-+.+.+-.++.+.+    .|  -.+..++.+|..+|+.
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            44566666777788999999999988764222  2334667777888888887643    12  3445566777777775


Q ss_pred             Cchh--HHHHHhCCChhHHHHhhCC-CC------HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhH
Q 014864          148 TSEH--TKVVIDHGAVPIFVKLLYS-PS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM  218 (417)
Q Consensus       148 ~~~~--~~~i~~~g~i~~L~~ll~~-~~------~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  218 (417)
                       ++.  ...++  +.||.|..++.. .+      -.+.+.+-.+|..+++..+ ....++..|+++.+.+...-..-..-
T Consensus        94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCchh
Confidence             432  23344  478999998864 22      2378889999999998866 45667889999999987732221111


Q ss_pred             HHHHHHHHhhhhcC-C-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864          219 LRNATWTLSNFCRG-K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (417)
Q Consensus       219 ~~~a~~~l~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  270 (417)
                      ..-++.++.-+... . -..........+..+..-+...+.......|..|..+
T Consensus       170 ~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  170 MALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            12222222211111 1 0111111222344444444445666677777777743

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.02  E-value=1.4  Score=40.85  Aligned_cols=197  Identities=17%  Similarity=0.225  Sum_probs=118.8

Q ss_pred             HHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh
Q 014864          178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD  257 (417)
Q Consensus       178 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~  257 (417)
                      .|+.+|-.+....+..-..+.+.+++..+++.+...-+.....   .-...-....+.......   +.  ...+...-.
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~i~~~r~   74 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE---NKNEEAGSGIPPEYKESS---VD--GYSISYQRQ   74 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---ccccCCCCCCCCCccccc---cc--ccccCHHHH
Confidence            4566666666666556677788999999999983211111000   000000111111000000   00  000000011


Q ss_pred             HHHHHHHHHHHHhcc---CChHHHHHHHH-cCChHHHHhhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 014864          258 EVLTDACWALSYLSD---GTNDKIQAVIE-AGVFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (417)
Q Consensus       258 ~v~~~a~~~l~~l~~---~~~~~~~~~~~-~~~~~~L~~~l~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  330 (417)
                      .+....+..+..+..   +.....+.+++ ..+...|..++.+..   +.+-..|+..+..+....+.....+.+.|+.+
T Consensus        75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            223344444444444   33444555666 556777778887764   68889999999999999998888888999999


Q ss_pred             HHHHhhc-CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864          331 CLLNLLS-GN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE  383 (417)
Q Consensus       331 ~L~~ll~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~  383 (417)
                      .+++.+. ..  .+.++-...-.+++.||-+ ..-.+.+.+.+.++.+++++.+++
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            9999988 33  1445555566677777764 567788888899999999887653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=95.01  E-value=1.2  Score=44.88  Aligned_cols=197  Identities=17%  Similarity=0.112  Sum_probs=110.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      .+..+.+++.+..  ---.+|++.|..+......-..     ..+..+..++.+    .++.++..|+-+++.+......
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            4566677777654  1123344445554443212222     234555566654    5677888888888888632111


Q ss_pred             ---------HHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC---Ch
Q 014864          193 ---------CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD  257 (417)
Q Consensus       193 ---------~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---~~  257 (417)
                               ..........++.+...+.   ...+..-+..++.+|+|+...          ..++.+...+...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence                     1111223335666766664   345667888899999999752          5678888888766   67


Q ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 014864          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (417)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  335 (417)
                      .++..|++++..++...++.+        .+.+++++.+.  +.++|..|+..|-.   ..+...       .+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~~-------~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSPS-------VLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---HH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCHH-------HHHHHHHH
Confidence            899999999998877666543        35677776654  46788888766644   222221       24556777


Q ss_pred             hcCCCchhHHHHH
Q 014864          336 LSGNYKKSIKKEA  348 (417)
Q Consensus       336 l~~~~~~~v~~~a  348 (417)
                      +..+.+..|....
T Consensus       601 l~~E~~~QV~sfv  613 (618)
T PF01347_consen  601 LWNEPSNQVASFV  613 (618)
T ss_dssp             HTT-S-HHHHHHH
T ss_pred             HhhCchHHHHHHH
Confidence            7665455555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.98  E-value=2.1  Score=36.86  Aligned_cols=202  Identities=21%  Similarity=0.173  Sum_probs=119.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~  197 (417)
                      ++.|+.-+....++..+...+.+|..++.+......     -++..|..+...+.......+...+..+...++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555444444489999999999999996411111     234556666676777777777788888776554221   


Q ss_pred             HhcCCHHHHHHHh---------cCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-cCCChHHHHHHHHHH
Q 014864          198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL  267 (417)
Q Consensus       198 ~~~g~i~~L~~ll---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l  267 (417)
                         +.+..++...         ..+...+.......++..+|...|.    .....++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               3344444441         1122345556667889999988766    4456778888888 777888999999999


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhhcCC
Q 014864          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGN  339 (417)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~  339 (417)
                      ..++...-  +. +.  .....+.+-++.+ .+.+....+..++.+..+.-+. ........++..+-++..+.
T Consensus       147 ~~Lc~~~v--vd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEV--VD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhh--cc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            99984322  11 11  1234444444433 3555554444444443332211 11234445666666666655

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.96  E-value=0.85  Score=37.32  Aligned_cols=113  Identities=19%  Similarity=0.163  Sum_probs=80.1

Q ss_pred             hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC-------------------CHHHHHHHhcCCCchhHHHH
Q 014864          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-------------------GLVPLLAQLNGQPKLSMLRN  221 (417)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g-------------------~i~~L~~ll~~~~~~~~~~~  221 (417)
                      .+.+.-++.++++++|..|+.++..+-.+...+-...-+..                   .-..|+..+..+.+..+...
T Consensus        42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q  121 (182)
T PF13251_consen   42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ  121 (182)
T ss_pred             cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            34445566789999999999999998866543322221111                   23345566656678889999


Q ss_pred             HHHHHhhhhcCCCCC--ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864          222 ATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (417)
Q Consensus       222 a~~~l~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  273 (417)
                      ++.++..|....|..  +......++..+..++.+.|++++..++.+++-+...
T Consensus       122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            999999999876543  3344566777777888889999999998888877643

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.89  E-value=0.2  Score=48.69  Aligned_cols=129  Identities=18%  Similarity=0.164  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (417)
Q Consensus       217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~  296 (417)
                      .+.+.++.++..+-..++.  ...+.+.+..+++...+++..|+..+|..|..+.....+ +...+-.++...+..-+.+
T Consensus        61 RIl~fla~fv~sl~q~d~e--~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLDKE--EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHhhhccCch--hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhc
Confidence            3444455555555443322  235678888888888999999999999999998863322 2222333467778888888


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                      ..+.||..|+.+|+.+-..+.+.     +..++..+..+++..++++||+.|...+.
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            89999999999999987322211     12456677888887768899998765544

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.83  E-value=0.85  Score=42.34  Aligned_cols=133  Identities=15%  Similarity=0.187  Sum_probs=97.7

Q ss_pred             HHHHHH-hCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-C---CCHHHHHHHHH
Q 014864          109 IEEVIR-SGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-S---PSDDVREQAVW  181 (417)
Q Consensus       109 ~~~~~~-~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~---~~~~i~~~a~~  181 (417)
                      ..-+++ ..+...|...+++..  -+.+-..|+.++..+....|.....+.+.|.++.+++.+. .   ++.++....-.
T Consensus        98 lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~  177 (379)
T PF06025_consen   98 LRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPN  177 (379)
T ss_pred             cccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHH
Confidence            444556 556777777887754  3688899999999999999999999999999999999887 4   67888888888


Q ss_pred             HHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCch------hHHHHHHHHHhhhhcCCCCCChhhhh
Q 014864          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL------SMLRNATWTLSNFCRGKPQPPFDQVS  242 (417)
Q Consensus       182 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~  242 (417)
                      +|+.||-+.. ..+.+.+.+.++.+++++.+....      +........+-.|.++.|.-....+.
T Consensus       178 ~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  178 VLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999998776 557778889999999998432211      33444455555666665544433333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PRK14707 hypothetical protein; Provisional

Probab=94.77  E-value=8.8  Score=42.97  Aligned_cols=283  Identities=15%  Similarity=0.085  Sum_probs=144.3

Q ss_pred             CHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      ++..+++.+..  +++..+. |+..|...+..+ ......+-..|+-..|-.+-+-++.+.....+.++-..++. .+..
T Consensus       206 ~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l  282 (2710)
T PRK14707        206 GVATVLNALCKWPDTPDCGN-AVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGL  282 (2710)
T ss_pred             HHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHH
Confidence            45566666654  4444444 455555444443 34444455555555555555666633444444444445554 3555


Q ss_pred             HHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh-hh
Q 014864          152 TKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NF  229 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~-~l  229 (417)
                      ++.+-..+ +...+.-|+ -++..+...+...|..=..+++..++.+-.. .+...++-|.+-++..+-+.++.+|. .+
T Consensus       283 ~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl  360 (2710)
T PRK14707        283 RKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERL  360 (2710)
T ss_pred             HHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence            44444333 333334343 4777777767666666555666655543333 34555666656666555555555554 44


Q ss_pred             hcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864          230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (417)
Q Consensus       230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~  308 (417)
                      +.+. ....... .++-..|..+-+-++..+...++..|..=..++.+..+.+-..|+-..|-.+-+=++..+...+...
T Consensus       361 ~~d~-~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~  439 (2710)
T PRK14707        361 VADP-ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSA  439 (2710)
T ss_pred             ccCH-hhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHH
Confidence            4443 2222222 3333344444455777777777777766555555555545445555544444444565666666666


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHH
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQ  364 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (417)
                      |.--...+.+..+. ++..-+...++.++ =+ +..+..+|+..|..=....++..+
T Consensus       440 lA~~la~d~~l~~~-~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~  494 (2710)
T PRK14707        440 LAGRLAHDTELCKA-LDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRK  494 (2710)
T ss_pred             HHHHHhccHHHHhh-cChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHh
Confidence            66555555544432 22222333333333 33 555555555555444444444433

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.70  E-value=5.8  Score=40.56  Aligned_cols=219  Identities=18%  Similarity=0.203  Sum_probs=130.0

Q ss_pred             HHhCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC----CCC----HHHHHHHH
Q 014864          113 IRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY----SPS----DDVREQAV  180 (417)
Q Consensus       113 ~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~----~~~----~~i~~~a~  180 (417)
                      .+.|++..++.++.+-.    ........+..|...+.. +.+++.+++.|+++.|+..+.    ...    ..+.+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            35678888888887632    134555566666666664 899999999999999998774    333    67888888


Q ss_pred             HHHHHhhCCCchHHH----HHHhcC--------CHHHHHHHhcCC---CchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864          181 WALGNIAGDSPRCRD----LVLSQG--------GLVPLLAQLNGQ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (417)
Q Consensus       181 ~~L~nl~~~~~~~~~----~~~~~g--------~i~~L~~ll~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  245 (417)
                      .++-.+..+......    ......        .+..+++.+...   .++.+....+.+|-+|+.+.+......+..+-
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~  272 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK  272 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence            777777643221000    001111        266667766432   36889999999999999986433333322222


Q ss_pred             HHHHHhhc-----CCChHHHHHHHHHHHHhccC----C--hHHHHHHHHcCChHHHHhhcCCCCh---------------
Q 014864          246 PALAHLIH-----SNDDEVLTDACWALSYLSDG----T--NDKIQAVIEAGVFPRLAEFLMHPSP---------------  299 (417)
Q Consensus       246 ~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~----~--~~~~~~~~~~~~~~~L~~~l~~~~~---------------  299 (417)
                      |.+ ++=.     .++..+   .+.+++.++.+    .  ....+.+++.|++...+.+|...-|               
T Consensus       273 p~l-~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  273 PYL-DFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             Hhc-ChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            222 2111     112222   24444544432    2  2345678889999988888753322               


Q ss_pred             -hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 014864          300 -SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS  337 (417)
Q Consensus       300 -~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  337 (417)
                       .-...+++.|.-++.++.. ++..+..++++.+..+=+
T Consensus       349 ~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEq  386 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQ  386 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhc
Confidence             1234567777777777653 344566677755544433

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.67  E-value=0.94  Score=44.42  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=94.0

Q ss_pred             hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHHHHhhcCC
Q 014864          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~  316 (417)
                      ......++|.|...+++.+..+++.++..+..+++.-+.   ..++.-++|.+..+. .+.+..++..++-|++.+...-
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            345578889888888989999999999999988766552   244555888887774 3557889999999999998322


Q ss_pred             hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE  383 (417)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~  383 (417)
                      +..  .++  ..+.++....+.. ++.+......+..++....+.. ..++...++|.++.+...+.
T Consensus       461 D~~--~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  461 DKA--AVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHH--HhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            211  111  2344555556666 8888887777777776532221 34455678888888776554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.62  E-value=0.72  Score=43.69  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=113.8

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhCCCch
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      ....+.+.+.+++...+..|++.+..+ +.+ .....+++....+..|.+++.++.   ..++....+.++..+-.+.--
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            457888899999999999999998877 332 566788999999999999999876   235556666666665554221


Q ss_pred             hHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          151 HTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                       ....+...+|.....+.+  ..+..+-..|+..|-++...++..+..+.+.--+..|+..+ +..+..++..|...+..
T Consensus       162 -sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  162 -SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             -eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence             111122233333344443  24566778889999999888887888888888899999999 77788888888888887


Q ss_pred             hhcCCCCC
Q 014864          229 FCRGKPQP  236 (417)
Q Consensus       229 l~~~~~~~  236 (417)
                      +....|..
T Consensus       240 l~~~a~~~  247 (713)
T KOG2999|consen  240 LFRKAPDD  247 (713)
T ss_pred             HHhhCChH
Confidence            77765443

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.58  E-value=3.9  Score=38.05  Aligned_cols=309  Identities=14%  Similarity=0.133  Sum_probs=158.9

Q ss_pred             cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      .+.+...+..|-..|.+.+....+.+....+... ++.++++++.          +.+..+-.+|+++|+.+..+ ++..
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k-~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~   80 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK-MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV   80 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence            3455666777766676666554322222222111 4555554431          11367889999999999875 5444


Q ss_pred             HHHHhCC---ChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---C-CCchhHHHHHH
Q 014864          153 KVVIDHG---AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT  223 (417)
Q Consensus       153 ~~i~~~g---~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~-~~~~~~~~~a~  223 (417)
                      ..+-+..   .+...+..+.+  .+..+....+|+|..=-..     ..++....+..++..+.   + -++..+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            4433322   34455555543  4556777777777653211     12333334444444442   2 34667888888


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc--CChHHH----HHHHHc----C-----ChH
Q 014864          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTNDKI----QAVIEA----G-----VFP  288 (417)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~----~~~~~~----~-----~~~  288 (417)
                      .++.+|....|..-......-+|.++..+-+....++..|..++..+..  +++...    ....+.    +     +.+
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  235 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE  235 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence            8888888876554444445567777777766777777665554444321  211111    111111    1     333


Q ss_pred             HHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHHHHH
Q 014864          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQA  365 (417)
Q Consensus       289 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~  365 (417)
                      .|..++.+.+......-+|..--+.-+......--.-...+...-..++++ ++.+|..|..+=..+..   .++.....
T Consensus       236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k  314 (372)
T PF12231_consen  236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK  314 (372)
T ss_pred             HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence            456666664433333333333222223221111111123455555567777 88898887755444432   22222222


Q ss_pred             HHHCCCHHHHHHHhccC-CH----HHHHHHHHHHHHhhCC
Q 014864          366 VIEANIIGPLVALLENA-EF----DIKKEAAWAISNATSG  400 (417)
Q Consensus       366 l~~~~~i~~L~~~l~~~-~~----~v~~~a~~~L~nl~~~  400 (417)
                      .+.- +..++...++.. ..    +++..+...++|+...
T Consensus       315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            2221 223334444432 33    6788888888887654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.55  E-value=0.19  Score=41.50  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCchHHHHHH---------------hcCCHHHHHHHhcC-----CCchhHHHHHHHHHhh
Q 014864          169 YSPSDDVREQAVWALGNIAGDSPRCRDLVL---------------SQGGLVPLLAQLNG-----QPKLSMLRNATWTLSN  228 (417)
Q Consensus       169 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~L~~ll~~-----~~~~~~~~~a~~~l~~  228 (417)
                      .++.......++.+|+|++.....++..+-               +...+..|+..+.+     .....-....+.++.|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            345556778888999999887765553322               22246777777755     2345667889999999


Q ss_pred             hhcCCCCCChhhh--hc--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864          229 FCRGKPQPPFDQV--SP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (417)
Q Consensus       229 l~~~~~~~~~~~~--~~--~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  277 (417)
                      +++.+....+...  ..  .+..|+.++.+.+..-+.-++.+|.|+|-..+..
T Consensus        85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H  137 (192)
T PF04063_consen   85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH  137 (192)
T ss_pred             hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence            9988644333322  22  3677888888886666777899999999766543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=94.51  E-value=2.4  Score=42.19  Aligned_cols=135  Identities=18%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             chHHHHHHhhcCC----ChHHHHHHHHHHHHhcc----CChHHHHHHHHcCChHHHHhhcC----CCChhhHHHHHHHHH
Q 014864          243 PALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVG  310 (417)
Q Consensus       243 ~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~~~~L~~~l~----~~~~~v~~~a~~~L~  310 (417)
                      ..+..+..++.++    .+.+...++-+++.+..    ..+.....++ ..+++.+...|.    ..+...+..++++||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            3455666666543    45566666666666542    2211001111 124455555443    445566788999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhc-C-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLS-G-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDI  386 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~-~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v  386 (417)
                      |+.....           ++.+..++. + ..+..+|..|+|+|.+++...+..        +-+.|+.++.+  .++++
T Consensus       472 N~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            9874332           333444443 1 125689999999999998755553        33455566543  47899


Q ss_pred             HHHHHHHHHHh
Q 014864          387 KKEAAWAISNA  397 (417)
Q Consensus       387 ~~~a~~~L~nl  397 (417)
                      |..|+.+|...
T Consensus       533 RiaA~~~lm~t  543 (574)
T smart00638      533 RMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHhc
Confidence            99999888655

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.49  E-value=1.4  Score=41.88  Aligned_cols=165  Identities=12%  Similarity=0.075  Sum_probs=112.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCCh----hhHHHHHHHHHHhhcCChHHH
Q 014864          245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVTGDDMQT  320 (417)
Q Consensus       245 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~l~~~~~~~~  320 (417)
                      ...+...+.+++..-+..++..+..++... .....++....+..|..++.++..    .+....++++..+....-...
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            445667777777777777888888887544 456778888889999999987753    455556666655543222111


Q ss_pred             HHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       321 ~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      . .+...++.....+.+-. .+..+-..|...|-++..+++...+.+.+.--+..|+..+...+..++..|...+..+..
T Consensus       164 ~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 E-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             e-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            1 11112222333333221 155677888888989988888777777787889999999999999999999999988988


Q ss_pred             CCCHHHHHHHHh
Q 014864          400 GGTHEQIKYEHT  411 (417)
Q Consensus       400 ~~~~~~~~~l~~  411 (417)
                      .+..+....+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            887666555543

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=2.3  Score=41.41  Aligned_cols=295  Identities=14%  Similarity=0.156  Sum_probs=157.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ++..+=+.+.+++...+.-|+-.+.-.-++-.++.      .-++-.|...+.+++ ..++..|+.-|+-.-.++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            56666667777776666655544332222211111      012455667777777 678888877777655543  222


Q ss_pred             HHHhCCChhHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          154 VVIDHGAVPIFVKLLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~--~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      .+.     ..|..++.+.+  .++...|..+|+.+..++..  ..+ ..-++..++..-.........+...-.|.-+..
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            222     14556666543  45777777888887754431  111 111333333332112233444444445554444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC---hhhHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT  308 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~---~~v~~~a~~~  308 (417)
                      +...        .+...+.-+..-+..+...+-..+..++.....+.-.+-+    ..+..+-...+   ..-+..|+-.
T Consensus       559 gkqe--------~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQE--------SVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             cccc--------hHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            4321        1112222222222222222222222221111111100000    22222222221   2233467777


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHH
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  388 (417)
                      ++-++.+.+-..++.     +..+-.++..+ .+.+|+..-.+++-++..+|..       +++..|-++.++.|.++..
T Consensus       627 iAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            777777777554433     55677778888 9999999999999999887752       5788888899999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHH
Q 014864          389 EAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       389 ~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      +|+.+++-+-.+.+.-.+..++
T Consensus       694 naIfamGLiGAGTnNARla~mL  715 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNNARLAQML  715 (878)
T ss_pred             HHHHHhccccCCcchHHHHHHH
Confidence            9999999887765544444443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.40  E-value=0.2  Score=35.87  Aligned_cols=84  Identities=12%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             hHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (417)
Q Consensus       287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (417)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..+...++++ ++.|--+|..+|+.++...++     
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~-----   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD-----   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence            4556777888889999999999999998776  11122346788889999999 999999999999999986665     


Q ss_pred             HHCCCHHHHHHHhcc
Q 014864          367 IEANIIGPLVALLEN  381 (417)
Q Consensus       367 ~~~~~i~~L~~~l~~  381 (417)
                         .+++.|++...+
T Consensus        77 ---~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 ---EVLPILLDEYAD   88 (92)
T ss_pred             ---HHHHHHHHHHhC
Confidence               245555555443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=0.81  Score=40.16  Aligned_cols=147  Identities=17%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ..+.+.+..|.++|+.....++..++.+...+ .+....+... ++..+++-+++.. ..+-..|+.++..+.+.-....
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~-vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~i  164 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHE-VIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNSI  164 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHH-HHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999986654 3333333322 4666777778887 7899999999998887422222


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ....+ +.+..|+.--..++.-+++.|-.+|..+.......       -+++.|...+ ++.++.++..++.++.+...
T Consensus       165 ~~~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  165 DQELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPIL-QHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HHHHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHH-hhhchhhhhhhhccccccce
Confidence            22111 22222222222356778999999998887654422       1455666666 77788888888877666554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.30  E-value=0.28  Score=40.61  Aligned_cols=82  Identities=11%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             CchhHHHHHhCCChhHHHHhhCC---------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhH
Q 014864          148 TSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM  218 (417)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~ll~~---------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  218 (417)
                      +..+.+.+++.|++..|+.+|..         .+..+...++.+|..|.....+....+...+++..++..+ .+++..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence            35677888888999999988843         4567888999999999877776555555677888888888 7888999


Q ss_pred             HHHHHHHHhhhh
Q 014864          219 LRNATWTLSNFC  230 (417)
Q Consensus       219 ~~~a~~~l~~l~  230 (417)
                      +..++..|..+|
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.19  E-value=3.3  Score=36.34  Aligned_cols=219  Identities=15%  Similarity=0.131  Sum_probs=122.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLV  197 (417)
Q Consensus       120 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~  197 (417)
                      .|=..|.+++ +.+|..|+.+|..+...-+...   ....-+..|+.++.+  .|......++.++..+.....-.... 
T Consensus         3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence            3445677877 8999999999998887544321   222234555554433  45555555577777776332211111 


Q ss_pred             HhcCCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh
Q 014864          198 LSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       198 ~~~g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~  275 (417)
                       ....+..+.+... +......+..+...+..+...........-...+..+++.+..+ ||.-.-.+...+..+...-+
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence             1112223332221 11234566777777777776542222222345677777777654 77766666666655543322


Q ss_pred             HHHHHHHHcCChHHHHhhcC--------C-C-Ch-h-hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh
Q 014864          276 DKIQAVIEAGVFPRLAEFLM--------H-P-SP-S-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~--------~-~-~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  343 (417)
                      -       ....+.+.+.+.        . + ++ . .+..--..|.+....++...     .-.+|.|++-|.++ .+.
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~  223 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPS  223 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcH
Confidence            1       122333333332        1 1 22 1 23344445555555555333     34689999999999 899


Q ss_pred             HHHHHHHHHHHHhc
Q 014864          344 IKKEACWTVSNITA  357 (417)
Q Consensus       344 v~~~a~~~L~nl~~  357 (417)
                      +|..+..+|..++.
T Consensus       224 ~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  224 VKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999886

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.03  E-value=0.69  Score=38.28  Aligned_cols=124  Identities=13%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             CCChHHHHHHHHHHHHhccCChHHHHHHHH----------------cCChHHHHhhcCC------CChhhHHHHHHHHHH
Q 014864          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVFPRLAEFLMH------PSPSVLIPALRTVGN  311 (417)
Q Consensus       254 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~~l~~------~~~~v~~~a~~~L~~  311 (417)
                      .++......+|..|+|++..+..... +++                ...+..|+..+..      +...-......+++|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            34445566778888888876554322 222                1246667777655      223445677888889


Q ss_pred             hhcCChHHHHHHHHc--CC--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHhcc
Q 014864          312 IVTGDDMQTQCVIEY--QA--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN  381 (417)
Q Consensus       312 l~~~~~~~~~~~~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l~~  381 (417)
                      ++.... .++.+++.  +.  +..|+.++.+. +..-|.-++.+|.|+|.....+ ..+..   .+++|.|+--|..
T Consensus        85 lS~~~~-gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   85 LSQLPE-GRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             hcCCHH-HHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence            886554 44545543  33  77888888888 7777888999999999875555 34443   4778877776653

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.00  E-value=1.6  Score=41.78  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      ...+.+.+..+++.+.+.|..|+..+|..|+.++..-.+ +...+-.|.+..|..-+-+..+.+|..|+.+|..+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            455688888999999999999999999999988765433 3344555678888888888889999999999988863332


Q ss_pred             HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (417)
Q Consensus       318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  351 (417)
                      ....     .....+..+++..++.+||+.|..-
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            1111     1234566777766578888877543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.99  E-value=0.54  Score=46.01  Aligned_cols=133  Identities=17%  Similarity=0.127  Sum_probs=95.9

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~  238 (417)
                      .++|.|..-+++.+..+++.++..+..++..-+   -..+..-+++.+-.+...+++..++.+++-|+..+..   ..+.
T Consensus       389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD~  462 (700)
T KOG2137|consen  389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLDK  462 (700)
T ss_pred             HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHHH
Confidence            567777778888899999999999999885433   1234444678888887788899999999999999983   2233


Q ss_pred             hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC
Q 014864          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS  298 (417)
Q Consensus       239 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~  298 (417)
                      ..+...++.+.+.....|+.+....+.+...+.....+. ..+....++|.++.+...+.
T Consensus       463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            334455666667777889998887777777766444332 34555668898888877665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.95  E-value=1.5  Score=44.13  Aligned_cols=309  Identities=16%  Similarity=0.117  Sum_probs=157.6

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH------HHhC
Q 014864           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV------VIDH  158 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~------i~~~  158 (417)
                      +|.-+...+++.++.++..  ......+++.|++..|+..=.-   ...-.-...||..+.+... ..+.      ++-.
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~~q~-~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGSLQG-IMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhhhhh-HHHHHhhccHHHHH
Confidence            4555666777778777654  5666778888888877665322   2334445566776665321 1111      1122


Q ss_pred             CChhHHHHhhCCCC------HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC-------CC-----------
Q 014864          159 GAVPIFVKLLYSPS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------QP-----------  214 (417)
Q Consensus       159 g~i~~L~~ll~~~~------~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~-----------  214 (417)
                      .++..-+.+|....      ..+.-.+++.+..+       -+.+-.+..+..|+.++..       +.           
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frai-------l~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~s  511 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAFVFRAI-------LDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISS  511 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhh
Confidence            34444555665322      22233333333222       2333345566666666621       11           


Q ss_pred             chhHHHHHHHHHhhhhcCCC-----C-CChhhhhchHHHHHHhhcCCC------hHHHHHHHHHHHHhccCC-------h
Q 014864          215 KLSMLRNATWTLSNFCRGKP-----Q-PPFDQVSPALPALAHLIHSND------DEVLTDACWALSYLSDGT-------N  275 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~-----~-~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~l~~l~~~~-------~  275 (417)
                      +.......|.+|....+..-     . .+.....+..+..++-+...+      .+..+..+|-+-.+....       -
T Consensus       512 s~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w  591 (1516)
T KOG1832|consen  512 SKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQW  591 (1516)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcc
Confidence            12334455666655444321     1 011111222333333222111      223344444444332221       1


Q ss_pred             HHHHHHHHcCChHHHHhhcCCC-C-------hhhHHHHHHHHHHhhcCChHHHHHHHH-------cCChHHHHHhhcCC-
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHP-S-------PSVLIPALRTVGNIVTGDDMQTQCVIE-------YQALPCLLNLLSGN-  339 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~-~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~~l~~L~~ll~~~-  339 (417)
                      ...+.+.+.+.+..++.+..-+ +       .+....|+.+|..+..-.+-+.+..-.       ..++..++..-.-. 
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~  671 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSN  671 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence            2344566667777777776532 2       244556666666665555544432211       11222222222111 


Q ss_pred             --CchhHHHHHHHHHHHHhcCCHHH-------------------------------HHHH----HHCCCHHHHHHHhccC
Q 014864          340 --YKKSIKKEACWTVSNITAGNREQ-------------------------------IQAV----IEANIIGPLVALLENA  382 (417)
Q Consensus       340 --~~~~v~~~a~~~L~nl~~~~~~~-------------------------------~~~l----~~~~~i~~L~~~l~~~  382 (417)
                        .++++++.|..++.|+....|+.                               ...+    ...+.|..|+.+|+..
T Consensus       672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k  751 (1516)
T KOG1832|consen  672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYK  751 (1516)
T ss_pred             cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Confidence              17899999999999987543211                               1122    2367899999999865


Q ss_pred             C-----HHHHHHHHHHHHHhhCCCCHHHH
Q 014864          383 E-----FDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       383 ~-----~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      .     ..+|.-||.+|..|+......|+
T Consensus       752 ~P~t~aD~IRalAc~~L~GLaR~~tVrQI  780 (1516)
T KOG1832|consen  752 NPPTTADCIRALACRVLLGLARDDTVRQI  780 (1516)
T ss_pred             CCCCcHHHHHHHHHHHHhccccCcHHHHH
Confidence            4     36899999999999987554443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.87  E-value=0.53  Score=38.04  Aligned_cols=113  Identities=18%  Similarity=0.147  Sum_probs=80.7

Q ss_pred             ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHH
Q 014864          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQ  362 (417)
Q Consensus       286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~  362 (417)
                      ...++..+|+++++.-+-.++..+.-.+..++...-.---...+..++.+|+.+..+.+++.++.++..+..   +.++-
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l  105 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL  105 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence            567789999999988899999999888877642221111235678899999887677889999999999975   55554


Q ss_pred             HHHHHH---CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          363 IQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       363 ~~~l~~---~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .+.+..   .++++.++.++++  ......++.+|..+...
T Consensus       106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            444443   2345566666554  56778888888887764

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.69  E-value=2.5  Score=35.03  Aligned_cols=146  Identities=15%  Similarity=0.134  Sum_probs=92.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      -++.+++...+++..++..|+..+.-++...=-.|..      .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            4678888888999999999999999887654222222      4999999999988 99999999999999886554443


Q ss_pred             HHHhCCChhHHHHhh---CCC-CHHH---HHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-------chhHH
Q 014864          154 VVIDHGAVPIFVKLL---YSP-SDDV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-------KLSML  219 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll---~~~-~~~i---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~  219 (417)
                      .-...| +..-..+-   ..+ ....   ....+..+..+...+...|..+     +..+++.+..+.       .+.-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            333323 32222222   111 1111   4445555666666555566654     556666663322       33445


Q ss_pred             HHHHHHHhhhhcC
Q 014864          220 RNATWTLSNFCRG  232 (417)
Q Consensus       220 ~~a~~~l~~l~~~  232 (417)
                      ....++..||+.-
T Consensus       156 ~~~~Fla~nLA~l  168 (187)
T PF12830_consen  156 DFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHhcC
Confidence            5566666666654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.65  E-value=8.4  Score=38.38  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--------CCHHHHHHHHHHHHHhhC---CCchHHHHHHhcCCHH
Q 014864          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG---DSPRCRDLVLSQGGLV  204 (417)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--------~~~~i~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~  204 (417)
                      .|+.++.-+.+..++.+   . .|+++.+...|..        .++.-.+.|++.++++..   .....+ -+++.=+++
T Consensus       389 aal~fl~~~~sKrke~T---f-qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a-n~me~fiv~  463 (970)
T COG5656         389 AALFFLIISKSKRKEET---F-QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA-NVMEYFIVN  463 (970)
T ss_pred             HHHHHHHHHhcccchhh---h-hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH-HHHHHHHHH
Confidence            34555555444323221   1 3888999998842        235556778888888764   222232 233333455


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc
Q 014864          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (417)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (417)
                      .++..+ +++..-++..+|..++.+..+  -++......+......++.+++-.|+..|+-++.-+..+.  .....+.+
T Consensus       464 hv~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sa  538 (970)
T COG5656         464 HVIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSA  538 (970)
T ss_pred             HhhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHh
Confidence            555555 677777889999999999554  3333444566677777787788888888888888877554  33444555


Q ss_pred             CChHHHHhhcC
Q 014864          285 GVFPRLAEFLM  295 (417)
Q Consensus       285 ~~~~~L~~~l~  295 (417)
                      .+.+.+-++|.
T Consensus       539 hVp~tmekLLs  549 (970)
T COG5656         539 HVPETMEKLLS  549 (970)
T ss_pred             hhhHHHHHHHH
Confidence            44444444443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.54  E-value=0.52  Score=47.36  Aligned_cols=170  Identities=19%  Similarity=0.192  Sum_probs=91.3

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC----CChHHHHHHHHHHHHhcc---CCh
Q 014864          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSD---GTN  275 (417)
Q Consensus       203 i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~---~~~  275 (417)
                      +..+.+++.. ....-. .+.+.+..+......+..    ..+..+..++.+    .++.+...++-+++.+..   ...
T Consensus       397 v~~i~~~I~~-~~~~~~-ea~~~l~~l~~~~~~Pt~----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~  470 (618)
T PF01347_consen  397 VKFIKDLIKS-KKLTDD-EAAQLLASLPFHVRRPTE----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS  470 (618)
T ss_dssp             HHHHHHHHHT-T-S-HH-HHHHHHHHHHHT-----H----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHc-CCCCHH-HHHHHHHHHHhhcCCCCH----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence            4455666633 222222 233444444444323333    334445555543    345677777777776642   110


Q ss_pred             ------HHHHHHHHcCChHHHHhhcC----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC--Cchh
Q 014864          276 ------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKS  343 (417)
Q Consensus       276 ------~~~~~~~~~~~~~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~  343 (417)
                            ......+...+++.+...+.    ..+...+..++++|||+..  +         ..++.+..++...  ....
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~  539 (618)
T PF01347_consen  471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHF  539 (618)
T ss_dssp             ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HH
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchH
Confidence                  00011122235666666655    4566788899999999963  2         2355666666544  2678


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHh
Q 014864          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNA  397 (417)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl  397 (417)
                      +|..|+|+|..++...++.+        .+.|+.++.+  .++++|..|..+|...
T Consensus       540 ~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  540 IRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC  587 (618)
T ss_dssp             HHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence            99999999999987767543        4456666654  4688999998888664

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.43  E-value=0.79  Score=37.50  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=75.5

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC-----C--------------hHHHHhhcCCC-ChhhHHHHH
Q 014864          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-----V--------------FPRLAEFLMHP-SPSVLIPAL  306 (417)
Q Consensus       247 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-----~--------------~~~L~~~l~~~-~~~v~~~a~  306 (417)
                      .+.-++.++++.++..++.++..|.++........-+.+     +              =..|+..|..+ +..+....+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l  123 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL  123 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344556778999999999999999887654433222211     1              12344445544 677888999


Q ss_pred             HHHHHhhcCChHHHHH-HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          307 RTVGNIVTGDDMQTQC-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       307 ~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      ++++.++...+...-. -+-..++..+..++.+. |..++..+..+++-+.+.
T Consensus       124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence            9999999988854321 11223455566677787 999999999999988763

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.42  E-value=4.3  Score=40.00  Aligned_cols=148  Identities=16%  Similarity=0.170  Sum_probs=95.3

Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhh-CCCch----HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CC
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIA-GDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQ  235 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~-~~~~~----~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~  235 (417)
                      |.|.+-|+.+|..++..|+..+.++- ..+|.    -.+.+++. -...+..+| .++-+.++..|..-++...... ..
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence            45556667789999999999999986 22222    23444433 355677788 7787888877776666555432 22


Q ss_pred             CChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          236 PPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      .+...+...+..+..-+. +...+|+......|-++..++..  ..+++. ++|.+-..|.++...+|.++...|..|-.
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            222333334444443333 33568888889999988876543  234444 45677777778889999999988877743

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.40  E-value=0.7  Score=45.17  Aligned_cols=108  Identities=19%  Similarity=0.164  Sum_probs=81.2

Q ss_pred             HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH
Q 014864          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (417)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  193 (417)
                      -.|++..++....+.+ ..+|+.++.+|..+.....+.-+.+. .+....+..-+.+..+.++.+|+.+|+.+-++... 
T Consensus        83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-  159 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-  159 (892)
T ss_pred             HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence            3556778888888888 89999999999999875444434344 36777777777788899999999999999744321 


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                          -+..++..+..++..++++++++.++..+.+
T Consensus       160 ----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  160 ----EECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             ----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence                1234677888899888999999998765543

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.32  E-value=14  Score=39.92  Aligned_cols=113  Identities=15%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 014864          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (417)
Q Consensus       285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (417)
                      +++|.|..-|.+.+..+|..|...+|.+......+.. --........+.-+.+. +..||.+++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            6889999999999999999999999999876654322 00112334445555566 778888888777777654443211


Q ss_pred             HH------------------------------HHCC----CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          365 AV------------------------------IEAN----IIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       365 ~l------------------------------~~~~----~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ..                              +...    ++..+-+.+.+....||+.|...|.-+-.
T Consensus       337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            10                              0111    23333344456778999999988877654

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.16  E-value=8.5  Score=38.30  Aligned_cols=159  Identities=18%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             ChhHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhh
Q 014864          160 AVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSN  228 (417)
Q Consensus       160 ~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~  228 (417)
                      .+..+..++.+    +++.++..|+-+++++..    +.+.+... +....++.+...+.   +..+..-+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            45566666664    456788888888888763    22211111 11225556665553   23455556777888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhc-C--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHH
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLI  303 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~-~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~  303 (417)
                      +...          ..++.+...+. .  .+..++..|+|+|..++...+...        -+.+++++.+.  ++++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            7764          33455555554 2  246799999999998876555433        35566666554  577888


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  347 (417)
                      .|+..|-..   .+..       ..+..+...+..+.+..|+..
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sf  568 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASF  568 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence            887766332   1222       124556666665545555443

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=93.02  E-value=2.8  Score=42.24  Aligned_cols=158  Identities=18%  Similarity=0.198  Sum_probs=109.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ..+..++..|.|.|......+-..+...+..++.+ +       ++..|+.+.-+...    ..|+.+|..+-.  |..+
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K   69 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-W-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK   69 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-H-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence            35789999999999999888888888887654222 2       26667765433331    455666665422  3222


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                            ..+..|-.++..  +.-+-.++..|+.+....+..--.+.+...+..|+++|..+.+..+...|+.+|..|.-.
T Consensus        70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence                  233445555554  456778999999999887777788899999999999998888999999999999888765


Q ss_pred             CCCCChhhhhchHHHHHHhh
Q 014864          233 KPQPPFDQVSPALPALAHLI  252 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll  252 (417)
                      -|.........++.++..++
T Consensus       142 ip~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  142 IPSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             ccchhhHHHHHHHHHHHHHH
Confidence            55444334444444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.94  E-value=5.2  Score=37.07  Aligned_cols=232  Identities=18%  Similarity=0.174  Sum_probs=121.6

Q ss_pred             hhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh-hhcCCCCCCh
Q 014864          161 VPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPPF  238 (417)
Q Consensus       161 i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~-l~~~~~~~~~  238 (417)
                      +..++.-+. +....++..++--|+.-+.+. .++..+...|....+++.+.+.++......++.++.. ++.+.+....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            555555555 345678888888888877755 5899999999999999999555554355444444444 4444333333


Q ss_pred             hhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC---------CCChhhHHHHHHH
Q 014864          239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---------HPSPSVLIPALRT  308 (417)
Q Consensus       239 ~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~---------~~~~~v~~~a~~~  308 (417)
                      ......+..+..++..+ ..++.....      .... ....... ......+...+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            23355566667777611 000000000      0000 0000000 011111222221         2233456667777


Q ss_pred             HHHhhc-----CC---------hHHHHHHHHcCChHHHHHhhcC----CC-----------chhHHHHHHHHHHHHhcCC
Q 014864          309 VGNIVT-----GD---------DMQTQCVIEYQALPCLLNLLSG----NY-----------KKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       309 L~~l~~-----~~---------~~~~~~~~~~~~l~~L~~ll~~----~~-----------~~~v~~~a~~~L~nl~~~~  359 (417)
                      +-.++.     ++         +...+.+...|++..++.++..    ..           +...-..+.++|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            766641     11         1223445566889998888752    10           1123345777888887655


Q ss_pred             HHHHHHHHH--CCCHHHHHHH----hccCCHHHHHHHHHHHHHhhCCC
Q 014864          360 REQIQAVIE--ANIIGPLVAL----LENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       360 ~~~~~~l~~--~~~i~~L~~~----l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .++..+++.  .+.++.+...    ......++...++..+.|++-..
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n  301 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN  301 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence            555455543  2333333322    22333455678888999988763

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.88  E-value=8.5  Score=36.25  Aligned_cols=191  Identities=13%  Similarity=0.124  Sum_probs=117.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhCCC---chhHHHHHhCCChhHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 014864          121 FVEFLLREDYPQLQFEAAWALTNIASGT---SEHTKVVIDHGAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDS  190 (417)
Q Consensus       121 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~~-------~~~~i~~~a~~~L~nl~~~~  190 (417)
                      +..+++..+ ++-++.|+...+.++.+.   ...++.+.+.-+.+.+-+++.+       ++.-.+..++..|..+|++.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            555666666 688899999999998864   3456668888778888888864       33455777888888888765


Q ss_pred             chH-HHHHHhcCCHHHHHHHhcCCCchh------HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh----HH
Q 014864          191 PRC-RDLVLSQGGLVPLLAQLNGQPKLS------MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD----EV  259 (417)
Q Consensus       191 ~~~-~~~~~~~g~i~~L~~ll~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~----~v  259 (417)
                      +-. ...++.  .||.|+..+.+..|++      +...+..+|..++...+........|+++.+.++-.-++-    .+
T Consensus        95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            421 122222  5888888886555554      8889999999999987666666778999999877644332    22


Q ss_pred             HHHHHHH-HHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          260 LTDACWA-LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       260 ~~~a~~~-l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      ...+... ...+-..++. ...+..  ++..+..=+...+...+-..|+.|+.+.....
T Consensus       173 al~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~  228 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEY  228 (698)
T ss_pred             HHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCh
Confidence            1111111 1111112211 111111  13333333334455567788888886655443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.62  E-value=0.53  Score=33.69  Aligned_cols=81  Identities=9%  Similarity=0.048  Sum_probs=62.8

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 014864          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY  408 (417)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  408 (417)
                      +...+..+.++ .+.+|..+...|..+.....  ....--.+++..+...++++|+-|=-.|+.+|..++......-++.
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            34566777888 88999999999999997544  1111124677888899999999999999999999999866667777


Q ss_pred             HHhc
Q 014864          409 EHTF  412 (417)
Q Consensus       409 l~~~  412 (417)
                      |++.
T Consensus        82 L~~~   85 (92)
T PF10363_consen   82 LLDE   85 (92)
T ss_pred             HHHH
Confidence            7754

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=92.49  E-value=1.2  Score=35.86  Aligned_cols=146  Identities=10%  Similarity=0.101  Sum_probs=85.8

Q ss_pred             hchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHHHHhhcCChHH
Q 014864          242 SPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       242 ~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~  319 (417)
                      ...++.|..+++++ +..++.+++.+++.|..-++...+.+...  .+   ..- ...+.......+...+ .....++ 
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~~~~-~~~~~ee-   81 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLPMMG-ISPSSEE-   81 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHhhcc-CCCchHH-
Confidence            45678888888766 68999999999999987777654422211  01   000 1111112222221111 1111222 


Q ss_pred             HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                         ..-..++..|+.+|+++.-..-...++.++.++... ......++-  .++|.+++.+...+...++...+-|+.++
T Consensus        82 ---~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 ---YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             ---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               222345677888888774444555677777777642 122233332  48999999999777788888888888775


Q ss_pred             C
Q 014864          399 S  399 (417)
Q Consensus       399 ~  399 (417)
                      .
T Consensus       157 ~  157 (160)
T PF11865_consen  157 S  157 (160)
T ss_pred             H
Confidence            3

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.32  E-value=3.1  Score=42.09  Aligned_cols=195  Identities=21%  Similarity=0.202  Sum_probs=117.1

Q ss_pred             HHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHH--HHHHHhcCCCch
Q 014864          140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV--PLLAQLNGQPKL  216 (417)
Q Consensus       140 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~ll~~~~~~  216 (417)
                      +|.++...+++....+++.|++..+...++. .+.+++..++..++|++...+ .+........+.  .+-.++....+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6778888889999999999999999999985 678899999999999986543 222222111222  333344344455


Q ss_pred             hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-
Q 014864          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-  295 (417)
Q Consensus       217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-  295 (417)
                      +.-..++..++.+....+....   .+.           -+.+......++.+.....   .......-+.+.+..++. 
T Consensus       573 ersY~~~siLa~ll~~~~~~~~---~~~-----------r~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTE---CVF-----------RNSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL  635 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCcc---ccc-----------hHHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence            6777777777777765432110   000           1112222222222222111   111122212222444444 


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      +..+..+..|++++.+++...++....+.+.++++.+.+.-.......++..+...+
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            345678899999999999998888888888899888877765542334444444333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.16  E-value=2.5  Score=39.11  Aligned_cols=131  Identities=17%  Similarity=0.121  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hh--CCCCHHHHHHHHHHHHHhhCCCchH------------HH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LL--YSPSDDVREQAVWALGNIAGDSPRC------------RD  195 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll--~~~~~~i~~~a~~~L~nl~~~~~~~------------~~  195 (417)
                      ..-+..|+..+..++....+....++. +.+..++. +-  .+.+..-++.|+..++.++......            -.
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            456777888888888643332222221 22332222 11  1356788999999999998654211            12


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHH
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL  267 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  267 (417)
                      .+....+++.|.  -..+..+-++..|++.+..+-..   .+......++|.++.+|.+++.-|..+|+.++
T Consensus       304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~---l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ---LPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG---S-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            233333444443  12345677888899998888765   33567788999999999999999999988765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.14  E-value=14  Score=37.12  Aligned_cols=320  Identities=13%  Similarity=0.124  Sum_probs=178.4

Q ss_pred             HHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           75 LPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        75 l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      ...++++++.. |..++..+++.++-++..- +-.-+.+.  -.+....+..++.....-+.+...+..|+-+.....+.
T Consensus       528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~  606 (978)
T KOG1993|consen  528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH  606 (978)
T ss_pred             HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            45667777774 7888999999998776542 11112111  13334455556654433466777777777776543333


Q ss_pred             HHHHHhCCChhHHHHhhC---CCCHHHHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHhcCCC---chhHHHH
Q 014864          152 TKVVIDHGAVPIFVKLLY---SPSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRN  221 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~---~~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~  221 (417)
                      .....  +.+-.++..|-   ...+-++.+.+.+|.|+..    .++.+..      ++-+.+.+-.+.+   +..+.+.
T Consensus       607 I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~ED  678 (978)
T KOG1993|consen  607 IAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLED  678 (978)
T ss_pred             hhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhh
Confidence            32111  11222222221   2556678888888888862    2222222      2334444442222   3345556


Q ss_pred             HHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHHHcCChHHHHhhcCCCChh
Q 014864          222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS  300 (417)
Q Consensus       222 a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  300 (417)
                      +...........+... ...-..+|.+...+....+.++. ++..+. |..-.+.. .-.....|+++.+..++.+-..+
T Consensus       679 gmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~e  755 (978)
T KOG1993|consen  679 GMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNE  755 (978)
T ss_pred             HHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence            5555555554433222 23356778888877655433322 222222 22222222 22234457888888888876666


Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHH---
Q 014864          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPL---  375 (417)
Q Consensus       301 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L---  375 (417)
                      -....+.++-.+...++ ........++++.++.-+-. ...|.+...-..+++.+.-.+++..-.++. .+-...+   
T Consensus       756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~  834 (978)
T KOG1993|consen  756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAM  834 (978)
T ss_pred             HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHH
Confidence            67777777777776555 33445566788876665532 226778888888888888777776555542 2222222   


Q ss_pred             -----HHHhcc-CCHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864          376 -----VALLEN-AEFDIKKEAAWAISNATSGGTHEQIK  407 (417)
Q Consensus       376 -----~~~l~~-~~~~v~~~a~~~L~nl~~~~~~~~~~  407 (417)
                           +.+..+ .+++-|+--+-++..+...+.+.-..
T Consensus       835 li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila  872 (978)
T KOG1993|consen  835 LIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILA  872 (978)
T ss_pred             HHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHH
Confidence                 233332 47888999999999998876554433

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.04  E-value=12  Score=42.19  Aligned_cols=263  Identities=13%  Similarity=0.053  Sum_probs=140.9

Q ss_pred             CChHHHHHHHHHHHHhhhCC--CCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864           85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (417)
                      .+..+...|+..|++++...  ..+....-.+..++.+|..++.+....+++..++.|+.++.....   ..+. . +-+
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIk-S-GWk 1223 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVK-S-GWK 1223 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhh-c-CcH
Confidence            35677888888888875432  112122223456788888878766668999999999999876422   2222 2 444


Q ss_pred             HHHHhhC----CCCHHHHHHHHHHHHHhhCCCchH-----HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh----
Q 014864          163 IFVKLLY----SPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF----  229 (417)
Q Consensus       163 ~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l----  229 (417)
                      .++.++.    +.++.+...|..++..|+.+.-..     .+.+.  ..+..+..+..+..+.++--.++..|+++    
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence            4555544    467889999999888876542110     01111  13444444443333444444444444433    


Q ss_pred             hcCC-----C------------------C------CChhhhhchHHH---HHHhhcCCChHHHHHHHHHHHHhccCCh--
Q 014864          230 CRGK-----P------------------Q------PPFDQVSPALPA---LAHLIHSNDDEVLTDACWALSYLSDGTN--  275 (417)
Q Consensus       230 ~~~~-----~------------------~------~~~~~~~~~l~~---L~~ll~~~~~~v~~~a~~~l~~l~~~~~--  275 (417)
                      +...     .                  .      ........-+|.   |..+..+++.+|+..|+.+|..+.....  
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence            1110     0                  0      000001223344   4444566789999999998887754322  


Q ss_pred             ---HHHHHHHHcCChHHHHhhcCCC------------------C------h--hhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864          276 ---DKIQAVIEAGVFPRLAEFLMHP------------------S------P--SVLIPALRTVGNIVTGDDMQTQCVIEY  326 (417)
Q Consensus       276 ---~~~~~~~~~~~~~~L~~~l~~~------------------~------~--~v~~~a~~~L~~l~~~~~~~~~~~~~~  326 (417)
                         +.=..++. +++-.++..+++.                  +      |  +....|++.+..+....-+.... +-.
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~ 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LLK 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence               11122222 3444444444310                  0      1  22333444444444322222222 122


Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      +++..|...+..+ +..+-+.++.+|.++..
T Consensus      1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            5556666666777 88888888888888875

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.03  E-value=3.5  Score=40.56  Aligned_cols=180  Identities=14%  Similarity=0.137  Sum_probs=109.8

Q ss_pred             CCCchhHHHHHHHHHhhhhcCC-CCCChh----hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 014864          212 GQPKLSMLRNATWTLSNFCRGK-PQPPFD----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (417)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (417)
                      +-.+..++.+|+..+.++.--. |....+    .+..-...+..+|.++-+.|+..+...++.....--+.+..-+-..+
T Consensus       184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~l  263 (1005)
T KOG1949|consen  184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDL  263 (1005)
T ss_pred             ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            6678899999999999887543 333222    23455667888999999999999888777765322221111111123


Q ss_pred             hHHHHhhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864          287 FPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (417)
Q Consensus       287 ~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (417)
                      +..+.+-+.. ...++|......|..++.......  +++ .++|.+-..|.++ ...||..+...|..|-....-+...
T Consensus       264 l~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik~vra~~f~~  339 (1005)
T KOG1949|consen  264 LKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIKAVRAAKFWK  339 (1005)
T ss_pred             HHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHHhhhhhhhhc
Confidence            3344444433 346899999999988887665332  222 4567788888888 8999999999988885532222222


Q ss_pred             HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                      ++   -...++..|..++..+.+..+..|.|..
T Consensus       340 I~---~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  340 IC---PMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             cc---cHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            21   1334444455555555444444444443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.01  E-value=25  Score=39.69  Aligned_cols=276  Identities=13%  Similarity=0.132  Sum_probs=147.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCchhHH---HHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC
Q 014864          127 REDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (417)
Q Consensus       127 ~~~~~~~~~~a~~~L~~l~~~~~~~~~---~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~  202 (417)
                      +.+ ..+...|+..|..++..--+..+   .-.+...+..|..++. +.+.++++..+.++.++......    -+.. +
T Consensus      1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-G 1221 (1780)
T PLN03076       1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-G 1221 (1780)
T ss_pred             Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-C
Confidence            344 67888888888887763221111   1122245666666665 46789999999999998743221    1233 4


Q ss_pred             HHHHHHHhc---CCCchhHHHHHHHHHhhhhcCC-C---CCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHh----
Q 014864          203 LVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-P---QPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYL----  270 (417)
Q Consensus       203 i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~-~---~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l----  270 (417)
                      -..++.++.   .+.++.+...+..++..++.+. +   .........++.++..+.... +.++--.++..|.++    
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence            444444442   4556778888888887776653 2   111244456666666666443 344544555444433    


Q ss_pred             ccCCh-----------------------HHHH-----HHHHcCChHHHH---hhcCCCChhhHHHHHHHHHHhhcCC---
Q 014864          271 SDGTN-----------------------DKIQ-----AVIEAGVFPRLA---EFLMHPSPSVLIPALRTVGNIVTGD---  316 (417)
Q Consensus       271 ~~~~~-----------------------~~~~-----~~~~~~~~~~L~---~~l~~~~~~v~~~a~~~L~~l~~~~---  316 (417)
                      +.+..                       +...     .......++.|.   .+..+..++||..|+.+|-.+....   
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence            11100                       0000     000112344433   3355677899999999987776322   


Q ss_pred             --hHHHHHHHHcCChHHHHHhhcCCC----------------------chhHHHHHHHHHHHHhc---CCHHHHHHHHHC
Q 014864          317 --DMQTQCVIEYQALPCLLNLLSGNY----------------------KKSIKKEACWTVSNITA---GNREQIQAVIEA  369 (417)
Q Consensus       317 --~~~~~~~~~~~~l~~L~~ll~~~~----------------------~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~  369 (417)
                        ++....++. +++-+++..+++..                      +..+...+..+|.+++.   ..-+.+..+.+ 
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence              223333333 44555555553210                      00122333334444433   22233333333 


Q ss_pred             CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC----CHHHHHHHH
Q 014864          370 NIIGPLVALLENAEFDIKKEAAWAISNATSGG----THEQIKYEH  410 (417)
Q Consensus       370 ~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~l~  410 (417)
                      +++..|..++...+..+....+.+|.+++...    +.++...++
T Consensus      1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~ 1504 (1780)
T PLN03076       1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVV 1504 (1780)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            56666666667788888899999999888764    344444443

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=91.99  E-value=8.9  Score=36.46  Aligned_cols=229  Identities=10%  Similarity=0.097  Sum_probs=106.0

Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhCC----CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCC
Q 014864          164 FVKLLYS-PSDDVREQAVWALGNIAGD----SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPP  237 (417)
Q Consensus       164 L~~ll~~-~~~~i~~~a~~~L~nl~~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~  237 (417)
                      +....++ .++..-+....+++.+...    ++... .-++...++.+..+| +..-.+..-++...++.|.+..+ ...
T Consensus        76 l~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~  153 (435)
T PF03378_consen   76 LKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPL  153 (435)
T ss_dssp             HHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S-
T ss_pred             HHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            3333344 4566666666666666532    22111 123444677777777 55555677777777777776654 222


Q ss_pred             hhhhhchHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH----hhcCCCChhhHHHHHHHHHHh
Q 014864          238 FDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA----EFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       238 ~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~----~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .......+|.|+.- +-.....+ -...+.|.........   .+...+-+..++    +++.+...  -..+...|..+
T Consensus       154 p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~---~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~i  227 (435)
T PF03378_consen  154 PDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPS---FIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESI  227 (435)
T ss_dssp             -TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGG---G----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCch---hhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHH
Confidence            33445555554432 21111112 1222233222211111   112222333333    34444432  24566777777


Q ss_pred             hcCChHH-HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH---CCCHHHHHHHh-----cc-
Q 014864          313 VTGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIE---ANIIGPLVALL-----EN-  381 (417)
Q Consensus       313 ~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~~l-----~~-  381 (417)
                      ...-+.. .+..+ ..++..++.-|++...+...+.-+..++.++. .+++..-..++   .|++..++.-+     .. 
T Consensus       228 v~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~  306 (435)
T PF03378_consen  228 VENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKV  306 (435)
T ss_dssp             HHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG-
T ss_pred             HHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhc
Confidence            6555432 12111 13444555556655466777777777776664 34554444443   56666666532     11 


Q ss_pred             CCHHHHHHHHHHHHHhhCCC
Q 014864          382 AEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       382 ~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ..+.=|+-++-.++++...+
T Consensus       307 ~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  307 SGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             -SHHHHHHHHHHHHHHHHSS
T ss_pred             CCcchhhHHHHHHHHHHhcc
Confidence            23444777778888876543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.63  E-value=3.2  Score=36.64  Aligned_cols=146  Identities=19%  Similarity=0.172  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHhCC--ChhHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CH
Q 014864          132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GL  203 (417)
Q Consensus       132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i  203 (417)
                      +.++-++..++-++.+ +.....+...+  ....+..++.    +..+..+-.++++++|+..... .+..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            4466777777666664 43333343322  2334444332    2567888899999999988766 455555432  34


Q ss_pred             HHHHHHhcCCC---chhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhh-cC-CChHHHHHHHHHHHHhccCChH
Q 014864          204 VPLLAQLNGQP---KLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HS-NDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       204 ~~L~~ll~~~~---~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll-~~-~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                      ...+..+..+.   +..++..++..+.|++...  ...........+..+...+ .. .|+++...++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            44444442333   7888999999999998643  1112222234566666633 33 5899999999999999976655


Q ss_pred             HHH
Q 014864          277 KIQ  279 (417)
Q Consensus       277 ~~~  279 (417)
                      ..+
T Consensus       236 ~~~  238 (268)
T PF08324_consen  236 AKQ  238 (268)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=91.49  E-value=11  Score=34.66  Aligned_cols=157  Identities=12%  Similarity=0.084  Sum_probs=88.3

Q ss_pred             HHHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc---CC------CCHHHHHHHHHHHHHH
Q 014864           75 LPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RE------DYPQLQFEAAWALTNI  144 (417)
Q Consensus        75 l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~---~~------~~~~~~~~a~~~L~~l  144 (417)
                      ...+.+.|..+- +..+...+..++-+ +.+ ....+-+.....++.|..+-.   ..      .+..+..++..||+|+
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrIL-SRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl  124 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRIL-SRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL  124 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHH-hcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence            345566666554 45566667777644 443 111111111112333433322   11      1257899999999999


Q ss_pred             hCCCchhHHHHHhCCChhHHHHhhCCC-----CHHHHHHHHHHHHHhhCCCchHHH-HHHhcCCHHHHHHHhcCC-----
Q 014864          145 ASGTSEHTKVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQ-----  213 (417)
Q Consensus       145 ~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~-----  213 (417)
                      ..+++..++...+......+++.+...     ...+...-+..|.-+..-.+..|. .+.+.++++.+.+.+.+.     
T Consensus       125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids  204 (532)
T KOG4464|consen  125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS  204 (532)
T ss_pred             HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence            999999999999888887777766331     112223333334333333333444 456778888888888421     


Q ss_pred             ---------CchhHHHHHHHHHhhhhcCC
Q 014864          214 ---------PKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       214 ---------~~~~~~~~a~~~l~~l~~~~  233 (417)
                               .+......++.++.|++.++
T Consensus       205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  205 EINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence                     11234455666777777665

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.35  E-value=4.4  Score=41.87  Aligned_cols=290  Identities=18%  Similarity=0.135  Sum_probs=159.6

Q ss_pred             hccCHHHHHh-hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC--
Q 014864           71 KLENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--  147 (417)
Q Consensus        71 ~~~~l~~l~~-~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~--  147 (417)
                      +++++..+-. +|++++.+.+...+..+.++.+.+ .++-...-+.--+|.|+.-+..-. ..+|...+.+|-.-...  
T Consensus       464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn  541 (2799)
T KOG1788|consen  464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN  541 (2799)
T ss_pred             chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence            3444444443 456788889999999888887654 444444445566888887777655 56666665554332220  


Q ss_pred             -CchhHHHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC---chhHHHHH
Q 014864          148 -TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNA  222 (417)
Q Consensus       148 -~~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~a  222 (417)
                       -|++        -+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|...+.++.   .++- .  
T Consensus       542 cvPeq--------ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-y--  610 (2799)
T KOG1788|consen  542 CVPEQ--------ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-Y--  610 (2799)
T ss_pred             cCcHH--------HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-h--
Confidence             0111        122356667654 3445555666666777777778999999999999888774421   0100 0  


Q ss_pred             HHHHhhhhcCCCCC-Chhhh---hchHHHHHHhhcCC---ChH--H---HHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864          223 TWTLSNFCRGKPQP-PFDQV---SPALPALAHLIHSN---DDE--V---LTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (417)
Q Consensus       223 ~~~l~~l~~~~~~~-~~~~~---~~~l~~L~~ll~~~---~~~--v---~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  290 (417)
                       ...+.....+|.. .+...   ...+-.--.+..+.   ++-  +   ..-.-.+|..+..++.++...+.+..++..+
T Consensus       611 -sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvkli  689 (2799)
T KOG1788|consen  611 -SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLI  689 (2799)
T ss_pred             -hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEE
Confidence             0111111111111 11000   00000001111111   110  0   1111335666667777777778888888888


Q ss_pred             HhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-----------chhHHHHHHHHHHHHhcCC
Q 014864          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----------KKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       291 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~~~  359 (417)
                      ++++-  +...|...++++..+....+.+..    +.-+-.++..|+++-           ..........++..+...+
T Consensus       690 lpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvn  763 (2799)
T KOG1788|consen  690 LPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVN  763 (2799)
T ss_pred             EEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccC
Confidence            88884  345688889999998877775432    122344555665521           2234445556666666544


Q ss_pred             HHHHHHHHHCCCHHHHHHHhc
Q 014864          360 REQIQAVIEANIIGPLVALLE  380 (417)
Q Consensus       360 ~~~~~~l~~~~~i~~L~~~l~  380 (417)
                      ......+-+++.+..|...|.
T Consensus       764 gsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  764 GSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             chheeehhccccHHHHHHHHH
Confidence            444445557788888777663

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=91.19  E-value=9.3  Score=33.08  Aligned_cols=134  Identities=16%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchHHHHHHhcCCH
Q 014864          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD--------VREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (417)
Q Consensus       132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~--------i~~~a~~~L~nl~~~~~~~~~~~~~~g~i  203 (417)
                      .....|+..|+.+-.           ..+.+.++++++.++..        +.+....++..            +..|-+
T Consensus        57 ~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilas------------v~~G~~  113 (249)
T PF06685_consen   57 NLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILAS------------VGDGDI  113 (249)
T ss_pred             HHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHH------------HhCCCH
Confidence            345566666665533           36889999999765532        12222222222            234557


Q ss_pred             HHHHHHhcCCC-chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHH
Q 014864          204 VPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAV  281 (417)
Q Consensus       204 ~~L~~ll~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~  281 (417)
                      ..|..++.+.. +.-++..++.++..+....+......+.-.-..+-..+..++..+....+..++.|... -...++.+
T Consensus       114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~  193 (249)
T PF06685_consen  114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKA  193 (249)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHH
Confidence            77777774443 67788899999999999876655555444444444445544444444444344433211 11233444


Q ss_pred             HHcCChH
Q 014864          282 IEAGVFP  288 (417)
Q Consensus       282 ~~~~~~~  288 (417)
                      .+.|.++
T Consensus       194 f~~~lVd  200 (249)
T PF06685_consen  194 FEDGLVD  200 (249)
T ss_pred             HHcCCCC
Confidence            5555544

The function of this family is unknown.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=91.07  E-value=12  Score=34.18  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHHc-C-ChHHHHHhhcCCC----c--------hhH
Q 014864          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY-Q-ALPCLLNLLSGNY----K--------KSI  344 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~~----~--------~~v  344 (417)
                      .+++.. ++.+...|.+..+.+..++++.|..++. ........++.. . -.+.+..++....    .        +.+
T Consensus        52 ~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si  130 (330)
T PF11707_consen   52 SILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI  130 (330)
T ss_pred             HHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCH
Confidence            344443 7888889999988899999999999998 565666666643 2 2234555553221    1        288


Q ss_pred             HHHHHHHHHHHh-cCCHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          345 KKEACWTVSNIT-AGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       345 ~~~a~~~L~nl~-~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      |......+..+. .+++.....++ +.+.+..+++-|..+++++....+.+|..-+.
T Consensus       131 R~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl  187 (330)
T PF11707_consen  131 RTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVL  187 (330)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhc
Confidence            888886555554 57777666666 56789999999999899999999999986444

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.71  E-value=1.9  Score=35.96  Aligned_cols=143  Identities=13%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhCCCc-hhHHHHHhCCChh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTS-EHTKVVIDHGAVP  162 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~  162 (417)
                      .-...|+..+.-+++.  ++....+++..+--.+-.+|...+    .+-++..++.+++.+...++ .....+....++|
T Consensus       115 nRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP  192 (315)
T COG5209         115 NRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP  192 (315)
T ss_pred             hHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence            3344566666656553  344444666664333444554322    35688899999999998654 4556666778999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH-------hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ..++++..+++.-+..++.+++.+..++....-...       -...+..++..+-+.....+.+.++.+...||..
T Consensus       193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            999999998888888999999999887764322111       1112233333332334455566666666555554

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.67  E-value=1.6  Score=35.27  Aligned_cols=110  Identities=24%  Similarity=0.177  Sum_probs=72.1

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC---C
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---P  234 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~---~  234 (417)
                      .+..+..+|.++++.-+..++..+.-++..++.  +.+.+.+  .+..++..+.+.....+.+.++.++..+...-   |
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            456677889988888888888888888876532  3333333  36788899977778888999999999888643   3


Q ss_pred             CCChhhh----hchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864          235 QPPFDQV----SPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (417)
Q Consensus       235 ~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  273 (417)
                      .-..+..    ..+++.++.+++.  ......++.+|..+...
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            3222333    3344444555443  45556666666666543

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.44  E-value=1.1  Score=35.06  Aligned_cols=74  Identities=8%  Similarity=0.030  Sum_probs=60.2

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      +++..+.+.|+++++.++..|+..|..++.....+...++.+.+++..|+.+++...++.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            56788888999999999999999999887764455666788889999999999864447899888888877665

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=90.26  E-value=2.7  Score=47.84  Aligned_cols=199  Identities=16%  Similarity=0.170  Sum_probs=111.6

Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhc
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ....+.+..+...+.++.-.+++.+...+++++..+|.+.-..+..    ..+..+.   .+.-.-+...+..-+..+..
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~  636 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMARTKEESAKLLCELII  636 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence            3334555666667777888899999999999998777432221111    1122221   11111111111111111111


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVG  310 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~  310 (417)
                      ..+.-........+..++..+..++..+...+..+++.|+...........+ ..++.+.+.+.. .+..-+..++++++
T Consensus       637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~  715 (2341)
T KOG0891|consen  637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG  715 (2341)
T ss_pred             HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence            1111111222445566677777777788888888999888655533333344 455556555553 34566788999999


Q ss_pred             HhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          311 NIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      ++.+........... .-++..+...+.......++.++...++++...
T Consensus       716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            998765432221111 245566666666665677888888888877654

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.15  E-value=23  Score=35.81  Aligned_cols=272  Identities=12%  Similarity=0.098  Sum_probs=135.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh--CCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      ..++.++.+.++..++..++.++.-...+-.-..+.+..  ......+.+++.. ...+.+...+.+|+.+.....+...
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~  608 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA  608 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            345556665543556666666666555532111121111  1233344444443 3445556667777766543222111


Q ss_pred             HHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh---HHHHHHH--H--HH
Q 014864          196 LVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD---EVLTDAC--W--AL  267 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~---~v~~~a~--~--~l  267 (417)
                      . ....++..+-.+-..+ ..+-++...+.++.|+...-.........-.+|.+-....-+.|   -..++++  |  +|
T Consensus       609 P-~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L  687 (978)
T KOG1993|consen  609 P-YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTL  687 (978)
T ss_pred             H-HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHH
Confidence            1 0111122222222233 34556667778888888765444444444444544433322222   2334433  3  23


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (417)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  347 (417)
                      .|...-.++.    .  +.+|.+...+......+ ..++.++....--+......-...|+...+..++.+- ..+-...
T Consensus       688 ~n~~~l~p~l----l--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~a  759 (978)
T KOG1993|consen  688 MNSQKLTPEL----L--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQA  759 (978)
T ss_pred             hcccccCHHH----H--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence            3332222222    1  35677777776554333 3344444333322221111123347777888888766 5555666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc--cCCHHHHHHHHHHHHHhhCC
Q 014864          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLE--NAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~--~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .+.++.++...++ ........+++|.+...+-  .+.|-+-..-+.+++.+...
T Consensus       760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~  813 (978)
T KOG1993|consen  760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR  813 (978)
T ss_pred             HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence            6777777766555 4555566788888777653  34566666667777766655

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=89.99  E-value=21  Score=35.10  Aligned_cols=113  Identities=14%  Similarity=0.040  Sum_probs=64.7

Q ss_pred             hHHHHhhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHH
Q 014864          287 FPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNRE  361 (417)
Q Consensus       287 ~~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~  361 (417)
                      +..+...+....  +.-....||++|.++..-.+....-.--+++..|+.+..-.   +-+..-+.+-+|+..   ..|.
T Consensus       483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemK---rgKdnKAVvASnIMyvvGQYpR  559 (1053)
T COG5101         483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMK---RGKDNKAVVASNIMYVVGQYPR  559 (1053)
T ss_pred             HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHh---hcCCcchhhecceeeeeccchH
Confidence            455656665554  55567899999999854433322222223455555554322   112222223344432   2232


Q ss_pred             HHHHHH--HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          362 QIQAVI--EANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       362 ~~~~l~--~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      ....-+  -..++..|.++++..+..++..||.....++..+.
T Consensus       560 FLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~  602 (1053)
T COG5101         560 FLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCP  602 (1053)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCc
Confidence            211111  12578889999999999999999999998887754

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.92  E-value=1.3  Score=34.73  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=61.4

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      +.+..+.+.|.+.++.++..|+..+..++.........++....++..|+.+++...++.++..++..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            46788888899999999999999999888766555666788889999999999984448999999888888765

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.91  E-value=24  Score=35.76  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             hhhccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCC
Q 014864           69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERS  106 (417)
Q Consensus        69 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~  106 (417)
                      ++-+..+|.++..|.++...+.--|+.++.+++....+
T Consensus       494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence            34455689999999999999999999999999876533

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.89  E-value=4.7  Score=31.21  Aligned_cols=76  Identities=12%  Similarity=-0.009  Sum_probs=61.1

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-HHHHHHhcCCHHHHHHHhcC--CCchhHHHHHHHHHhhhhcCCC
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .++..|-+-|.++++.++..|+.+|-.+..+... +...+....++..|++++..  ..++.++..++..+.......+
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3567777888889999999999999999866544 77888887888889999955  4578899999988888776543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.88  E-value=1.9  Score=35.97  Aligned_cols=106  Identities=9%  Similarity=0.103  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHH
Q 014864          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLV  376 (417)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~  376 (417)
                      ...|+..|..+++.. +....++++.+--.+...|...    ..+.+|-.+..+++.+.. +++..+..+....++|.++
T Consensus       117 vcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            345666666666544 4444455655544455555322    256788899999999987 6777888888899999999


Q ss_pred             HHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864          377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       377 ~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      ++++.+..--+.-|+..+..+...  ..-++|++
T Consensus       196 rIme~gSElSktvaifI~qkil~d--DvGLqYiC  227 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGD--DVGLQYIC  227 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHH
Confidence            999988877777788888777663  34444443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=89.52  E-value=16  Score=33.31  Aligned_cols=155  Identities=18%  Similarity=0.103  Sum_probs=102.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCchhHHHHHhC--CChhHHHHhhCC-----CC--------HHHHHHHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDH--GAVPIFVKLLYS-----PS--------DDVREQAVW  181 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~--g~i~~L~~ll~~-----~~--------~~i~~~a~~  181 (417)
                      +..+...|++.. ..+...++..|..++. ........+...  --.+.|.+++..     ..        +.+|...+.
T Consensus        58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            777888889888 7888899999999999 665666666654  223466666632     11        278888877


Q ss_pred             HHHHhh-CCCchHHHHHHhc-CCHHHHHHHhcCCCchhHHHHHHHHHhh-hhcCCC--CCCh--hhhhchHHHHHHhhcC
Q 014864          182 ALGNIA-GDSPRCRDLVLSQ-GGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKP--QPPF--DQVSPALPALAHLIHS  254 (417)
Q Consensus       182 ~L~nl~-~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~a~~~l~~-l~~~~~--~~~~--~~~~~~l~~L~~ll~~  254 (417)
                      .+..+. ..++..+..+++. +.+..+++-+ ..++.++...++.++.. +..+..  ....  ......+..|..+...
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            666655 4455566655554 4567778887 55677888888888874 444431  1111  2225678888887776


Q ss_pred             CCh----HHHHHHHHHHHHhccCC
Q 014864          255 NDD----EVLTDACWALSYLSDGT  274 (417)
Q Consensus       255 ~~~----~v~~~a~~~l~~l~~~~  274 (417)
                      +++    .+...+-..|..+|..+
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCC
Confidence            666    66666666666666544

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.49  E-value=39  Score=37.79  Aligned_cols=271  Identities=17%  Similarity=0.117  Sum_probs=134.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      +..++..|...+ +..+..++.++..++..-+..  .++. +....+++-+.+ .++-.|..-..+++.+-.+....-..
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            334444555555 677777777777776631111  1111 233444454544 44444544455555554222111111


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                      -.....+..++.+..++.++.++..++.++..+...............+..+..++-+..+ ...+.-.++...-.+++.
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence            1122246667777766677899999999999988876433455556666666666654321 111111222222111110


Q ss_pred             -------------------HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 014864          277 -------------------KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS  337 (417)
Q Consensus       277 -------------------~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  337 (417)
                                         ....+. .-.+-...-++.++++.++..+..++-++-...+....   -.-+++.+..++.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~r-ts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLR-TSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHH-HHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence                               111111 11223333445667888899999999888765553322   1234666666666


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCH-H---HHH-------------H-HH-HCCCHHHHHHHhc-cCCHHHHHHHHHHHHHh
Q 014864          338 GNYKKSIKKEACWTVSNITAGNR-E---QIQ-------------A-VI-EANIIGPLVALLE-NAEFDIKKEAAWAISNA  397 (417)
Q Consensus       338 ~~~~~~v~~~a~~~L~nl~~~~~-~---~~~-------------~-l~-~~~~i~~L~~~l~-~~~~~v~~~a~~~L~nl  397 (417)
                      +. ..-.|.....++..+..... +   ..+             . .. +.|+=-.+..+++ ..|.+..+.....+.++
T Consensus      1109 s~-~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred             ch-hhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            65 33444444444444432110 0   000             0 01 2333334444444 33567777777787774


Q ss_pred             h
Q 014864          398 T  398 (417)
Q Consensus       398 ~  398 (417)
                      .
T Consensus      1188 ~ 1188 (2067)
T KOG1822|consen 1188 L 1188 (2067)
T ss_pred             H
Confidence            3

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=89.48  E-value=6.2  Score=30.93  Aligned_cols=75  Identities=15%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .++..|.+-|.++++.++..|+.+|-.+..+ +..+...+...+++..|.+++....++.++..++..+..-+...
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            4567777888889999999999999888866 45588888899999999999966678889988888887777653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.07  E-value=1.2  Score=37.83  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCcHHHHHHh-------CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH-HHhC
Q 014864           87 SGVQYECTTQFRKLLSIERSPPIEEVIRS-------GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-VIDH  158 (417)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-------g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-i~~~  158 (417)
                      -.-|..|+.+++|+.-.+  .+++.+...       .++..|+++|....++..++-|+-.|.+++.++...... ..+.
T Consensus       138 lSPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~  215 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK  215 (257)
T ss_pred             CCHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            356888999999996553  333333322       246677788887766889999999999999987666544 4456


Q ss_pred             CChhHHHHhhCCC
Q 014864          159 GAVPIFVKLLYSP  171 (417)
Q Consensus       159 g~i~~L~~ll~~~  171 (417)
                      ++|..|+.++.+.
T Consensus       216 ~~i~~Li~FiE~a  228 (257)
T PF12031_consen  216 PCISHLIAFIEDA  228 (257)
T ss_pred             chHHHHHHHHHHH
Confidence            8999999999753

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=88.99  E-value=12  Score=30.96  Aligned_cols=79  Identities=20%  Similarity=0.252  Sum_probs=58.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      .++.++++..+++ ..++..|+.++..+....--+     -...+|.|+.+..++++.++..|...+..+....+..-..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3667777777788 899999999988877632111     0136899999999999999999999999998766654443


Q ss_pred             HHhcC
Q 014864          197 VLSQG  201 (417)
Q Consensus       197 ~~~~g  201 (417)
                      -...|
T Consensus        83 ~~~~g   87 (187)
T PF12830_consen   83 RYSEG   87 (187)
T ss_pred             HHHHH
Confidence            33333

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=88.94  E-value=1.7  Score=33.65  Aligned_cols=74  Identities=9%  Similarity=0.001  Sum_probs=57.9

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l~~  146 (417)
                      +++..+.+.|+++++.++..|+..+-.++.....+...++...+++..|+.+++...... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            467788888899999999999999998887654555666778889999999988765333 78887777776654

Unpublished observations. Domain of unknown function.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=88.25  E-value=5.8  Score=35.30  Aligned_cols=70  Identities=17%  Similarity=0.314  Sum_probs=48.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH-HHHHhCCChhHH----HHhhC--------CCCHHHHHHHHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPIF----VKLLY--------SPSDDVREQAVWAL  183 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L----~~ll~--------~~~~~i~~~a~~~L  183 (417)
                      ++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+    ..++.        .....+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            5999999999988 9999999999999998544333 235555654433    33333        24456677777777


Q ss_pred             HHhh
Q 014864          184 GNIA  187 (417)
Q Consensus       184 ~nl~  187 (417)
                      ..++
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            7774

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=87.82  E-value=0.59  Score=27.19  Aligned_cols=38  Identities=32%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhh
Q 014864           11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR   49 (417)
Q Consensus        11 ~~~~~~k~~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r   49 (417)
                      +|...||+..+..+.-+|| +...+.-|.+|-+.++..|
T Consensus         2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred             ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence            5778899854444444444 4556777888877777665

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.62  E-value=3.4  Score=32.00  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=58.2

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~  146 (417)
                      +.+..+.+.|+++++.++..|+..+..++.....+...++....++..|+.++...  .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888899999999999999999887765344555566668888899999863  347899998888887765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=87.50  E-value=14  Score=35.97  Aligned_cols=218  Identities=10%  Similarity=0.056  Sum_probs=119.0

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc--C--------CCchhHHHHHHHHHhhhhcCCCCCChh
Q 014864          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--G--------QPKLSMLRNATWTLSNFCRGKPQPPFD  239 (417)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~  239 (417)
                      +++.+|...|-..|-.+..+-+       +...+..|..+..  .        .-++.++..++..|+   +..  ....
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~--~Aa~  315 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSV--IAAT  315 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhH--HHHh
Confidence            4677888888888888875521       2224566666664  1        124555555554444   321  0011


Q ss_pred             hhhchHHHHHHhhcCC--ChHHHHHHHHHH---HHhccCCh-HHH---HHHHHcCChHHHHh----hcCCCChhhHHHHH
Q 014864          240 QVSPALPALAHLIHSN--DDEVLTDACWAL---SYLSDGTN-DKI---QAVIEAGVFPRLAE----FLMHPSPSVLIPAL  306 (417)
Q Consensus       240 ~~~~~l~~L~~ll~~~--~~~v~~~a~~~l---~~l~~~~~-~~~---~~~~~~~~~~~L~~----~l~~~~~~v~~~a~  306 (417)
                      ....++..+...+.++  +..++..++..+   .....+.. ...   ..++..++.+.+-.    --...+...|..+.
T Consensus       316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY  395 (501)
T PF13001_consen  316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY  395 (501)
T ss_pred             CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence            1234455555566655  556666665555   33333322 222   22333344443310    01123568899999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH--HHHHCCCHHHHH-HHhccCC
Q 014864          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ--AVIEANIIGPLV-ALLENAE  383 (417)
Q Consensus       307 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~i~~L~-~~l~~~~  383 (417)
                      .+||.|+...+....  -+.+++..|+.-|..+ .++++...-.+|+.++......-.  ..........+. ....+..
T Consensus       396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~  472 (501)
T PF13001_consen  396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV  472 (501)
T ss_pred             HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence            999999998875431  2346788899999777 899999888888888752111000  000001111111 1222345


Q ss_pred             HHHHHHHHHHHHHhhCCCC
Q 014864          384 FDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       384 ~~v~~~a~~~L~nl~~~~~  402 (417)
                      ..+|..|+.-...+....+
T Consensus       473 ~~~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  473 RSCRYAAVKYANACFPFSD  491 (501)
T ss_pred             HHHHHHHHHHHHHhCCccc
Confidence            6677777777777666544

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=87.01  E-value=36  Score=34.28  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~  197 (417)
                      |+.|..+-..+- +.++..++..+..+..+.|++-.     ..+..++.-|.+++..+...|.+.|.+|....|..+..+
T Consensus       306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv  379 (988)
T KOG2038|consen  306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV  379 (988)
T ss_pred             HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence            333333333333 67788888888888777676644     344567777777888888888888888887777554432


Q ss_pred             HhcCCHHHHHHHhcC-CCchhHHHHHHHHHhhhhc
Q 014864          198 LSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       198 ~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~~  231 (417)
                           +..+.+++.. +.+.....+++.+|..+..
T Consensus       380 -----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L  409 (988)
T KOG2038|consen  380 -----IDEIERLAFRPNVSERAHYYAVIFLNQMKL  409 (988)
T ss_pred             -----HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence                 3344444422 2233344445555554443

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=86.93  E-value=19  Score=33.05  Aligned_cols=217  Identities=18%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       113 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      +...++..|..++....++......+.+|..-...-    ..-+...++..+.+-+.+..+.+|..-+..++......+.
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            344457777777776555666666666666544321    0011124556667777776666898888888887751111


Q ss_pred             HHHHHHhcCCHHHHHHHhcC---CCchhHH---HHHHHHHhhhhcCC-CCCCh------hhh---hchHHHHHHhhcC-C
Q 014864          193 CRDLVLSQGGLVPLLAQLNG---QPKLSML---RNATWTLSNFCRGK-PQPPF------DQV---SPALPALAHLIHS-N  255 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~~---~~~~~~~---~~a~~~l~~l~~~~-~~~~~------~~~---~~~l~~L~~ll~~-~  255 (417)
                      ....-.-..+++.|++.+..   ++-+..+   ..++.++..++... +....      ...   .+.+-.--+++.. .
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~  174 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA  174 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence            11111222366777777731   2211111   11111111111111 00000      000   0000000012222 3


Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 014864          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  333 (417)
                      +++-....+.++..+..+.......-....+-..++.++.++  .+.+|..|+..+..+....+..    +...++..+-
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~  250 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW  250 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence            344444555566555544332211111223567788888888  7999999999999999888764    2233455555


Q ss_pred             Hhhc
Q 014864          334 NLLS  337 (417)
Q Consensus       334 ~ll~  337 (417)
                      .++.
T Consensus       251 ~~l~  254 (339)
T PF12074_consen  251 KWLS  254 (339)
T ss_pred             HHHH
Confidence            5554

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.88  E-value=9  Score=29.63  Aligned_cols=73  Identities=16%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchh-HHHHHHHHHhhhhcC
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRG  232 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~a~~~l~~l~~~  232 (417)
                      ++..|-+-|.++++.++..|+.+|-.+..+ ++.+...+...+++..|..++....+.. ++..++..+..-...
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~  112 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA  112 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            566677778889999999999999998866 4568888888889999999996555444 888888777766654

Unpublished observations. Domain of unknown function.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.66  E-value=14  Score=35.75  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=75.6

Q ss_pred             hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (417)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (417)
                      .|++..++..+.+.+ ..++..++.+|.-+...-.+ ....+-+|.+..|..-+-+..+.++..|+.+|+.+-.....-.
T Consensus        90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            566888888888888 89999999999988775333 3344445788888887777889999999999999874433211


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATW  224 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~  224 (417)
                      ..     ....|+.++..+++.++++.++.
T Consensus       168 n~-----~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         168 NR-----IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             HH-----HHHHHHHHHhcCcHHHHHHHHHH
Confidence            11     34467777777788888887654

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.37  E-value=3.2  Score=32.33  Aligned_cols=74  Identities=7%  Similarity=-0.013  Sum_probs=58.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~~l~~  146 (417)
                      +++..+.+.|++.++.++..|+..|..++.....+...++...+++..|+.+++.     ..++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4677888889999999999999999888776545566678888899999999963     1237888888877776654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.30  E-value=3.7  Score=34.90  Aligned_cols=83  Identities=23%  Similarity=0.282  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHhhhhcCCCC-------CChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHH-HHHcCC
Q 014864          216 LSMLRNATWTLSNFCRGKPQ-------PPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQA-VIEAGV  286 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~-------~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~  286 (417)
                      .+-++.++.+|+.||-.+.+       +++..+...+..|++++... ++-.++-++..|.+|+.++...... ..+.+.
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            45689999999999987643       44556677888888888655 7778899999999999988776544 355578


Q ss_pred             hHHHHhhcCCCC
Q 014864          287 FPRLAEFLMHPS  298 (417)
Q Consensus       287 ~~~L~~~l~~~~  298 (417)
                      +..|+.++...+
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            888888886543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.77  E-value=23  Score=30.75  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHH
Q 014864          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQ  362 (417)
Q Consensus       284 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~  362 (417)
                      ...++.++.+++.++.    ..-..+|......-..+-+.+-.|-++.|..++.++. +.-+|..|+.+|..++...+..
T Consensus        72 ~~A~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~  147 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS  147 (249)
T ss_pred             hhhHHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3467888998876653    2222333333222222223334466777778887663 5688999999999999866665


Q ss_pred             HHHHHHCCCHHHHHHH-hccCCHH
Q 014864          363 IQAVIEANIIGPLVAL-LENAEFD  385 (417)
Q Consensus       363 ~~~l~~~~~i~~L~~~-l~~~~~~  385 (417)
                      +..+++  .+..++.. +...+..
T Consensus       148 Re~vi~--~f~~ll~~~l~~~~~~  169 (249)
T PF06685_consen  148 REEVIQ--YFRELLNYFLERNPSF  169 (249)
T ss_pred             HHHHHH--HHHHHHHHHhccCchH
Confidence            665554  34444444 4433333

The function of this family is unknown.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=85.68  E-value=16  Score=28.77  Aligned_cols=96  Identities=9%  Similarity=0.100  Sum_probs=69.6

Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHH
Q 014864          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIG  373 (417)
Q Consensus       295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~  373 (417)
                      ..+++......|..+..=    +....     .++..|.+-+.+. ++.++..|...|-.++.++.. ....+.+.+++.
T Consensus        14 ~~~dw~~il~icD~I~~~----~~~~k-----~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~   83 (144)
T cd03568          14 TSENWGLILDVCDKVKSD----ENGAK-----DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ   83 (144)
T ss_pred             CCcCHHHHHHHHHHHhcC----CccHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence            345666666666665432    11111     2456678888888 999999999999999885544 445666788999


Q ss_pred             HHHHHhcc-CCHHHHHHHHHHHHHhhCC
Q 014864          374 PLVALLEN-AEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       374 ~L~~~l~~-~~~~v~~~a~~~L~nl~~~  400 (417)
                      .|..++.. .++.|+..++..+...+..
T Consensus        84 eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          84 ELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            99999987 7899999999988887543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=85.45  E-value=19  Score=29.50  Aligned_cols=80  Identities=20%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             hhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~  319 (417)
                      ....+|.++.-|...+...+--|...+..|... ..+.+-.++.. ++..|...|.+.++++...++.+|..++..++..
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            367889999888877766666666677666655 44444444433 6677778888999999999999999997666544


Q ss_pred             HH
Q 014864          320 TQ  321 (417)
Q Consensus       320 ~~  321 (417)
                      -.
T Consensus       115 G~  116 (183)
T PF10274_consen  115 GE  116 (183)
T ss_pred             hH
Confidence            33

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=85.22  E-value=4.1  Score=41.65  Aligned_cols=130  Identities=15%  Similarity=0.193  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh
Q 014864          173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI  252 (417)
Q Consensus       173 ~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll  252 (417)
                      +.++.+++-+|+++|-......     ...+|.|++-|..++...++.+.+-+++.+|...    -......+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            5788899999999985544332     2368899999988888888888888888888752    134467889999999


Q ss_pred             cCCChHHHHHHHHHHHHhccCChHHHHHHHHc-C-ChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-G-VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       253 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~-~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      .++++-|+..++-.|.+|....      +++- | ++-+++--+-+.+++++.-|=.+++.+.....
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999986432      1221 1 22333333445677899999999998875443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.98  E-value=73  Score=35.89  Aligned_cols=231  Identities=13%  Similarity=0.108  Sum_probs=129.1

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCCh
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF  238 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~  238 (417)
                      .+..++..+..+++..+-.+..+++.++...+..  . .-.+....++.-+.+..|+-.+..-.-++..+-++. .....
T Consensus       877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            3445555666688888888888888888543321  1 112245566666756667777766667777777765 33444


Q ss_pred             hhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc---
Q 014864          239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT---  314 (417)
Q Consensus       239 ~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~---  314 (417)
                      ......+..+..+-.++ ++.|+..++.++..+.+.........+.. .+..+..+|-+..+ .......+++....   
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCc-chhhhhhhhccccccch
Confidence            55566677777777665 56999999999999886554433333332 33444444443221 22222222222222   


Q ss_pred             --------------CChH--HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH
Q 014864          315 --------------GDDM--QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL  378 (417)
Q Consensus       315 --------------~~~~--~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~  378 (417)
                                    ++..  .+. .+..-.+-...-++.++ ++.++.++..++-++---.|.+..   -.-+++.|..+
T Consensus      1032 ~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSL 1106 (2067)
T ss_pred             hHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHH
Confidence                          2211  111 11111122222334444 888999999999888653332211   11356677777


Q ss_pred             hccCCHHHHHHHHHHHHHhhCC
Q 014864          379 LENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       379 l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +.+...-.|.....++.-++.+
T Consensus      1107 l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             hcchhhhhhhhHHhhhhHHhHH
Confidence            7766655656666666555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=84.69  E-value=44  Score=33.11  Aligned_cols=160  Identities=18%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHH---hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL  207 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~  207 (417)
                      .++++-|+.+|+-+..+.+..-..+.   .+..+..++..+. .++..+-.++++|.|+..+ +..++.+...  ...++
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~  633 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL  633 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence            68888899999888876543332222   2234455555554 5577788899999999888 5566665543  33333


Q ss_pred             HHhc---CCCchhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          208 AQLN---GQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       208 ~ll~---~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      ..+.   ..++..++....-...|++-.-  ...+.....-+...+..++.. +|-+.....+.+|++|+..+....+..
T Consensus       634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A  713 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLA  713 (745)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHH
Confidence            3321   2233444444333333433221  111111112222223333322 244456667888889887776554433


Q ss_pred             HHcCChHHHHhhcC
Q 014864          282 IEAGVFPRLAEFLM  295 (417)
Q Consensus       282 ~~~~~~~~L~~~l~  295 (417)
                      ... -+..++.-++
T Consensus       714 ~~~-~v~sia~~~~  726 (745)
T KOG0301|consen  714 KNR-SVDSIAKKLK  726 (745)
T ss_pred             Hhc-CHHHHHHHHH
Confidence            322 3455555544

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=83.70  E-value=11  Score=43.26  Aligned_cols=269  Identities=13%  Similarity=0.147  Sum_probs=135.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH----H--hCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchH
Q 014864          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV----I--DHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRC  193 (417)
Q Consensus       121 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i----~--~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~  193 (417)
                      +..++...+ ++++..+....+.+...... ....    +  ....+..+..+- .++++.++......+.      ..+
T Consensus       486 ~~~~~~~~~-~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~  557 (2341)
T KOG0891|consen  486 VDSYLEADD-SEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERF  557 (2341)
T ss_pred             HHHHHhccc-HHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cch
Confidence            444555566 78888887766666554222 0000    0  112233333322 2355555544444333      111


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc-hHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      -......+.+..++..+ .+..-.++..+.-.+.+++..+|......... .+..+..+-.+.-.-+......-+..+..
T Consensus       558 ~~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~  636 (2341)
T KOG0891|consen  558 DAQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII  636 (2341)
T ss_pred             hhhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence            11122222333344444 55566778888888888888765221111111 11112222222222222222222222222


Q ss_pred             CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      .....+...+ ...+..++..+.+++..+...++.+++.++...........+ ..++.+.+.+.+..+..-+..+.+++
T Consensus       637 ~~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l  714 (2341)
T KOG0891|consen  637 SSPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKAL  714 (2341)
T ss_pred             HHHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHh
Confidence            2222222112 235567777788888888899999999998766533333334 45566666665553566778888999


Q ss_pred             HHHhcCCHHHHHHHH-HCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCC
Q 014864          353 SNITAGNREQIQAVI-EANIIGPLVALLENA-EFDIKKEAAWAISNATSG  400 (417)
Q Consensus       353 ~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~  400 (417)
                      +++.+...-...... ...++..|++.+... ...++.++...++++...
T Consensus       715 ~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  715 GQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             hhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            999874221111111 123445555555443 456778888888766543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=83.31  E-value=20  Score=34.12  Aligned_cols=228  Identities=11%  Similarity=0.053  Sum_probs=113.8

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC----CCCChhhhhchHH
Q 014864          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP  246 (417)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~  246 (417)
                      +|+-+....++++.-+-..-......++.. .+..+....+...++..-.....+++.+.+..    +..........+|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            456666666666665554444344443332 33333333334446776666666666555432    2222345577889


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcCCC-Chh---hHHHHHHHHHHhhcCChHHHH
Q 014864          247 ALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP-SPS---VLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       247 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~~-~~~---v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      .+...|+.+-.+...++...++.|.+... ....    . ....|...|-++ -|+   -.-...+.|..+....+... 
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~-~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i-  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----D-AYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI-  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------T-TTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----H-HHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh-
Confidence            99999998878888888888888876544 1111    1 122222222222 121   12344455666554444332 


Q ss_pred             HHHHc----CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHhc-cCCHHHHHHHHHHHH
Q 014864          322 CVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLE-NAEFDIKKEAAWAIS  395 (417)
Q Consensus       322 ~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~~~L~  395 (417)
                        ...    +++..+-+++.+. .  --..+...|..+...-+ +..+..+. .++..++.-|. +...+..+.-+..++
T Consensus       195 --~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~  268 (435)
T PF03378_consen  195 --VANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLS  268 (435)
T ss_dssp             -----S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred             --cchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence              222    3344444566655 2  22456777777776433 33333332 35555555555 445666767677777


Q ss_pred             HhhCCCCHHHHHHHHh
Q 014864          396 NATSGGTHEQIKYEHT  411 (417)
Q Consensus       396 nl~~~~~~~~~~~l~~  411 (417)
                      .++..-+++..-..++
T Consensus       269 ~~~~~~g~~~li~~id  284 (435)
T PF03378_consen  269 LFAIKYGPDFLIQTID  284 (435)
T ss_dssp             HHHHHH-HHHHHHHHH
T ss_pred             HHHHHcCHHHHHHHHH
Confidence            6666556665555554

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.29  E-value=75  Score=34.70  Aligned_cols=73  Identities=11%  Similarity=0.181  Sum_probs=57.3

Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       326 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .+++|.|..-|.+. +..+|..|...+|.+......+.. =-........+.-+.+..++||.+++....++...
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            48899999999999 999999999999999886444332 01224555666677788999999999999998776

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=82.87  E-value=36  Score=31.58  Aligned_cols=153  Identities=18%  Similarity=0.085  Sum_probs=90.0

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----------CCChHHHHHHHHHHHHhccCC
Q 014864          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDGT  274 (417)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------~~~~~v~~~a~~~l~~l~~~~  274 (417)
                      .++..+.+......+..++.++.-|+++............+..|+.+-.          .+|..+...++.||+|+..++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            4455553333455556667777777776533333333444444443321          134578899999999999988


Q ss_pred             hHHHHHHHHcCChHHHHhhcCC----CC-hhhHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhcCCC--------
Q 014864          275 NDKIQAVIEAGVFPRLAEFLMH----PS-PSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNY--------  340 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~l~~----~~-~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~--------  340 (417)
                      ....+..........+.+.+..    +- ..+...-++.|--+..-. +...+.+.+.++++.+.+++.+..        
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            8777777777666666555431    11 123333334443333322 344455667799999999997542        


Q ss_pred             ------chhHHHHHHHHHHHHhc
Q 014864          341 ------KKSIKKEACWTVSNITA  357 (417)
Q Consensus       341 ------~~~v~~~a~~~L~nl~~  357 (417)
                            ....-.++..++.|++.
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheee
Confidence                  11344577788888875

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=82.44  E-value=43  Score=32.34  Aligned_cols=145  Identities=15%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhC
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIAS  146 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~l~~  146 (417)
                      -+.++.+.+-++|+..+..|+..|+.      ++.+.++     +|.|+.++..+-       +-.........+..|..
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~L-----lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~  276 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQL-----LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD  276 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHHH-----HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence            35677777778888888888888752      4455554     888888887532       25566677777777777


Q ss_pred             CCchhHHHHHhCCChhHHHHhhCC----------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-Cc
Q 014864          147 GTSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PK  215 (417)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~ll~~----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~  215 (417)
                      +..-.....+. ..+|.++.++-+          .+..++..|+..+..++.+-....+. +...++..+.+.+.+. ..
T Consensus       277 Np~i~lepYlh-~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~  354 (576)
T KOG2549|consen  277 NPNIFLEPYLH-QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP  354 (576)
T ss_pred             CCccchhhHHH-HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence            53333333332 567777766532          34678999999999888554433233 3444666677766444 24


Q ss_pred             hhHHHHHHHHHhhhhc
Q 014864          216 LSMLRNATWTLSNFCR  231 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~  231 (417)
                      .....-++..|..|..
T Consensus       355 ~st~YGai~gL~~lg~  370 (576)
T KOG2549|consen  355 LSTHYGAIAGLSELGH  370 (576)
T ss_pred             chhhhhHHHHHHHhhh
Confidence            4455555555555544

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.33  E-value=16  Score=26.40  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHH
Q 014864          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWAL  183 (417)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L  183 (417)
                      ....+..|+++.+.+. ...+..++..+..+... +.....+.+-|+...|.++=..-++..+...-.++
T Consensus        28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4567888999999888 66889999999998885 77888888889999877766656666655444333

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=82.24  E-value=11  Score=29.37  Aligned_cols=75  Identities=17%  Similarity=0.117  Sum_probs=57.2

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchh---HHHHHHHHHhhhhcCC
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLS---MLRNATWTLSNFCRGK  233 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~---~~~~a~~~l~~l~~~~  233 (417)
                      .++..|-+-|.++++.++..|+.+|-.+..+. +.++..+....++..|.+++.......   ++..++..+.......
T Consensus        42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            35666777888899999999999999888665 567788878888899999886544433   7888887776666543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=81.97  E-value=35  Score=29.96  Aligned_cols=213  Identities=17%  Similarity=0.128  Sum_probs=113.1

Q ss_pred             HhhhcCCChHHHHHHHHHHHHhhhCCC--CCcHHH-HH-----------HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014864           79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEE-VI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI  144 (417)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~-~~-----------~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l  144 (417)
                      +.+|.+..+..-..|+..+.+++..-+  ++.... +.           -.|+.+.+++=+.++.   ....+...|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            456666666666777777776655421  111111 11           1233333333334433   234455555555


Q ss_pred             hCCC-------chhHHHHHhCCChhHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC
Q 014864          145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ  213 (417)
Q Consensus       145 ~~~~-------~~~~~~i~~~g~i~~L~~ll~~~~----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~  213 (417)
                      +...       ++.+-.+.=.+.+|.++.-+.+++    ......++..|+.+|....        ...+..++..+.+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            5421       112222222245677777777665    2344566688888874322        12344444444333


Q ss_pred             C---chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864          214 P---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (417)
Q Consensus       214 ~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  290 (417)
                      .   ..+....++..++.-..  |.    .....+-.+..+|.+.-+.++..++..|..+....+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence            2   23444444444443221  21    2245667788899888889999999999988765443322  444578888


Q ss_pred             HhhcCCCChhhHHHHHHHHHHhh
Q 014864          291 AEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       291 ~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                      ..+++.+..   ..|+.+|-++.
T Consensus       234 lrlL~t~~~---~eAL~VLd~~v  253 (262)
T PF14225_consen  234 LRLLQTDLW---MEALEVLDEIV  253 (262)
T ss_pred             HHHhCCccH---HHHHHHHHHHH
Confidence            888877653   45555555544

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=81.91  E-value=52  Score=31.89  Aligned_cols=97  Identities=13%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l  379 (417)
                      .+...|+..++-++.+.+-..+++     +..+-..+..+ ++.+|+..-.+++-+...+|..       +++..|-+..
T Consensus       619 ~ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~s  685 (881)
T COG5110         619 LIESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSS  685 (881)
T ss_pred             HHHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhc
Confidence            444555555666677776555543     34455556666 8899998888888887777742       4677888888


Q ss_pred             ccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864          380 ENAEFDIKKEAAWAISNATSGGTHEQIKYE  409 (417)
Q Consensus       380 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l  409 (417)
                      ++++.++..+++.+++-+-.+.....+..+
T Consensus       686 hd~dl~v~~ntIfamGLiGAGT~NaRlaql  715 (881)
T COG5110         686 HDGDLNVIINTIFAMGLIGAGTLNARLAQL  715 (881)
T ss_pred             cccchhHHHHHHHHhhccccCcchHHHHHH
Confidence            889999999999999887766544333333

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=81.77  E-value=19  Score=38.38  Aligned_cols=236  Identities=17%  Similarity=0.176  Sum_probs=127.3

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV--------EFLLREDYPQLQFEAAWALTNIA  145 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv--------~lL~~~~~~~~~~~a~~~L~~l~  145 (417)
                      .++.|++.+-++.++.|.-++..++.++..+....-...++.-++..+.        .+....-...++...+|+|..+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            4677888888999999999999999998765333222222222222221        22221112468889999999887


Q ss_pred             CCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH--hcCCHHHHHHHhcCCCchhHHHHHH
Q 014864          146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL--SQGGLVPLLAQLNGQPKLSMLRNAT  223 (417)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~a~  223 (417)
                      .+..+.  .+.  ..+..+.+++..++.+++...+..+.....   ..++.+.  -..+++..+.-+ .+.+.+++..++
T Consensus       158 ~~~~~s--~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa  229 (1549)
T KOG0392|consen  158 KHMDES--LIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA  229 (1549)
T ss_pred             HhhhhH--hhH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence            743221  111  346677777777766666555544433221   0111111  001233334444 566778888888


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChH--HHHHHHHHHHHhccCChH--H-HHHHHHcCChHHHHhhcCCCC
Q 014864          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE--VLTDACWALSYLSDGTND--K-IQAVIEAGVFPRLAEFLMHPS  298 (417)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~--~-~~~~~~~~~~~~L~~~l~~~~  298 (417)
                      .++.......+......+..++..+...+..-|.-  -.......+..++...+.  . .+.-...|++|.+...+.+.-
T Consensus       230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i  309 (1549)
T KOG0392|consen  230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI  309 (1549)
T ss_pred             HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence            87776665543323233333344443333222110  011112223333333211  0 111122488999999999887


Q ss_pred             hhhHHHHHHHHHHhhcCCh
Q 014864          299 PSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       299 ~~v~~~a~~~L~~l~~~~~  317 (417)
                      ..++..++..+..+....+
T Consensus       310 ~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  310 SSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            8888889999888876543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=81.74  E-value=27  Score=28.58  Aligned_cols=118  Identities=8%  Similarity=0.028  Sum_probs=72.5

Q ss_pred             CChHHHHhhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (417)
Q Consensus       285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (417)
                      ..++.+++-|...+...+--|...+..+... ..+..- .+-..++.++...|++. ++++...++.+|..++..++..-
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-PvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-PVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence            3677788888877766777777777777665 333332 33347888899999999 99999999999999965433322


Q ss_pred             HHHHH--CCCHHHHHHHhc-----------cCCHHHHHHHHHHHHHhhCCCCHH
Q 014864          364 QAVIE--ANIIGPLVALLE-----------NAEFDIKKEAAWAISNATSGGTHE  404 (417)
Q Consensus       364 ~~l~~--~~~i~~L~~~l~-----------~~~~~v~~~a~~~L~nl~~~~~~~  404 (417)
                      ..++-  ..++|.+--+.+           .....+..-...+|..+-..|.++
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            33321  112332221111           122455566666666666655443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=81.65  E-value=28  Score=35.81  Aligned_cols=145  Identities=17%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      -+..+...+.++++..-...+.++..+..-+.-++..   ...-++.-..-.+..- ..+......+|..++.-+++...
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~  517 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK  517 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            3566777777788777777777777775543222221   1111111111112222 45667788899999998887777


Q ss_pred             HHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          154 VVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       154 ~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      .+.. .++...++.++-+++.++.+.|...|.......  .|..     ++..|++    ..-........+.+..+...
T Consensus       518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~e-----~i~~ll~----~~~~~tL~ai~~~l~~~~~~  586 (727)
T PF12726_consen  518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRLE-----AIQALLQ----SNFSPTLSAINWSLRQLTKL  586 (727)
T ss_pred             HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHHH-----HHHHHHH----HhHHHHHHHHHHHHHHHHhh
Confidence            6665 588899999999999999999999999987532  2222     2333332    22345566777777777765


Q ss_pred             C
Q 014864          233 K  233 (417)
Q Consensus       233 ~  233 (417)
                      .
T Consensus       587 ~  587 (727)
T PF12726_consen  587 K  587 (727)
T ss_pred             h
Confidence            4

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.34  E-value=27  Score=37.64  Aligned_cols=276  Identities=16%  Similarity=0.110  Sum_probs=136.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH-Hh-CCChhHHHH--hhCCCCHHHHHHHHHHHHHhhCCCchH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV-ID-HGAVPIFVK--LLYSPSDDVREQAVWALGNIAGDSPRC  193 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~-~g~i~~L~~--ll~~~~~~i~~~a~~~L~nl~~~~~~~  193 (417)
                      .+.|.......- ..++..++.++.+.+..+......+ .+ .|.+-....  ....+..+++...+.++.++.....+.
T Consensus       798 a~~l~t~~n~vl-~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~  876 (1610)
T KOG1848|consen  798 APELRTRANNVL-ASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEH  876 (1610)
T ss_pred             HHHHHHHHHHHH-HHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchh
Confidence            333433333333 3455555555655555432222221 11 133322222  223456677777778887776443221


Q ss_pred             HHHHHhcCCHHHHHHHhc---CC---CchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcC-CChHHHHHHHH
Q 014864          194 RDLVLSQGGLVPLLAQLN---GQ---PKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACW  265 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~---~~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~  265 (417)
                          .-.| -+.+.+++.   ..   ....+.+.+..++.-++.+. +..+...+.+++..+..+... .|-.+--.|+.
T Consensus       877 ----ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~  951 (1610)
T KOG1848|consen  877 ----LLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIG  951 (1610)
T ss_pred             ----hccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence                1111 222222221   11   24567777777777777766 666667777777777776643 35444444443


Q ss_pred             HHHHhc---cC------ChHHHH-------------HHHHcCC----hHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-H
Q 014864          266 ALSYLS---DG------TNDKIQ-------------AVIEAGV----FPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-M  318 (417)
Q Consensus       266 ~l~~l~---~~------~~~~~~-------------~~~~~~~----~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~  318 (417)
                      .++.++   ..      .+....             .+...++    +..|.++-.+.-++||..|+.++-.+...+. .
T Consensus       952 lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~ 1031 (1610)
T KOG1848|consen  952 LFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSK 1031 (1610)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhccc
Confidence            333332   11      111100             0111111    1222233334446788888888777654322 1


Q ss_pred             HHHHHHHcCChHHHHHhhcCCC--------chhH----HHHHHHHHHHHhcCCHHHHHHHHHCC-C---HHHHHH----H
Q 014864          319 QTQCVIEYQALPCLLNLLSGNY--------KKSI----KKEACWTVSNITAGNREQIQAVIEAN-I---IGPLVA----L  378 (417)
Q Consensus       319 ~~~~~~~~~~l~~L~~ll~~~~--------~~~v----~~~a~~~L~nl~~~~~~~~~~l~~~~-~---i~~L~~----~  378 (417)
                      ......+.-+...++.+|....        ..++    -+..+.+|+-|+.-.+++...+.+.+ +   -+.++.    +
T Consensus      1032 l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl 1111 (1610)
T KOG1848|consen 1032 LGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRL 1111 (1610)
T ss_pred             CChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            1112233334556666665211        1223    23567788888876677777666532 2   233333    3


Q ss_pred             hccCCHHHHHHHHHHHHHhhC
Q 014864          379 LENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       379 l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ..+..+++...|..++..+..
T Consensus      1112 ~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1112 HSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HhcCChHhHHHHHHHHHHHHH
Confidence            346678888888877766544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=80.51  E-value=18  Score=32.21  Aligned_cols=114  Identities=7%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhh----c--------CCCchhHHHHHHHHH
Q 014864          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLL----S--------GNYKKSIKKEACWTV  352 (417)
Q Consensus       286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll----~--------~~~~~~v~~~a~~~L  352 (417)
                      ++|.++.++.+.++.++..++.++..+....+... ..+...|..+.+.+.+    .        .. ...+-..|.-++
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHHHHHHH
Confidence            68999999999999999999999999997665433 2345566665544443    2        22 456777777777


Q ss_pred             HHHhc-----C---CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          353 SNITA-----G---NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       353 ~nl~~-----~---~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ..++.     +   .......++..|++..+...-+...++++...+..+..++..
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~  254 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE  254 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence            77743     1   122333344444444433333333466776666666665554

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=80.12  E-value=16  Score=33.51  Aligned_cols=102  Identities=15%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhCCC
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGT  148 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~~l~~~~  148 (417)
                      +..+.+.+.+++...+..|+..|+.      ++....     ++|.|+.++...-      +-......+..+..|....
T Consensus       180 f~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~  248 (343)
T cd08050         180 FEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP  248 (343)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence            4455556666666666666666542      333433     3888888876531      1455555666666676654


Q ss_pred             chhHHHHHhCCChhHHHHhhCC----------CCHHHHHHHHHHHHHhhC
Q 014864          149 SEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAG  188 (417)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~ll~~----------~~~~i~~~a~~~L~nl~~  188 (417)
                      .-.....+. ..+|.++.++-.          .+..+|+.|+.+|+.++.
T Consensus       249 ~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~  297 (343)
T cd08050         249 NLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR  297 (343)
T ss_pred             CCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence            333333333 367777766622          346889999999999873

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	417
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
4b8j_A	528	Rimp_alpha1a Length = 528		1e-15
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-169
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-111
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		3e-06
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-105
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-105
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-104
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		4e-06
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-104
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-103
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-103
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-103
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		4e-06
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-103
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		4e-06
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-101
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		7e-97
1ial_A	453	Importin Alpha, Mouse Length = 453		9e-97
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		9e-97
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		9e-97
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-96
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-96
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-96
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-96
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-96
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-96
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-96
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		2e-96
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		2e-96
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		2e-96
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		3e-94
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-35
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-32
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		3e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-28
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-26
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-23
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		4e-17
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		2e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		2e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		2e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		2e-04
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		2e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		2e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		2e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		2e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		2e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		2e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		2e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		3e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		3e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		5e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/408 (81%), Positives = 367/408 (89%), Gaps = 1/408 (0%)
Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIKY
Sbjct: 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 409

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           L+  +  ++  +A WAL+ ++ GT++  + VI+ G  P  V+LL  PS  V   A+  +G
Sbjct: 252 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311
Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           NI          ++    L  LL+ L    K S+ + A WT+SN   G      DQ+   
Sbjct: 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAV 367
Query: 245 LPA-----LAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           + A     L +L+ + + ++  +A WA+S   S G++D+I+ ++  G    L + L+ P 
Sbjct: 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 427
Query: 299 PSVLIPALRTVGNIV----------TGD-DMQTQCVIEYQALPCLLNLLSGN----YKKS 343
             ++   L  + NI+           GD ++ +Q + E + L  + NL S +    Y+K+
Sbjct: 428 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487
Query: 344 IK-KEACW 350
           +K  EA W
Sbjct: 488 VKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  590 bits (1522), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/368 (77%), Positives = 320/368 (86%), Gaps = 1/368 (0%)
Query: 41  REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
           +E +  K  R+ + +   L  D +    A    +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5   KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63
Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
           LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
           NATWTLSNFCRGKPQP F+Q  PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243
Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
           VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N 
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303
Query: 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           KKSIKKEACWT+SNITAGN++QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSG
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 363
Query: 401 GTHEQIKY 408
           G+H+QIKY
Sbjct: 364 GSHDQIKY 371

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/406 (54%), Positives = 280/406 (68%), Gaps = 14/406 (3%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
           P  +  + +NK + +  ADE RRRR+   VE+RK KR+E+L K+R      +G  + +  
Sbjct: 14  PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71
Query: 60  ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
            + V+A     ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131
Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
           EQA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249
Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
           P +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           H S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNI 368
Query: 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
           TAGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   +P L+  +  N  + ++ EA W ++NI +G   Q + V++A+ +   + LL   
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185
Query: 383 EFDIKKEAAWAISNATSGGT 402
             ++K++A WA+ N     T
Sbjct: 186 SVEVKEQAIWALGNVAGDST 205

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/333 (60%), Positives = 243/333 (72%), Gaps = 3/333 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIKY
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/333 (60%), Positives = 243/333 (72%), Gaps = 3/333 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIKY
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 353

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/329 (60%), Positives = 239/329 (72%), Gaps = 5/329 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGG 401
            PLV LLE AE+  KKEA WAISNA+SGG
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGG 326

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   +P L+  +  N  + ++ EA W ++NI +G   Q + V++A+ +   + LL   
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 383 EFDIKKEAAWAISNATSGGT 402
             ++K++A WA+ N     T
Sbjct: 98  SVEVKEQAIWALGNVAGDST 117

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/331 (60%), Positives = 239/331 (72%), Gaps = 5/331 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH 403
            PLV LLE AE+  KKEA WAISNA+SGG  
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQ 328

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/333 (60%), Positives = 239/333 (71%), Gaps = 5/333 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403
           +I PLV LLE AE   KKEA WAISNA+SGG  
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQ 330

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/333 (60%), Positives = 239/333 (71%), Gaps = 5/333 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403
           +I PLV LLE AE   KKEA WAISNA+SGG  
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQ 330

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/329 (60%), Positives = 239/329 (72%), Gaps = 5/329 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGG 401
            PLV LLE AE   KKEA WAISNA+SGG
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGG 327

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   +P L+  +  N  + ++ EA W ++NI +G   Q + V++A+ +   + LL   
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 383 EFDIKKEAAWAISNATSGGT 402
             ++K++A WA+ N     T
Sbjct: 99  SVEVKEQAIWALGNVAGDST 118

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/329 (60%), Positives = 239/329 (72%), Gaps = 5/329 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGG 401
            PLV LLE AE   KKEA WAISNA+SGG
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGG 327

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   +P L+  +  N  + ++ EA W ++NI +G   Q + V++A+ +   + LL   
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 383 EFDIKKEAAWAISNATSGGT 402
             ++K++A WA+ N     T
Sbjct: 99  SVEVKEQAIWALGNVAGDST 118

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/414 (49%), Positives = 267/414 (64%), Gaps = 18/414 (4%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
           P ++ +  +NK K   D+ E RRRR +  VE+RK K++E + K+R           PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67  NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-P 234
           WALGNIAG     RDLV+  G + PLLA L   P LS      LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
            PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
                 ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361
Query: 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           ITAG ++QIQ V+   ++  LV +L  A+F  +K AAWAI+N TSGGT EQI Y
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY 415

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  350 bits (898), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  350 bits (898), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 188/358 (52%), Positives = 240/358 (67%), Gaps = 12/358 (3%)
Query: 58  PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
           PL  + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G
Sbjct: 20  PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + 
Sbjct: 77  LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCR 231
           EQAVWALGNIAGD    RDLV+  G + PLLA L   P LS      LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
            K P PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
            + L      ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314
Query: 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           T+SNITAG ++QIQ V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 315 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 372

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  350 bits (898), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 382

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  350 bits (898), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  350 bits (898), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 352

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 380

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 345

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  349 bits (896), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  349 bits (896), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  349 bits (896), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 345

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  349 bits (895), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 341

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  349 bits (895), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 231/337 (68%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 341

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 178/337 (52%), Positives = 229/337 (67%), Gaps = 8/337 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ S++   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P +S      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H +D EVL D CWA+SYL+DG N++I  V++ GV P+L + L      ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 310
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +  LV++L  A+F  +KEA WA++N TSGGT EQI Y
Sbjct: 311 VPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVY 347

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 130/230 (56%), Gaps = 8/230 (3%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHL 251
             V+  G L P L QL   P   +L+ A W LSN   G   + Q   D  + ALPAL  L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 4/192 (2%)
Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           Q +LS  R  +  LS+    + Q   D  + ALPAL  L+ S ++++L +A WALS ++ 
Sbjct: 27  QEQLSATRKFSQILSDGNE-QIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
           G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392
           + LLS +  + I +EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA W
Sbjct: 144 VQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 202
Query: 393 AISNATSGGTHE 404
           A+SN  SGG  +
Sbjct: 203 ALSNIASGGNEQ 214

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404
           AVI+A  +  LV LL +    I +EA WA+SN  SGG  +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404
           AVI+A  +  LV LL +    I +EA WA+SN  SGG  +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 4/182 (2%)
Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           Q +LS  R  +  LS+    + Q   D  + ALPAL  L+ S ++++L +A WALS ++ 
Sbjct: 27  QEQLSATRKFSQILSDGNE-QIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
           G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392
           + LLS +  + I +EA W +SNI +G  EQ QAV EA  +  L  L  +    I+KEA  
Sbjct: 144 VQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 393 AI 394
           A+
Sbjct: 203 AL 204

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 129/284 (45%), Gaps = 44/284 (15%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +A  AL NIA         ++  GG+                                  
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGGV---------------------------------- 88
Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                     L  L+ S D EV  +A  AL+ ++ G ++ I+A+++AG    L + L   
Sbjct: 89  --------EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140
Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A R + NI +G D   + +++   +  L+ LL+ +    ++KEA   ++NI +
Sbjct: 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS 199
Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
           G    I+A+++A  +  L  LL + + +++KEA  A+ N  SGG
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 8/203 (3%)
Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEVL 260
           LV LL   + + +    + A   L+    G P      +  A  +  L  L+ S D EV 
Sbjct: 7   LVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
            +A  AL+ ++ G ++ I+A+++AG    L + L      V   A R + NI +G D   
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + +++   +  L+ LL+ +    ++KEA   ++NI +G  E I+A+++A  +  LV LL 
Sbjct: 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 381 NAEFDIKKEAAWAISNATSGGTH 403
           + + +++KEAA A++N  SG T 
Sbjct: 181 STDSEVQKEAARALANIASGPTS 203

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 55  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 111
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 112 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 170
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 171 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 229
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 230 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 285
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 286 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 340

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 58  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 114
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 115 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 173
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 174 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 232
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 233 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 288
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 289 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 343

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 57  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 113
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 114 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 172
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 173 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 231
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 232 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 287
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 288 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 342

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 51  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 166
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 225
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 281
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLV--ALLENAEFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV   L      DI + A  A+ + TS
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 118/288 (40%), Gaps = 13/288 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
           P+ V  ++R        E A          S H +    +   G +P  VK+L SP D V
Sbjct: 45  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 104
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
              A+  L N+       +  V   GGL  ++A LN +  +  L   T  L     G  +
Sbjct: 105 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 163
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                ++   P AL +++ +   +++L      L  LS  +++K  A++EAG    L   
Sbjct: 164 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 222
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++   A   +S
Sbjct: 223 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 278
Query: 354 NITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
           N+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 279 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 326

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 118/288 (40%), Gaps = 13/288 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
           P+ V  ++R        E A          S H +    +   G +P  VK+L SP D V
Sbjct: 43  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 102
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
              A+  L N+       +  V   GGL  ++A LN +  +  L   T  L     G  +
Sbjct: 103 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 161
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                ++   P AL +++ +   +++L      L  LS  +++K  A++EAG    L   
Sbjct: 162 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 220
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++   A   +S
Sbjct: 221 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 276
Query: 354 NITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
           N+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 277 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 118/288 (40%), Gaps = 13/288 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
           P+ V  ++R        E A          S H +    +   G +P  VK+L SP D V
Sbjct: 43  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 102
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
              A+  L N+       +  V   GGL  ++A LN +  +  L   T  L     G  +
Sbjct: 103 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 161
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                ++   P AL +++ +   +++L      L  LS  +++K  A++EAG    L   
Sbjct: 162 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 220
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++   A   +S
Sbjct: 221 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 276
Query: 354 NITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
           N+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 277 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 54  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 110
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 169
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 228
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 284
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 118/288 (40%), Gaps = 13/288 (4%)
Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
           P+ V  ++R        E A          S H +    +   G +P  VK+L SP D V
Sbjct: 47  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 106
Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
              A+  L N+       +  V   GGL  ++A LN +  +  L   T  L     G  +
Sbjct: 107 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE 165
Query: 236 PPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                ++   P AL +++ +   +++L      L  LS  +++K  A++EAG    L   
Sbjct: 166 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLH 224
Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++   A   +S
Sbjct: 225 LTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILS 280
Query: 354 NITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
           N+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 281 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 328

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A   +      S H +    +   G +P  V +L
Sbjct: 187 IMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 302
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   +++L      L  LS  +++K  A++EAG 
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 361
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 417
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLV--ALLENAEFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV   L      DI + A  A+ + TS
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-166
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-49
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-159
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-51
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-41
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-24
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-154
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-46
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-39
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-31
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-16
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-73
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-63
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-49
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-74
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-56
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-72
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-69
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-61
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-59
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-39
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-71
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-51
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-60
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-54
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-48
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-55
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-27
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-22
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-48
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-24
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-44
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-27
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-38
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-05
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	1e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-10
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	9e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	5e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	6e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  477 bits (1228), Expect = e-166
 Identities = 219/414 (52%), Positives = 272/414 (65%), Gaps = 14/414 (3%)

Query: 7   SKADSRRNKYK--VAVDADEGRRRREDNMVEIRKNKREESLQKKRR-------EGLQNQQ 57
              + RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             + 
Sbjct: 12  FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71

Query: 58  PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             +   +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           VPR VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRGK PQP
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
            S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNIT
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNIT 369

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKY 408
           AGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I+Y
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  173 bits (439), Expect = 6e-49
 Identities = 61/337 (18%), Positives = 124/337 (36%), Gaps = 19/337 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P+ +  +++    V+ +       + + + +   + V++   +   +  L   + P L 
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNV-AGDSTDYRDYVLQCNAMEPILG-LFNSNKPSLI 232

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
             A W L+N+  G        +   A+P   KL+YS   +    A WA+  ++       
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIH 253
             V+    +   L +L       +   A   + N   G        ++   LPAL  L+ 
Sbjct: 293 QAVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           S  + +  +ACW +S ++ G  ++IQAVI+A + P L + L          A   + N  
Sbjct: 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411

Query: 314 TGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI-----------TAGN 359
           +G        + ++    +  L +LL     + I +     + NI               
Sbjct: 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNI 470

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
            E    + +A  +  +    +N    I ++A   I  
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  457 bits (1177), Expect = e-159
 Identities = 187/391 (47%), Positives = 241/391 (61%), Gaps = 7/391 (1%)

Query: 23  DEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV 82
             G   R   M E    K E         G  +      D+ +        ++  +V G+
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSN-QGTVNWSVEDIVKGI 66

Query: 83  WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142
            SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+AWALT
Sbjct: 67  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
           NIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV+  G 
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186

Query: 203 LVPLLAQLNG----QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD 257
           + PLLA L            LRN TWTLSN CR K P PP D V   LP L  L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GNIVTG D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
            QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   ++  LV 
Sbjct: 307 EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

Query: 378 LLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  177 bits (451), Expect = 7e-51
 Identities = 64/334 (19%), Positives = 125/334 (37%), Gaps = 15/334 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P  ++ + S  + +  +       + + + S   + VI+ G +   +  L   D   L 
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 135 FE----AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
                   W L+N+    +    +      +P  V+LL+    +V   + WA+  +    
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALA 249
               ++V+ +G  VP L +L G  +L ++  A   + N   G  +     +   AL    
Sbjct: 264 NERIEMVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+ +    +  +A W +S ++ G  D+IQ V+  G+ P L   L          A   +
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382

Query: 310 GNIVT-GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI------TAGNREQ 362
            N  + G   Q   ++    +  L+NLLS    K I +     +SNI           + 
Sbjct: 383 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKL 441

Query: 363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
              + E   +  + AL  +    + K +   I  
Sbjct: 442 SIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  151 bits (382), Expect = 5e-41
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 11/258 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP +V  +  ND  V  +       L +   +  IE V++ GVVP+ V+ LL      + 
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVK-LLGATELPIV 291

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
             A  A+ NI +GT E T+ VID GA+ +F  LL +P  +++++A W + NI        
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 351

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLI 252
             V++ G LVP L  +  +      + A W ++N+  G        +     +  L +L+
Sbjct: 352 QQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410

Query: 253 HSNDDEVLTDACWALSYL------SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306
            + D +++     A+S +         T      + E G   ++     H + SV   +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470

Query: 307 RTVGNIVTGDDMQTQCVI 324
             +    + ++ + Q V+
Sbjct: 471 NLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  104 bits (261), Expect = 1e-24
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 11/220 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + + +  +          +++       ++VI +G +  F   LL      +Q
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPS-LLTNPKTNIQ 333

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRC 193
            EA W ++NI +G  +  + V++HG VP  V +L       +++A WA+ N   G +   
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-------ALP 246
              ++  G + PL+  L+      +++     +SN  +   +    +           L 
Sbjct: 394 IVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
            +  L    ++ V   +   +        ++ Q V+    
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  443 bits (1142), Expect = e-154
 Identities = 208/352 (59%), Positives = 250/352 (71%), Gaps = 3/352 (0%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV 117
               +N    A        M+  ++S     Q   T +FRKLLS E +PPI+EVI + GV
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V RFVEFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+E
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QAVWALGNIAGDS  CRD VL    L PLL   + Q +L+M RNA W LSN CRGK P P
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F +VSP L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
               V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS + K+SIKKEACWT+SNIT
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNIT 304

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           AGNR QIQ VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIKY
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  165 bits (418), Expect = 2e-46
 Identities = 49/271 (18%), Positives = 109/271 (40%), Gaps = 8/271 (2%)

Query: 143 NIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIA--GDSPRCRDLVL 198
            +    ++   + +          +++++S S + +  A      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD 257
           + G +   +  L  +   ++   + W L+N   G          + A+P    L+ S  +
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGD 316
           +V   A WAL  ++  +      V++  + P L +     +  ++   A+  + N+  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV 376
               +       L  L  LL       +  +ACW +S ++ G  ++IQAVI+A +   LV
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIK 407
            LL + ++ +   A  A+ N  + G   Q +
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVT-GDDIQTQ 270

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  146 bits (369), Expect = 1e-39
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L V+   ++ +D+ V  +       L S   +  I+ VI +GV  R VE LL  +  ++ 
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRLVE-LLMHNDYKVV 251

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
             A  A+ NI +G    T+V+++  A+   + LL SP + ++++A W + NI   +    
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL 251
             V+       L++ L   + +    + A W ++N   G        +     +  L  L
Sbjct: 312 QTVIDANIFPALISILQTAEFRTR--KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369

Query: 252 IHSNDDEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           +   D +++  A   L  +             G N     + EA    ++     H +  
Sbjct: 370 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQE 429

Query: 301 V 301
           +
Sbjct: 430 I 430

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  300 bits (769), Expect = 3e-96
 Identities = 54/333 (16%), Positives = 110/333 (33%), Gaps = 9/333 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 115

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQAVIEAN 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E      AV    
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403
            +  +V LL         +A   +    +    
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  218 bits (557), Expect = 4e-65
 Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 14/337 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLI 252
             V   GGL  ++A LN +  +  L   T  L     G  +     +  S    AL +++
Sbjct: 134 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESK-LIILASGGPQALVNIM 191

Query: 253 HSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
            +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N
Sbjct: 192 RTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           +    D  T+       L  L+ LL  +   ++   A   +SN+T  N +    V +   
Sbjct: 251 L---SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306

Query: 372 IGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQI 406
           I  LV  +  A    DI + A  A+ + TS     ++
Sbjct: 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  212 bits (540), Expect = 1e-62
 Identities = 49/299 (16%), Positives = 110/299 (36%), Gaps = 9/299 (3%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 123

Query: 228 NFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +         +  L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 242

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405
              WT+ N++    +Q        ++G LV LL + + ++   AA  +SN T      +
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  208 bits (530), Expect = 3e-61
 Identities = 65/350 (18%), Positives = 121/350 (34%), Gaps = 14/350 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + S    V +   T    LL  +       V  +G + + V  LL +   +  
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVA-LLNKTNVKFL 157

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRC 193
                 L  +A G  E   +++  G     V ++ + +   +       L  ++  S   
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-N 216

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  ++  GG+  L   L   P   +++N  WTL N      +   + +   L  L  L+ 
Sbjct: 217 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 273

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGN 311
           S+D  V+T A   LS L+         V + G    L   ++       +  PA+  + +
Sbjct: 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333

Query: 312 IVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368
           + +      M    V  +  LP ++ LL          +A   +    A        + E
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALCPANHAPLRE 392

Query: 369 ANIIGPLVALLENAEFDIKKEAAWAISN-ATSGGTHEQIKYEHTFCTIFI 417
              I  LV LL  A  D ++  +   +      G   +   E     + I
Sbjct: 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  190 bits (483), Expect = 2e-54
 Identities = 59/359 (16%), Positives = 120/359 (33%), Gaps = 33/359 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL-HLTDPSQRLV 241

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP----ALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q +      LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 310 GNIVTGDDMQTQCVIEY---------------------QALPCLLNLLSGNYKKSIKKEA 348
                 + ++ + ++E                        +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 477

Query: 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407
              +  + A ++E  +A+       PL  LL +    +   AA  +   +     +  K
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  189 bits (481), Expect = 3e-54
 Identities = 40/257 (15%), Positives = 83/257 (32%), Gaps = 1/257 (0%)

Query: 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269
           +     +   R    TL N    +        S  +PAL  ++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
           L         AV  AG   ++   L   +   L      +  +  G+      ++     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389
             L+N++     + +       +  + +       A++EA  +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 390 AAWAISNATSGGTHEQI 406
             W + N +   T ++ 
Sbjct: 244 CLWTLRNLSDAATKQEG 260

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  124 bits (312), Expect = 5e-31
 Identities = 51/347 (14%), Positives = 91/347 (26%), Gaps = 73/347 (21%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383

Query: 191 PRCRDLVLSQGGLVPL---------------------LAQLNGQPKLSMLRNATWTLSNF 229
           P     +  QG +  L                        + G     ++   T  L   
Sbjct: 384 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 443

Query: 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
            R        +    +P    L++S  + +   A   L  L+    +  +A+   G    
Sbjct: 444 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAP 502

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
           L E L   +  V                                              A 
Sbjct: 503 LTELLHSRNEGV-------------------------------------------ATYAA 519

Query: 350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
             +  ++    +  +  +   +     +L         + A   +  
Sbjct: 520 AVLFRMSEDKPQDYKKRLSVEL---TSSLFRTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 92.3 bits (229), Expect = 3e-20
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N +  A +     P L + L      V+  A   V  +   +  +   +   Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
            +         +    T+ N+ + +RE + A+ ++  I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 395 SN 396
            N
Sbjct: 123 HN 124

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.8 bits (194), Expect = 6e-16
 Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 13/185 (7%)

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148
           +   CT     L     +     +     +P FV+ LL      +Q  AA  L  +A   
Sbjct: 432 IVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-D 487

Query: 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA 208
            E  + +   GA     +LL+S ++ V   A   L  ++ D P+     LS      L  
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547

Query: 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268
                   +    A   L    +G+P                  HS            + 
Sbjct: 548 --TEPMAWN--ETADLGLDIGAQGEPLG-----YRQDDPSYRSFHSGGYGQDALGMDPMM 598

Query: 269 YLSDG 273
               G
Sbjct: 599 EHEMG 603

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  295 bits (757), Expect = 1e-95
 Identities = 54/331 (16%), Positives = 110/331 (33%), Gaps = 9/331 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 118

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQAVIEAN 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E      AV    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGG 401
            +  +V LL         +A   +    +  
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  236 bits (604), Expect = 7e-73
 Identities = 74/335 (22%), Positives = 125/335 (37%), Gaps = 10/335 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V   GGL  ++A LN +  +  L   T  L     G  +     + S    AL +++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
              D  T+       L  L+ LL  +   ++   A   +SN+T  N +    V +   I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 374 PLVALLENA--EFDIKKEAAWAISNATSGGTHEQI 406
            LV  +  A    DI + A  A+ + TS     ++
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  212 bits (541), Expect = 1e-63
 Identities = 61/338 (18%), Positives = 117/338 (34%), Gaps = 15/338 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + S    V +   T    L  + +      V  +G + + V  LL +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFL 160

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRC 193
                 L  +A G  E   +++  G     V ++ + +   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  ++  GG+  L   L   P   +++N  WTL N      +   + +   L  L  L+ 
Sbjct: 220 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 276

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI--PALRTVGN 311
           S+D  V+T A   LS L+         V + G    L   ++       I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 312 IVTGDD---MQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQAVI 367
           + +      M    V  +  LP ++ LL   ++      +A   +    A        + 
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW--PLIKATVGLIRNLALCPANHAPLR 394

Query: 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405
           E   I  LV LL  A  D ++  +   +          
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  201 bits (512), Expect = 2e-59
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 4/267 (1%)

Query: 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259
              +  ++  +     +   R    TL N    +        S  +PAL  ++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
           L  A   L  L         AV  AG   ++   L   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379
              ++       L+N++     + +       +  + +       A++EA  +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 380 ENAEFDIKKEAAWAISNATSGGTHEQI 406
            +    + +   W + N +   T ++ 
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEG 263

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  192 bits (490), Expect = 3e-56
 Identities = 48/299 (16%), Positives = 110/299 (36%), Gaps = 9/299 (3%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + LL ++   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 126

Query: 228 NFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 245

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405
              WT+ N++    +Q        ++G LV LL + + ++   AA  +SN T      +
Sbjct: 246 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  186 bits (473), Expect = 1e-53
 Identities = 58/348 (16%), Positives = 116/348 (33%), Gaps = 33/348 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 310 GNIVTGDDMQTQCVIEY---------------------QALPCLLNLLSGNYKKSIKKEA 348
                 + ++ + ++E                        +P  + LL  +  ++I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 480

Query: 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
              +  + A ++E  +A+       PL  LL +    +   AA  +  
Sbjct: 481 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  120 bits (302), Expect = 8e-30
 Identities = 49/287 (17%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
           P     +  QG +  L+  L  +      R  +   +     +     + V     AL  
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           L     + +                     +      P   + L  P  ++   A   + 
Sbjct: 446 LARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNIT 356
            +    +   + +    A   L  LL S N    +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG--VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  269 bits (691), Expect = 2e-89
 Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V+  G L  L+  L+  P   +L+ A W LSN   G  +     + + ALPAL  L+ 
Sbjct: 132 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 314 T 314
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  209 bits (534), Expect = 9e-66
 Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
            LP +   ++S+D +    A    S +    N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQA 175

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  166 bits (423), Expect = 3e-49
 Identities = 80/206 (38%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLIHSN 255
              G  +P + Q      +    +AT   S             V  + ALPAL  L+ S 
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           ++++L +A WALS ++ G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
            + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQAVI+A  +  L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 376 VALLENAEFDIKKEAAWAISNATSGG 401
           V LL +    I +EA WA+SN  SGG
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGG 211

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  235 bits (601), Expect = 2e-74
 Identities = 55/333 (16%), Positives = 105/333 (31%), Gaps = 34/333 (10%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
            +          P +++              +          A   L  + S   EH   
Sbjct: 20  CETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDEEHRHA 68

Query: 155 VIDHGAVPIFVKLLYSPSD-----------DVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           + + G +    +LL    +            +R  A  AL N+       +  + S  G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL-IHSNDDEVL 260
           +  L          + +     L N            +    ++ AL    +    +  L
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 261 TDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-------ALRTVGNI 312
                AL  LS   T +K       G    L   L + S +  +         LR V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           +  ++   Q + E   L  LL  L  ++  +I   AC T+ N++A N +  +A+ +   +
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405
             L  L+ +    I   +A A+ N  +    + 
Sbjct: 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  188 bits (480), Expect = 1e-56
 Identities = 57/325 (17%), Positives = 105/325 (32%), Gaps = 27/325 (8%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--------- 125
           +      + +              KL   E       +   G +    E L         
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGL 91

Query: 126 -LREDYPQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWAL 183
                   L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L
Sbjct: 92  TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151

Query: 184 GNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQ 240
            N++       +  +   G +  L+       K S L++    L N        +     
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211

Query: 241 VSPALPALAHLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEF 293
           V  AL  L   +     +N   ++      L  +S       D  Q + E      L + 
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L   S +++  A  T+ N+   +    + + +  A+  L NL+     K I   +   + 
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALR 330

Query: 354 NITAGNREQIQAVIEANIIGPLVAL 378
           N+ A    + +    ANI+ P  +L
Sbjct: 331 NLMANRPAKYKD---ANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =   99 bits (249), Expect = 1e-23
 Identities = 35/235 (14%), Positives = 66/235 (28%), Gaps = 18/235 (7%)

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           L  I      C +   +    +         P    +  A   L      +         
Sbjct: 13  LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL 72

Query: 243 PALPALAHLIHS-----------NDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRL 290
             L A+A L+                 +   A  AL+ L+ G       +    G    L
Sbjct: 73  GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 132

Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNYKKSIKKEAC 349
              L   S  +       + N+    D+ ++  + E  ++  L+       K+S  K   
Sbjct: 133 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192

Query: 350 WTVSNITAGNRE-QIQAVIEANIIGPLVALL----ENAEFDIKKEAAWAISNATS 399
             + N++A   E +         +  LV  L    +     I +     + N +S
Sbjct: 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 24/206 (11%)

Query: 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
           L  +R    T   +             P +    + + +  +  +  A   L  LS    
Sbjct: 13  LEQIRAYCETCWEWQEAH--------EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 276 DKIQAVIEAGVFPRLAEFL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324
            +  A+ E G    +AE L            H S ++   A   + N+  GD      + 
Sbjct: 65  HR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 325 EYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENA 382
             +  +  L+  L     + +++     + N++       +  + E   +  L+      
Sbjct: 124 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182

Query: 383 EF-DIKKEAAWAISNATSGGTHEQIK 407
           +     K    A+ N ++  T  +  
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKAD 208

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  241 bits (615), Expect = 2e-72
 Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 10/335 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              +  L N++    E    +   G +P  V +L SP D V   A+  L N+       +
Sbjct: 211 RCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V   GGL  ++A LN +  +  L   T  L     G  +     + S    AL +++ 
Sbjct: 270 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 328

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 387

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
              D  T+       L  L+ LL  +   ++   A   +SN+T  N +    V +   I 
Sbjct: 388 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444

Query: 374 PLVALLENA--EFDIKKEAAWAISNATSGGTHEQI 406
            LV  +  A    DI + A  A+ + TS     ++
Sbjct: 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM 479

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  231 bits (591), Expect = 5e-69
 Identities = 56/348 (16%), Positives = 109/348 (31%), Gaps = 8/348 (2%)

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +DV+     +  +            D   QY  T   R      R+    E +  G+   
Sbjct: 55  DDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIP 109

Query: 121 FVEFLLREDYP-QLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             +F        Q   E +  L +       +     +   A+P   KLL      V  +
Sbjct: 110 STQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK 169

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   +  ++        ++ S   +  ++  +     +   R  + TL N    +     
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
              S  +PAL +++ S  D VL  A   L  L         AV  AG   ++   L   +
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              L      +  +  G+      ++       L+N++   Y           V  + + 
Sbjct: 290 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR-TYTYEKLLWTTSRVLKVLSV 348

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
                 A++EA  +  L   L +    + +   W + N +   T ++ 
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 396

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  211 bits (538), Expect = 2e-61
 Identities = 60/339 (17%), Positives = 117/339 (34%), Gaps = 13/339 (3%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + S    V +   T    L  + +      V  +G + + V  LL +   +  
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFL 293

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD-VREQAVWALGNIAGDSPRC 193
                 L  +A G  E   +++  G     V ++ + + + +       L  ++      
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  ++  GG+  L   L   P   +++N  WTL N      +   + +   L  L  L+ 
Sbjct: 353 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLG 409

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGN 311
           S+D  V+T A   LS L+         V + G    L   ++       +  PA+  + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 312 IVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368
           + +      M    V  +  LP ++ LL          +A   +    A        + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLRE 528

Query: 369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407
              I  LV LL  A  D ++  +   +           +
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 567

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  204 bits (521), Expect = 4e-59
 Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 33/359 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 377

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 310 GNIVTGDDMQT---------------------QCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                 + ++                        +     +P  + LL  +  ++I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 613

Query: 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407
              +  + A ++E  +A+       PL  LL +    +   AA  +   +     +  K
Sbjct: 614 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  148 bits (374), Expect = 5e-39
 Identities = 43/357 (12%), Positives = 101/357 (28%), Gaps = 35/357 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +   +      +   C    R L         ++    G++   V+ LL  D   + 
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQ-LLGSDDINVV 416

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIA---GD 189
             AA  L+N+     ++  +V   G +   V+ +      +D+ E A+ AL ++     D
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALA 249
           +   ++ V    GL  ++  L+      +++     + N           +   A+P L 
Sbjct: 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 536

Query: 250 HLIHSNDDEVLTDACWALSYLSDG---------------------TNDKIQAVIEAGVFP 288
            L+     +         +                                 +      P
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKE 347
              + L  P  ++   A   +  +    +   + +    A   L  LL S N    +   
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQDKE-AAEAIEAEGATAPLTELLHSRNEG--VATY 653

Query: 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404
           A   +  ++    +  +  +   +   L         +         +     G  +
Sbjct: 654 AAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQ 710

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  221 bits (566), Expect = 4e-71
 Identities = 70/169 (41%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
                LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+ 
Sbjct: 9   HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE 68

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
            +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G 
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
            EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + 
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQA 175

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  180 bits (460), Expect = 3e-55
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL 
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SP++ + ++A+WAL NIA         V+  G L  L+  L+  P   +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 230 CRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288
             G  +     +   ALPAL  L+ S ++++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVT 314
           +L +   H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  170 bits (432), Expect = 5e-51
 Identities = 77/245 (31%), Positives = 110/245 (44%), Gaps = 43/245 (17%)

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                 +P  V+ L SP     + A+  L  IA         V+  G             
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG------------- 54

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274
                                        ALPAL  L+ S ++++L +A WALS ++ G 
Sbjct: 55  -----------------------------ALPALVQLLSSPNEQILQEALWALSNIASGG 85

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
           LLS +  + I +EA W +SNI +G  EQ QAV EA  +  L  L  +    I+KEA  A+
Sbjct: 146 LLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

Query: 395 SNATS 399
               S
Sbjct: 205 EKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
           R         + +  +V  L + +    + A   +S   SGG
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG 43

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  202 bits (514), Expect = 2e-60
 Identities = 60/298 (20%), Positives = 104/298 (34%), Gaps = 26/298 (8%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDD 174
           +          A   L  + S   EH   + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 175 VREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           +R  A  AL N+  GD      L   +G +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA 274

Query: 234 PQPPFDQV--SPALPALAHL-IHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPR 289
                  +    ++ AL    +    +  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 290 LAEFLMHPSPSVLIP-------ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342
           L   L + S +  +         LR V +++  ++   Q + E   L  LL  L  ++  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSL 393

Query: 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           +I   AC T+ N++A N +  +A+ +   +  L  L+ +    I   +A A+ N  + 
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  186 bits (474), Expect = 1e-54
 Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 43/369 (11%)

Query: 18  VAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPV 77
           +    D+ R RRE  ++ + +  R         +                          
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-----------------DQ 152

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL----------LR 127
               + +              KL   E       +   G +    E L            
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTND 210

Query: 128 EDYPQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
                L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L N+
Sbjct: 211 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270

Query: 187 AGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGKPQPPFDQVS 242
           +       +  +   G +  L+       K S L++     W LS  C    +     V 
Sbjct: 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVD 329

Query: 243 PALPALAHLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLM 295
            AL  L   +     +N   ++      L  +S       D  Q + E      L + L 
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
             S +++  A  T+ N+   +    + + +  A+  L NL+     K I   +   + N+
Sbjct: 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNL 448

Query: 356 TAGNREQIQ 364
            A    + +
Sbjct: 449 MANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  168 bits (428), Expect = 5e-48
 Identities = 65/406 (16%), Positives = 138/406 (33%), Gaps = 64/406 (15%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-S 115
              ++         K+E +  +++ + ++D   + + +   R LL++  S      +R S
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQS 69

Query: 116 GVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164
           G +P  ++ L   D             + +  A+ AL NI     +  +   +   + + 
Sbjct: 70  GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 165 VKL------------------------LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
            ++                        + +P +     AV  L  ++ D    R  +   
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL 188

Query: 201 GGLVPLLAQL----------NGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPAL 248
           GGL  +   L          N    +++ R A   L+N   G    +     +   + AL
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPS-PSVLIPAL 306
              + S  +++       L  LS   +   +  + E G    L E  +     S L   L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 307 RTVGNI-VTGDDMQTQCVIEYQALPCLLNLLSGNYKKS---IKKEACWTVSNIT---AGN 359
             + N+     + +        AL  L+  L+   + +   I +     + N++   A N
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405
            +  Q + E N +  L+  L++    I   A   + N ++    +Q
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ 414

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  189 bits (480), Expect = 1e-55
 Identities = 51/314 (16%), Positives = 100/314 (31%), Gaps = 32/314 (10%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V+  L     + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQ-YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + ++ ALP LA  +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341
             +G+   L  ++ +   +           +    ++  +   E       L   + N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 342 KSIKKEACWTVSNITAGNREQIQA-------------VIEANIIGPLVALLENAEFDIKK 388
                  C++  +    N                   +  ++ I   + L+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 389 EAA-WAISNATSGG 401
           EA   A+ N T+  
Sbjct: 302 EACAGALQNLTASK 315

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  111 bits (279), Expect = 4e-27
 Identities = 46/308 (14%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL------ 168
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQPKLSMLR 220
               D   E  +  L N++            Q       A            +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-- 277
           N    L       K              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 ---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKSIKKE-----ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-IKK 388
           LL+ +   +   E     AC+TV N+ A   +  +    ++++  ++ L  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 389 EAAWAISN 396
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 95.3 bits (236), Expect = 1e-21
 Identities = 55/369 (14%), Positives = 107/369 (28%), Gaps = 58/369 (15%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + S +  VQ       R  L    +    E  R   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K  +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFCRG 232
           A   L N++      R  + +  GL+  L           +     + N    L N    
Sbjct: 163 ATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
                  +V      L +   +   E  +  C++        N+    + E    P+ + 
Sbjct: 222 LDA----EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277

Query: 293 FLMHPSPSVLIPAL-------------------RTVGNIVTGDDMQTQCVIEYQALPCLL 333
           +L H         L                    T    +    M     ++ + LP + 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EFDIK 387
            LL       + +     +SN++      +  V+   +   +  LL +         DI 
Sbjct: 338 RLLQSGNSD-VVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394

Query: 388 KEAAWAISN 396
             A + + N
Sbjct: 395 SSACYTVRN 403

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.9 bits (196), Expect = 2e-16
 Identities = 24/175 (13%), Positives = 60/175 (34%), Gaps = 18/175 (10%)

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
             +P     + S D++      + + +         Q V + G   +L + L  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
             A   + N+V               +   ++LL       I+K+    + N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 363 IQAVIEANIIGPLVALL----------------ENAEFDIKKEAAWAISNATSGG 401
           ++  + A+ +  L   +                E  + ++   A   + N +S  
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD 174

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 77.2 bits (189), Expect = 2e-15
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 35/326 (10%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
             LA+ V  P +     N  +        D  V +  T   R L S   +        SG
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSRE---VVDPEVFFNATGCLRNL-SSADAGRQTMRNYSG 185

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++   +   ++      + +       +    +   ++  +       +    + +    
Sbjct: 186 LIDSLMA-YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYNARNAYTE 243

Query: 177 EQAVWALGNIAGD---------------SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           + +     N +                 +P+    +     +   L  +    K + L  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 222 ATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
               L N    K                 LP +A L+ S + +V+      LS +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 276 DKIQAVIEAGVFPRLAEFL------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
             +  V+   VFP +   L         S  +L  A  TV N++       +       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNI 355
             ++NL   +      + A   +S++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 71.8 bits (175), Expect = 8e-14
 Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 19/217 (8%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318
              A  AL  L   +                   L    +  +       + N+ + D++
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 319 QTQCVIEYQALPCLLNLLSGNYK---------------KSIKKEACWTVSNITAGNREQI 363
           +    +   ALP L + +   +                  +   A   + N+++ +  + 
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
                + +I  L+A ++N     + +     +     
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 65.6 bits (159), Expect = 8e-12
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS 170
             ++   +P+    LL+     +    A  L+N++         V+ +   P   +LL S
Sbjct: 326 IGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382

Query: 171 ------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224
                  S+D+   A + + N+    P+      S   L  ++              A  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 225 TLSNFCRGKP 234
            LS+    K 
Sbjct: 443 LLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388
           +P  +  LS   +   +    + + +    +    Q V +   I  LV LL +   ++++
Sbjct: 4   IPKAVQYLSSQDE-KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 389 EAAWAISNATSGGTHEQIKY 408
            AA A+ N     T  +++ 
Sbjct: 63  AAAGALRNLVFRSTTNKLET 82

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  179 bits (454), Expect = 7e-51
 Identities = 59/352 (16%), Positives = 114/352 (32%), Gaps = 57/352 (16%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L S+ +  P     R   +P  +  +L      ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            +P+ V LL  P  +V   A  AL NI+ G     +  + +  G+  L+  L     + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------HSNDDEVL 260
               T TL N          + V  AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV----------- 309
           T+    L  +S   ++  + + E         F++           + V           
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 310 ---------------------GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                                 N  T      + + + + +   ++LL  +   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 349 CWTVSNITAGNR---EQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISN 396
              + N+ AG       I++ + +   +  +  LL N    + K A+ A+ N
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  106 bits (264), Expect = 7e-25
 Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 70/387 (18%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQL 133
           +PV+V  +      V        +  +S  R       +     VP  V  L +     L
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP------------------SDDV 175
                  L N++S   +  K+ I   A+      +  P                   + V
Sbjct: 151 TEVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208

Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNF 229
                  L N++ +    R  +    GLV  L  +             ++ N    L N 
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268

Query: 230 CR---------------------------GKPQPPFDQVSPALPALAHLIHSNDDEVLTD 262
                                         +      Q       ++ L  S    +L  
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328

Query: 263 ACWALSYLSDGT----NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318
           +  A+  L  G          A+ +      +A+ L +    V+  A   + N+      
Sbjct: 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-- 386

Query: 319 QTQCVIEYQALPCLLNLLSGNYKKSIKK-------EACWTVSNITAGNREQIQAVIEANI 371
           + + +I   A+P L+  L G  + S              T++ + A N E  + + E   
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446

Query: 372 IGPLVALLENAEFDIK--KEAAWAISN 396
           I  LV + ++     K  + AA  +  
Sbjct: 447 IEKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 98.1 bits (243), Expect = 3e-22
 Identities = 49/323 (15%), Positives = 100/323 (30%), Gaps = 56/323 (17%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPAL 248
            + +  V    G+  L+  L+  PK  +   A   L N   G+ Q     +     +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 249 AHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL----- 302
             L+  + D ++       L  LS   + K++ V  A     L + ++ P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 303 ------------------------------IPALRTVGNIV---------TGDDMQTQCV 323
                                            LR    +V               +   
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 324 IEYQALPCLLNLLSGNYKKS-----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL 378
           +    +  L NL    +++       ++ A    +N         + + +  ++   ++L
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 379 LENAE-FDIKKEAAWAISNATSG 400
           L+ ++   I + +A AI N  +G
Sbjct: 317 LKESKTPAILEASAGAIQNLCAG 339

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  164 bits (417), Expect = 5e-48
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 3/236 (1%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           S  +P       +    Q +  A   L ++              G   +  + L + +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
           +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A + +S   R + 
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 235 QPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                         L   +     ++   + + L  L  G  +    +   G+  +L   
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
           +           L  + ++VT      +     +    L  LL    +   + E  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  101 bits (253), Expect = 2e-24
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 15/205 (7%)

Query: 202 GLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL 260
           GLVP  + + GQ   +  +++    LS               P  P       + D +  
Sbjct: 12  GLVPRGSHMRGQRGEVEQMKSCLRVLSQ--------------PMPPTAGEAEQAADQQER 57

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
             A   L+ L +  ++       +G+   +  +L   +  +   A + +G          
Sbjct: 58  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 117

Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + V+   AL  LL LL  +   +++ +A + +S +       +   +  +    L+  ++
Sbjct: 118 EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177

Query: 381 NAEFDIKKEAAWAISNATSGGTHEQ 405
                +K ++A+ + N   G    +
Sbjct: 178 QQVQKLKVKSAFLLQNLLVGHPEHK 202

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 97.8 bits (243), Expect = 3e-23
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 2/160 (1%)

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH- 296
           F Q+S     +   + +    +   A   +   S       + V+  G   +L   L   
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
              +V + AL  +  +V   +      +       L+  +    +K +K ++ + + N+ 
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK-LKVKSAFLLQNLL 195

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
            G+ E    +    ++  LVAL+        +    A+ +
Sbjct: 196 VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS 235

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 5/237 (2%)

Query: 30  EDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV-WSNDSG 88
              M        + + Q++R   L+    L  +++      +L  + ++V     +  +G
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 89  VQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +++                 I E+V+  G + + +  L R+    ++ +A +A++ +   
Sbjct: 98  LRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
                   +      + ++ +      ++ ++ + L N+    P  +  + S  G+V  L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQL 214

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264
             L          +    L +     PQ   +   P L     L H        +  
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  163 bits (412), Expect = 4e-44
 Identities = 52/374 (13%), Positives = 115/374 (30%), Gaps = 42/374 (11%)

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
             G A KL             D  ++          L+++     + +     +   ++ 
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMD- 428

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHT-------------------------------- 152
           L R       +       N+ +   +                                  
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
            V+ + G       L  + S + +E     L  + G     R  V+ +GG+  LL     
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE 547

Query: 213 QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSP--ALPALAHLIHSNDDEVLT-DACWALS 268
             +    R+AT  L+       P+  F        +  L +L+  +   +   ++  AL+
Sbjct: 548 GTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328
            L+       Q +I+     ++  +LM     +   A + + N+V  +D+          
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666

Query: 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIK 387
           +  L  L      +         ++ IT+ + +  + ++  A+ +  L  L+ N    ++
Sbjct: 667 VKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725

Query: 388 KEAAWAISNATSGG 401
                 I N  + G
Sbjct: 726 HRGIVIILNMINAG 739

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  138 bits (347), Expect = 1e-35
 Identities = 45/351 (12%), Positives = 97/351 (27%), Gaps = 47/351 (13%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TKVV 155
             ++         +       +  +++  L     + +     A+T + +G  +   +VV
Sbjct: 228 LARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVV 286

Query: 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215
              G + + + +  +  +  +  A   L   +         +  QG  V +L +L     
Sbjct: 287 AREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDILKRLYHSKN 343

Query: 216 LSMLRNATWTLSNFC-----RGKPQPPFDQVSPALPALAH---LIHSNDDEVLTDACWAL 267
             +   A   L             +P  D  +  L        +    D ++   A   L
Sbjct: 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL 403

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT------- 320
           +YL+     K + + +      L +     + S L   + T  N+    + Q        
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 321 -------------------------QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                                      +        L  L       S  +E    V N 
Sbjct: 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS--QELIARVLNA 521

Query: 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
             G +E    V++   +  L+ +        K+ A  A++        E  
Sbjct: 522 VCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  136 bits (342), Expect = 7e-35
 Identities = 62/407 (15%), Positives = 123/407 (30%), Gaps = 28/407 (6%)

Query: 14  NKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLE 73
            +    +  DE + R  D + E  K+K      + +         L N     G      
Sbjct: 229 ARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAR 288

Query: 74  N--LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP 131
              L +++A   ++D   Q         L++        + +    V   ++ L      
Sbjct: 289 EGILQMILAMATTDDELQQRVAC---ECLIAASSKKDKAKALCEQGVD-ILKRLYHSKND 344

Query: 132 QLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLL------YSPSDDVREQAVWALG 184
            ++  A   L  + S   +   +     GA     +             D+R  A   L 
Sbjct: 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
            +  D   C++ ++     +  L  L      S L     T  N C    +         
Sbjct: 405 YLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           L   A      + E+            D  N +I  +   G+   L       S +    
Sbjct: 464 LAKFAKQHIPEEHELDDV---------DFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN--ITAGNREQ 362
             R +  +    +++ + V++   +  LL +     +K  K+ A   ++   IT      
Sbjct: 515 IARVLNAVCGLKELRGK-VVQEGGVKALLRMALEGTEK-GKRHATQALARIGITINPEVS 572

Query: 363 IQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKY 408
                  ++I PL+ LL+         E+  A++N  S     + + 
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRI 619

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  132 bits (332), Expect = 1e-33
 Identities = 39/291 (13%), Positives = 82/291 (28%), Gaps = 5/291 (1%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           I  +   G+       L + +    Q   A  L  +  G  E    V+  G V   +++ 
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545

Query: 169 YSPSDDVREQAVWALGNIA--GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
              ++  +  A  AL  I    +         S   + PLL  L           +   L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 227 SNFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285
           +N            +    +  + + +  +   +   A   L  L    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
               LA                 +  I +      + ++   +   +L+ L  N   +++
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725

Query: 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
                 + N+     E  + + E +I+  L  L +  +    K    A   
Sbjct: 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  114 bits (287), Expect = 1e-27
 Identities = 33/230 (14%), Positives = 65/230 (28%), Gaps = 4/230 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLL-SIERSPPIEEVIRSGVVPRFVEFLLREDYPQL 133
           +  ++          +   T    ++  +I             V+   +  L ++     
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
            FE+  ALTN+AS      + +I    V      L      +   A   L N+   S   
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDV 656

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHL 251
             +       V  LA L               L+       +     ++ A  L  L  L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           I +    V       +  + +   +  + + E  +   L+     P  + 
Sbjct: 717 IANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 91.1 bits (225), Expect = 8e-20
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              +   +E       L S+  +  + + I        +E+ L ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           +            ++  V     L     ++       AL  I   S +C + +L+    
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTD 262
           + +L  L   P  ++       + N      +          +  L+ L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  138 bits (348), Expect = 1e-38
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
                AL N+  +    +  V    G+  LL  L     L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 237 PFDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 280
               ++ AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 281 VIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +    G+   L  ++            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 78.5 bits (193), Expect = 8e-17
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 16/178 (8%)

Query: 240 QVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
            +   L     ++ ++      ++ A   + +     ++  + V +     +L + L   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  V       + N+V  D+     V E   +P LL +L        KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 358 GNREQIQAVIEA------NIIGPLVALLEN--------AEFDIKKEAAWAISNATSGG 401
            ++ +   + EA      NII P     E          +FDI       + N +S G
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 61.1 bits (148), Expect = 5e-11
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  ++  +   +  VQ       R  L  E +    EV     VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFC 230
               L N++      R  +    GL+  L         + QP      N    L N  
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 88.2 bits (218), Expect = 4e-20
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++ +    L + +   L  E A A   +A    E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
               +AL  IA  +P     ++     + +L+  N + KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F  V+P LP + +L+H  D+ V   A  AL +L+   +   + VI      +  E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 297 PSPSVLIPALRTVGNIV 313
            S  V       +  ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 71.3 bits (174), Expect = 3e-14
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           V+ + +E LL +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIE-LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
           ++   A G +A + P           ++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
               ++  +     ++ S + E    A   +  + + +   +   +     PR+   L  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIE 325
               V   A+  + ++ T +D   + VI+
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK 221

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 62/237 (26%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +   ++LL      V + A+  +  IA       + +L +     L + L     + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKK-----LFSLLKKSEAIPLT 87

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           +          + KP    + V   +P L       D++   +  +AL  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
           +++           L   +                                         
Sbjct: 144 SIVRD-----FMSMLSSKNRED-------------------------------------- 160

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
                K  A   +  +   + + +   +       ++ LL + +  ++  A  A+ +
Sbjct: 161 -----KLTALNFIEAMGENSFKYVNPFLPR-----IINLLHDGDEIVRASAVEALVH 207

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 71.4 bits (175), Expect = 4e-14
 Identities = 39/317 (12%), Positives = 83/317 (26%), Gaps = 75/317 (23%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L +  +    +E+ R          LL +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
           AV + ++     +   R+   + LG I     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
                   P L   L  P+  V   A   +      +              C + +L   
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEA--------------------NIIGPLVALL 379
             + ++ EA   +S     ++  +  + +                      ++  L  +L
Sbjct: 205 N-EEVRIEAIIGLSYR--KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTML 261

Query: 380 ENAE-FDIKKEAAWAIS 395
              +  +I   A   + 
Sbjct: 262 YKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 25/228 (10%), Positives = 61/228 (26%), Gaps = 42/228 (18%)

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
             + +A    G                      L +L          ++   L    RG 
Sbjct: 5   YQKRKASKEYGLYNQCKKLN----------DDELFRLLDDHNSLKRISSARVLQL--RGG 52

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                     A+          +        + L  +        +   +          
Sbjct: 53  QD--------AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L   S  V   A+ +       + + +  ++E         + + +   ++++   + +S
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRATAFAIS 153

Query: 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
            I   ++  I           L+ LL++   D++  AA+AI+      
Sbjct: 154 VI--NDKATIP---------LLINLLKDPNGDVRNWAAFAININKYDN 190

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 11 SRRNKYK-VAVDADEGRRRREDNMVEIRKNKREESLQKKRR 50
          +R +++K    D+ E RRRR +  VE+RK K+++ + K+R 
Sbjct: 2  ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 46/249 (18%), Positives = 70/249 (28%), Gaps = 56/249 (22%)

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216
           D   V +++K L   S  VR  A +ALG I  +              V  L +       
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA------------VEPLIKALKDEDA 64

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276
            + R A   L                 A+  L   +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
                        L + L      V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
                  +++ A   +  I  G            +   +  L E      +K A   +  
Sbjct: 153 KDED-GWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYLET 200

Query: 397 ATSGGTHEQ 405
             S   H  
Sbjct: 201 HKSFNHHHH 209

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 67.1 bits (163), Expect = 4e-12
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 50/342 (14%)

Query: 111 EVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP----LLAQLNGQPKLSMLRNAT 223
           +   S  V+E   W +G IA       + +  Q  L       L  L   PK++   N +
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCS 474

Query: 224 WTLSNFCRGKPQPPFDQVSPALPA-LAHLIHS-----NDDEVLTDACWALSYLSDGTNDK 277
           WT+ N      +     +    PA +  LI +     N+      A  AL+ + +   D 
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534

Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL----- 332
           +     + +   + + L           +    N +T +D Q+   ++   L  L     
Sbjct: 535 VAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585

Query: 333 -----------------LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
                              LL       I+ +  + +S + A   +  +  +E      L
Sbjct: 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYL 644

Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIFI 417
           +  L   +  +   A   I++ ++    +  +Y      +  
Sbjct: 645 LKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLA 686

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 44/235 (18%), Positives = 67/235 (28%), Gaps = 56/235 (23%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            V +++K L   S  VR  A +ALG I     R           V  L +        + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIG--DERA----------VEPLIKALKDEDAWVR 62

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           R A   L                 A+  L   +   D  V   A  AL  + D       
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------- 105

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
                     L + L      V I A   +G I  GD+         +A+  L+  L   
Sbjct: 106 ----ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKALKDE 150

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
               +++ A   +  I  G            +   +  L E      +K A   +
Sbjct: 151 DG-WVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 53/219 (24%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---------------- 116
           E + + +  +  +   V+        K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 117 ---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               V   ++  L+++   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIK-ALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
            VR  A +ALG I  +              V  L +        + ++A   L       
Sbjct: 122 FVRIAAAFALGEIGDERA------------VEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
                        A+  L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 56/219 (25%)

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +      +     P            V +  +        + R A + L     GK    
Sbjct: 2   RGSHHHHHHT--DPE----------KVEMYIKNLQDDSYYVRRAAAYAL-----GKIGDE 44

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A  AL  + D                 L + L   
Sbjct: 45  -----RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDE 88

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI-- 134

Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
           G+            + PL+  L++ +  +++ AA A+  
Sbjct: 135 GDER---------AVEPLIKALKDEDGWVRQSAADALGE 164

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.3 bits (148), Expect = 3e-10
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 24/309 (7%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +  V R  ++P  +  L   L      ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225
           + L      VR    W L   A            +  +  LL ++    K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEA 284
            +             ++  L  L         + L     A+  L+D   +   +     
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525

Query: 285 GVFPRLAEFL--MHPSPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNY 340
            + P L +    +      L P L  + ++ T         C   YQ    L+       
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585

Query: 341 K-------------KSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDI 386
                         K     A   +S +  G    I+ ++  +NI+  +   +++   ++
Sbjct: 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645

Query: 387 KKEAAWAIS 395
           ++ +   + 
Sbjct: 646 RQSSFALLG 654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 36/275 (13%), Positives = 75/275 (27%), Gaps = 23/275 (8%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQLNGQPKL--- 216
           +P+ V  +     D+        G   GD       +       + +LA +     L   
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI 360

Query: 217 -----SMLRNATW--------TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA 263
                 +L +  W         L     G  Q     +   +P L   +      V +  
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420

Query: 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323
           CW LS  +     +        +   L + ++  +  V   A      +    +     +
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACTEL 477

Query: 324 IEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381
           + Y    L  L+   S  Y+          +  +       +       ++ P +    N
Sbjct: 478 VPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 536

Query: 382 AEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIF 416
              D  K+    +   +S  T  Q  +      ++
Sbjct: 537 MLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVY 571

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 61.0 bits (147), Expect = 4e-10
 Identities = 39/267 (14%), Positives = 88/267 (32%), Gaps = 52/267 (19%)

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
           K ++    +    + +++ S + ++Q V  + NI          +  QG +  +L  L  
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLAN 509

Query: 213 QPKLS--MLRNATWTLSNFCRG-KPQPPFDQVSP--ALPALAHLIHSNDDEVLT------ 261
           +  +   +       L+       P   F + S   A+P L  L+  +            
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569

Query: 262 --------DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
                   +A  AL+ L+       + V +  V  ++                 T+ N++
Sbjct: 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY--------------WSTIENLM 615

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
             +++  Q       L  + N++S     + K      + N  +     I          
Sbjct: 616 LDENVPLQR----STLELISNMMSHPLTIAAKFFN---LENPQSLRNFNI---------- 658

Query: 374 PLVALLENAEFDIKKEAAWAISNATSG 400
            LV LL+ ++ + ++  A   +N  + 
Sbjct: 659 -LVKLLQLSDVESQRAVAAIFANIATT 684

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 42/285 (14%), Positives = 84/285 (29%), Gaps = 25/285 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           I+E +R+ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
           +        E +V AL  ++  +     +  ++     LL  +  Q     L      ++
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402

Query: 228 NFCRGKPQPPFDQVSPALPALAHLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
           N      +                           E             D      + ++
Sbjct: 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYIL 454

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN- 339
              +   L   + + SP+     +R + NI    +   Q     Q  A+  +L  L+   
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA---QQGAVKIILEYLANKQ 511

Query: 340 -YKKSIKKEACWTVSN--ITAGNREQIQAVIEANIIGPLVALLEN 381
              + I+   C  ++   I        +     N I  L  LL  
Sbjct: 512 DIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPR 556

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 90  QYECTTQFRKLLSIERSPPIEEVIRSGVVPRF---VEFLLREDYPQLQFEAAWALTNIAS 146
            YE       L S E S   E          +   +E L+ ++   LQ      ++N+ S
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 147 GTSEHTKVVIDHG------AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
                     +           I VKLL     + +        NIA   P     +L++
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 201 GGLVPLLAQL 210
             L+    Q+
Sbjct: 696 KELIENAIQV 705

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 59.0 bits (141), Expect = 2e-09
 Identities = 37/330 (11%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLS----IERSPPIEEVIRSGVVPRFVEFLLREDY 130
           +  +   + S+   ++   +   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             +Q EA   + ++ S              +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             C ++V     +  LL++L+    +S  R     ++   R       + +   +P +  
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             + +DDE+      A          ++   +   +             ++ +  L    
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII-------------NICLKYLTYDP 309

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS------IKKEACWTVSNITAGNREQIQ 364
           N    D+ + +  ++              Y         +++ A   +  + +   E + 
Sbjct: 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAI 394
              +  +   L++  +  E ++K +   A 
Sbjct: 370 EFYK-TVSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 123  EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            +         ++  A  +L  +        ++ +      + ++   SPS++V+  A +A
Sbjct: 824  DVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYA 879

Query: 183  LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGKPQPPFDQV 241
            LG+I+  +            L  +L ++  QPK   +L ++   + +        P+  V
Sbjct: 880  LGSISVGNLPEY--------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--V 929

Query: 242  SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
                  L       ++         L         K+  +    + PRL  +L+  S   
Sbjct: 930  ENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYA 981

Query: 302  LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                +  V   ++ D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 982  RSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSA 1033

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 5e-09
 Identities = 54/337 (16%), Positives = 102/337 (30%), Gaps = 93/337 (27%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS---GTSEH 151
           +   +L     S          +V +FVE +LR +Y        + ++ I +     S  
Sbjct: 62  SGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMM 108

Query: 152 TKVVID-----HGAVPIFVKLLYSPSDDV-REQAVWALGN-IAGDSPRCRDLVL-SQGG- 202
           T++ I+     +    +F K       +V R Q    L   +    P  +++++    G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA-KNVLIDGVLGS 161

Query: 203 ----LVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
               +   +   + + +  M     W  L N C   P    + V   L  L + I  N  
Sbjct: 162 GKTWVALDVCL-SYKVQCKMDFKIFWLNLKN-CN-SP----ETVLEMLQKLLYQIDPNWT 214

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGD 316
                        SD +   I+  I + +   L   L      + L+        ++   
Sbjct: 215 S-----------RSDHS-SNIKLRIHS-IQAELRRLLKSKPYENCLL--------VL--L 251

Query: 317 DMQTQCVIEYQALPC--LL--------NLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366
           ++Q         L C  LL        + LS      I  +       +T    + +   
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH--HSMTLTPDEVKSLLLK 309

Query: 367 I----------EANIIGPL-VALLENAEFDIKKEAAW 392
                      E     P  ++++  AE      A W
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATW 344

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 66/378 (17%), Positives = 108/378 (28%), Gaps = 128/378 (33%)

Query: 2   SLRPNSKADSR-RNKYKVAVDADEGRRRREDNMVEIRKN-KREESLQKKRREGLQNQQP- 58
            ++   +  S     Y    D     R   DN V  + N  R +    K R+ L   +P 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPA 150

Query: 59  ---------------LANDVNAPGTAKKLENLPVMVAGV-WSNDSGVQYECTT------Q 96
                          +A DV         +    M   + W N       C +       
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEM 201

Query: 97  FRKLLS---------IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
            +KLL           + S  I+  I S +       L  + Y          L      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN-------CL------ 247

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPL 206
                 +V+                 +V+    W   N+      C+ L+ ++   +   
Sbjct: 248 ------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF 280

Query: 207 LAQLNGQPKLSMLRNATWT-------LSNFCRGKPQ--PP-FDQVSP-ALPALAHLIHSN 255
           L+            + T T       L  +   +PQ  P      +P  L  +A  I   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGV-----------FPRLAEFLMHPSPSVLIP 304
            D + T   W          DK+  +IE+ +           F RL+ F   P PS  IP
Sbjct: 339 -DGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P-PSAHIP 388

Query: 305 A--LRTV-GNIVTGDDMQ 319
              L  +  +++  D M 
Sbjct: 389 TILLSLIWFDVIKSDVMV 406

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 26/239 (10%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQG--GLVPLLAQLNGQPKL 216
           A+ + ++L     +  R +A  ALG I   +    R +VL +     +  L+Q N +  +
Sbjct: 34  ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV---LTDACWALSYLSDG 273
             LR   + + +   G           A   L  L+ S DD +     D    L  L D 
Sbjct: 94  KALRALGYLVKDVPMGS-----KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS 148

Query: 274 --TNDKIQAVIEAGV-------FPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCV 323
                 I  ++ +         F      L   +    L   L  + +++  D+     +
Sbjct: 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVEL 208

Query: 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
               AL  L   LS    +++K      +S I  G   +  A I       +  L+++ 
Sbjct: 209 ----ALDVLEKALSFPLLENVKI-ELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L +++     +D   +        ++L    S     V+    +  F+   L ++  ++ 
Sbjct: 35  LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVT 92

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG--NIAGDSPR 192
            +A  AL  +       +K  +   A    V LL SP D +R + +  L       DS  
Sbjct: 93  IKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL 150

Query: 193 CRDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGKPQPPFDQVS-PAL 245
            R  +        L  ++ G          S        + +      Q   + +   AL
Sbjct: 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELAL 210

Query: 246 PALAHLIHSNDDEVLTDACWALSYLSDG 273
             L   +     E +      +S + DG
Sbjct: 211 DVLEKALSFPLLENVKIELLKISRIVDG 238

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 56/295 (18%), Positives = 102/295 (34%), Gaps = 28/295 (9%)

Query: 107 PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166
           P +   +++ +   F   L  +D P ++  AA  L   A          +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L     D VR  AV A  NIA   P+     L    ++P L Q        +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEAL----VMPTLRQAAEDKSWRVRYMVADKF 266

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 285
           +     K   P    +  +PA  +L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
           + P + E +   +  V       +  +     +     IE+  LP  L  L         
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPI--LGKDNTIEH-LLPLFLAQL--------- 372

Query: 346 KEACWTVSNITAGNREQIQAVIEAN-----IIGPLVALLENAEFDIKKEAAWAIS 395
           K+ C  V      N + +  VI        ++  +V L E+A++ ++      + 
Sbjct: 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 20/231 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVK 166
            ++     ++P F+   L+++ P+++      L  +    G  + ++ ++     P  V+
Sbjct: 356 GKDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL-----PAIVE 409

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L       VR   +  +  +A        +      L  L          ++   AT  L
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
                   +      +  +P +  +    +        + ++ LS+      Q +    +
Sbjct: 466 KKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHM 520

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
            P +      P  +V     +++  I    D      ++ +  P L  L  
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQ 568

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 17/227 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP+ +A +      V+    +    +  +     + + +    +P  VE L  +   +++
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL----LPAIVE-LAEDAKWRVR 419

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
                 +  +A           D     + +  L      +RE A   L  +     +  
Sbjct: 420 LAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
                   ++P +  ++G P         + ++       Q    +    LP +  +   
Sbjct: 477 AHAT----IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH--MLPTVLRMAGD 530

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
               V  +   +L  +    ++     +++ V P L +        V
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDV 574

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 34/143 (23%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
            + ++   ++ + + AL+ +               A    ++ L +    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           N      R           V  L +L       +   A  +L     G  +         
Sbjct: 68  NFQ--DERA----------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 245 LPALAHLIHSNDDEVLTDACWAL 267
             A+  L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172
           +        +E  L  +  +++  AAW + N             D  AV   +KLL   S
Sbjct: 39  MGDEAFEPLLE-SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 173 DDVREQAVWALGNIAGDS 190
             VR  A  +L  I G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 34/142 (23%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +      +   +  VR     AL  +  ++              PLL  L+      + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEA------------FEPLLESLS-NEDWRIR 59

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A W + NF          Q   A+  L  L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 280 AVIEAGVFPRLAEFLMHPSPSV 301
            V  A     + +     +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           LL +D   ++  AA +L  I                     KL  + +   R+ AV  L 
Sbjct: 81  LLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S  L      +   +  V  D   ALS + D      +A         L E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
              A   +GN    D+         +A+  L+ LL  +    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQI--GGER 104

Query: 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
                    +   +  L E      +K A   +
Sbjct: 105 ---------VRAAMEKLAETGTGFARKVAVNYL 128

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 43/341 (12%), Positives = 94/341 (27%), Gaps = 34/341 (9%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPK 215
               V + + LL      VR   V  L ++      + + ++L     V  L  L    +
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 216 LSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL 270
             +  +    L    R             A   L  +I     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV---------------LIPALRTVGNIVTG 315
               N       E     R+  +      +                L+  L +  N    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 316 DDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ 368
                + + +   L  L  + ++      I  E   TVS +  G +              
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 369 ----ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405
               A ++  +  + E   F ++    +            Q
Sbjct: 360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ 400

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
               +  +L  D   L++  A+ +    +GT  ++ V        +    +   +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            AV ALG +                +  ++  L+      +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
                 A+  L  L     D V   A  ALS +     +K+         P++A+  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN--------PQVADIN 690

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 52/326 (15%), Positives = 92/326 (28%), Gaps = 37/326 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL---VLSQ 200
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +             Q
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 201 GGLVPLLAQLNGQPKLSML-----------------------RNATWTLSNFCRGKPQPP 237
           G      ++   +  L  L                       + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           S  V   A  TVG I     +       +    L CL+  LS      +    CW  S++
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAE--PRVASNVCWAFSSL 477

Query: 356 TAGNREQIQAVIEANIIGPLVALLEN 381
                E     +  +   P    L +
Sbjct: 478 AEAAYEAAD--VADDQEEPATYCLSS 501

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 46/300 (15%), Positives = 101/300 (33%), Gaps = 32/300 (10%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +       +VP  + F+   ++    + +  A  A   I  G        +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNAT 223
           +L+  PS  VR+ A W +G I        +  ++   L PLL  L      +  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283
           W  S+      +   D          + + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYE-AADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 284 A-----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
           +         +     +  +  V++  L+ V        +Q +  I+  +     N L  
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQV--------LQMESHIQSTSDRIQFNDLQS 582

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE--FDIKKEAAWAISN 396
                     C T+ N+    + Q    I   ++  L+ + ++      ++++A  A+S 
Sbjct: 583 L--------LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 47/282 (16%), Positives = 80/282 (28%), Gaps = 33/282 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS---- 199
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +              
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 200 ---------------QGGLVPLLAQLN-------GQPKLSMLRNATWTLSNFCRGKPQPP 237
                             LVP+L Q              +  + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLS 337
           S  V   A  TVG I     +       +    L CL+  LS
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.98
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3grl_A	651	General vesicular transport factor P115; vesicle t	99.79
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.75
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.67
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.65
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.63
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.6
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.6
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.59
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.59
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.58
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.56
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.55
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.55
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.55
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.55
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.54
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.52
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.42
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.35
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.35
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.29
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.24
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.23
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.08
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.06
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.03
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.91
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.89
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.89
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.86
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.81
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.78
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.71
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.66
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.65
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.51
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.5
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.43
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.23
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.14
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.11
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.08
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.07
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.07
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.06
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.99
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.95
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.89
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.7
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.69
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.66
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.64
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.61
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.54
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.54
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.51
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.48
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.36
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.33
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.33
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.31
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.12
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.89
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.83
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.78
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.75
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.47
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.16
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.15
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.11
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.97
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.96
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.84
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.73
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.5
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.42
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.24
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.07
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.71
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.37
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	94.05
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.7
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	93.58
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.55
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	93.53
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.32
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	92.48
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.55
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	90.32
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	89.17
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	88.83
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	84.94
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	83.46
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.11
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	82.35
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	81.95
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	81.75
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	80.49
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	80.19

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=7.1e-63  Score=478.57  Aligned_cols=414  Identities=48%  Similarity=0.749  Sum_probs=334.8

Q ss_pred             CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCC-CCccCCCCCchhhhccCHHH
Q 014864            1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV   77 (417)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~l~~   77 (417)
                      ||...+. .+++|+++||+ |+|++|+|+||+++.++|||+||++.+.|||++....++ ..|..............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            6666554 67899999998 999999999999999999999999999999987542222 12222111112222247899


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (417)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  157 (417)
                      +++.++|+|++.|..|+..++++++.+.+++++.+++.|++|.|+++|+.++++.++.+|+|+|+|++.++++++..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999987666999999999999999999999999999


Q ss_pred             CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC----chhHHHHHHHHHhhhhcCC
Q 014864          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~~a~~~l~~l~~~~  233 (417)
                      .|++|.|+.+|.+++..++++|+|+|+||+.+++.+++.+.+.|++++|+.++....    ...+++.++|++++++...
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995332    2457899999999999987


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                       +........+++|.|+.++.+++++++..++|+|++++.++++..+.+...|+++.|+.+|.++++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5556667789999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                      +.+++.....+++.|+++.|..+|.++ ++.++++|+|+|+|++.+++++...+++.|++|.|+.++.+++++++++|+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHhcCcc
Q 014864          393 AISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       393 ~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      +|+|++.+++.+++.++++.|++
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i  422 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGII  422 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCH
Confidence            99999999999999999999986

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=6.1e-57  Score=438.40  Aligned_cols=414  Identities=80%  Similarity=1.216  Sum_probs=332.4

Q ss_pred             CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHh
Q 014864            1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA   80 (417)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   80 (417)
                      ||.++++++++|+++||++++++|+|+||+++.++|||+||++++.|||++....+.. +.+..........+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~   81 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG   81 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence            7888888899999999999999999999999999999999999999999974322211 011111112233467999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCC
Q 014864           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (417)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~  160 (417)
                      .|.++++..+..|++.|+++++...+++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus        82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  161 (528)
T 4b8j_A           82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (528)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence            99999999999999999999988755889999999999999999998765899999999999999998999999999999


Q ss_pred             hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (417)
Q Consensus       161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (417)
                      ++.|+.+|.++++.+++.|+|+|+||+.+.+.++..+...|++++|+.++..+.++.++..++|+|++|+...+......
T Consensus       162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  241 (528)
T 4b8j_A          162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ  241 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence            99999999999999999999999999999998999999999999999999777899999999999999999887777777


Q ss_pred             hhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 014864          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (417)
Q Consensus       241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~  320 (417)
                      ..+++|.|+.++.++++.++..++|+|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus       242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  321 (528)
T 4b8j_A          242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT  321 (528)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence            89999999999999999999999999999999988888889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       321 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +.+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++++..+++.|+++.|+.+|.+++++++..|+|+|+|++..
T Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            98999999999999999765789999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHhcCcc
Q 014864          401 GTHEQIKYEHTFCTI  415 (417)
Q Consensus       401 ~~~~~~~~l~~~g~i  415 (417)
                      +++++..++++.|++
T Consensus       402 ~~~~~~~~l~~~~~i  416 (528)
T 4b8j_A          402 GSHDQIKYLVSEGCI  416 (528)
T ss_dssp             SCHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHCCCH
Confidence            889999999988764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=8.8e-53  Score=409.05  Aligned_cols=407  Identities=54%  Similarity=0.805  Sum_probs=352.0

Q ss_pred             CCchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhccc---CCCCCccC----CCCCchhhhccCHHH
Q 014864            7 SKADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLAND----VNAPGTAKKLENLPV   77 (417)
Q Consensus         7 ~~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~---~~~~~~~~----~~~~~~~~~~~~l~~   77 (417)
                      .+++.|++.||+ + +|++|+|+||+++.++|||+||++.+.|||++...   .+...+.+    ..........+.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   91 (530)
T 1wa5_B           12 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ   91 (530)
T ss_dssp             CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred             CchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHH
Confidence            366889999999 8 99999999999999999999999999999997532   11100000    000000012257999


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (417)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  157 (417)
                      +++.|.++++..+..|+..|+++++...+++++.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++
T Consensus        92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~  171 (530)
T 1wa5_B           92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD  171 (530)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999887656778889999999999999999733899999999999999988889999999


Q ss_pred             CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCC
Q 014864          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP  236 (417)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~  236 (417)
                      .|+++.|+.+|.++++.+++.|+|+|++++.+.+.+++.+...|+++.|+.++ .+.++.++..++|+|++|+... +..
T Consensus       172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~  250 (530)
T 1wa5_B          172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQP  250 (530)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999888999999999999999999 5588999999999999999987 666


Q ss_pred             ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~  316 (417)
                      ......+++|.|+.++.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.++
T Consensus       251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~  330 (530)
T 1wa5_B          251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  330 (530)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence            67777899999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014864          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN  396 (417)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~n  396 (417)
                      +...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++++++.+++.|+++.|+.+|.+++++++..|+|+|+|
T Consensus       331 ~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~  409 (530)
T 1wa5_B          331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN  409 (530)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            98888899999999999999998 99999999999999999889999999999999999999999999999999999999


Q ss_pred             hhCCCCH--HHHHHHHhcCcc
Q 014864          397 ATSGGTH--EQIKYEHTFCTI  415 (417)
Q Consensus       397 l~~~~~~--~~~~~l~~~g~i  415 (417)
                      ++..+++  ++..++++.|++
T Consensus       410 l~~~~~~~~~~~~~l~~~~~l  430 (530)
T 1wa5_B          410 ASSGGLQRPDIIRYLVSQGCI  430 (530)
T ss_dssp             HHHHTTTCTHHHHHHHHTTCH
T ss_pred             HHhcCCCcHHHHHHHHHCCCH
Confidence            9998776  888888887754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4e-51  Score=393.93  Aligned_cols=385  Identities=48%  Similarity=0.764  Sum_probs=323.1

Q ss_pred             hhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc
Q 014864           29 REDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP  108 (417)
Q Consensus        29 r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~  108 (417)
                      |....++.|+++.+....+.++...+.++....+.... ....-..++.+++.++|+|++.|..|+..+|++++.+++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp   92 (510)
T 3ul1_B           14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSN-QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP   92 (510)
T ss_dssp             ----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred             CCcccHHHHHHHHHhhccCCccccCCccccchhhhccc-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence            33445677777776666666655443332111111111 11111468999999999999999999999999999988999


Q ss_pred             HHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 014864          109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (417)
Q Consensus       109 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~  188 (417)
                      ++.+++.|++|.|+++|+.++++.+|.+|+|+|+|+++++++++..+++.|++|.|+.+|.+++..++++|+|+|+||+.
T Consensus        93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B           93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999876668999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHhcCCHHHHHHHhcCCC----chhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHH
Q 014864          189 DSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDA  263 (417)
Q Consensus       189 ~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  263 (417)
                      +++.+++.+.+.|++++|+.++....    ...+++.++|++++++... +........+++|.|+.++.+++++++..+
T Consensus       173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A  252 (510)
T 3ul1_B          173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  252 (510)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999995332    2457899999999999987 555666678999999999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh
Q 014864          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (417)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  343 (417)
                      +|+|++|+.+.++..+.+.+.|+++.|+.+|.++++.++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++.
T Consensus       253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~  331 (510)
T 3ul1_B          253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN  331 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred             HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence            9999999999998888899999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      +++.|+|+|+|++.+++++++.+++.|+++.|+.++.+++++++++|+|+|+|++.+++.+++.++++.|++
T Consensus       332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i  403 (510)
T 3ul1_B          332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII  403 (510)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=9.4e-40  Score=311.32  Aligned_cols=340  Identities=61%  Similarity=0.940  Sum_probs=314.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHh-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ++.+++.+.++++..+..|+..|+++++...++..+.++.. |++|.|+++|++++++.++..|+++|.+++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78999999999999999999999999875446677778888 99999999999983399999999999999998888888


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|++++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999999999998899999999999999999955678999999999999999876


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                       +........+++|.|+.++.++|+.++..++|+|.+++...++....+...|+++.|+.++.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             6656666689999999999999999999999999999998877788888999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                      +.+.+...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+|
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            999998888888999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHhcCcc
Q 014864          393 AISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       393 ~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      +|+|++..++++++.++++.|++
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i  363 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCI  363 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCH
Confidence            99999988788888888877654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.7e-40  Score=325.23  Aligned_cols=334  Identities=15%  Similarity=0.137  Sum_probs=290.5

Q ss_pred             HHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHH-HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch-
Q 014864           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE-  150 (417)
Q Consensus        75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~-  150 (417)
                      ++.++++|.++  |++.+..|++.|..+...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+|++.++++ 
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q  455 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ  455 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence            57788888887  899999999999999543  34444444 6899999999999988 89999999999999986521 


Q ss_pred             ----------------------------h---HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864          151 ----------------------------H---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (417)
Q Consensus       151 ----------------------------~---~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~  199 (417)
                                                  .   .+.+++.|++|.|+.++.++++.++++|+|+|+||+.+ +.+|..+++
T Consensus       456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~  534 (810)
T 3now_A          456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQ  534 (810)
T ss_dssp             CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence                                        1   27889999999999999999999999999999999976 459999999


Q ss_pred             cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCCh--hhhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCCh
Q 014864          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTN  275 (417)
Q Consensus       200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~  275 (417)
                      .|++++|+.++ .+.+...++.|+|+|.+|+... |...+  ....+++|.|+.+|.+++. ..+..++|+|.||+..++
T Consensus       535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE  613 (810)
T ss_dssp             TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence            99999999999 6677889999999999999764 22111  1235689999999986633 445789999999999988


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (417)
                      +..+.+++.|+++.|+.++.++++.++.+|+++|+|++.+++.+...+...|.++.|+.++.++ +..++++|+|+|+|+
T Consensus       614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanL  692 (810)
T 3now_A          614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAII  692 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999998776555432368999999999998 999999999999999


Q ss_pred             hcCCHHHHHHHHH-CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          356 TAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       356 ~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      +.+++.+++.+++ .|+++.|++++.++++++++.|+|+|.|++.+ +.++..++++.|++
T Consensus       693 t~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i  752 (810)
T 3now_A          693 TSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIM  752 (810)
T ss_dssp             HHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHH
T ss_pred             hCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCH
Confidence            9988999999998 89999999999999999999999999999985 67899999999876

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.5e-39  Score=311.76  Aligned_cols=339  Identities=26%  Similarity=0.395  Sum_probs=300.4

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.+|.|+++|++ +++.+|..|+++|.+++++. ++....+++.|++|.|+.+|++++ ++++..|+|+|+|++.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            689999999975 56899999999999998875 677888999999999999999998 999999999999999988999


Q ss_pred             HHHHHhCCChhHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864          152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l  226 (417)
                      +..+.+.|+++.|+.++.+++     ..+...++|++.|++.+...........|+++.|++++ .+.+++++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998644     46788999999999987655555555677899999999 888999999999999


Q ss_pred             hhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHH
Q 014864          227 SNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (417)
Q Consensus       227 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a  305 (417)
                      ++|+...+... .....+++|.|+.++.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            99998753322 23347899999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF  384 (417)
Q Consensus       306 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~  384 (417)
                      +++|+|++.++..+...+.+.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|++.|+
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~  415 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  415 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999997 688899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCC----CCHHHHHHHH-hcCcc
Q 014864          385 DIKKEAAWAISNATSG----GTHEQIKYEH-TFCTI  415 (417)
Q Consensus       385 ~v~~~a~~~L~nl~~~----~~~~~~~~l~-~~g~i  415 (417)
                      +++..++++|.|+...    +..+....++ +.||+
T Consensus       416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  451 (510)
T 3ul1_B          416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  451 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence            9999999999999753    2344444444 55553

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1e-38  Score=309.27  Aligned_cols=340  Identities=26%  Similarity=0.392  Sum_probs=301.9

Q ss_pred             ccCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      .+.+|.|++.|.. +++.+|..|+++|.+++++. +.....+++.|++|.|+.+|.+++ ++++..|+|+|+|++.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            3689999999975 66899999999999998775 566778999999999999999999 99999999999999998899


Q ss_pred             hHHHHHhCCChhHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (417)
                      .+..+++.|+++.|+.+|..++     ..+...++|++++++.+...........|+++.|+.++ .+.++.++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999998643     46788999999999987655555556677899999999 88899999999999


Q ss_pred             HhhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHH
Q 014864          226 LSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (417)
Q Consensus       226 l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~  304 (417)
                      |++++...+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            999998753322 2334789999999999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE  383 (417)
Q Consensus       305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~  383 (417)
                      |+++|+|++.+++.....+++.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 99999999999999997 67889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCC----CCHHHHHHH-HhcCcc
Q 014864          384 FDIKKEAAWAISNATSG----GTHEQIKYE-HTFCTI  415 (417)
Q Consensus       384 ~~v~~~a~~~L~nl~~~----~~~~~~~~l-~~~g~i  415 (417)
                      ++++..++++|.|+...    +..+....+ .+.||+
T Consensus       434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  470 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  470 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence            99999999999999753    244544444 456664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=9.7e-40  Score=304.87  Aligned_cols=336  Identities=18%  Similarity=0.173  Sum_probs=267.7

Q ss_pred             hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcH-HHHHHhCCHHHHHHhhcCCCC-----------HHHHHHHH
Q 014864           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFEAA  138 (417)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~-----------~~~~~~a~  138 (417)
                      +++.++.++..+.++|+..      .++++++.+.+++. ..+++.|++|.|+++|+..+.           ++++++|+
T Consensus        30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            4567889999998888763      34444443334445 779999999999999997542           79999999


Q ss_pred             HHHHHHhCCCchhHHHHHhCCCh----------hHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchHH
Q 014864          139 WALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRCR  194 (417)
Q Consensus       139 ~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~ll~~~~--~~-----i~~-------~a~~~L~nl~~~~~~~~  194 (417)
                      |+|+||+.++++.+....+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +++|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R  182 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR  182 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence            99999999999999998888888          66777777542  12     444       999999999776 7799


Q ss_pred             HHHHhcCCHHHHHHHhcC----------CCchhHHHHHHHHHhhhhcCCCCCChhh--hhchHHHHHHhhcCCChHHHHH
Q 014864          195 DLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTD  262 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~v~~~  262 (417)
                      +.+.+.|++++|+.++..          +.++.+++.|+|+|.||+.+++......  ..+++|.|+.+|.+++++++..
T Consensus       183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~  262 (458)
T 3nmz_A          183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV  262 (458)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence            999999999999999941          2357789999999999998864333222  3566999999999999999999


Q ss_pred             HHHHHHHhccC-ChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhhcCC
Q 014864          263 ACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGN  339 (417)
Q Consensus       263 a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~  339 (417)
                      ++|+|.+|+.. +++....+.+.|+++.|+.+| .+.++.++..|+.+|+||+.+++.....+. ..|+++.|+.+|.++
T Consensus       263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~  342 (458)
T 3nmz_A          263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR  342 (458)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence            99999999985 566778889999999999975 566889999999999999986654444455 789999999999987


Q ss_pred             Cch----hHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864          340 YKK----SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF  412 (417)
Q Consensus       340 ~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~  412 (417)
                       ++    .+++.|+|+|.|++.   +++++++.+.+.|+++.|+.+|.+++.+++++|+|+|+|++.+ +.++...+++.
T Consensus       343 -~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~  420 (458)
T 3nmz_A          343 -SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM  420 (458)
T ss_dssp             -CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred             -CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence             43    499999999999996   7899999999999999999999999999999999999999875 78999999999


Q ss_pred             Ccc
Q 014864          413 CTI  415 (417)
Q Consensus       413 g~i  415 (417)
                      |++
T Consensus       421 G~I  423 (458)
T 3nmz_A          421 GAV  423 (458)
T ss_dssp             THH
T ss_pred             CCH
Confidence            875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=288.56  Aligned_cols=327  Identities=18%  Similarity=0.172  Sum_probs=277.7

Q ss_pred             hccCHHHHHhhhcCC------------ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCH----------HHHHHhhcCC
Q 014864           71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE  128 (417)
Q Consensus        71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i----------~~Lv~lL~~~  128 (417)
                      +-+.+|.|+++|+..            +++.++.|+++|.+++++. ++..+...+.|++          +.+++++.+.
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            348899999999963            3699999999999999987 6667777777777          7778888765


Q ss_pred             C-CHH-----HHH-------HHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHH
Q 014864          129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG  184 (417)
Q Consensus       129 ~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~  184 (417)
                      . ..+     ++.       +|+|+|.|++.+ ++++..+++.|+++.|+.+|..           .++.++..|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 112     433       999999999775 9999999999999999999941           34678999999999


Q ss_pred             HhhCCCchHHHHHHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-C-CCChhhhhchHHHHHHhh-cCCChHHH
Q 014864          185 NIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVL  260 (417)
Q Consensus       185 nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~~~~v~  260 (417)
                      ||+.+++..+..+.. .|++++|+.+| .+.+++++..++|+|+||+... + ........+++|.|+.+| .+.++.++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            999988777777654 55699999999 6889999999999999999852 2 223333478999999975 55688999


Q ss_pred             HHHHHHHHHhccCChHHHHHHH-HcCChHHHHhhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCChHHH
Q 014864          261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL  332 (417)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L  332 (417)
                      ..++.+|++|+.+.++....+. ..|+++.|+.+|.+.+.    .++..|+++|.|++.   ++++..+.+.+.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            9999999999985544444455 78999999999998754    489999999999997   788888989999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       333 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      +.+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|+++|.+++.++++.|+|+|.||+...
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999998 9999999999999999888999999999999999999999999999999999999999874

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.3e-36  Score=293.58  Aligned_cols=324  Identities=26%  Similarity=0.371  Sum_probs=293.7

Q ss_pred             cCHHHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.|++.|.+++ +.++..|+++|.+++... ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            68999999999876 999999999999998754 566777889999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      +..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......|+++.|+.++ .+.++.++..++|+|++++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5789999999999999999876433 3345688999999999 7889999999999999999


Q ss_pred             cCCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHH
Q 014864          231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT  308 (417)
Q Consensus       231 ~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~  308 (417)
                      ...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            775322 2223368999999999999999999999999999998888888899999999999999998 89999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      |+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+++++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999999988888899999999999999998 999999999999999974 78999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 014864          388 KEAAWAISNATSGG  401 (417)
Q Consensus       388 ~~a~~~L~nl~~~~  401 (417)
                      ..|+++|.+++..+
T Consensus       432 ~~al~~L~~l~~~~  445 (528)
T 4b8j_A          432 TVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.6e-36  Score=292.16  Aligned_cols=325  Identities=26%  Similarity=0.358  Sum_probs=292.0

Q ss_pred             cCHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.+++.|.++ ++.++..|+++|.+++... +.....++..|+++.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6899999999987 8999999999999998754 456677889999999999999888 999999999999999988889


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+...|+++.|+.++.+.+..++..++|+|++++.+...........++++.|+.++ .+.++.++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999976522334556688999999999 77789999999999999998


Q ss_pred             CCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864          232 GKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (417)
Q Consensus       232 ~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~  310 (417)
                      ..+... .....+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            753222 2223589999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNR--EQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      +++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++. +.+  +....+++.|+++.|+.++.+++++++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99999988888889999999999999988 99999999999999997 455  788889999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 014864          388 KEAAWAISNATSGG  401 (417)
Q Consensus       388 ~~a~~~L~nl~~~~  401 (417)
                      ..|+++|.+++..+
T Consensus       446 ~~al~aL~~l~~~~  459 (530)
T 1wa5_B          446 EVTLDALENILKMG  459 (530)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.9e-36  Score=288.55  Aligned_cols=324  Identities=27%  Similarity=0.358  Sum_probs=289.6

Q ss_pred             cCHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.+++.|.++ ++.++..|++.+.+++... .+....+++.|++|.|+++|++++ +.++..|+++|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4689999999998 8999999999999998654 455667888999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      +..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +.....+ ..++++.|+.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999995 78999999999999999765 3322222 378999999999 778899999999999999


Q ss_pred             hcCCCC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864          230 CRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (417)
Q Consensus       230 ~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~  308 (417)
                      +...+. .......+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            986522 2222336889999999999999999999999999999988888888899999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      |++++.+++...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999999988888889999999999999998 999999999999999974 78888889999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 014864          388 KEAAWAISNATSGG  401 (417)
Q Consensus       388 ~~a~~~L~nl~~~~  401 (417)
                      ..|+++|.+++..+
T Consensus       379 ~~a~~aL~~l~~~~  392 (450)
T 2jdq_A          379 QVALNGLENILRLG  392 (450)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.9e-36  Score=286.07  Aligned_cols=321  Identities=18%  Similarity=0.209  Sum_probs=269.8

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.+++.|.++++..|..|+..|++++..+ ++....+++.|++|.|+++|++++ +.++..|+|+|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5799999999999999999999999987542 444558999999999999999988 99999999999999998899999


Q ss_pred             HHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc--------CC-------Cchh
Q 014864          154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS  217 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~-------~~~~  217 (417)
                      .+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++.        ..       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999988 568888888 99999999992        11       3567


Q ss_pred             HHHHHHHHHhhhhcCCCCCChhhh-h-chHHHHHHhhcC-----------------------------------------
Q 014864          218 MLRNATWTLSNFCRGKPQPPFDQV-S-PALPALAHLIHS-----------------------------------------  254 (417)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~-----------------------------------------  254 (417)
                      +++.++|+|+||+.. +....... . |++|.|+.+|.+                                         
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999986 22211222 2 666666655532                                         


Q ss_pred             ----------------------------------------------------------CChHHHHHHHHHHHHhccCChH
Q 014864          255 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       255 ----------------------------------------------------------~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                                                                                .++.+++.++|+|++++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                                                      1356777789999999976532


Q ss_pred             H---H-HHHH-HcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-----chhHHH
Q 014864          277 K---I-QAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----KKSIKK  346 (417)
Q Consensus       277 ~---~-~~~~-~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----~~~v~~  346 (417)
                      .   . +.++ +.|+++.|+.+|.+++..++..|+++|+|++.+.  ....++..|+++.|+.+|.++.     +.++..
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            1   2 3344 6899999999999999999999999999999754  3445667789999999999862     236888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCC
Q 014864          347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~  401 (417)
                      .++++|+|+..+++++...+.+.|+++.|++++.++ +.++++.|+|+|.|+....
T Consensus       396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            999999999998888899999999999999999999 9999999999999998753

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=7.5e-35  Score=277.67  Aligned_cols=331  Identities=19%  Similarity=0.187  Sum_probs=270.8

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC-Cchh
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~  151 (417)
                      ..++.++++|.++++.+|..|+..|.+++... +++...+++.|+||.|+++|++++ ++++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            57999999999999999999999999997654 677888999999999999999998 99999999999999996 5899


Q ss_pred             HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-----------------CC
Q 014864          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ  213 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----------------~~  213 (417)
                      +..+++.|+|+.|+.+|.+ .+.+++++++++|+||+.. +..+..+.+ +++++|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999996 6889999999999999985 457777775 57999999761                 12


Q ss_pred             CchhHHHHHHHHHhhhhcCCCC-CChhh----------------------------------------------------
Q 014864          214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ----------------------------------------------------  240 (417)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~-~~~~~----------------------------------------------------  240 (417)
                      .++.++.+++++|.||+...+. .....                                                    
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2567777777777777654311 00000                                                    


Q ss_pred             ----------------------hhchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChH---HHH-HHHHcCChHHHHhh
Q 014864          241 ----------------------VSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTND---KIQ-AVIEAGVFPRLAEF  293 (417)
Q Consensus       241 ----------------------~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~---~~~-~~~~~~~~~~L~~~  293 (417)
                                            ..++++.|+.+|. +.++.+++.++|+|.||+.+...   ..+ .+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                                  0123455666774 45788899999999999876521   222 34456889999999


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------KKSIKKEACWTVSNITAGNREQIQAV  366 (417)
Q Consensus       294 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (417)
                      |.+++..++..|+++|+|++.+....  .++..|++|.|+.+|.++.       ...+...|||+|+|++.+++++.+.+
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I  441 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL  441 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999877543  3568899999999998762       35788999999999999999999999


Q ss_pred             HHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864          367 IEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKYEHT  411 (417)
Q Consensus       367 ~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~l~~  411 (417)
                      ++.|+++.|+.++.++  .+.+++.|+|+|+|+..+  .+....+-+
T Consensus       442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~--~elr~~~kk  486 (584)
T 3l6x_A          442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY--KELRKPLEK  486 (584)
T ss_dssp             HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS--HHHHHHHHT
T ss_pred             HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC--HHHHHHHHH
Confidence            9999999999999876  789999999999999884  454454444

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-35  Score=291.81  Aligned_cols=325  Identities=13%  Similarity=0.089  Sum_probs=279.5

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCC----------------------------c---HHHHHHhCCHHHH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP----------------------------P---IEEVIRSGVVPRF  121 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~----------------------------~---~~~~~~~g~i~~L  121 (417)
                      +.+|.|+++|+++++.+++.|+++|.++..+.+.+                            .   ++.+++.|++|.|
T Consensus       421 g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L  500 (810)
T 3now_A          421 ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL  500 (810)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence            57899999999999999999999999998753111                            1   2678899999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH--HHh
Q 014864          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL--VLS  199 (417)
Q Consensus       122 v~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~--~~~  199 (417)
                      +.+|++++ +.++.+|+|+|+|++. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+.......  ...
T Consensus       501 V~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          501 CALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            99999988 9999999999999996 4789999999999999999999999999999999999998643221100  012


Q ss_pred             cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014864          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI  278 (417)
Q Consensus       200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  278 (417)
                      .|++++|+.+|..+.+...+..++|+|+||+..++. .......+++|.|+.++.++++.++..++++|+|++.+++.. 
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-  657 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-  657 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence            469999999994333445567899999999998532 223334789999999999999999999999999999876644 


Q ss_pred             HHHHH-cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          279 QAVIE-AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       279 ~~~~~-~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      ..++. .|.++.|+.++.+++..++..|+++|+|++.+++.+.+.+++ .|+++.|+.++.++ +..+++.|+|+|+|++
T Consensus       658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI  736 (810)
T ss_dssp             HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            44454 689999999999999999999999999999988888888998 89999999999999 9999999999999999


Q ss_pred             cCCHHHHHHHHHCCCHHHHHHHhccC---CHHHHHHHHHHHHHhhCCC
Q 014864          357 AGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~~L~nl~~~~  401 (417)
                      .+++++...+.+.|+++.|+++++..   +.++.+.|..+|.++...|
T Consensus       737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            98899999999999999999999755   6899999999999998765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=6.4e-33  Score=269.61  Aligned_cols=324  Identities=19%  Similarity=0.234  Sum_probs=274.9

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.+++.|.++++.++..|++.|.++.... +.....+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999999999999998764 456777889999999999999988 8999999999999999889999


Q ss_pred             HHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ..+.+.|+++.|+.++.+ .+...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+++.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            999999999999999986 45667888999999999754 5788999999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV  309 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L  309 (417)
                      ..+..  ....+++|.|+.++.+++++++..++|+|++++.++++....+.+.|+++.|+.++.+  .++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  3456899999999999999999999999999999888888889999999999999975  3478999999999


Q ss_pred             HHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (417)
Q Consensus       310 ~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  386 (417)
                      +|++.+++.   ....+.+.|+++.|..+|.++.++.+++.++|+|+|++.++.. ...+.+.|+++.|++++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999987543   3456788999999999999883469999999999999986444 477889999999999999989999


Q ss_pred             HHHHHHHHHH--hhCCCCH
Q 014864          387 KKEAAWAISN--ATSGGTH  403 (417)
Q Consensus       387 ~~~a~~~L~n--l~~~~~~  403 (417)
                      |++|+|+++|  +..++..
T Consensus       414 ~~~a~~~l~n~~~~~~~~~  432 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRM  432 (529)
T ss_dssp             C-----------CBTTBCH
T ss_pred             HHHHhcccCchhhhccccH
Confidence            9999998888  4443333

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.9e-33  Score=266.66  Aligned_cols=292  Identities=19%  Similarity=0.206  Sum_probs=244.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      .+|.|+.+|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 899999999999999887888889999999999999999999999999999999999988889999


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc--------C--------CChHHH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL  260 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~~~~v~  260 (417)
                      +.+.|++++|+++|..+.++++++.++|+|+||+..+. .......+++|.|+.++.        +        .++++.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            99999999999999547899999999999999999843 333333499999999993        2        246677


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHc-CChHHHHhhcCC------CChhhHHHHHHHHHHhhcCC-----------------
Q 014864          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGD-----------------  316 (417)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~-----------------  316 (417)
                      ..++|+|.||+.+ ++..+.+.+. |+++.|+.+|.+      .+..+...++.+|.|++...                 
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999987 6777888887 999999999985      45678888988899886321                 


Q ss_pred             ---------------------------------hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 014864          317 ---------------------------------DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (417)
Q Consensus       317 ---------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (417)
                                                       +...+.+++.++++.++.+|.++.++.+++.|+|+|+|+++++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             112233455677899999998775789999999999999986532  


Q ss_pred             -HH-HHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864          362 -QI-QAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCT  414 (417)
Q Consensus       362 -~~-~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~  414 (417)
                       .+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++..   ++..+++..|+
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~  372 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQV  372 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHT
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhh
Confidence             23 4455 689999999999999999999999999999885   24455555443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=271.70  Aligned_cols=326  Identities=19%  Similarity=0.235  Sum_probs=275.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.+++.|.++++.++..|+.+|.+++... ++....+.+.|+++.|+.+|++++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            67899999999999999999999999998775 566777889999999999999988 8888889999999999889999


Q ss_pred             HHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999874 467889999999999965 45789999999999999999 66789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV  309 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L  309 (417)
                      ..+.  .....+++|.|+.++.+++++++..++|+|++|+.+++.....+.+.|+++.|+.++.+.  .+.++..|+++|
T Consensus       254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            7543  234468999999999999999999999999999998888888899999999999999864  279999999999


Q ss_pred             HHhhcCChH--HH-HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864          310 GNIVTGDDM--QT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (417)
Q Consensus       310 ~~l~~~~~~--~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  386 (417)
                      ++++...+.  .. ..+.+.|+++.|+.+|.++.++.+++.|+|+|+|++.+...+ +.+++.|+++.|+++|.+.++++
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhh
Confidence            999975442  22 337788999999999998734799999999999999875544 78889999999999999877766


Q ss_pred             HHHHHHHHHH--hhCCCCHHH
Q 014864          387 KKEAAWAISN--ATSGGTHEQ  405 (417)
Q Consensus       387 ~~~a~~~L~n--l~~~~~~~~  405 (417)
                      |++|+|+++|  ++.+++.++
T Consensus       411 r~~a~~al~n~~~~~~~~~~~  431 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEE  431 (644)
T ss_dssp             TTC----------CCSSCHHH
T ss_pred             hhHhhhccccchhcccccHHH
Confidence            6666666665  444333333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=2.9e-33  Score=253.93  Aligned_cols=270  Identities=20%  Similarity=0.180  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~  199 (417)
                      ...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|..           .++.++..|+|+|.||+.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35566899999999986 8999999999999999999942           34779999999999999888777777754


Q ss_pred             -cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-C-CCChhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh
Q 014864          200 -QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       200 -~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                       .|++++|+.+| .+++++++..++|+|.||+... + ........+++|.|+.+| .+.+++++..++++|.+|+...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             55699999999 7889999999999999999852 2 223334478999999975 66789999999999999998665


Q ss_pred             HHHHHHH-HcCChHHHHhhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864          276 DKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (417)
Q Consensus       276 ~~~~~~~-~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  347 (417)
                      +....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   ++++.++.+.+.|+++.|+.+|.++ +..++++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5545555 78999999999997754    489999999999997   7888888899999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      |+|+|+|++.+++++++.+++.|++|.|+++|.+++.++++.|+|+|.||+.....
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988899999999999999999999999999999999999999998543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=2.3e-33  Score=254.57  Aligned_cols=275  Identities=18%  Similarity=0.147  Sum_probs=238.7

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIASGTSEHTKVV  155 (417)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~i  155 (417)
                      +...+..|+++|.++...  ++..+.+++.|+++.|+.+|..+          .++.++..|+|+|.|++.+++..+..+
T Consensus        45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345556899999999643  67888899999999999999521          136899999999999999877777777


Q ss_pred             Hh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       156 ~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .. .|+||.|+.+|.++++++++.|+|+|+||+.. ++.++..+.+.|++++|+++|..+.+..+++.++++|+||+...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            54 46699999999999999999999999999985 66789999999999999998757778899999999999999843


Q ss_pred             -CCCChhh-hhchHHHHHHhhcCCCh----HHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHhhcCCCChhhHHH
Q 014864          234 -PQPPFDQ-VSPALPALAHLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (417)
Q Consensus       234 -~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~  304 (417)
                       ....... ..+++|.|+.+|.++++    +++..++|+|.+|+.   ..++..+.+.+.|+++.|+.+|.+++..++..
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence             2222333 47999999999987654    599999999999997   67778888999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (417)
Q Consensus       305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (417)
                      |+++|+|++.+++++...+.+.|++|.|+.+++++ ++.+++.|+|+|.|++.+++..+
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999998999999999999999999999998 99999999999999999766543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1e-31  Score=256.18  Aligned_cols=296  Identities=20%  Similarity=0.205  Sum_probs=243.6

Q ss_pred             HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-Cch
Q 014864          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR  192 (417)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~  192 (417)
                      ..+.+|.|+.+|.+++ ++++..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+|+|+||+.+ ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4667999999999988 99999999999999998899999999999999999999999999999999999999985 678


Q ss_pred             HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc------------------C
Q 014864          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S  254 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~------------------~  254 (417)
                      ++..+.+.|++++|+.+|....+..+++.++++|++|+..+ .....+..+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            99999999999999999965578899999999999999864 3333444678999999771                  2


Q ss_pred             CChHHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHhhcC--------------------------------------
Q 014864          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM--------------------------------------  295 (417)
Q Consensus       255 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l~--------------------------------------  295 (417)
                      ++++++.+++++|.||+..+++..+.+++. |+++.|+.++.                                      
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999998876655555553 33444444432                                      


Q ss_pred             ------------------------------------CCChhhHHHHHHHHHHhhcCChHH----HHHHHHcCChHHHHHh
Q 014864          296 ------------------------------------HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL  335 (417)
Q Consensus       296 ------------------------------------~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~l  335 (417)
                                                          +.++.+++.|+++|.|++.+....    ...+.+.+++|.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                                                223556677888888888765322    1223456889999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--------CHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864          336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--------EFDIKKEAAWAISNATSGGTHEQIK  407 (417)
Q Consensus       336 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--------~~~v~~~a~~~L~nl~~~~~~~~~~  407 (417)
                      |.++ +..+++.|+|+|+|++.+..  .+.++..|++|.|+.+|.++        ..++...|+++|+|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 99999999999999998643  23455779999999999876        367899999999999976 789999


Q ss_pred             HHHhcCcc
Q 014864          408 YEHTFCTI  415 (417)
Q Consensus       408 ~l~~~g~i  415 (417)
                      .+++.|||
T Consensus       440 ~I~~~g~I  447 (584)
T 3l6x_A          440 KLRETQGI  447 (584)
T ss_dssp             HHHHTTHH
T ss_pred             HHHHCCCh
Confidence            99999886

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.8e-31  Score=259.36  Aligned_cols=334  Identities=16%  Similarity=0.158  Sum_probs=287.0

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.+++.|.+ +++..+..|+..|+++...  +++...+.+.|++|.|+++|++++ +.++..|+++|.+++.+++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468999999975 5899999999999998654  457777889999999999999988 999999999999999987778


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++....+...+..++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888899999999999999999999999999999998888999999999999999999766677788889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~  311 (417)
                      .+.........++++.|+.++.++++.++..++|+|.+++.......   ...++++.|+.++.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            64433334447899999999999999999999999999997654211   123678999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHCCCHHHHHHHhccCC-HHH
Q 014864          312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI  386 (417)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~-~~v  386 (417)
                      ++.+++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++   ....+.+.|+++.|+++|.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998888888899999999999999763 1479999999999999986433   4567788999999999999876 699


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864          387 KKEAAWAISNATSGGTHEQIKYEHTFCT  414 (417)
Q Consensus       387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~  414 (417)
                      ++.++|+|+|++.+.  +....+.+.|+
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~  398 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGA  398 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTH
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCC
Confidence            999999999999853  23356666654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.98  E-value=2.2e-30  Score=260.97  Aligned_cols=317  Identities=19%  Similarity=0.242  Sum_probs=269.1

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.|++.|.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            67899999999999999999999999998764 556666778999999999999987 8999999999999999888999


Q ss_pred             HHHHhCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ..+.+.|+++.|+.++.+.+ ...++.++.+|.+++... ..+..+++.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998754 567778999999999754 4788899999999999999 67788999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-C-hhhHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-S-PSVLIPALRTV  309 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~-~~v~~~a~~~L  309 (417)
                      ..+.  .....+++|.|+.++.+.++.++..++|+|++|+.++++....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  233478999999999999999999999999999999888888899999999999999863 3 48999999999


Q ss_pred             HHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (417)
Q Consensus       310 ~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  386 (417)
                      ++|+..+..   ....+...++++.|+.+|.++..+.+++.|+|+|+|++.++ .....+.+.|+++.|+++|.++++++
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence            999876543   23457789999999999998834599999999999999864 44578889999999999998766555


Q ss_pred             HHHHHHHHHH
Q 014864          387 KKEAAWAISN  396 (417)
Q Consensus       387 ~~~a~~~L~n  396 (417)
                      +++|+|+++|
T Consensus       547 ~~~aa~al~n  556 (780)
T 2z6g_A          547 QRRTSMGGTQ  556 (780)
T ss_dssp             HHTTC-----
T ss_pred             HHHHhhcccc
Confidence            5544444433

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=257.60  Aligned_cols=334  Identities=16%  Similarity=0.154  Sum_probs=285.0

Q ss_pred             cCHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.+++.|.++ ++.++..|+..|+++...  ......+.+.|+++.|+++|++++ +.++..|+++|.+++.+.+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4589999999874 899999999999987544  447777889999999999999988 999999999999999987778


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999988888999999999999999999666667888999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~  311 (417)
                      ...........++++.|+.++.+++..++..++|+|.+++......   ....++++.|+.++.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444444789999999999999999999999999998764321   1112679999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCH--HHH-HHHHHCCCHHHHHHHhccCC-HHH
Q 014864          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR--EQI-QAVIEANIIGPLVALLENAE-FDI  386 (417)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~--~~~-~~l~~~~~i~~L~~~l~~~~-~~v  386 (417)
                      ++.+++.....+.+.|+++.|+.++.+.. .+.++..|+++|+|++..++  +.. ..+.+.|+++.|+++|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            99998888888999999999999998742 37999999999999997433  233 34778999999999999874 799


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864          387 KKEAAWAISNATSGGTHEQIKYEHTFCT  414 (417)
Q Consensus       387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~  414 (417)
                      ++.|+|+|+|++.+.  +....+++.|+
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~  395 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGA  395 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCC
Confidence            999999999999853  22366666654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=2.1e-29  Score=220.58  Aligned_cols=242  Identities=32%  Similarity=0.499  Sum_probs=219.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      |.++.|+++|.+++ ++++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999998 99999999999999998888999999999999999999999999999999999999998888888


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                      .+.+.|+++.++.++                                          .+++++++..++++|++++...+
T Consensus        81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~  118 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD  118 (252)
T ss_dssp             HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence            887777776666665                                          34456667777777777776666


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (417)
                      +....+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|+
T Consensus       119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI  197 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence            6677788899999999999999999999999999999999988888899999999999999988 999999999999999


Q ss_pred             hcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      +.++++..+.+.+.|+++.|++++.+++++++..|+|+|.|++...
T Consensus       198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence            9988999999999999999999999999999999999999999875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=3.5e-30  Score=259.45  Aligned_cols=334  Identities=16%  Similarity=0.158  Sum_probs=284.0

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.|++.|.+ +++.++..|+.+|+++...  ..+...+.+.|+++.|+.+|++++ +.++..|+++|.+++.+++..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            357888999975 4899999999999997543  455777889999999999999998 999999999999999987888


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++...........++.++.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888999999999999999999665566777889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~  311 (417)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6433333444789999999999999999999999999998765321   1123578999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHCCCHHHHHHHhccCC-HHH
Q 014864          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI  386 (417)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~-~~v  386 (417)
                      ++.+++.....+.+.|+++.|+.+|.+..+ ..++..|+++|+||+..+++   ....+...++++.|+++|.+++ +.+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999998888889999999999999986313 48999999999999875433   2346778999999999999876 499


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864          387 KKEAAWAISNATSGGTHEQIKYEHTFCT  414 (417)
Q Consensus       387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~  414 (417)
                      ++.|+|+|+|++.+  .+....+.+.|+
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~  531 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGA  531 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCC
Confidence            99999999999974  344466666654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=1.3e-29  Score=222.00  Aligned_cols=239  Identities=36%  Similarity=0.551  Sum_probs=220.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      ...+.++..|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            35889999999998 89999999999887776678888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  274 (417)
                      .+.+.|+++.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6688999999999999999886444 34445789999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (417)
                      ++....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|..++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999999998888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 014864          355 ITA  357 (417)
Q Consensus       355 l~~  357 (417)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=3e-28  Score=213.31  Aligned_cols=241  Identities=31%  Similarity=0.457  Sum_probs=217.8

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.++.+++.|.++++.++..|++.|.+++... .+....+++.|+++.|+++|++++ +.++..|+++|++++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            46899999999999999999999999998764 457778999999999999999998 9999999999999999889999


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ..+.+.|+++.|+.++.++++.++..|+++|++++...+..+..+.+.|+++.|++++ .                    
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~--------------------  138 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-T--------------------  138 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-T--------------------
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-c--------------------
Confidence            9999999999999999999999999999999999988887888777777777777777 2                    


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                                           ++++.++..++++|++++...++..+.+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus       139 ---------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          139 ---------------------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI  197 (252)
T ss_dssp             ---------------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence                                 25667778888888888877777777888999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      +.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++..
T Consensus       198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          198 ASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             TTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC
Confidence            998888888899999999999999998 999999999999999864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=6.2e-29  Score=217.75  Aligned_cols=239  Identities=36%  Similarity=0.520  Sum_probs=218.3

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC-CC
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PP  237 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~-~~  237 (417)
                      ...+.++..|.+++++++..|+++|.++....+..+..+.+.|+++.|+.++ .++++.++..++|+|.+++...+. ..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5688999999999999999999999887766666788899999999999999 667799999999999999986532 23


Q ss_pred             hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      .....+++|.|+.++.++++.++..++|+|++++...+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            33347899999999999999999999999999999888776789999999999999999999999999999999999998


Q ss_pred             HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      .....+.+.|+++.|+.++.++ ++.++..|+|+|+|++.++++....+.+.|+++.|+.++.+++++++..|+|+|.|+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888889999999999999998 999999999999999998899999999999999999999999999999999999999


Q ss_pred             hC
Q 014864          398 TS  399 (417)
Q Consensus       398 ~~  399 (417)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.6e-25  Score=214.94  Aligned_cols=320  Identities=10%  Similarity=0.124  Sum_probs=256.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH-HhCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhCCCch--
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGTSE--  150 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~~~--  150 (417)
                      .+.+.+.|.+++.+.+..|++.|..+...  .+....+. +.|+++.|++++++ .+ ..+.+.++.+|.|++...+.  
T Consensus       336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          336 SEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccc
Confidence            46677777777777799999999988432  33444444 55679999999996 55 78999999999999985431  


Q ss_pred             ------------------------------------hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864          151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (417)
Q Consensus       151 ------------------------------------~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (417)
                                                          .+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +.+|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                345678889999999999999999999999999999977 5699


Q ss_pred             HHHHhcCCHHHHHHHhcCCCch--hHHHHHHHHHhhhhcCC-CCCChh--hhhchHHHHHHhhcC-CCh-----------
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGK-PQPPFD--QVSPALPALAHLIHS-NDD-----------  257 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~--~~~~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~L~~ll~~-~~~-----------  257 (417)
                      ..++++|++++|+.++...++.  ..+..|+++|.+++... |...+.  ...+++|.|+.+|.. ++.           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999554433  38899999999999653 211110  114899999999983 221           


Q ss_pred             --HHHHHHHHHHHHhccCCh----HHHHHHHHc-CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc----
Q 014864          258 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----  326 (417)
Q Consensus       258 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----  326 (417)
                        --...|+.+|.||+..++    +....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.    
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              126689999999998873    334567774 899999999999999999999999999998555321223322    


Q ss_pred             --CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHhcc--CCHHHHHHHHHHHHHhhC
Q 014864          327 --QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLEN--AEFDIKKEAAWAISNATS  399 (417)
Q Consensus       327 --~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~  399 (417)
                        +.++.|+.+++++ +..+|+.|+|+|+|++.+++...+.+++. ++++.+++++.+  ++.+++..++.++.|++.
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence              2378899999988 99999999999999988778888888876 799999999998  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=2.1e-24  Score=183.39  Aligned_cols=201  Identities=36%  Similarity=0.547  Sum_probs=176.2

Q ss_pred             HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       113 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      ...|..+.|+.+|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++.
T Consensus         9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            35678999999999998 99999999999999988899999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      .+..+.+.|+++.|+.++ ++                                         +++.++..++|+|++++.
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~-----------------------------------------~~~~v~~~a~~~L~~l~~  125 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-SS-----------------------------------------PNEQILQEALWALSNIAS  125 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-TC-----------------------------------------SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHH-cC-----------------------------------------CcHHHHHHHHHHHHHHHc
Confidence            888888888888877777 33                                         345556666666666666


Q ss_pred             CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      +.++....+++.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|..++.++ ++.+++.|+++|
T Consensus       126 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL  204 (210)
T 4db6_A          126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEAL  204 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            6666667788899999999999999999999999999999999888888899999999999999998 999999999999


Q ss_pred             HHHhc
Q 014864          353 SNITA  357 (417)
Q Consensus       353 ~nl~~  357 (417)
                      .+++.
T Consensus       205 ~~l~~  209 (210)
T 4db6_A          205 EKLQS  209 (210)
T ss_dssp             HHHCC
T ss_pred             HHHhc
Confidence            99975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=1.1e-24  Score=185.15  Aligned_cols=199  Identities=38%  Similarity=0.543  Sum_probs=181.2

Q ss_pred             hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (417)
Q Consensus       199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  277 (417)
                      ..|..+.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.+|.++++.++..++|+|++++.++++.
T Consensus        10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            456788999999 8889999999999999999765332 23344689999999999999999999999999999888888


Q ss_pred             HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ...+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.+++++ ++.++..|+|+|+|++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            88899999999999999999999999999999999999998888899999999999999998 99999999999999999


Q ss_pred             CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ++++....+.+.|+++.|++++.++++++++.|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            889899999999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=3.5e-24  Score=189.23  Aligned_cols=226  Identities=14%  Similarity=0.097  Sum_probs=186.3

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l  209 (417)
                      .+-+..|+..|.+++.. .++...+...|++|.|+. +|.++++.++..|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46788999999999985 667788889999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHhhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864          210 LNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (417)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  288 (417)
                      +..+++..+++.|+|+|++++++.+... .....+++|.|+.+|.+++..++..++|+|++++.++++..+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            9656688999999999999999764322 333468999999999999999999999999999988888888999999999


Q ss_pred             HHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc--CC---hHHHHHhhcCCC-chhHHHHHHHHHHHHhc
Q 014864          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QA---LPCLLNLLSGNY-KKSIKKEACWTVSNITA  357 (417)
Q Consensus       289 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~---l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~  357 (417)
                      .|+.+|.++++.++..|+++|++++.+.+.........  .+   +..-.+-+++.. ..++.+.+...+-++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998865443322211  11   112233344331 34566666666666654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=3.2e-23  Score=183.08  Aligned_cols=185  Identities=13%  Similarity=0.168  Sum_probs=167.4

Q ss_pred             hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH-hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l  294 (417)
                      .+-+..|+..|.+++............|++|.|+. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            45677888888888876433333344789999999 99999999999999999999999888888899999999999999


Q ss_pred             CC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Q 014864          295 MH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (417)
Q Consensus       295 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (417)
                      .+ ++..++..|+++|+|++.+++...+.+.+.|+++.|+.+|+++ ++.++..|+|+|++++.++++.++.+++.|+++
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            85 4789999999999999999998888899999999999999998 999999999999999998888999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          374 PLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       374 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .|+.+|.+++++++..|+++|+|++...
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999873

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=5.5e-23  Score=173.66  Aligned_cols=197  Identities=19%  Similarity=0.150  Sum_probs=171.4

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864          117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (417)
                      .+|.|+++|.+++ +  +++..|+++|.+++.+++..+..+.+.|+||.|+.+|.++++++++.|+|+|.||+.+++.++
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  899999999999998889999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----------------CCChH
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE  258 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~~~~  258 (417)
                      ..+.+.|++++|+++|..+.+.++++.++.+|+||+..+... .....+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999955678999999999999999865333 3344668999988763                13678


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHhhcCC------CChhhHHHHHHHHHHhhcC
Q 014864          259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG  315 (417)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~~  315 (417)
                      ++.++.++|.||+..+++..+.+.+. |+++.|+.+++.      .+.+.++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998877777778775 678999999874      2567889999999999865

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.1e-22  Score=191.54  Aligned_cols=325  Identities=14%  Similarity=0.112  Sum_probs=246.8

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      ++-|.+.+++  ..++..|+-.|+++.+....... .+  ....+.+..+|.+++ .+.+..|++.|..++.+ ++.+..
T Consensus       298 ~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~-~~VKe~  370 (778)
T 3opb_A          298 LQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSLK-ASVKIM  370 (778)
T ss_dssp             HHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTTS-SHHHHH
T ss_pred             HHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCC-HHHHHH
Confidence            3444555544  47788899999998765422211 11  125788999999877 66799999999999986 777777


Q ss_pred             HHhC-CChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------HH
Q 014864          155 VIDH-GAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR--------------------------------------CR  194 (417)
Q Consensus       155 i~~~-g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~--------------------------------------~~  194 (417)
                      +++. |+++.|+.+++. .+..+...++.+|.|++...+.                                      .+
T Consensus       371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~  450 (778)
T 3opb_A          371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE  450 (778)
T ss_dssp             HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence            7765 669999999995 7788999999999999864321                                      35


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChH---HHHHHHHHHHHhc
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSYLS  271 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~l~~l~  271 (417)
                      ..+.+.|+++.|+.++ .+.++.++..++|+|.+|+............|+++.|+.++.+....   .+..|+.+|.+++
T Consensus       451 ~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl  529 (778)
T 3opb_A          451 KYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML  529 (778)
T ss_dssp             HHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            6778999999999999 77889999999999999998755444555589999999999877543   8899999999998


Q ss_pred             cCChHHHHHHHH----cCChHHHHhhcCC-CChh------------h-HHHHHHHHHHhhcCCh----HHHHHHHHc-CC
Q 014864          272 DGTNDKIQAVIE----AGVFPRLAEFLMH-PSPS------------V-LIPALRTVGNIVTGDD----MQTQCVIEY-QA  328 (417)
Q Consensus       272 ~~~~~~~~~~~~----~~~~~~L~~~l~~-~~~~------------v-~~~a~~~L~~l~~~~~----~~~~~~~~~-~~  328 (417)
                      ...+...  ++.    .|+++.|+.+|.. +...            . +..|+.+|+|++..++    +....++.+ |+
T Consensus       530 is~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga  607 (778)
T 3opb_A          530 IFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY  607 (778)
T ss_dssp             HTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred             hcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence            5543322  221    2789999999983 2211            1 6689999999999873    335667775 99


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHCC------CHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEAN------IIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~------~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ++.|..++.++ +..+|+.|+|+++|++.. ++.+ +.+.+.+      -++.|+.+++.++.++|..|+|+|.|++.. 
T Consensus       608 ~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-  684 (778)
T 3opb_A          608 WSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-  684 (778)
T ss_dssp             HHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-
Confidence            99999999998 999999999999999974 5443 3444322      378899999999999999999999999754 


Q ss_pred             CHHHHHHHHhc
Q 014864          402 THEQIKYEHTF  412 (417)
Q Consensus       402 ~~~~~~~l~~~  412 (417)
                      ++.....+++.
T Consensus       685 ~~~ia~~ll~~  695 (778)
T 3opb_A          685 IPLIAKELLTK  695 (778)
T ss_dssp             CHHHHHHHTTC
T ss_pred             ChHHHHHHHHc
Confidence            34444555544

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=5.4e-22  Score=167.61  Aligned_cols=197  Identities=16%  Similarity=0.189  Sum_probs=166.1

Q ss_pred             cCHHHHHhhhcCCCh--HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864           73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      ..++.+++.|.++++  ++|..|+..+.++.... +++...+++.|++|.|+++|++++ +++|..|+|+|.|++.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            478999999999988  89999999999987654 567778999999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---------------CCC
Q 014864          151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP  214 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---------------~~~  214 (417)
                      ++..+.+.|+||.|+++|. +++.+++++++.+|+||+.... .+..+.+. ++++|+.++.               ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999998 5799999999999999997655 66676664 6999988662               113


Q ss_pred             chhHHHHHHHHHhhhhcCCCCCCh-hh-hhchHHHHHHhhcC------CChHHHHHHHHHHHHhccC
Q 014864          215 KLSMLRNATWTLSNFCRGKPQPPF-DQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG  273 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~-~~-~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~l~~~  273 (417)
                      ++.++++++++|.||+...+.... .. ..|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            679999999999999986532222 22 25678999999864      2667899999999999864

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.79  E-value=1.2e-16  Score=150.73  Aligned_cols=323  Identities=16%  Similarity=0.147  Sum_probs=254.2

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhCCCch
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      +.++.|.+.+.+ .-.+.+..|+..|+.+...    .. ..+..++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~----y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK----YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT----TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH----hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            578999998886 5588999999999998532    22 234456699999999875 3478888999999988775432


Q ss_pred             -----------------hHHHH-HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-HHHHHHhc-CCHHHHHHHh
Q 014864          151 -----------------HTKVV-IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQ-GGLVPLLAQL  210 (417)
Q Consensus       151 -----------------~~~~i-~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~ll  210 (417)
                                       ..+.+ .+.+.++.|+.+|++.+..++..++.+|..|+...+. .++.+... ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             22233 3457899999999999999999999999999988776 78888854 8999999999


Q ss_pred             cCCCchhHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (417)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (417)
                       ++..+.++..++..|.+|+.+++..+.... +++++.|+.++..+.    ..+..+++.++.+|...+..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             777889999999999999999866555444 699999999997654    47889999999999999988888999999


Q ss_pred             ChHHHHhhcCCCCh------hhHHH---HHHHHHHhhcCCh------HHHHHHHHcCChHHHHHhhcCCC-chhHHHHHH
Q 014864          286 VFPRLAEFLMHPSP------SVLIP---ALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC  349 (417)
Q Consensus       286 ~~~~L~~~l~~~~~------~v~~~---a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~  349 (417)
                      +++.|.+++..++.      ....+   ++.++.-++....      .....+.+.|+++.++.++.+.. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999975432      12233   6666777766532      34456788999999999987652 568999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHCC---------CHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCC
Q 014864          350 WTVSNITAGNREQIQAVIEAN---------IIGPLVALLEN-AEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .+++.+..+++.....+....         ++..|+.++.+ ..+++|..|+.++..+....
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N  396 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN  396 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence            999999999998877776533         33334444544 46899999999999999874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=3.2e-19  Score=182.76  Aligned_cols=317  Identities=15%  Similarity=0.158  Sum_probs=229.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHH-H---HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-V---IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~---~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  149 (417)
                      -++.+++.+.++++..+..|+.++..++... .+.... .   .-..+++.|++++++++ +.+|..|+++|.++....+
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence            4678888888889999999999999887543 121110 0   01335888888888887 9999999999998887644


Q ss_pred             hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ......+. +.++.++.++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus       207 ~~~~~~~~-~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLHID-SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTSHH-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence            32221121 56788889999999999999999999999766543222222 3567777777 678899999999999999


Q ss_pred             hcCCCCCC--hhhhhchHHHHHHhh-----------cC-----------CChHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864          230 CRGKPQPP--FDQVSPALPALAHLI-----------HS-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (417)
Q Consensus       230 ~~~~~~~~--~~~~~~~l~~L~~ll-----------~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (417)
                      +.......  .......+|.++..+           .+           .+..++..++.++..++...++   .++. .
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~  359 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-H  359 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-H
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-H
Confidence            97631110  112346677777776           22           1224677888888888754321   1222 3


Q ss_pred             ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (417)
Q Consensus       286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (417)
                      +++.+...+.++++.+|..|++++|+++.+....... .-.++++.++..++++ ++.||..|+|++++++...+.....
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence            6788888889999999999999999999988764442 2346789999999998 9999999999999998632221101


Q ss_pred             HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ..-.++++.|+..+.+.++.++..|+++|.+++...
T Consensus       438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            111257888999998889999999999999998654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=2.9e-16  Score=139.17  Aligned_cols=255  Identities=15%  Similarity=0.105  Sum_probs=201.1

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ..++.+++.|.++++.++..|+..|.++..            .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            468999999999999999999999998741            235889999999988 8999999999999875322 11


Q ss_pred             HHHHhCCChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       153 ~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      .     ..++.|. .++.++++.++..++++|+++....+....     ..++.|+..+ .++++.++..++++|.++..
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            1     1334444 245778999999999999999754332222     2477888888 78899999999999998764


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~  311 (417)
                      .          ..+|.|..++.++++.++..++++|+.+....+.         +++.|+.++.++++.++..|+++|+.
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          4789999999999999999999999998543332         46788999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHH
Q 014864          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEA  390 (417)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a  390 (417)
                      +.           ....++.|...+.++   .++..|+++|+.+..  +         .++|.|..++.+ .++++...+
T Consensus       219 ~~-----------~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RK-----------DKRVLSVLCDELKKN---TVYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TT-----------CGGGHHHHHHHHTSS---SCCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hC-----------CHhhHHHHHHHhcCc---cHHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence            86           234688899999865   389999999999853  1         578899999864 577888888


Q ss_pred             HHHHHH
Q 014864          391 AWAISN  396 (417)
Q Consensus       391 ~~~L~n  396 (417)
                      ..+|.+
T Consensus       274 ~~~l~~  279 (280)
T 1oyz_A          274 IDKLKR  279 (280)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            877743

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.75  E-value=2.8e-17  Score=168.42  Aligned_cols=310  Identities=14%  Similarity=0.151  Sum_probs=230.7

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      -+.+++.|.++++.++..++.++..++..+....+     .++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            35667778888899999999999999876423333     345999999999988 899999999999998754333211


Q ss_pred             HH----hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       155 i~----~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      -.    -..+++.|+.++.++++.++..|+++|+++....+....... .+.++.++..+ .++++.++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    114577788888889999999999999998865442111101 13567777777 7788999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhc-----------CC
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----------MH  296 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l-----------~~  296 (417)
                      ...+.........+++.+..++.+.++.++..+++.+..++......  ..+..   .+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~--~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--DVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH--HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            87543322344678888888899889999999999999998654221  11211   3456666666           33


Q ss_pred             -----------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864          297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (417)
Q Consensus       297 -----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (417)
                                 .++.++..|..+|+.++...+..   ++ ..+++.+...+.++ ++.+|..|++++++++.+.++....
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~  396 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP  396 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence                       34567889999999988644322   11 24678888888888 9999999999999999987765544


Q ss_pred             HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .. .++++.++..+.++++.||..|+|++++++..
T Consensus       397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            33 36899999999999999999999999998864

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=4.1e-16  Score=138.21  Aligned_cols=242  Identities=13%  Similarity=0.100  Sum_probs=190.0

Q ss_pred             HHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (417)
Q Consensus       112 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  191 (417)
                      ....+.++.|+..|.+++ +.++..|+++|+++..  +         ++++.|+.++.++++.++..++++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345667999999999988 9999999999999863  1         468889999999999999999999999875433


Q ss_pred             hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       192 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      ....      .++.|...+..++++.++..++++|..+....+    ......++.|..++.++++.++..++++|+++.
T Consensus        87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            2111      233344333377899999999999999985432    123467899999999999999999999999875


Q ss_pred             cCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (417)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  351 (417)
                      .           .+.++.|+.++.++++.++..|+++|+.+....+         ..++.|..++.++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2478999999999999999999999999864433         2467889999988 99999999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYE  409 (417)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l  409 (417)
                      |+++..           ...++.|+..+.+++  ++..|+++|+.+......+.+..+
T Consensus       216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~~~~~~L~~~  260 (280)
T 1oyz_A          216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDKTLLPVLDTM  260 (280)
T ss_dssp             HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCchhhhHHHHHH
Confidence            999862           357888999998754  899999999998654333333333

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=4.5e-15  Score=140.19  Aligned_cols=327  Identities=13%  Similarity=0.169  Sum_probs=247.5

Q ss_pred             cCHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCC----------------cHHHH-HHhCCHHHHHHhhcCCCCHHH
Q 014864           73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEV-IRSGVVPRFVEFLLREDYPQL  133 (417)
Q Consensus        73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~-~~~g~i~~Lv~lL~~~~~~~~  133 (417)
                      .+++.++..|+.  +|.+....++..|.++++....+                ..+.+ -+.+.++.|+.+|++.+ -.+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999986  57888888999998887754221                12233 25577999999999988 899


Q ss_pred             HHHHHHHHHHHhCCCch-hHHHHHhC-CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc
Q 014864          134 QFEAAWALTNIASGTSE-HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (417)
Q Consensus       134 ~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~  211 (417)
                      +..++.+|..++...++ ..+.+... ++++.|+.+|+++.+.+|..++..|.+|+.++++.++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999998777 56666644 99999999999999999999999999999999999999999999999999995


Q ss_pred             CCC---chhHHHHHHHHHhhhhcCCC-CCChhhhhchHHHHHHhhcCCCh------HHHHH---HHHHHHHhccCC----
Q 014864          212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDD------EVLTD---ACWALSYLSDGT----  274 (417)
Q Consensus       212 ~~~---~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~------~v~~~---a~~~l~~l~~~~----  274 (417)
                      ...   ...+...++.++.||.+.++ +.......+++|.|..++..+++      ....+   ++.++.-++...    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            433   24678999999999999874 33444457889999999875432      12333   455555555442    


Q ss_pred             --hHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcC---------ChHHHHHhhcCCCc
Q 014864          275 --NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK  341 (417)
Q Consensus       275 --~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~~  341 (417)
                        ..+...+.+.|+++.|+.++...  ...++..|+.+++.+.++++.....+.+..         ++..|+.++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              23456788899999999998876  568999999999999999987777665432         33334555666546


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHC----------CCH---HHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          342 KSIKKEACWTVSNITAGNREQIQAVIEA----------NII---GPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ..+|.+|+.++..+..++++....++..          +.+   ..|...+-+.|+----.|+.+|.++...
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~  450 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE  450 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC
Confidence            8999999999999999888655555532          111   1344555556665555688888888775

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.67  E-value=1.3e-15  Score=149.44  Aligned_cols=309  Identities=12%  Similarity=0.117  Sum_probs=224.8

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh-HH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-~~  153 (417)
                      ++.+.+.+.++++.++..|+..+..+....+.    ......+++.++.++++++ +.++..|+++|..++...... ..
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP----EITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH----HHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc----ccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhh
Confidence            44555556666777777777777776542111    1234567899999999887 899999999999998753322 11


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      ...-..++|.+..++.++++.++..++++|+.++..-..  .. .....++.+..++ .+.++.++..++.++..++...
T Consensus       319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhc
Confidence            112236788999999999999999999999999743211  11 1223678888888 6778999999999999888653


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                      +.  ......++|.+..++.+.+..++..++.++..++..-...   .....+++.+..++.++++.++..|+.+++.++
T Consensus       395 ~~--~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~  469 (588)
T 1b3u_A          395 GI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             CH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             CH--HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            21  1233568899999998889999999999999886421110   111235788888999999999999999999998


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHH
Q 014864          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (417)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~  393 (417)
                      ......   .....++|.+..++.++ +..+|..++++++.++...+..   .+...++|.|+..+.++++++|..++++
T Consensus       470 ~~~~~~---~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~Vr~~a~~~  542 (588)
T 1b3u_A          470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKS  542 (588)
T ss_dssp             HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHhCch---hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence            643322   12346788888888877 8999999999999998632221   1234689999999999999999999999


Q ss_pred             HHHhhCCCCHH
Q 014864          394 ISNATSGGTHE  404 (417)
Q Consensus       394 L~nl~~~~~~~  404 (417)
                      |+.+....+.+
T Consensus       543 l~~l~~~~~~~  553 (588)
T 1b3u_A          543 LQKIGPILDNS  553 (588)
T ss_dssp             HHHHGGGSCHH
T ss_pred             HHHHHHHhchh
Confidence            99998764443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.67  E-value=3e-15  Score=146.90  Aligned_cols=304  Identities=12%  Similarity=0.087  Sum_probs=229.8

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.+++.++++++.++..|+..+..++...............++|.+..++++.+ +.++..++++|+.++..-..  .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~  358 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence            36777888888999999999999999876542322222334567899999999888 89999999999998753111  1


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      . ....++|.+..+++++++.++..++.+++.++......  . .....++.+..++ .+.+..++..++.++..++..-
T Consensus       359 ~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~  433 (588)
T 1b3u_A          359 N-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             H-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence            1 12247889999999999999999999999887533211  1 1233577788877 7788999999999999988642


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                      +..  .....++|.+..++.+++..++..++.+++.++......   .....+++.+..++.++++.+|..++.+++.++
T Consensus       434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~  508 (588)
T 1b3u_A          434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            211  122457899999999999999999999999987543221   122348899999888889999999999999998


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                      ......   .....++|.+...+.++ ++.+|..++++++.++.. .++.    ....++|.|..++.+.+.++|..|+.
T Consensus       509 ~~~~~~---~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~  580 (588)
T 1b3u_A          509 EVCGQD---ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQE  580 (588)
T ss_dssp             HHHHHH---HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhcCHH---HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHHHHHH
Confidence            543221   23446899999999988 999999999999999863 2322    22356788888888899999999999


Q ss_pred             HHHHhh
Q 014864          393 AISNAT  398 (417)
Q Consensus       393 ~L~nl~  398 (417)
                      ++..+.
T Consensus       581 al~~l~  586 (588)
T 1b3u_A          581 ALTVLS  586 (588)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            998774

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.65  E-value=3.7e-15  Score=145.89  Aligned_cols=294  Identities=16%  Similarity=0.146  Sum_probs=188.5

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.+.+.|.++++.++..|+..+.++..   .+....     +++.+..++.+++ +.+|..|++++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~-----l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITEY-----LCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHH-----HHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHH-----HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            44555666677777777777777766531   222222     3677999999888 99999999999999987665432


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                         +.+.++.|..+|.++++.++..|+++|+.++.+.+.........+.+..|+..+ .+.++..+..++.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987653210001112356677777 4567778888888887776432


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~  310 (417)
                          ......+++.+..++++.++.|+..+++++.++...   +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                233467888999999999999999999999998742   223333333 235677776654 78899999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a  390 (417)
                      .++...+.....     .+..+. .+.+. +..+|..|++++.+++...  ++.     .+++.|..++.+.+.+++..+
T Consensus       308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~  373 (591)
T 2vgl_B          308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA  373 (591)
T ss_dssp             HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence            988644322110     011110 11122 3455555555555554321  111     133444455555555555555


Q ss_pred             HHHHHHhhCC
Q 014864          391 AWAISNATSG  400 (417)
Q Consensus       391 ~~~L~nl~~~  400 (417)
                      ++++++++..
T Consensus       374 v~aI~~la~~  383 (591)
T 2vgl_B          374 VRAIGRCAIK  383 (591)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5555555544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.63  E-value=3e-15  Score=142.39  Aligned_cols=310  Identities=13%  Similarity=0.078  Sum_probs=217.5

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCC-CcHHHHHHhCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhCCC-chh
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT-SEH  151 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~~~-~~~  151 (417)
                      ..+++.|.++++.+ ..++.++..++....+ ..+     .+++|.|++.+.++  + +.++..++.+|+.++... ++.
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~  165 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQ  165 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchh
Confidence            45677777777777 7777778777654211 122     35699999999988  6 899999999999998742 222


Q ss_pred             HHHHHhCCChhHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchHHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          152 TKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      ...... .+++.+..++.++  ++.++..++++++++...-..... .....-+++.+...+ .+.++.++..+++++..
T Consensus       166 ~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~  243 (462)
T 1ibr_B          166 LQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVK  243 (462)
T ss_dssp             TGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred             hHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Confidence            111121 4678888899887  799999999999997643221100 000111244555555 67789999999999999


Q ss_pred             hhcCCCCCChhhhh-chHHHHHHhhcCCChHHHHHHHHHHHHhccCChH---------------------HHHHHHHcCC
Q 014864          229 FCRGKPQPPFDQVS-PALPALAHLIHSNDDEVLTDACWALSYLSDGTND---------------------KIQAVIEAGV  286 (417)
Q Consensus       229 l~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~  286 (417)
                      ++...+..-..... .+++.+...+.+.++.++..+++.+..++.....                     ...... ..+
T Consensus       244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l  322 (462)
T 1ibr_B          244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYL  322 (462)
T ss_dssp             HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhc
Confidence            99865432223345 7888888888888999999999988888743210                     011111 235


Q ss_pred             hHHHHhhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864          287 FPRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       287 ~~~L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (417)
                      ++.++..+..       +++.++..|+.+|+.++......   ++ ..+++.+...+.+. ++.+|..|+++++.++.+.
T Consensus       323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~  397 (462)
T 1ibr_B          323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGP  397 (462)
T ss_dssp             HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSS
T ss_pred             cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCC
Confidence            6667777753       24678999999999998655421   22 24678888888888 9999999999999999864


Q ss_pred             H-HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          360 R-EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       360 ~-~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      . +.....+ ..++|.++..+.++++.+|..|+|+|++++...
T Consensus       398 ~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          398 EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             CTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             cHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            3 2221112 468999999999999999999999999998753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.60  E-value=2.9e-14  Score=139.49  Aligned_cols=296  Identities=19%  Similarity=0.160  Sum_probs=214.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.+..+.+.|.+++...+..++..+..+.... .+.      ..+.+.+++++++++ ..++..+...+.+++...++..
T Consensus        13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G-~d~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~~   84 (591)
T 2vgl_B           13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVG-KDV------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDMA   84 (591)
T ss_dssp             SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT-CCC------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHHH
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCh------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchHH
Confidence            45788899999999888888877666554432 221      224677888998888 8999999888888877444432


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                         .  -+++.+.+-|.++++.++..|+.+|+++.  .++....     .++.+.+++ .++++.+++.|++++..++..
T Consensus        85 ---~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~  151 (591)
T 2vgl_B           85 ---I--MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI  151 (591)
T ss_dssp             ---H--TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS
T ss_pred             ---H--HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHhh
Confidence               1  35678888899999999999999999986  3332222     356788888 788999999999999999986


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                      .|.  .....+.++.+..+|.++|+.|+..|+++|..++...++........+.+..|+..+.+.++..+...+++++.+
T Consensus       152 ~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l  229 (591)
T 2vgl_B          152 NAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY  229 (591)
T ss_dssp             SCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             Chh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence            543  222246889999999999999999999999999876542100001112356677777777888888999999988


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIKKE  389 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  389 (417)
                      +..++....     .+++.+..++++. ++.|+.+|++++..+...   +++..+.+.. .+.+.|+.++. +++++|..
T Consensus       230 ~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~  301 (591)
T 2vgl_B          230 NPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYV  301 (591)
T ss_dssp             CCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHH
T ss_pred             CCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHH
Confidence            865554332     4577888889988 999999999999998742   3333333222 35566665543 56677777


Q ss_pred             HHHHHHHhhC
Q 014864          390 AAWAISNATS  399 (417)
Q Consensus       390 a~~~L~nl~~  399 (417)
                      |+.+|..++.
T Consensus       302 aL~~l~~i~~  311 (591)
T 2vgl_B          302 ALRNINLIVQ  311 (591)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.60  E-value=2.3e-14  Score=147.31  Aligned_cols=317  Identities=17%  Similarity=0.203  Sum_probs=221.9

Q ss_pred             CHHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCch
Q 014864           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      .++.+++.+.++  ++..+..++.++..++..- .+..-.-.-..+++.+...+.+++ +..++..|+++|..++..-..
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            467778888888  8999999999999887542 111101112345777888888762 389999999999998863222


Q ss_pred             hHH-HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~-~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ... ......+++.+...+.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            110 011113577778888888999999999999999865543322333335677777777 677889999999999888


Q ss_pred             hcCC----------------C---CCCh--hhhhchHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          230 CRGK----------------P---QPPF--DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       230 ~~~~----------------~---~~~~--~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      +...                |   ....  .....++|.++..+..       ++..++..+..++..++....+   .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GG
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hh
Confidence            7641                1   1111  1225667777777742       3467888899999888754321   12


Q ss_pred             HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (417)
Q Consensus       282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (417)
                      +. .+++.+...+.++++.+|..|+++++.++.+.. ...... -..+++.++..+.++ ++.+|..|+|++++++...+
T Consensus       364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred             HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence            22 366777788888999999999999999998765 333322 245889999999988 99999999999999987433


Q ss_pred             HHH--HHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          361 EQI--QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       361 ~~~--~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ...  ...+ ..+++.|+..+.+. +.++..|+++|.+++..
T Consensus       441 ~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          441 EAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             GGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             hhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            211  0111 24677888888774 89999999999998853

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.59  E-value=9.1e-14  Score=117.53  Aligned_cols=188  Identities=22%  Similarity=0.212  Sum_probs=158.5

Q ss_pred             CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCC
Q 014864          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (417)
Q Consensus       158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~  237 (417)
                      .+.++.|+.+|.++++.++..++++|+.+..           .+.++.|+.++ .++++.++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            3678999999999999999999999998743           23688899999 67899999999999998863      


Q ss_pred             hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                          ...++.|..++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..|+.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3678999999999999999999999998853           2367889999999999999999999999852   


Q ss_pred             HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                              ...++.|..++.++ ++.+|..|+++|+.+..  +         ..++.|..++.++++.+|..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    24578899999888 99999999999999943  2         3577888899999999999999999999


Q ss_pred             hCCC
Q 014864          398 TSGG  401 (417)
Q Consensus       398 ~~~~  401 (417)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.59  E-value=2.2e-13  Score=114.17  Aligned_cols=185  Identities=23%  Similarity=0.226  Sum_probs=158.3

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~  238 (417)
                      +..+.++.+|.++++.++..|+++|+.+..           .+.++.|+..+ .++++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            567889999999999999999999998753           13678899999 78899999999999998853       


Q ss_pred             hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChH
Q 014864          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (417)
Q Consensus       239 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~  318 (417)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|+.++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2578999999999999999999999998753           2367889999999999999999999999853    


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       319 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                             ...++.|..++.++ ++.+|..|+++|+++.  .+         ..++.|..++.++++.+|..|.++|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999993  23         25778888899999999999999999875


Q ss_pred             C
Q 014864          399 S  399 (417)
Q Consensus       399 ~  399 (417)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.58  E-value=1.4e-13  Score=116.40  Aligned_cols=188  Identities=22%  Similarity=0.186  Sum_probs=158.3

Q ss_pred             hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (417)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (417)
                      .+.++.|+..|.+++ +.++..|+++|+.+..           ..+++.|+.++.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            456999999999888 9999999999998764           2678999999999999999999999999852      


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  274 (417)
                           .+.++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888988 78899999999999998864          3578999999999999999999999999842  


Q ss_pred             hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (417)
                               ...++.|..++.++++.++..|+.+|+.+..           ...++.|..+++++ ++.+|..|..+|++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2367889999999999999999999999852           13467788899888 99999999999999


Q ss_pred             HhcCC
Q 014864          355 ITAGN  359 (417)
Q Consensus       355 l~~~~  359 (417)
                      +....
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            97643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.56  E-value=1.8e-13  Score=114.76  Aligned_cols=184  Identities=22%  Similarity=0.204  Sum_probs=158.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      +..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+...      
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------   75 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence            45889999999999 9999999999998764           25789999999999999999999999998421      


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                           ..++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..   
T Consensus        76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 3678888988 77899999999999999854          2578899999999999999999999999853   


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (417)
                              ...++.|..++.++++.++..|+.+|+.+.  .+         ..++.|..++.++ ++.+|..|..+|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    246788999999999999999999999984  22         2467788889888 999999999999987


Q ss_pred             h
Q 014864          356 T  356 (417)
Q Consensus       356 ~  356 (417)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.55  E-value=1.9e-13  Score=140.49  Aligned_cols=313  Identities=17%  Similarity=0.162  Sum_probs=203.2

Q ss_pred             HHHHHhhhc-------CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q 014864           75 LPVMVAGVW-------SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (417)
Q Consensus        75 l~~l~~~l~-------s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~  147 (417)
                      ++.+++.+.       ++++..+..|+..+..++.......    + ..+++.+...+.+++ ..+|..|+++|+.++.+
T Consensus       323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~----~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~  396 (876)
T 1qgr_A          323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEG  396 (876)
T ss_dssp             HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG----H-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSS
T ss_pred             hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh----H-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcC
Confidence            455666664       2356788888888888765421111    1 235777788888877 89999999999999987


Q ss_pred             Cc-hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH--HHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864          148 TS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATW  224 (417)
Q Consensus       148 ~~-~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~  224 (417)
                      .. +....... .+++.++..+.++++.++..|+|+|++++...+...  ... -..+++.++..+ .+. +.++..++|
T Consensus       397 ~~~~~~~~~~~-~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l-~~~-~~v~~~a~~  472 (876)
T 1qgr_A          397 PEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGL-SAE-PRVASNVCW  472 (876)
T ss_dssp             SCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHT-TSC-HHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHH-cCC-HHHHHHHHH
Confidence            54 33333332 578999999999999999999999999986533210  000 112567778887 443 888999999


Q ss_pred             HHhhhhcCCC--------------CCChhhhhchHHHHHHhhcCC---ChHHHHHHHHHH--------------------
Q 014864          225 TLSNFCRGKP--------------QPPFDQVSPALPALAHLIHSN---DDEVLTDACWAL--------------------  267 (417)
Q Consensus       225 ~l~~l~~~~~--------------~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~l--------------------  267 (417)
                      ++.+++....              .........++|.|..++...   +..++..++.++                    
T Consensus       473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~  552 (876)
T 1qgr_A          473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL  552 (876)
T ss_dssp             HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHH
Confidence            9999986421              111223456777777776543   223444444443                    


Q ss_pred             ------------------------------------HHhccCCh-HHHHHHHHcCChHHHHhhcCCCC--hhhHHHHHHH
Q 014864          268 ------------------------------------SYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRT  308 (417)
Q Consensus       268 ------------------------------------~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~~~--~~v~~~a~~~  308 (417)
                                                          ..++.... ....... ..+++.++..+.+.+  +.++..++.+
T Consensus       553 ~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~  631 (876)
T 1qgr_A          553 VIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMA  631 (876)
T ss_dssp             HHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHHHH
Confidence                                                33333222 1111111 125667777787664  4788999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHH
Q 014864          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDI  386 (417)
Q Consensus       309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v  386 (417)
                      ++.++..........+. .+++.+...+.+..++.+|..|+++++.++......+...+. .+++.|+..+.+  .+.++
T Consensus       632 l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~  709 (876)
T 1qgr_A          632 VSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSV  709 (876)
T ss_dssp             HHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGG
T ss_pred             HHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHh
Confidence            99998643322221222 367888888876536889999999999998632223333332 578888888886  46789


Q ss_pred             HHHHHHHHHHhhCC
Q 014864          387 KKEAAWAISNATSG  400 (417)
Q Consensus       387 ~~~a~~~L~nl~~~  400 (417)
                      +..+++++++++..
T Consensus       710 ~~~~~~~l~~i~~~  723 (876)
T 1qgr_A          710 KPQILSVFGDIALA  723 (876)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999763

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.55  E-value=6.7e-14  Score=143.63  Aligned_cols=315  Identities=14%  Similarity=0.176  Sum_probs=216.0

Q ss_pred             CHHHHHhhhcC-------CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        74 ~l~~l~~~l~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      .++.++..+..       +++..+..|...+..++........     ..+++.+.+.+.+.+ ...+..|+++|+.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            35666666653       2357888888888887653211212     234777778888877 7999999999999998


Q ss_pred             CCc-hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH--HHHHHhcCCHHHHHHHhcCCCchhHHHHHH
Q 014864          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (417)
Q Consensus       147 ~~~-~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~  223 (417)
                      +.. +.....+. .+++.++..+.++++.++..++|+++.++......  .... -..+++.++..+ .+. +.++..++
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l-~~~-~~v~~~a~  474 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGL-QDH-PKVATNCS  474 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHH-TSC-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHh-ccC-hHHHHHHH
Confidence            743 43333443 57899999999999999999999999998432110  0000 112467788888 444 88999999


Q ss_pred             HHHhhhhcCCC----CCChhhhhchHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-
Q 014864          224 WTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-  296 (417)
Q Consensus       224 ~~l~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-  296 (417)
                      |++.+++....    .........+++.|...+.+.+  +.++..++.+++.++..........+. .+++.++..+.. 
T Consensus       475 ~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~  553 (861)
T 2bpt_A          475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQT  553 (861)
T ss_dssp             HHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHH
Confidence            99999987532    1122344677888888887543  789999999999987654432222222 245555555542 


Q ss_pred             --------------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCHH
Q 014864          297 --------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNRE  361 (417)
Q Consensus       297 --------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~L~nl~~~~~~  361 (417)
                                    ....++..++.+|++++.......... -..+++.+...+++. +. .++..++++++.++.....
T Consensus       554 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~  631 (861)
T 2bpt_A          554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGK  631 (861)
T ss_dssp             TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGG
T ss_pred             HhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhh
Confidence                          134577889999999987655422211 125677888888887 66 8999999999999863222


Q ss_pred             HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       362 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      .....+. .++|.|+..+.+++++++..|+.+++.++....
T Consensus       632 ~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~  671 (861)
T 2bpt_A          632 GFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLE  671 (861)
T ss_dssp             GGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred             hHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence            2222222 488899999988889999999999998876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.55  E-value=2.5e-14  Score=146.81  Aligned_cols=316  Identities=10%  Similarity=0.126  Sum_probs=217.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH--H
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--K  153 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~--~  153 (417)
                      +.+.+.+.+.++..+..|+.++..++...........+ ..+++.++..+.+++ +.++..++|+++.++..-....  .
T Consensus       372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            34445566888999999999999987543112222222 247899999999887 9999999999999986321100  0


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chHHHHHHhcCCHHHHHHHhcC-CCchhHHHHHHHHHh
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLS  227 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l~  227 (417)
                      ... ..+++.++..+.++ +.++..++++|.+++...     ......+  ..+++.|+..+.. +.++.++..+++++.
T Consensus       450 ~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          450 QHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            011 14577888888765 899999999999997431     1121111  1246777888843 334789999999999


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhcCC---------------ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh
Q 014864          228 NFCRGKPQPPFDQVSPALPALAHLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (417)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~---------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  292 (417)
                      .++...+..........+|.++..+...               ...++..++.++..++............ .+++.++.
T Consensus       526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T 2bpt_A          526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence            9998765433344456677777666421               3457788899998887654332211222 36777888


Q ss_pred             hcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 014864          293 FLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI  371 (417)
Q Consensus       293 ~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  371 (417)
                      .+.+.+. .++..++.+++.++..........+ ..++|.+...+.+. ++.++..++++++.++....+...... ..+
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l  681 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence            8887776 8999999999999865443322222 24788899999877 888999999999999864333333333 257


Q ss_pred             HHHHHHHhccCC--HHHHHHHHHHHHHhhCCC
Q 014864          372 IGPLVALLENAE--FDIKKEAAWAISNATSGG  401 (417)
Q Consensus       372 i~~L~~~l~~~~--~~v~~~a~~~L~nl~~~~  401 (417)
                      ++.++..+.+.+  +++|..++.+++.++...
T Consensus       682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~  713 (861)
T 2bpt_A          682 MNVLAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence            888888888764  889999999999988754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.55  E-value=4.8e-13  Score=131.41  Aligned_cols=288  Identities=16%  Similarity=0.128  Sum_probs=217.1

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.+.+.|.++++.++..|++++.++..    +   .+. ..+++.+..+|.+.+ +.+|..|+.++.++....++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            45677777788888888888888888742    1   122 345888999999988 99999999999999987665432


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC--------------CCchhHH
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML  219 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--------------~~~~~~~  219 (417)
                           +.++.+..++.+.++.++..|+++|+.++..++.....+  ...++.++.+|.+              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 678888899999999999999999999998766432222  2467888877742              3478888


Q ss_pred             HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc------CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (417)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~  293 (417)
                      ..++.++..++..+|.    .....++.|..++.      +.+..+...+++++..+... +..    .. .+++.|..+
T Consensus       252 ~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~~-~a~~~L~~~  321 (618)
T 1w63_A          252 VRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----RV-LAINILGRF  321 (618)
T ss_dssp             HHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----HH-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----HH-HHHHHHHHH
Confidence            8999999999876431    22334455555542      23567889999999988542 221    11 256788888


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Q 014864          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (417)
Q Consensus       294 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (417)
                      +.++++.++..|+.+|+.++...+...     ....+.++..+.++ +..+|..|..+|..++....  +.     .+++
T Consensus       322 L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~-----~iv~  388 (618)
T 1w63_A          322 LLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IR-----GMMK  388 (618)
T ss_dssp             HTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--TH-----HHHH
T ss_pred             HhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HH-----HHHH
Confidence            999999999999999999997544322     23567888999988 99999999999999987421  12     2457


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          374 PLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       374 ~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      .|...+.+.+.+++..++.+|+.++..
T Consensus       389 eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          389 ELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            788888889999999999999999985

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.54  E-value=9.8e-14  Score=131.92  Aligned_cols=277  Identities=17%  Similarity=0.192  Sum_probs=194.1

Q ss_pred             CHHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCch
Q 014864           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      .++.+++.+.++  ++..+..|+..+..++........... -..+++.++..++++. ++.++..|+++++++...-..
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888  899999999999998764211111111 1236888999999872 389999999999997653221


Q ss_pred             hHH-HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~-~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..+
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence            110 001112466777778889999999999999999865442111111114566667777 667889999999999998


Q ss_pred             hcCC---------------C--CCChh----hhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          230 CRGK---------------P--QPPFD----QVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       230 ~~~~---------------~--~~~~~----~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      +...               +  .....    ....++|.++..+...       +..++..++.+|..++....+   .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~  363 (462)
T 1ibr_B          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI  363 (462)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---TH
T ss_pred             HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HH
Confidence            8642               0  01111    1255677777777432       357889999999998764432   12


Q ss_pred             HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      + ..+++.+...+.++++.++..|+.++|.++.+.. ..... .-..++|.++..+.++ ++.||..|+|+|++++..
T Consensus       364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            2 2367888888999999999999999999998765 21111 1247899999999998 999999999999999863

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.52  E-value=1.3e-12  Score=128.26  Aligned_cols=292  Identities=16%  Similarity=0.116  Sum_probs=219.4

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      .....+++.+.+++...+..+.-.+..++..  ++..-.+    +++.|.+-|++++ +.++..|+++|+++..  ++..
T Consensus        70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~  140 (618)
T 1w63_A           70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC  140 (618)
T ss_dssp             GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH
Confidence            4667888999999999998888888877643  2221112    3778888889888 8999999999999984  4322


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                          + ..++.+..++.++++.++..|+.+++++....|+..     .+.++.+..++ .+.++.++..|++++..++..
T Consensus       141 ----~-~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          141 ----R-DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             ----H-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred             ----H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence                2 567888999999999999999999999997666432     24677777777 788999999999999999976


Q ss_pred             CCCCChhhhhchHHHHHHhhcC---------------CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC--
Q 014864          233 KPQPPFDQVSPALPALAHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--  295 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~--  295 (417)
                      .+.. .......+|.++.+|..               .++..+..++.+++.++..+++...     .+.+.|..++.  
T Consensus       210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~  283 (618)
T 1w63_A          210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT  283 (618)
T ss_dssp             HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred             ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence            4321 22345677777776642               4788889999999999877654322     34455555442  


Q ss_pred             ----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 014864          296 ----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI  371 (417)
Q Consensus       296 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  371 (417)
                          +.+..+...|++++..+... +...     ..+++.|..++.++ ++.+|..|+.+|+.++...+..    +. ..
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~----~~-~~  351 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNA----VQ-RH  351 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHH----HG-GG
T ss_pred             ccccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHH----HH-HH
Confidence                23457888999999887542 2111     13567888889988 9999999999999998754542    22 35


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          372 IGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       372 i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      .+.++.++.+++..+|..|+.+|..++...+
T Consensus       352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n  382 (618)
T 1w63_A          352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNN  382 (618)
T ss_dssp             HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence            6788999999999999999999999988764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.42  E-value=1.8e-12  Score=137.92  Aligned_cols=273  Identities=14%  Similarity=0.121  Sum_probs=199.9

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .++.+++.+.+.|++.+..|...|.+.+... ....+.-....+++.+++.|.+.+ +.+|..|+.+|+.++...++  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence            4789999999999999999999998876542 111111112345888999998877 89999999999999986444  1


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH------HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~  227 (417)
                      .+  ..+++.|+..+.++++.++..++.+|+.++......      ... .....++.|+..+.++++..++..++.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  146788888888888899999999999998543321      111 122367888888844578899999999999


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-hhhHHHHH
Q 014864          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPAL  306 (417)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~v~~~a~  306 (417)
                      .++...+..........++.+...+.++++.++..++.+++.++....+.   ++ ..+++.++..+.+.+ +.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99975433222345778889999999889999999999999998765432   12 235777777776543 56788899


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       307 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (417)
                      .+++.++...+..... .-..+++.++..+.+. ++.+|..++++++.++...
T Consensus       236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC
Confidence            9999998654432111 1236889999999988 8999999999999998743

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.35  E-value=1.3e-11  Score=131.37  Aligned_cols=318  Identities=13%  Similarity=0.147  Sum_probs=216.1

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc----HHHHHHhCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhCCC
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT  148 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~  148 (417)
                      .++.++..+.++++.++..|+.++..++..-..+.    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            35677777788888889989999988876532220    0111223469999999984 65 899999999999998532


Q ss_pred             chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      +....... ...++.|+..+.++++.++..|+.+|+.++...+.   .+ -...++.++..+....+...+..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            21111111 24567778888888999999999999999965442   11 223577888887554445677788888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC------------
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------  296 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~------------  296 (417)
                      ++...+..-......++|.+...+.+++++++..+++++..++....+.....+. .+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccc
Confidence            8876443222345788999999999889999999999998887643322111121 244555444421            


Q ss_pred             -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864          297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (417)
Q Consensus       297 -------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  351 (417)
                                               ..+.+|..|+.+++.++...+.....+ -..++|.+...+.+. ++.+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     124678899999999987544333322 346788888888877 89999999998


Q ss_pred             HHHHhc--CC-----------------HHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          352 VSNITA--GN-----------------REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       352 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      +..++.  +.                 ......++ ..+++.+...+.+.++.+|..++.+|+.++...
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~  465 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL  465 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence            888764  11                 11122222 346777777799999999999999999987653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.35  E-value=8.5e-10  Score=108.04  Aligned_cols=295  Identities=15%  Similarity=0.164  Sum_probs=203.1

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      .....+++.+.+++...+..+.-.+..++...  +..-.+    +++.+.+=|++++ +.++-.|+.+|+++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--SELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--HHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--cHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            46789999999999999999988888876432  211112    2667777888888 9999999999999965  4433


Q ss_pred             HHHHhCCChhHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          153 KVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      +     ..++.+.+++  .+.++.++..|+.++.++....|+.   +...+.++.+..++ .+.++.++..|+.++..++
T Consensus       145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            2     5678889999  8899999999999999998766542   22246888999999 7889999999999999998


Q ss_pred             cCCCCCChhhhhchHHHHH----HhhcCC-------------ChHHHHHHHHHHHHhccCC-hHHHHH-------HH---
Q 014864          231 RGKPQPPFDQVSPALPALA----HLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQA-------VI---  282 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~----~ll~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~-------~~---  282 (417)
                      ...+.    .....+|.++    +++...             ++..+...+..+..++... ++....       ++   
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~  291 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA  291 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            76532    1122222222    222110             3445555555555544321 111110       00   


Q ss_pred             -----------------------------------HcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 014864          283 -----------------------------------EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (417)
Q Consensus       283 -----------------------------------~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  327 (417)
                                                         -..++..|..++.++++.++-.|+.+|..++...+. .. .+ ..
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~  368 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KT  368 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HT
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HH
Confidence                                               002345666777777788888888888888766542 11 12 24


Q ss_pred             ChHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          328 ALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       328 ~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ..+.++..+. ++ +..+|..++.+|..++.  +.++..     ++..|...+...+.+++.+++.+++.++..
T Consensus       369 ~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          369 HIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             THHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            5677888888 77 88999999999999874  444443     455777888888899999999999988753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.29  E-value=7e-10  Score=86.47  Aligned_cols=218  Identities=15%  Similarity=0.161  Sum_probs=180.4

Q ss_pred             hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC
Q 014864          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (417)
Q Consensus       157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~  236 (417)
                      +..++..++.+|.++-..++.+|+..+.+++..-++..+.     .+..|+.++..+...+....+..+++.++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            3457888999999999999999999999999888876555     356788888788888898999999999998754  


Q ss_pred             ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~  316 (417)
                        ..+.+.+|.+..-..-.|++++.+...+|..++..++....     +++.-+..++.+++..-+..|+..|+.+..+.
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              56688899999888888999999999999999988876544     35677899999999888888999998888776


Q ss_pred             hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014864          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN  396 (417)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~n  396 (417)
                      .....     -.+|.|+.+|.+. +.-||..|.-+|.+++..++..+..      +..-+.-+++....+++....+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            65443     5689999999999 9999999999999999988875443      2334556777788899999999988


Q ss_pred             hhCC
Q 014864          397 ATSG  400 (417)
Q Consensus       397 l~~~  400 (417)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.24  E-value=1.4e-10  Score=115.02  Aligned_cols=215  Identities=16%  Similarity=0.115  Sum_probs=157.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHH-HHhhCCCCHHHHHHHHHHHHHhhCC-CchH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGD-SPRC  193 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~  193 (417)
                      .++| +++.|++++ +..|..|+++|++++. ++..+..+...|++..+ ..+|.+++.+++..|+++|+||+.+ ++..
T Consensus        35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3444 567789988 8999999999999998 47888888888888765 4578889999999999999999954 5678


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (417)
Q Consensus       194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  273 (417)
                      ...+...|++++|+.++.         .....+..+........ ......+           .++...++.+|.+|+..
T Consensus       112 ~~~l~~~~il~~L~~~l~---------~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~  170 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAK---------AVLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA  170 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHH---------HHHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHH---------hhHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence            888999999999999982         22222222221110000 0001111           13445677788888888


Q ss_pred             ChHHHHHHHHcCChHHHHhhcCCC---ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChH---HHHHhhcCCCchhHHHH
Q 014864          274 TNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP---CLLNLLSGNYKKSIKKE  347 (417)
Q Consensus       274 ~~~~~~~~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~v~~~  347 (417)
                      +++....+...+.++.|+..|.+.   ...++..|+.+|..++..++...+.+.+.+...   .+..+.. . +...+..
T Consensus       171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~l  248 (684)
T 4gmo_A          171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVM  248 (684)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHH
T ss_pred             CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHH
Confidence            888777888888999999988543   357999999999999999999888888776543   3333333 3 4456788


Q ss_pred             HHHHHHHHh
Q 014864          348 ACWTVSNIT  356 (417)
Q Consensus       348 a~~~L~nl~  356 (417)
                      +|+.|.|+.
T Consensus       249 a~giL~Ni~  257 (684)
T 4gmo_A          249 ACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhHh
Confidence            999999985

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.23  E-value=9.1e-10  Score=109.34  Aligned_cols=273  Identities=14%  Similarity=0.135  Sum_probs=194.2

Q ss_pred             CHHHHHhhhc---CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 014864           74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN  143 (417)
Q Consensus        74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~  143 (417)
                      ++..+-+.|.   ++++.++.-|+..+.-+-.+..+         .++..|...|.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4556666666   56778888888888876554321         13667777776543       36788899999999


Q ss_pred             HhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHH
Q 014864          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (417)
Q Consensus       144 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~  223 (417)
                      +..|+...       .+++.|..++.+++..+++.|+.+||.+..+.... +      ++..|++.+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHH
Confidence            87764321       35677888888777778889999999885443311 1      3566777765667889999999


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHH--hccCChHHHHHHHHcCChHHHHhhc-CCCCh
Q 014864          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEFL-MHPSP  299 (417)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~  299 (417)
                      .+|+.+..+.+        ..++.++..|. +.++.++..++.+++-  ...++...         ++.|+..+ .+.+.
T Consensus       530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            99998876643        34566666665 4578888887776653  33444433         34344443 45677


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l  379 (417)
                      .+|..|+.+||.+..+.++         .++.++.+|.+..++.+|..|+++|+.++.+++..       .++..|..++
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence            8999999999999888753         35566665554449999999999999999876531       2566777888


Q ss_pred             ccCCHHHHHHHHHHHHHhhCCCC
Q 014864          380 ENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       380 ~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      ++.+..|+..|+.+|+.+..+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999987643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.08  E-value=8.5e-09  Score=100.97  Aligned_cols=218  Identities=16%  Similarity=0.150  Sum_probs=154.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHH----HhhCC-------------CCHHHHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV----KLLYS-------------PSDDVREQ  178 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~----~ll~~-------------~~~~i~~~  178 (417)
                      ++++.+.++|.+.+ +.++..|+.++..++..++....     ..+|.++    +++..             +++-.+..
T Consensus       187 ~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~  260 (621)
T 2vgl_A          187 DWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK  260 (621)
T ss_dssp             SCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred             hHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence            78999999998877 99999999999999986554221     2344444    33321             16778888


Q ss_pred             HHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCC--------c--hhHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 014864          179 AVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQP--------K--LSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (417)
Q Consensus       179 a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~--------~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  247 (417)
                      .+..|+.++.. ++..++.+.+  .+..++..+...+        +  ..+...++.++..+..     .......++..
T Consensus       261 il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~  333 (621)
T 2vgl_A          261 LLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQ  333 (621)
T ss_dssp             HHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHH
Confidence            99999998863 4444444333  3444444332211        2  3777888888888752     23445678888


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864          248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (417)
Q Consensus       248 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  326 (417)
                      |..++.+++++++.-++.++..++...+.. . ++ ......++..+. +++..++..++.++..++.  +.....    
T Consensus       334 L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~----  404 (621)
T 2vgl_A          334 LGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ----  404 (621)
T ss_dssp             HHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH----
Confidence            999999899999999999999998765321 1 22 236788888898 8899999999999999984  334443    


Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                       ++..|...+.+. +..++..++..++.++.
T Consensus       405 -Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          405 -IVAEMLSYLETA-DYSIREEIVLKVAILAE  433 (621)
T ss_dssp             -HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence             355677777777 88888888888888874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.08  E-value=4.9e-10  Score=111.13  Aligned_cols=195  Identities=15%  Similarity=0.102  Sum_probs=150.8

Q ss_pred             CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHH-HHHhhcCCChHHHHHHHHHHHHhccC-ChHHHH
Q 014864          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQ  279 (417)
Q Consensus       202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~  279 (417)
                      .+.++++.| +++++..+..|+++|++|+.+..........++++. +..+|.+++.+|+..++++|.||+.. ..+...
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            466788888 889999999999999999975433334444667665 56788888999999999999999865 356667


Q ss_pred             HHHHcCChHHHHhhcCCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC
Q 014864          280 AVIEAGVFPRLAEFLMHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  338 (417)
                      .++..|+++.|..++....                     +.+...++.+|.+++.+++.....+...+.++.++..|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            7899999999998875210                     1244567889999999998888888888999999998854


Q ss_pred             C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCH---HHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          339 N--YKKSIKKEACWTVSNITAGNREQIQAVIEANII---GPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       339 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i---~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                      .  ....++..|+.+|.+++..+++.++.+.+.+..   ..+..+ ...+...+..+++.|.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            3  145799999999999999999999988876643   333333 3344456778899999974

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=1.4e-09  Score=93.68  Aligned_cols=191  Identities=14%  Similarity=0.217  Sum_probs=146.1

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014864          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (417)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (417)
                      .+...+ .+.+...+..++..|..+....+.........+++.|...+. +.+..++..++.+++.++..-.........
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            466777 788999999999999999886332222234577888999995 889999999999999998543222222222


Q ss_pred             cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHH
Q 014864          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQ  362 (417)
Q Consensus       284 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~  362 (417)
                       .+++.++..+.+++..++..|..+|..++.....  .     .+++.+...+++. ++.+|..++..|+.+... .++.
T Consensus        98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence             3789999999999999999999999999875431  1     3578899999988 999999999999997653 2331


Q ss_pred             -HHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          363 -IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       363 -~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                       ....+. .++|.|+.++.+.++++|..|..+++.++.....+.+
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence             112222 5899999999999999999999999999876554433

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.06  E-value=1.3e-07  Score=73.94  Aligned_cols=215  Identities=17%  Similarity=0.156  Sum_probs=168.3

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.+..++..|..+-+.+|..|+..+..+...- ++...-+     +..|+.+++.+.......+.+++++.++...|+..
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            45788899998888999999999999886442 3333333     66777787766557888899999999998777655


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      .     +.+|.+..-..-.+++++....++|..|+..+|..-..     ++..+..++ .++|..-+..++.++..+...
T Consensus       106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~sml-tskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSML-SSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHT-SCSSHHHHHHHHHHHHTCCTT
T ss_pred             H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHh-cCCChHHHHHHHHHHHHHhcc
Confidence            4     56788888777789999999999999999888864333     566788888 677777777777777766654


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                          .+....+.+|.|..+|++.|.-|+..+..+|.+++..++....      ++...+.-+.+.+..+....-..|+.+
T Consensus       175 ----~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          175 ----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             ----THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             ----CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence                4667789999999999999999999999999999988876332      344456677888887887777777777


Q ss_pred             hc
Q 014864          313 VT  314 (417)
Q Consensus       313 ~~  314 (417)
                      +.
T Consensus       245 ~l  246 (253)
T 2db0_A          245 LL  246 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.04  E-value=1.8e-08  Score=90.18  Aligned_cols=276  Identities=13%  Similarity=0.076  Sum_probs=164.4

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ....+++.+.++|...+...--.+..++... ++.+  +    ++..|.+=+++++ +-++-.|+++|+++...  +..+
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence            3567788999999999998888887775442 2322  2    4778888889988 99999999999999874  3332


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                           .+.+.+.+.+.+.++-|+..|+.+...+....|+..     .++++.+-.++ .+.++.++.+|+.++..++..+
T Consensus       139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence                 345667788899999999999999999998887632     36888888888 7788999999999999998753


Q ss_pred             CCCChhhhhchHHHHHHhhcCC---ChHHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                              ...+..++..+...   ++-.+...+..+..++..+ +.     ....+++.+.++|++.++.|.-.|+++|
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    11333344444332   4555555666665555443 12     2235778899999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE  389 (417)
Q Consensus       310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  389 (417)
                      ..+...+..    .. ..++..+..++.++ ++.+|..|...|..++...|...+.     .-..+.++++++|..+..-
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            887542221    11 24566777888888 9999999999999999877765432     3445677888888777666


Q ss_pred             HHHHH
Q 014864          390 AAWAI  394 (417)
Q Consensus       390 a~~~L  394 (417)
                      |+.+|
T Consensus       344 Aittl  348 (355)
T 3tjz_B          344 AITTL  348 (355)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            65555

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.03  E-value=8.2e-08  Score=95.54  Aligned_cols=274  Identities=16%  Similarity=0.134  Sum_probs=189.6

Q ss_pred             HHHHHhhhcCCC--------hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           75 LPVMVAGVWSND--------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        75 l~~l~~~l~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      +..|.+.|.+++        +.++..|+..|.....+..++        .+++.|...|.+++ ...+..|+.+|+.+-.
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v  501 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence            445555555443        556666666666554443222        23777888888777 6777789999998855


Q ss_pred             CCchhHHHHHhCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864          147 GTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (417)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (417)
                      |+...       .++..|+..+ ...+..++..++.+|+.+....++         .++.++..+..+.++.++..++.+
T Consensus       502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            53321       2344555544 356889999999999999877664         567788888677888888888888


Q ss_pred             HhhhhcCCCCCChhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHH
Q 014864          226 LSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLI  303 (417)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~  303 (417)
                      ++--+.+..+      ...++.|+..+ .+.+..++..|+.+|+.+..+.++         .++.++.+| .+.++.+|.
T Consensus       566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~  630 (963)
T 4ady_A          566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC  630 (963)
T ss_dssp             HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred             HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence            7755554322      23444444443 455788999999999988766542         456676654 567899999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHCCCHHHHHHHh
Q 014864          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQAVIEANIIGPLVALL  379 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~~l  379 (417)
                      .|..+||.++.+++...       +++.|..++.+. +..||..|+.+|+.+..++.+.    +.     ++...|....
T Consensus       631 gAalALGli~aGn~~~~-------aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva-----~~l~~L~~~~  697 (963)
T 4ady_A          631 GTAFALGIACAGKGLQS-------AIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVA-----DINKNFLSVI  697 (963)
T ss_dssp             HHHHHHHHHTSSSCCHH-------HHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcHH-------HHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHH-----HHHHHHHHHH
Confidence            99999999998887422       356777888888 9999999999999999864432    22     2344556666


Q ss_pred             cc--CCHHHHHHHHHHHHHhhCCC
Q 014864          380 EN--AEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       380 ~~--~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .+  .++..+..|..+.+-+-.++
T Consensus       698 ~dk~~d~~~~fga~iAqGll~aG~  721 (963)
T 4ady_A          698 TNKHQEGLAKFGACVAQGIMNAGG  721 (963)
T ss_dssp             HCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred             hcccccHHHHHHHHHHHHHHhcCC
Confidence            53  46788888888888775543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.91  E-value=8.7e-08  Score=82.36  Aligned_cols=185  Identities=13%  Similarity=0.084  Sum_probs=141.2

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      +.+.+.+.+.++..+..|+..|..++.+.+ ...... -..+++.|...+. +.+ ..++..|+.+++.++.+-......
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence            357888899999999999999999987621 110000 1234788888885 777 899999999999999742222222


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-  233 (417)
                      .+. .++|.++..+.+++..+++.+..+|..++...+ ..      ..++.+...+ ++.++.++..++..+..+.... 
T Consensus        95 ~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence            222 478999999999999999999999999987544 21      1467788888 6778999999999999965543 


Q ss_pred             CC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864          234 PQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (417)
Q Consensus       234 ~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  272 (417)
                      +. ........++|.+..++.+.+++++..+..+++.++.
T Consensus       166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            32 2334557899999999999999999999999998863

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.89  E-value=2.8e-07  Score=75.27  Aligned_cols=187  Identities=14%  Similarity=0.136  Sum_probs=150.3

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      +.+..+..+|+..|+.++..|+.++.++++.- +.......-..+++.++.++.+.+ ..+...|++||..+..+.|-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            35688899999999999999999999999763 333444444556999999999988 8999999999999999876555


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ..+..  .+.+|..++.++++-++..++..++.+---.+ .+      +++..+..++ .+.|..++..++.++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            55553  57788999999999999999999999942222 22      2467788888 999999999999999999986


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  273 (417)
                      ..  +......++.-+-.+|.+.|+.++..|+.++-.+...
T Consensus       181 S~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          181 SA--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             CS--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             cC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            42  2334456666677888999999999999999888754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.3e-08  Score=87.61  Aligned_cols=193  Identities=11%  Similarity=0.082  Sum_probs=141.0

Q ss_pred             HHHHhcCCCchhHHHHHHHHHhh-hhcCCCCCC--hhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh-HHHH-
Q 014864          206 LLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPP--FDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  279 (417)
Q Consensus       206 L~~ll~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~-~~~~-  279 (417)
                      +...+ .+.+..-+..++..|.. ++.+.+...  ......++..|.+.+ .+.+..++..++.+++.++.+-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44555 78899999999999999 886543322  222356688888889 67899999999999999985322 1111 


Q ss_pred             HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (417)
                      .... .+++.++..+.+..+.++..+..++-.++...+.......-..+++.|+..+++. ++.+|..++.+|+.++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            1222 2688999999999999999999998888864421100000012567888999998 9999999999999998633


Q ss_pred             H---HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          360 R---EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       360 ~---~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      +   ......+...++|.|..++.+.++.+|..|..+++.++...
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            2   44444443579999999999999999999999999987543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.86  E-value=7.9e-08  Score=86.09  Aligned_cols=243  Identities=12%  Similarity=0.078  Sum_probs=142.3

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      -..+.+.+.++++++-++-.|++.+.++..   ++..+.     +.+.+.+.|.+.+ +.++..|+.+...+....|+..
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v  174 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV  174 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH
Confidence            467888999999999999999999999964   333433     3777888999998 9999999999999998777654


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--chhHHHHHHHHHhhhh
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFC  230 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~~a~~~l~~l~  230 (417)
                      +     +.++.+-.++.+.++-++.+|+.+|..+...+..         .+..++..+....  ++-.+...+..+..++
T Consensus       175 ~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~  240 (355)
T 3tjz_B          175 K-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL  240 (355)
T ss_dssp             H-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred             H-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence            3     6889999999999999999999999999875532         3445565553422  4555555555555555


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~  310 (417)
                      ..+   ........++.+..+|++.++.|...++.++..+...+..    .. ..++..|..++.++++.++-.|++.|.
T Consensus       241 ~~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          241 EDE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             ccc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            443   1123356778888889999999999999999998653322    12 234566777888899999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      .++...+...+     ..-.-+..++.++ +..+.-.|.-+|
T Consensus       313 ~l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl  348 (355)
T 3tjz_B          313 KVAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL  348 (355)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence            99987775543     2234467778877 777766665554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.81  E-value=1.4e-07  Score=76.95  Aligned_cols=188  Identities=15%  Similarity=0.175  Sum_probs=149.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      +.+..|.++|.+.+ +.++..|+.+|..+...-+.......-...++.++.++.+.|..+.-.|+.+|..+..+.|-..+
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            35888999998888 99999999999999986444443333336899999999999999999999999999987765444


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                      .+..  ....+..++ .+.++-+...++..+..+--      ......++..+.+++.+.|..++..++.++.+++..+.
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4333  467888888 68899999999999999821      12235677888899988999999999999999987543


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~  316 (417)
                      +.  .+. .+++.-+-.+|++.|+.++..|+.++-.+.+..
T Consensus       183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            21  111 246777889999999999999999999998764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.78  E-value=6.3e-10  Score=85.93  Aligned_cols=121  Identities=21%  Similarity=0.201  Sum_probs=93.0

Q ss_pred             hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      ...++.+..+|.++++.++..++++|+.+...            .++.|+..|.++++.++..|+++|+++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            45677889999999999999999999876421            25788999999999999999999999863  1    


Q ss_pred             HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                           ..++.|...+.++ ++.||..|+|+|+++..  +         ..++.|+.+++++++.++..|+++|.++
T Consensus        73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 2378889999888 99999999999999852  2         3578888999999999999999998753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.71  E-value=8.6e-08  Score=82.47  Aligned_cols=193  Identities=11%  Similarity=0.103  Sum_probs=140.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchHHHHHHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCCh-
Q 014864          163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-  238 (417)
Q Consensus       163 ~L~~ll~~~~~~i~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~~-  238 (417)
                      .+...+.+.+..-|..++..|.. ++.+.+.......+ ...+..|.+.+..+.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35567788999999999999999 87543321100000 12355667777567889999999999999997643 2322 


Q ss_pred             hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH-HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV-IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       239 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      .....++|.++..+.+..+.|+..+..++..++...+.....- .+ .+++.|...|++.++.++..++.+|+.++....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            4557789999999998888998888888777765331100000 11 267788999999999999999999999986554


Q ss_pred             ---HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          318 ---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       318 ---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                         ......+...++|.+..++.+. ++.+|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               2222233357899999999999 99999999999999875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.66  E-value=4.1e-09  Score=81.27  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (417)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (417)
                      ...++.++.+|++++ +.++..|+++|+.+..            ..++.|+.+|.++++.++..++++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            445888999999888 8999999999887643            136889999999999999999999999852  1   


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  270 (417)
                            ..++.|+..+ .++++.++..++|+|..+..          ...++.|..++.++++.++..++++|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  1478888888 67889999999999999862          35788999999988999999999988653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.65  E-value=4.1e-06  Score=84.54  Aligned_cols=300  Identities=14%  Similarity=0.141  Sum_probs=211.6

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC--ch
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SE  150 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~  150 (417)
                      ..+..+++.+...+......++..+..++.+.....   .+..+++..|...+.+.. ..  ..|+.++..++...  ..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            345566666766556666778888888766431111   111356888888888765 23  88899999999533  11


Q ss_pred             hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ..+.++- +.+|.++..+.+....++..|-.++..++.. ++...     ..+++.|+..+........+..++.++..|
T Consensus        88 ~~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           88 SVEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             TTHHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            2233222 6789999999988899999999888888743 33322     226888999995566789999999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (417)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~  308 (417)
                      +...|.........++|.+...+.+..++|...+..++..+|..-+ ..+     ..++|.|+..+.+++.  ...++..
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHH
Confidence            9865433334457889999999998899999988888877765211 111     2478999999998853  4456666


Q ss_pred             HHHhhcCCh--HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCCHHHHHHHhcc-CC
Q 014864          309 VGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLEN-AE  383 (417)
Q Consensus       309 L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~~l~~-~~  383 (417)
                      |+.-+.-..  .-+-.    =.+|.|..-|... ...+++.++.++.|+|.  .+|.....++. .++|.|-...+. .+
T Consensus       235 l~~~tfv~~v~~~~l~----~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~  308 (986)
T 2iw3_A          235 LGATTFVAEVTPATLS----IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD  308 (986)
T ss_dssp             HTTCCCCSCCCHHHHH----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred             hhcCeeEeeecchhHH----HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence            766554333  11221    2478888888877 88999999999999997  67776666554 688888777654 58


Q ss_pred             HHHHHHHHHHHHHh
Q 014864          384 FDIKKEAAWAISNA  397 (417)
Q Consensus       384 ~~v~~~a~~~L~nl  397 (417)
                      |++|.-|..++..+
T Consensus       309 pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          309 PEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988887777766

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.51  E-value=4.9e-06  Score=76.28  Aligned_cols=268  Identities=14%  Similarity=0.118  Sum_probs=169.3

Q ss_pred             cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHH--HHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC-
Q 014864           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP--RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG-  159 (417)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~--~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-  159 (417)
                      .++++..+..|...+..+.+.. ....+..  ..++.  .++..|......+.+..++.+|..+... ++.+..+.+.+ 
T Consensus       135 ~~dd~~~ll~a~~l~~ll~~~~-~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~  210 (480)
T 1ho8_A          135 KGDFQTVLISGFNVVSLLVQNG-LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEK  210 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSTT-TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHH
T ss_pred             cccchHHHHHHHHHHHHHhccC-CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHccc
Confidence            3444555555555555543322 2211111  11123  4555566532256677899999999885 88888887643 


Q ss_pred             -ChhHHHHhhC----C-------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCH--HHHHHHhcCCCchhHH
Q 014864          160 -AVPIFVKLLY----S-------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSML  219 (417)
Q Consensus       160 -~i~~L~~ll~----~-------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~~~~~  219 (417)
                       .++.++.++.    +             ....++.+++.+++-++.+.+ ..+.+...+..  ..|+..+.....+.+.
T Consensus       211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvv  289 (480)
T 1ho8_A          211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVS  289 (480)
T ss_dssp             HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred             chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence             3566654332    1             135678999999999987766 44555555543  5677778777889999


Q ss_pred             HHHHHHHhhhhcCCCCCChh-----h-hhchHHHHHHhhcC---CChHHHHHHHHHHHHhccC------ChHHHHHHH--
Q 014864          220 RNATWTLSNFCRGKPQPPFD-----Q-VSPALPALAHLIHS---NDDEVLTDACWALSYLSDG------TNDKIQAVI--  282 (417)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~-----~-~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~l~~~------~~~~~~~~~--  282 (417)
                      +-++.++.|+....+.....     . ...+++ ++..|..   +|+++..+.-.....|...      -++....+.  
T Consensus       290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG  368 (480)
T 1ho8_A          290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK  368 (480)
T ss_dssp             HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence            99999999999875322111     1 133444 4444432   3776655543322222100      011111111  


Q ss_pred             --------------H----------cCChHHHHhhcCC----------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864          283 --------------E----------AGVFPRLAEFLMH----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (417)
Q Consensus       283 --------------~----------~~~~~~L~~~l~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  328 (417)
                                    .          ..++..|+.+|.+          .++.+..-||.=||.++...+.....+-+.|+
T Consensus       369 ~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~  448 (480)
T 1ho8_A          369 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG  448 (480)
T ss_dssp             CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred             CcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc
Confidence                          1          1346788888873          36778888999999999999988887777899


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      =..++.++.++ +++||.+|..++..+..
T Consensus       449 K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          449 KADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999 99999999999987754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.50  E-value=5.8e-05  Score=69.27  Aligned_cols=321  Identities=12%  Similarity=0.092  Sum_probs=188.4

Q ss_pred             CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCC--CcHHHHHHhCC-HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS--PPIEEVIRSGV-VPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (417)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  149 (417)
                      ....+++.|.. ...++....+..+..++..++.  .....+.+..- ...+.....+.++.-....+..++..++...+
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~  157 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  157 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence            55778888875 6677777788888888876310  11222332222 22233322234424455566666566654322


Q ss_pred             hhHHHHHhCCChh--HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhc-------------
Q 014864          150 EHTKVVIDHGAVP--IFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN-------------  211 (417)
Q Consensus       150 ~~~~~i~~~g~i~--~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~-------------  211 (417)
                      ...+.+-  ..+.  -++..|.+ ++...+..++.+|..+..... +|..+.+.+  .+++++.++.             
T Consensus       158 ~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~  234 (480)
T 1ho8_A          158 HNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  234 (480)
T ss_dssp             CCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             ccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence            2111110  1122  34445554 344556778888888887655 788776543  2566654432             


Q ss_pred             ---CCCchhHHHHHHHHHhhhhcCCCCCChhhhhc--hHHHHHHhhcC-CChHHHHHHHHHHHHhccCCh----HHHH-H
Q 014864          212 ---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ-A  280 (417)
Q Consensus       212 ---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~----~~~~-~  280 (417)
                         ......++..++.+++-|+..++.........  .++.|+..++. ..++|..-++.++.|+.....    .... .
T Consensus       235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~  314 (480)
T 1ho8_A          235 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  314 (480)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHH
Confidence               11145678888999999988743211111122  23556666654 468888889999999987652    2222 3


Q ss_pred             HHHcCChHHHHhhcCCC---ChhhHHHHHHHHHHhh----------------------cCChHHHH-HHH----------
Q 014864          281 VIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIV----------------------TGDDMQTQ-CVI----------  324 (417)
Q Consensus       281 ~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~l~----------------------~~~~~~~~-~~~----------  324 (417)
                      ++..+++ .++..|...   |+++... +..|....                      .-++.... .+.          
T Consensus       315 ~~~~~~l-~~l~~L~~rk~~Dedl~ed-l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~  392 (480)
T 1ho8_A          315 LLLGNAL-PTVQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  392 (480)
T ss_dssp             HHHHCHH-HHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHccch-HHHHHHhhCCCCcHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence            3334444 455555432   4433222 11111111                      11111111 111          


Q ss_pred             HcCChHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864          325 EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (417)
Q Consensus       325 ~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~  395 (417)
                      +..++..|+++|.+         +.++.+..-||.=++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+.
T Consensus       393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ  472 (480)
T 1ho8_A          393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ  472 (480)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            23556789999973         227888999999999999977877777777899999999999999999999999998


Q ss_pred             HhhC
Q 014864          396 NATS  399 (417)
Q Consensus       396 nl~~  399 (417)
                      .+..
T Consensus       473 klm~  476 (480)
T 1ho8_A          473 AIIG  476 (480)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.43  E-value=5.9e-05  Score=77.83  Aligned_cols=299  Identities=11%  Similarity=0.075  Sum_probs=174.4

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhCCC---c--hhHHHHHh
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID  157 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~i~~  157 (417)
                      ++++.+...+++++...++   --+...+++.++++.+. .+|.  + ++++..|+.||..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            3566777788888888875   23466778889999999 8885  3 789999999999998732   2  12211111


Q ss_pred             C--CChhHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchHHHHHHhcCCHHHHHHHhcCCC
Q 014864          158 H--GAVPIF--------------VKLLYSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQP  214 (417)
Q Consensus       158 ~--g~i~~L--------------~~ll~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~ll~~~~  214 (417)
                      .  +.++.+              ...-...+.+.....+..+..+..       ..+..+..+.  .++..|+.+. ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence            0  111111              111122345555555555544432       2222232221  1234455543 566


Q ss_pred             chhHHHHHHHHHhhhhcCCC--CCChhhhh----chHHHHHHhhcCCC--------------------hH-HHHHHH-HH
Q 014864          215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND--------------------DE-VLTDAC-WA  266 (417)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~--~~~~~~~~----~~l~~L~~ll~~~~--------------------~~-v~~~a~-~~  266 (417)
                      +.++...++...+.+...--  ........    ..++.++.-+..++                    ++ ..-... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            88888888888877776321  11222233    34444444433221                    00 111011 23


Q ss_pred             HHHhccCC-hHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-----
Q 014864          267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----  338 (417)
Q Consensus       267 l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----  338 (417)
                      |.+++.-. ++..+.     +++.+...+.+  .+|..+..+++++|.++.+..+....-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            33332211 122221     23444444543  579999999999999998776543333334677888888864     


Q ss_pred             CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          339 NYKKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      + ...++..++|++|.++.   .+++...     .++..|++.+.++++.++..|++++.+++..+.
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~  572 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            3 45677789999999876   3444333     356677888887889999999999999998654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.23  E-value=4e-05  Score=66.82  Aligned_cols=157  Identities=13%  Similarity=0.088  Sum_probs=124.7

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      ...+++.|.+.+......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++-.+ ......
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g  196 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence            467888899888889999999999977754 788999999999999999999988 89999999999999886 344434


Q ss_pred             HH-hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh--------cC--CHHHHHHHhc--CCCchhHHHH
Q 014864          155 VI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--------QG--GLVPLLAQLN--GQPKLSMLRN  221 (417)
Q Consensus       155 i~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--------~g--~i~~L~~ll~--~~~~~~~~~~  221 (417)
                      ++ ....|..+..++.+.+..+...|+..|..++..++.....+.+        .|  .+..++.+|.  +..|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            44 4467888899999999999999999999998766533333222        22  3678889994  2568899998


Q ss_pred             HHHHHhhhhcCCC
Q 014864          222 ATWTLSNFCRGKP  234 (417)
Q Consensus       222 a~~~l~~l~~~~~  234 (417)
                      +...+-.+....|
T Consensus       277 amtLIN~lL~~ap  289 (339)
T 3dad_A          277 TVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCC
Confidence            8887777666544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.14  E-value=3.9e-05  Score=79.44  Aligned_cols=305  Identities=10%  Similarity=0.050  Sum_probs=169.8

Q ss_pred             HHhhhcCC---ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC------
Q 014864           78 MVAGVWSN---DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------  148 (417)
Q Consensus        78 l~~~l~s~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~------  148 (417)
                      ++..+.++   ++.++..|++.+..+...- .   .. .-..+++.++..|.+++ +.++..|+++|.+++...      
T Consensus       460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~---~~-~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~~~~~~~~  533 (960)
T 1wa5_C          460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQL-T---KA-QLIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSP  533 (960)
T ss_dssp             THHHHHCSSCSCHHHHHHHHHHHHHTGGGS-C---HH-HHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             hHHHhcCCCCCCceehHHHHHHHHHHHhhC-C---HH-HHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcccccccc
Confidence            34455665   8899999999999986542 1   11 12345888898888877 899999999999998741      


Q ss_pred             -ch-hHHHHHh--CCChhHHHHhhCCCC---HH--HHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHh----c
Q 014864          149 -SE-HTKVVID--HGAVPIFVKLLYSPS---DD--VREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQL----N  211 (417)
Q Consensus       149 -~~-~~~~i~~--~g~i~~L~~ll~~~~---~~--i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll----~  211 (417)
                       ++ ....+..  ..+++.|+.++....   ..  ..+.++.+|+.++.    .-..+-..     .++.|...+    .
T Consensus       534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~  608 (960)
T 1wa5_C          534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAK  608 (960)
T ss_dssp             CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTT
T ss_pred             cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHh
Confidence             11 1111111  135556666666531   11  23456666665542    11112222     233344333    2


Q ss_pred             CCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864          212 GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (417)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  290 (417)
                      ...++.+...++.+++.++... +.........++|.+...|..+..++..++...++.+......... .. ..+++.+
T Consensus       609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~-~~~~~~l  686 (960)
T 1wa5_C          609 NPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPE-SI-KPLAQPL  686 (960)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCT-TT-GGGHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCH-HH-HHHHHHH
Confidence            3446777778899999988873 2223334467788888888776666777777777666532210000 00 0134444


Q ss_pred             H--hhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH
Q 014864          291 A--EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQAV  366 (417)
Q Consensus       291 ~--~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l  366 (417)
                      .  ..+...  ......+++|.++.......   +.. ..++..+..++.+. .  ....++++++.++...+.. ....
T Consensus       687 ~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~---~~~~~~~l~~~~~~~~~~-~--~~~~a~~ll~~i~~~~~~~~~~~y  758 (960)
T 1wa5_C          687 LAPNVWELK--GNIPAVTRLLKSFIKTDSSI---FPDLVPVLGIFQRLIASK-A--YEVHGFDLLEHIMLLIDMNRLRPY  758 (960)
T ss_dssp             TSGGGGCCT--TTHHHHHHHHHHHHHHHGGG---CSCSHHHHHHHHHHHTCT-T--THHHHHHHHHHHHHHSCHHHHGGG
T ss_pred             cCHHHhcCC--CCchhHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCC-c--ccchHHHHHHHHHHHCCHHHHHHH
Confidence            4  444433  24445666676664322211   000 01222334444444 3  2488999999998743333 3333


Q ss_pred             HHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCHH
Q 014864          367 IEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHE  404 (417)
Q Consensus       367 ~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~  404 (417)
                      +. .+++.++..+... ..++++..+..++.++..-+++
T Consensus       759 l~-~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  796 (960)
T 1wa5_C          759 IK-QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD  796 (960)
T ss_dssp             HH-HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HH-HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHH
Confidence            32 3566666666654 4567666666666665433444

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.11  E-value=9.1e-05  Score=76.71  Aligned_cols=256  Identities=10%  Similarity=0.098  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchHHHHHHhc-----
Q 014864          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----  200 (417)
Q Consensus       132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-----  200 (417)
                      ..+..|..+|..++...+   +.++. .+++.+...+.      +++...++.|+.+++.++.....+... ...     
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~  450 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLL  450 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccc
Confidence            456677778877776432   12221 23344444444      467789999999999998542111000 000     


Q ss_pred             CCH----HHHHHHhcCC--CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864          201 GGL----VPLLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (417)
Q Consensus       201 g~i----~~L~~ll~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  274 (417)
                      ...    ..++..+.+.  .++-++..++|+++.++..-   .......+++.++..|.+++..|+..|++++.+++...
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            111    1233334232  27889999999999999863   23456788999999998888999999999999988641


Q ss_pred             -----------hHHHHHHHHcCChHHHHhhcCCCC-----hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--
Q 014864          275 -----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL--  336 (417)
Q Consensus       275 -----------~~~~~~~~~~~~~~~L~~~l~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--  336 (417)
                                 .+.....+ ..+++.|+.++....     ......++.+|+.++....+....... .+++.+...+  
T Consensus       528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~  605 (960)
T 1wa5_C          528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTI  605 (960)
T ss_dssp             SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHH
T ss_pred             cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHH
Confidence                       11111111 125566667776641     113456677776665322111110100 1233333333  


Q ss_pred             --cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          337 --SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       337 --~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                        +++.++..+..++-+++.++.. .++....+ ...++|.+...|.....+...++...+..+.
T Consensus       606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence              4443667777788888888864 44433333 3357788888887665666666666666654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.08  E-value=0.00065  Score=71.03  Aligned_cols=299  Identities=11%  Similarity=0.094  Sum_probs=165.7

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHhCCC--ch---hHHHHHh-
Q 014864           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID-  157 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~i~~-  157 (417)
                      ++..++..++.++..++.-   -+...+....+++.+.+ ++.  + ++++..|+.+|..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            4567788888888877642   22344556777777773 443  4 899999999999998752  21   1111111 


Q ss_pred             -CCChhHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864          158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (417)
Q Consensus       158 -~g~i~~L~~-ll-------------~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~ll~~~~~  215 (417)
                       .+.+..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ..+++.++... ..++
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222211 11             12234444444444433321       111122221  12455666655 5567


Q ss_pred             hhHHHHHHHHHhhhhc----CCCCCC--hhhhhchHHHHHHhhcCC-------------------Ch---HHHHHHHHHH
Q 014864          216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL  267 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~----~~~~~~--~~~~~~~l~~L~~ll~~~-------------------~~---~v~~~a~~~l  267 (417)
                      .++...++..+..++.    .+....  .......++.++..+..+                   |.   .....+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            8888888888888877    321111  123344555555544221                   10   1122344455


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHhhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-----CC
Q 014864          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----NY  340 (417)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~  340 (417)
                      ..++......   ++.. +.+.+-..+.  +.++..+..+++++|.++.+.........-..+++.+..+...     + 
T Consensus       438 ~~l~~~~~~~---~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-  512 (1049)
T 3m1i_C          438 VYLTHLNVID---TEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-  512 (1049)
T ss_dssp             HHHHHHCHHH---HHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred             HHHHccCHHH---HHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence            5554332221   1111 2344444454  3578899999999999986544332111122345555554332     2 


Q ss_pred             chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          341 KKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       341 ~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      .+.++..++|+++.++.   ..++...     .+++.|+..+.++++.|+..|++++.+++..+.
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            45666679999998875   2332222     367788888888899999999999999998644

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.07  E-value=0.00013  Score=75.78  Aligned_cols=250  Identities=10%  Similarity=0.116  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHhCCCc-hhHHHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHH
Q 014864          133 LQFEAAWALTNIASGTS-EHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL  206 (417)
Q Consensus       133 ~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L  206 (417)
                      .|..+..+|..++..-+ .....+     ++.+-..+.+     .+...++.++++++.++.......     ...++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence            55666777777666433 111111     2222223322     567789999999999986644321     1233444


Q ss_pred             HHHh---cC-CCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014864          207 LAQL---NG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (417)
Q Consensus       207 ~~ll---~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (417)
                      +.++   .. +.++.++..++|+++.++..-... ......+++.++..+.   +.++..|++++.+++..........+
T Consensus       507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~  582 (971)
T 2x1g_F          507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA  582 (971)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH
Confidence            4433   21 347889999999999999753221 2456778888888882   78999999999999976554443333


Q ss_pred             HcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHH----hhcCCC-chhHHHHHHHHHHH
Q 014864          283 EAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLN----LLSGNY-KKSIKKEACWTVSN  354 (417)
Q Consensus       283 ~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~----ll~~~~-~~~v~~~a~~~L~n  354 (417)
                      + .++..+..++..+  +...+..++.+++.++...+ ......+. .+++.++.    +++... ++..+.....++..
T Consensus       583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~  660 (971)
T 2x1g_F          583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNM  660 (971)
T ss_dssp             H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            3 3667777777763  56788899999999976432 22221221 23334433    333321 22233444444444


Q ss_pred             Hh---c--CC-----------HHHHHHHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhC
Q 014864          355 IT---A--GN-----------REQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATS  399 (417)
Q Consensus       355 l~---~--~~-----------~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~  399 (417)
                      ++   .  +.           ++....+. ..+++.+..++..  .+..+.+.+++++++++.
T Consensus       661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          661 ISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            43   2  11           11112222 3678888888764  367999999999999665

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.07  E-value=8.5e-05  Score=64.79  Aligned_cols=181  Identities=17%  Similarity=0.141  Sum_probs=125.1

Q ss_pred             HHHHhcCCCchhHHHHHHHHHhhhh-cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc
Q 014864          206 LLAQLNGQPKLSMLRNATWTLSNFC-RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (417)
Q Consensus       206 L~~ll~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (417)
                      ++..| .+.+...++.++.-|..+. .+..-....+..+++..|+..+...+...+.+++.++..+..+.++.-..+-..
T Consensus       123 iiekL-~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          123 ILEKL-YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHH-HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHH-hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence            33444 2345556777777777733 332333334448899999999999999999999999999998766554444455


Q ss_pred             CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc----------CChHHHHHhhc---CCCchhHHHHHHHH
Q 014864          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----------QALPCLLNLLS---GNYKKSIKKEACWT  351 (417)
Q Consensus       285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~---~~~~~~v~~~a~~~  351 (417)
                      .++..+..++.+.+..+...|+..|-.++..++.....+.++          ..++.++.+|+   +. +.+++..|.-.
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~amtL  280 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHHHH
Confidence            688999999998889999999999999998876554433322          24778999997   55 88888887776


Q ss_pred             HHHHhcC--CHH----HHHHHHHCCCHHHHHHHhccC--CHHHHH
Q 014864          352 VSNITAG--NRE----QIQAVIEANIIGPLVALLENA--EFDIKK  388 (417)
Q Consensus       352 L~nl~~~--~~~----~~~~l~~~~~i~~L~~~l~~~--~~~v~~  388 (417)
                      +-.+..+  +.+    ....+-+.|+-..+.+.++..  +++++.
T Consensus       281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            6666543  223    222233566666677767654  555544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.06  E-value=0.00016  Score=74.96  Aligned_cols=303  Identities=10%  Similarity=0.053  Sum_probs=169.7

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHh-------hcCCCC--HHHHHHHHHHHHHHhCCCchhH---
Q 014864           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF-------LLREDY--PQLQFEAAWALTNIASGTSEHT---  152 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~l-------L~~~~~--~~~~~~a~~~L~~l~~~~~~~~---  152 (417)
                      +++..+..|+.++..++...........+ ..++|.++.+       +...+.  ++.....+..+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778889999999998753111111111 1123333332       233331  2666667777776664222111   


Q ss_pred             ---------HHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchHHHHHHh--cCCHHHHH
Q 014864          153 ---------KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGD---------SPRCRDLVLS--QGGLVPLL  207 (417)
Q Consensus       153 ---------~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~  207 (417)
                               ..+.  ..++.++.+...     .++++...+++.+..++..         .+.....+..  ...++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  345566665533     4678889999988887641         1111111110  12344445


Q ss_pred             HHhcCCCc--------------hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC-----CChHHHHHHHHHHH
Q 014864          208 AQLNGQPK--------------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-----NDDEVLTDACWALS  268 (417)
Q Consensus       208 ~ll~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~  268 (417)
                      ..+...++              ...+..+..++..++...+   ......+++.+...+.+     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            55422111              1355667777777775433   23334444455455543     56778899999999


Q ss_pred             HhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864          269 YLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (417)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  347 (417)
                      .++.+........+.. +++.+..+.. +.++.++..+++++|.++..-....+.+  ..+++.++..+.    +.++..
T Consensus       490 ~iae~~~~~~~~~l~~-l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~----~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIPR-LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN----SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHHH-HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH----SSCHHH
T ss_pred             HHHhhcChhhhHHHHH-HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC----hHHHHH
Confidence            9987755432211111 3332222221 3478999999999999884322111111  134566666662    579999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCC
Q 014864          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~  401 (417)
                      |++++.+++......+...++ .++..|..++..+  +.+.+..+..+++.++...
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            999999999766655544443 5777778888763  5788999999999988753

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.99  E-value=0.00011  Score=76.19  Aligned_cols=309  Identities=11%  Similarity=0.045  Sum_probs=167.5

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHH----HHH--hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE----VIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~  148 (417)
                      ++.+++.+  +++..+..|+.++..++.....+....    ++.  .+..+.+...+...+ .+.....+..+..++...
T Consensus       243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~  319 (963)
T 2x19_B          243 IQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENH  319 (963)
T ss_dssp             HHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence            34444444  356788899999999987532221111    111  112222333334445 555566666666665421


Q ss_pred             chhH-------HHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chHHHHHHh--cCCHHHH
Q 014864          149 SEHT-------KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDS--------PRCRDLVLS--QGGLVPL  206 (417)
Q Consensus       149 ~~~~-------~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~--------~~~~~~~~~--~g~i~~L  206 (417)
                      +...       ..+.  ..++.++.+...     .++.+...++..+..++.+.        +.....+..  ...++.+
T Consensus       320 ~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  397 (963)
T 2x19_B          320 SRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL  397 (963)
T ss_dssp             HHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            1110       1111  345555555553     34556666666666665411        111111110  0123444


Q ss_pred             HHHhcCCCch--------------hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----cCCChHHHHHHHHHHH
Q 014864          207 LAQLNGQPKL--------------SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----HSNDDEVLTDACWALS  268 (417)
Q Consensus       207 ~~ll~~~~~~--------------~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~l~  268 (417)
                      +..+....+.              +.+..+..++..++...+   ......+++.+...+    .+.+...++.++++++
T Consensus       398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~  474 (963)
T 2x19_B          398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ  474 (963)
T ss_dssp             HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            4444221111              124455556666554322   122233444444555    4567788999999999


Q ss_pred             HhccCChHHHHHHHHcCChHHHHhh---cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864          269 YLSDGTNDKIQAVIEAGVFPRLAEF---LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK  345 (417)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~~~~L~~~---l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  345 (417)
                      .++.+.....     ...++.++..   +.++++.++..+++++|.++..-.....  .-..+++.++..|.   ++.|+
T Consensus       475 ~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~---~~~V~  544 (963)
T 2x19_B          475 SIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVLPLVLHALG---NPELS  544 (963)
T ss_dssp             HHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHHHHHHHTT---CGGGH
T ss_pred             HHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHhC---CchHH
Confidence            9987643211     1123333333   2345788999999999999853222222  22478888998885   37899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCC
Q 014864          346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~  402 (417)
                      ..|++++.+++...+......+ ..++..|..++..+  +.+.+..+..+++.++....
T Consensus       545 ~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          545 VSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence            9999999999964332221111 13455555666642  57889999999999987654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.98  E-value=3.4e-05  Score=79.39  Aligned_cols=302  Identities=12%  Similarity=0.022  Sum_probs=167.9

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC--chhHHHHHhCCCh
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV  161 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i  161 (417)
                      +.++.+...++.++...++   --+...++..++++.+..+|..   ++++..|+.||+.+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4678888999999999975   2456677788899999999874   789999999999998854  2333333322011


Q ss_pred             hHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hHHHH--HHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864          162 PIFVKLLY--SPSDDVREQAVWALGNIA------GDSP-----RCRDL--VLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (417)
Q Consensus       162 ~~L~~ll~--~~~~~i~~~a~~~L~nl~------~~~~-----~~~~~--~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l  226 (417)
                      ...+..+.  ..|.+..+..+..+..++      ...+     +.+..  -.-.+.++.++.++ .+++.++...++.++
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11122222  356666554444443332      1111     11100  11124778888888 566667777676666


Q ss_pred             hhhhcCC---CC--CChh----hhhchHHHHHHhhcCC-----Ch-----------HHHHHHHHHHHHhc-cCChHH-HH
Q 014864          227 SNFCRGK---PQ--PPFD----QVSPALPALAHLIHSN-----DD-----------EVLTDACWALSYLS-DGTNDK-IQ  279 (417)
Q Consensus       227 ~~l~~~~---~~--~~~~----~~~~~l~~L~~ll~~~-----~~-----------~v~~~a~~~l~~l~-~~~~~~-~~  279 (417)
                      ..+....   +.  ....    .....++.++.-+..+     +.           +.|.... .+...+ .-.++. ..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            6655321   11  1112    2234444444444321     11           2344433 332222 112221 11


Q ss_pred             HHHHcCChHHHHhhcC---CCChhhHHHHHHHHHHhhcCChHHHHHH-----HHcCChHHHHHhhc-----CCCchhHHH
Q 014864          280 AVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK  346 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~-----~~~~~l~~L~~ll~-----~~~~~~v~~  346 (417)
                      .+.+. +.+.+-..+.   +.+|..++.++.+++.++.+.......+     .-..+++.+..+++     .+ ++.|+.
T Consensus       436 ~~~~~-i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          436 YMYSA-ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHHH-HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence            11111 2223333342   3458889999999999987654321111     00123455666654     45 899999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh------ccCCHHHHHHHHHHHHHhhCCC
Q 014864          347 EACWTVSNITAGNREQIQAVIEANIIGPLVALL------ENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l------~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .++|+++..+.--..      +...++.++..+      .+++.+++..|+.++.+++..+
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            999999999862111      123455555544      3456789999999999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.95  E-value=0.0036  Score=63.49  Aligned_cols=265  Identities=12%  Similarity=0.088  Sum_probs=176.1

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-chh
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEH  151 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~  151 (417)
                      .+..+.+.+.+....  ..|+..+..++.... .++. +-.--+.+|.++..+.+.. ..++..|..++..+...- ++.
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence            455666666553222  778888888874431 2223 2222367999999998888 789888877777766632 333


Q ss_pred             HHHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          152 TKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      ..     .++|.|+..|.+. ....+..|+.++..++...+..-..-+ -.++|.+...+ -+..+++...+..++..+|
T Consensus       131 ~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          131 IK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             HH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred             HH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence            32     4588999988754 588999999999999976553222211 12566677777 7888999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~  310 (417)
                      ..-.+.+   +.+.+|.|++.+.+++.  ...++..|+.-+.-.+-... .+. =.+|.|..-|......++..++-++.
T Consensus       204 ~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~-~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          204 ETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPA-TLS-IMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             GGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHH-HHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             hcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecch-hHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence            7644433   36789999999987743  33344444433222111101 011 13566777777778888899999999


Q ss_pred             HhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864          311 NIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (417)
Q Consensus       311 ~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (417)
                      |+|.--+ ......+-..++|.+-+....-.+|++|..|..++..+.
T Consensus       277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            9986432 233334556788888888877669999988888877773

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00045  Score=60.32  Aligned_cols=191  Identities=12%  Similarity=0.100  Sum_probs=127.9

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcH-HHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  149 (417)
                      ..+| +-+.|.+.++..|..|+..+.+++........ +...  -....+.+-..+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3455 66889999999999999999998865321111 1111  1234566777888777 8999999999998876321


Q ss_pred             ------hhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHH
Q 014864          150 ------EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (417)
Q Consensus       150 ------~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a  222 (417)
                            ......+ ..+++.|+. .+.+....++..+..++..++...... ..     +++.++..+ .+.++.++..+
T Consensus        88 ~~~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~  159 (278)
T 4ffb_C           88 SSSLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA  159 (278)
T ss_dssp             ---CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred             hhhcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence                  1111122 256777775 578888999999998888776432211 11     234555556 77889999888


Q ss_pred             HHHHhhhhcCC--CCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864          223 TWTLSNFCRGK--PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (417)
Q Consensus       223 ~~~l~~l~~~~--~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  273 (417)
                      +..|..+....  .... ...+..+++.+..++.+.|+.|+..+..++..+-..
T Consensus       160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            88888776542  1111 223455677788899999999999999998877543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00067  Score=59.18  Aligned_cols=186  Identities=15%  Similarity=0.105  Sum_probs=125.9

Q ss_pred             HHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-----ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-----
Q 014864          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-----  275 (417)
Q Consensus       206 L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-----  275 (417)
                      +-..+ .+.+...+..++..+..+....+..     .........+.+...+.+.+..+...++.++..++....     
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            45666 7889999999999998887654221     112234566777888888899999999999988865321     


Q ss_pred             -HHHHHHHHcCChHHHHh-hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864          276 -DKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (417)
Q Consensus       276 -~~~~~~~~~~~~~~L~~-~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (417)
                       ......+ ..+++.|+. .+.+....++..++.++..++........      +++.+...+.+. ++.++.+++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K-npkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK-LPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence             1111122 236777775 47888888999999888777644322111      245667778888 9999999999888


Q ss_pred             HHhc--CCHH-HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          354 NITA--GNRE-QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       354 nl~~--~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      ++..  |... .....+. .+++.+..++.+.++.||..|..++..+....
T Consensus       165 ~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            8864  2110 0111111 35567778889999999999999998886653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.69  E-value=0.0066  Score=62.72  Aligned_cols=152  Identities=13%  Similarity=0.111  Sum_probs=97.5

Q ss_pred             hHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHH-HHHHHHcCChHHHHhhcCC-----CChhhHHHHHHHHHHhhcC
Q 014864          244 ALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTG  315 (417)
Q Consensus       244 ~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~  315 (417)
                      .++.+...+..  .+...++.++|+++.++.+..+. ...++.. +++.|+.++.+     +...++..+++++|.++.-
T Consensus       452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w  530 (1023)
T 4hat_C          452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT-VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF  530 (1023)
T ss_dssp             HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence            34444444443  47889999999999999876543 2233333 67778887763     2334566788999988753


Q ss_pred             ChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------CCCHH----HHHHHhccCCHH
Q 014864          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ANIIG----PLVALLENAEFD  385 (417)
Q Consensus       316 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~----~L~~~l~~~~~~  385 (417)
                      -...... + ..++..++..+.++ ++.++..|||++.++|..+..   .+..      ...++    .+......-+++
T Consensus       531 l~~~~~~-L-~~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~  604 (1023)
T 4hat_C          531 LKAHWNF-L-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQ  604 (1023)
T ss_dssp             HHHCHHH-H-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred             HhccHHH-H-HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence            2222111 1 13456677777666 789999999999999974332   2221      11333    334444445677


Q ss_pred             HHHHHHHHHHHhhCCCC
Q 014864          386 IKKEAAWAISNATSGGT  402 (417)
Q Consensus       386 v~~~a~~~L~nl~~~~~  402 (417)
                      -+..+..+++.++....
T Consensus       605 ~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          605 QVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            78899999999988864

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.66  E-value=0.0072  Score=63.15  Aligned_cols=235  Identities=11%  Similarity=0.099  Sum_probs=130.2

Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhC----CCc---hHHHHHHhcCCHHHHHHHhcCCC-----------------
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAG----DSP---RCRDLVLSQGGLVPLLAQLNGQP-----------------  214 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~----~~~---~~~~~~~~~g~i~~L~~ll~~~~-----------------  214 (417)
                      .+++.++.+...++.++...++..+..++.    ...   .++..+ . ..++.++..+...+                 
T Consensus       344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~  421 (1049)
T 3m1i_C          344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-S-QLRLVIIENMVRPEEVLVVENDEGEIVREFV  421 (1049)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-H-HHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-H-HHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence            356777777677888999999888887765    211   111111 1 12334444432110                 


Q ss_pred             -ch---hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864          215 -KL---SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (417)
Q Consensus       215 -~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  288 (417)
                       +.   ..+..+..+|..++...+   ......+.+.+...+..  .+...++.++++++.++....+....-.-..+++
T Consensus       422 ~d~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~  498 (1049)
T 3m1i_C          422 KESDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK  498 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence             00   223445556666663321   12223344555555543  4678899999999999865433211111112455


Q ss_pred             HHHhhcCC-----CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864          289 RLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (417)
Q Consensus       289 ~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (417)
                      .+..+...     +.+.++..+++++|.++..-..... .+ ..+++.++..+.++ ++.|+..||+++.+++...+...
T Consensus       499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l-~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l  575 (1049)
T 3m1i_C          499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHF  575 (1049)
T ss_dssp             HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence            55554332     2344455688999987743222212 11 24577788888887 89999999999999997433221


Q ss_pred             H--------HHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864          364 Q--------AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       364 ~--------~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~  402 (417)
                      .        ..+ ..++..+..++..-+.+-......+++.++....
T Consensus       576 ~~~~~~~~~p~~-~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          576 VIQQPRESEPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HSCCTTCSSCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             hcccCCCCCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            1        111 1234444455555455556677777777765543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.64  E-value=0.011  Score=60.97  Aligned_cols=297  Identities=12%  Similarity=0.122  Sum_probs=163.9

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHhCCC-chhHHHHHh--CC
Q 014864           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG  159 (417)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L-v~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~--~g  159 (417)
                      ++++.+...++.++..+++   =-+...+++.++++.+ ..+|.  + ++.+..|+.||+.+.+.. ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            4567777778888888864   2346678888989988 47764  3 789999999999998743 222222211  01


Q ss_pred             ChhHHHHhhC-------------CCCHHHHHHHHHHHHHhhCC-------CchHHHHHHhcCCHHHHHHHhcCCCchhHH
Q 014864          160 AVPIFVKLLY-------------SPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (417)
Q Consensus       160 ~i~~L~~ll~-------------~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  219 (417)
                      .+..+..++.             ..+.+....-+..+..+...       .+..+..+..  ++..++.+- ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            2222222221             12234444444444443321       1111221111  233344444 56788888


Q ss_pred             HHHHHHHhhhhcC----CC-----CC------------ChhhhhchHHHHHH----hhcCCC------------------
Q 014864          220 RNATWTLSNFCRG----KP-----QP------------PFDQVSPALPALAH----LIHSND------------------  256 (417)
Q Consensus       220 ~~a~~~l~~l~~~----~~-----~~------------~~~~~~~~l~~L~~----ll~~~~------------------  256 (417)
                      +.+...+..|...    .+     .+            ......+++..|..    -+..++                  
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            8888877766542    11     00            01112333333333    222211                  


Q ss_pred             --h-----HHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864          257 --D-----EVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (417)
Q Consensus       257 --~-----~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  326 (417)
                        .     ++..++   +.+++.-. ++....     .++.+...+..  .+|.....+++++|.++..-.+....-.-.
T Consensus       449 d~~~~~ly~~mrd~---L~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          449 DTDSINLYKNMRET---LVYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SCHHHHHHHHHHHH---HHHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hcchHHHHHHHHHH---HHHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence              0     122223   33333212 222221     23444444443  468899999999999985443322212222


Q ss_pred             CChHHHHHhhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          327 QALPCLLNLLSGNY----KKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       327 ~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      .+++.|+.+..+..    ...++...+|++|..+.   .+++...     .++..|++.+.+.++.++..|+.++..++.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            46677777765441    23456667799998875   2344333     356688888888899999999999999987


Q ss_pred             CCC
Q 014864          400 GGT  402 (417)
Q Consensus       400 ~~~  402 (417)
                      .+.
T Consensus       596 ~C~  598 (1073)
T 3gjx_A          596 KCR  598 (1073)
T ss_dssp             HTG
T ss_pred             HHH
Confidence            654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.61  E-value=0.003  Score=55.06  Aligned_cols=240  Identities=14%  Similarity=0.165  Sum_probs=161.4

Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      +...+.+..|+..|..-+.+.+..+..++.++......    ..+.+..  -...+..++....++++.-.+...|....
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            44458888999999888899999999999999865543    2233332  23334444434446666666666677666


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcCCCChhhHHHHHH
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPALR  307 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a~~  307 (417)
                      +...-.......+.+-.+...++.++=++..+|..++..+.......+..++..   .++...-.+|.+++.-++..++.
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            653322223334555567778888899999999999998876666555555554   35677788999999999999999


Q ss_pred             HHHHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHH--CCCHHHHHHHh
Q 014864          308 TVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIE--ANIIGPLVALL  379 (417)
Q Consensus       308 ~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~~l  379 (417)
                      .||.+......   ...++-+..-+..++.+|++. +..++.+|..++--++++   +++....++.  ..++..|-++.
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~  310 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ  310 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence            99999876432   233333456788899999999 999999999999988873   4444444443  33444444444


Q ss_pred             ccC--CHHHHHHHHHHHHHh
Q 014864          380 ENA--EFDIKKEAAWAISNA  397 (417)
Q Consensus       380 ~~~--~~~v~~~a~~~L~nl  397 (417)
                      .+.  |.....+=...+..|
T Consensus       311 ~d~~eDeqF~dEK~~lI~~I  330 (341)
T 1upk_A          311 NDRTEDEQFNDEKTYLVKQI  330 (341)
T ss_dssp             TTC-CCSHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHH
Confidence            433  445555544444444

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.54  E-value=0.00013  Score=67.62  Aligned_cols=249  Identities=17%  Similarity=0.124  Sum_probs=154.1

Q ss_pred             hhhccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc-HHHHHHhCCHHHHHHhhc---------CCCCHHHHHHHH
Q 014864           69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLL---------REDYPQLQFEAA  138 (417)
Q Consensus        69 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~g~i~~Lv~lL~---------~~~~~~~~~~a~  138 (417)
                      ++..+..+.|+..|-++.++++.-|+..||.++....... ...-.+..+.-.|+-.+.         +.--..+|+.|+
T Consensus       170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA  249 (800)
T 3oc3_A          170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA  249 (800)
T ss_dssp             CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence            3444566888889999999999999999999886542100 000000122333333222         222358999999


Q ss_pred             HHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhH
Q 014864          139 WALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM  218 (417)
Q Consensus       139 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  218 (417)
                      .+|+.+ ..-+..      ..++..++..+..+..+++..++-.|..+.   +-..+   -.++++.++.-| .+.|.++
T Consensus       250 QtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDV  315 (800)
T 3oc3_A          250 YLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDI  315 (800)
T ss_dssp             HHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHH
T ss_pred             HHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHH
Confidence            999999 643433      345555555557788999999999998881   11111   123566777777 7788999


Q ss_pred             HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC-CC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864          219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (417)
Q Consensus       219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~  296 (417)
                      +..|+.+|..++  .+    ..+..++..+-..|.+ +| ..-....+..|+.|+..+..   .......+|+|.+++.|
T Consensus       316 RAVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH  386 (800)
T 3oc3_A          316 KLLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS  386 (800)
T ss_dssp             HHHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred             HHHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence            999999999998  22    2234444444444433 22 11223445555555543321   01123689999999999


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HHHhhcCCCchhHHHHHHHHH
Q 014864          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC-LLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      +-..||..+++++..+.  ...         ++.. +..+|-.. +++++..+..+-
T Consensus       387 tITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          387 PVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             SSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            99999999999998887  221         1222 23334444 777776665444

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.54  E-value=0.0026  Score=54.29  Aligned_cols=178  Identities=15%  Similarity=0.091  Sum_probs=117.8

Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh---cCCCchhHHHHHHHHHhhhh----cCCC
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---NGQPKLSMLRNATWTLSNFC----RGKP  234 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~~a~~~l~~l~----~~~~  234 (417)
                      +.+...|-+.+..-+..++..|.......+.  ..+.   .+..+++-+   .-+++..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555566777777777776665543332  1111   222233222   13567777777777776653    3222


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                      .........++|.|+.-+.++.+.++..+-.++..+....+.       ..+++.+..-+.+.++..+..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            233333467899999999888888988877777665431111       1256778888999999999999999999864


Q ss_pred             CChHHHHHHHHcCCh---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          315 GDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       315 ~~~~~~~~~~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      .....     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            32211     23468   9999999998 99999999999997765

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.51  E-value=0.00054  Score=63.60  Aligned_cols=244  Identities=14%  Similarity=0.081  Sum_probs=156.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC--CChhHHHHhh--CC-----CC---HHHHHHHHHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLL--YS-----PS---DDVREQAVWALG  184 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll--~~-----~~---~~i~~~a~~~L~  184 (417)
                      +...|+.-|-++.| ++|.-|+-+|+.+..............  ...-.|+-++  +.     +|   ..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            45566666666774 999999999999876322110000111  2222222222  11     12   479999999999


Q ss_pred             HhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHH
Q 014864          185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC  264 (417)
Q Consensus       185 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~  264 (417)
                      .+ ..-+.-      ..++..++..+ .....+++..++-.|.++..--.     ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            99 554432      34455555544 56678999999999999911111     1578899999999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCch
Q 014864          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK  342 (417)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  342 (417)
                      .+|.-++ .. +....     ++..+...|.+-+  ..-....+..|+.++..+...   -.....+|.|..++.|+ -.
T Consensus       321 etLiPIA-~p-~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP-IT-DSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC-CS-STHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc-ch-hhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999998 22 22332     3445555555432  223345566777777655321   11237899999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (417)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~  395 (417)
                      .||..+..+|..+.  +......+.        .++|-..+.+++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence            99999999998887  233222222        23455678888888877764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.48  E-value=0.013  Score=51.15  Aligned_cols=201  Identities=13%  Similarity=0.109  Sum_probs=147.2

Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh---h---hchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---V---SPALPALAHLIHSNDDEVLTDACWALSY  269 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~---~~~l~~L~~ll~~~~~~v~~~a~~~l~~  269 (417)
                      .+...+.+..|+..+ ..-+-+.++.++.++.++.+.........   +   ..++..|+..-.  ++++...+-..|..
T Consensus        73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            445667788888888 77788999999999999998764332221   1   233444444433  33333333333444


Q ss_pred             hccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHH
Q 014864          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKK  346 (417)
Q Consensus       270 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~  346 (417)
                      +. ..+.....++..+.+-.+.++++.++-++..-|..++-.+.+.+.......+..   .+...+-.+|.++ +.-.|+
T Consensus       150 ci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR  227 (341)
T 1upk_A          150 CI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  227 (341)
T ss_dssp             HH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             HH-HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence            43 455566778888888899999999999999999999999988887666666654   4566777889998 999999


Q ss_pred             HHHHHHHHHhcC--CHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          347 EACWTVSNITAG--NREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       347 ~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .+...|+.+...  +.......+ +..-+..++.+|.+....++.+|..++.-++...
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            999999999864  444444444 4456888999999999999999999999988875

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.36  E-value=0.0096  Score=61.62  Aligned_cols=220  Identities=14%  Similarity=0.144  Sum_probs=127.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC
Q 014864          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (417)
Q Consensus       126 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~  202 (417)
                      .+.+ -..+..++++++.++.+-....     ...++.++..+   .++++.++..++|+++.++..-.... ..+ ..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence            3444 6788899999999998643311     12334444433   33678899999999999984311111 222 347


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCCh-HHHH
Q 014864          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  279 (417)
Q Consensus       203 i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~-~~~~  279 (417)
                      ++.++..+ .+  +.++..|++++.+++...+..-......++..+..++...  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88888888 33  7899999999999997543222233455666666667653  56788888899998876442 3333


Q ss_pred             HHHHcCChHHHHhhc----CCC-ChhhHH---HHHHHHHHhhcCCh---H------------------HHHHHHHcCChH
Q 014864          280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDD---M------------------QTQCVIEYQALP  330 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l----~~~-~~~v~~---~a~~~L~~l~~~~~---~------------------~~~~~~~~~~l~  330 (417)
                      ..++. +++.+...+    ..+ ++..+.   ..+.+|+.+...-.   .                  ..-..+...+++
T Consensus       608 ~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            33332 444444433    222 333333   44455544442210   0                  001112234555


Q ss_pred             HHHHhhcCC-CchhHHHHHHHHHHHHhc
Q 014864          331 CLLNLLSGN-YKKSIKKEACWTVSNITA  357 (417)
Q Consensus       331 ~L~~ll~~~-~~~~v~~~a~~~L~nl~~  357 (417)
                      .+..++... .+..+.+.+|.+++.++.
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            555555321 156788888888887653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.33  E-value=0.00024  Score=60.19  Aligned_cols=67  Identities=19%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 014864          248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (417)
Q Consensus       248 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  327 (417)
                      +..++.++++.|+..++..+                  ..+.|..++.++++.|+..+...++                 
T Consensus       175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------  219 (244)
T 1lrv_A          175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS-----------------  219 (244)
T ss_dssp             GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred             HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence            33455556666666655431                  2345667777777777777777654                 


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          328 ALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                       .+.|..+ +++ ++.||..+...|
T Consensus       220 -~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          220 -LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             -HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             -HHHHHHc-cCC-CHHHHHHHHHHh
Confidence             2344444 666 888888776544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.33  E-value=0.00031  Score=59.47  Aligned_cols=141  Identities=16%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhh
Q 014864          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (417)
Q Consensus       162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  241 (417)
                      +.|..++.+++..++..++..+   .               ...+..++ ++++..++..++..+   .           
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~-----------  147 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P-----------  147 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C-----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C-----------
Confidence            3455566666777776665532   0               01222333 666777777666521   0           


Q ss_pred             hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                         .+.+..++.++++.|+..++..+                  ..+.+..++.++++.|+..+...+            
T Consensus       148 ---~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~d~~VR~aaa~~l------------  194 (244)
T 1lrv_A          148 ---PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEPEVRRIVASRL------------  194 (244)
T ss_dssp             ---GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSHHHHHHHHHHC------------
T ss_pred             ---HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCCCHHHHHHHHHhC------------
Confidence               11234555666777777666531                  123455666777888887776542            


Q ss_pred             HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L  394 (417)
                            ..+.|..++.++ ++.||..++..++                  .+.|..+ .++++.|+..|...|
T Consensus       195 ------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 ------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             ------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             ------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                  134577778887 8888888877653                  2344444 788899998887654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.31  E-value=0.0055  Score=52.23  Aligned_cols=176  Identities=10%  Similarity=0.082  Sum_probs=121.0

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhh----cCCCCHHHHHHHHHHHHHHhC----C
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL----LREDYPQLQFEAAWALTNIAS----G  147 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL----~~~~~~~~~~~a~~~L~~l~~----~  147 (417)
                      +.+...|.+.|...+..|+..|...+...   . +.++.  .+..++.++    .+.+ ..+...++..|..+..    .
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~-~~~~~--~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~  121 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---P-RSLLS--NSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDT  121 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---H-HHHHH--THHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---h-HHHHH--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhc
Confidence            56777888889999999999999887542   1 12211  122233332    3555 7888888888877643    1


Q ss_pred             CchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864          148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (417)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~  227 (417)
                      .......-. .-.+|.|+.-+.++.+.+++.+-.++..++.-.+.       ..+.+.++.-+ .+.+...+..++..+.
T Consensus       122 ~y~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~  192 (266)
T 2of3_A          122 ETPMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIE  192 (266)
T ss_dssp             TCCCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred             cccchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHH
Confidence            111111111 13679999999999999999988888777532221       12456677767 7788999999998888


Q ss_pred             hhhcCCCCCChhhhhchH---HHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          228 NFCRGKPQPPFDQVSPAL---PALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      .+.......    ....+   |.+..++.+.|..|+..|+.++..+-
T Consensus       193 ~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          193 YYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            887654322    13467   99999999999999999999988654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.12  E-value=0.012  Score=60.53  Aligned_cols=266  Identities=10%  Similarity=-0.011  Sum_probs=143.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hHHHHHHhcCCHHH
Q 014864          128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVP  205 (417)
Q Consensus       128 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~  205 (417)
                      .+ +.+...++.+|.....-  -....+++.+.++.++.+|.+  ++++..|+.+|..+.....  ..+..++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 78999999999998873  234556666888889988864  8999999999999985433  22222222201112


Q ss_pred             HHHHhcC-CCchhHHHHHHHHHhhhh------cCCCC-CC-------hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864          206 LLAQLNG-QPKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (417)
Q Consensus       206 L~~ll~~-~~~~~~~~~a~~~l~~l~------~~~~~-~~-------~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  270 (417)
                      .+..+.. ..|.++.+..+..+..++      ...+. ..       .....+.++.++.++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            2222211 456666655544443332      11121 11       133467899999999988888877666554443


Q ss_pred             ccC---------ChHHHHHHHHcCChHHHHhhcCCCC-----h-----------hhHHHHHHHHHHhhcCChHHHHHHHH
Q 014864          271 SDG---------TNDKIQAVIEAGVFPRLAEFLMHPS-----P-----------SVLIPALRTVGNIVTGDDMQTQCVIE  325 (417)
Q Consensus       271 ~~~---------~~~~~~~~~~~~~~~~L~~~l~~~~-----~-----------~v~~~a~~~L~~l~~~~~~~~~~~~~  325 (417)
                      ...         -......++.. +++.++.-+..++     .           +.|......+..++.-.+......+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~~-Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLKS-LLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHHH-HHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHHH-HHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            311         01222222222 4444555554321     0           23333332222222222222111000


Q ss_pred             cCChHHHHHhhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----CCCHHHHHHHhc-----cCCHHHHHHHHH
Q 014864          326 YQALPCLLNLLS---GNYKKSIKKEACWTVSNITAGNREQIQAVI-E----ANIIGPLVALLE-----NAEFDIKKEAAW  392 (417)
Q Consensus       326 ~~~l~~L~~ll~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~~l~-----~~~~~v~~~a~~  392 (417)
                      .-+.+.+...+.   +. ++..++.+..+|+.++.+......... .    ..+++.|..++.     ..++.|+..++|
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            011222333332   23 688899999999999886432111100 0    123455555555     678999999999


Q ss_pred             HHHHhhCC
Q 014864          393 AISNATSG  400 (417)
Q Consensus       393 ~L~nl~~~  400 (417)
                      +++..+..
T Consensus       518 ~l~rys~~  525 (980)
T 3ibv_A          518 ILVRYASF  525 (980)
T ss_dssp             HHHHTGGG
T ss_pred             HHHHHHHH
Confidence            99998766

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.89  E-value=0.029  Score=46.82  Aligned_cols=152  Identities=13%  Similarity=0.142  Sum_probs=102.9

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHH-------hhcCCCC-----hhhHHHHHHHHHHhhcCChHHHHH
Q 014864          256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLA-------EFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQC  322 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~-------~~l~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~  322 (417)
                      +++.++.|+.-|+.=-+..++....+-.+ |.+..|+       +.+..+.     ..-...|+..+..++++++ -...
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpe-tr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPE-TRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTT-THHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcc-hhhH
Confidence            44456666666655433333333333332 4444432       2233222     1223455666666676544 5555


Q ss_pred             HHHcCChHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       323 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      ++++++.-.|..+|+...    .+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.+..-.|.-|.+.+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            888888888888887652    35788899999999986 7889999999999999999999999999999999999888


Q ss_pred             hCCCCHHHHHHHH
Q 014864          398 TSGGTHEQIKYEH  410 (417)
Q Consensus       398 ~~~~~~~~~~~l~  410 (417)
                      ..  +...+.|++
T Consensus       173 L~--dd~GL~YiC  183 (268)
T 2fv2_A          173 LL--DDTGLAYIC  183 (268)
T ss_dssp             HH--SHHHHHHHT
T ss_pred             hc--cchhHHHHH
Confidence            76  455555554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.83  E-value=0.032  Score=46.17  Aligned_cols=144  Identities=15%  Similarity=0.045  Sum_probs=106.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchHHH
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD  195 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~  195 (417)
                      ++..-.+.+++. .++|..|+..|+.. .. .        ...++.+.. +..+++-.|++.+..+++.++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            566666777777 79999999998887 31 1        134566666 5557889999999999999984 33321  


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                            .++.+.... .+++..+++.|...+..-+.. + ........++|.|..+..+++.-|+..+.|.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  456666666 889999999999988765543 2 1223335678888888888889999999999999999998


Q ss_pred             HHHHHHHH
Q 014864          276 DKIQAVIE  283 (417)
Q Consensus       276 ~~~~~~~~  283 (417)
                      +-+..+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87655544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.78  E-value=0.029  Score=46.37  Aligned_cols=143  Identities=14%  Similarity=0.085  Sum_probs=104.3

Q ss_pred             hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh-hcCCCChhhHHHHHHHHHHhhc-CChHH
Q 014864          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVT-GDDMQ  319 (417)
Q Consensus       242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-~l~~~~~~v~~~a~~~L~~l~~-~~~~~  319 (417)
                      ...++....+..++..+++..|+..|+.+ ....         .+++.+.. +..++++.|+..+..+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            34556666677777789999999999888 3221         14566666 5567789999999999999984 3332 


Q ss_pred             HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-----CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-----GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (417)
Q Consensus       320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L  394 (417)
                             ..++.+..++.++ +..+|+.|.-.+.-.+.     .+++        -+++.|-.+..+++.-||+...|+|
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~--------~ll~iL~~L~~D~s~yVrKSVan~L  202 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPN--------EAIRRIADLKEDVSEYVRKSVGNAL  202 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHH--------HHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHH--------HHHHHHHHhcCChHHHHHHHHHHHH
Confidence                   2567889999999 99999999877543222     2222        2456666677788999999999999


Q ss_pred             HHhhCCCCHHHHHHHHhc
Q 014864          395 SNATSGGTHEQIKYEHTF  412 (417)
Q Consensus       395 ~nl~~~~~~~~~~~l~~~  412 (417)
                      ..++.. +++-+..+++.
T Consensus       203 rD~SK~-~Pd~V~~~~~~  219 (240)
T 3l9t_A          203 RDISKK-FPDLVKIELKN  219 (240)
T ss_dssp             HHHHTT-CHHHHHHHHHT
T ss_pred             HHHhhh-CHHHHHHHHHH
Confidence            999887 77877777653

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.75  E-value=0.21  Score=45.86  Aligned_cols=123  Identities=15%  Similarity=0.141  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH
Q 014864          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (417)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~  250 (417)
                      ++...+..|+..|.....+-|...+.     ++..++.++ .+.|..++..|+..|..+|.+      ..+..+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57889999999999999888887666     678899999 888999999999999999987      336778889999


Q ss_pred             hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864          251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       251 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                      +|+++++.-...+=++|..+...++..        .+..+...+..+++.+|..++..|..-.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            999998776666667776665544321        2333444444457788888888875443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.47  E-value=0.03  Score=46.67  Aligned_cols=195  Identities=13%  Similarity=0.116  Sum_probs=127.4

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHH-H-HHHhCCHHHHHHhh-------cCCC----CHHHHHHHHHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-E-VIRSGVVPRFVEFL-------LRED----YPQLQFEAAWAL  141 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~-~-~~~~g~i~~Lv~lL-------~~~~----~~~~~~~a~~~L  141 (417)
                      +..++..|.  +++.+..|+..|.+--..  -+... . .-.-|.+..|++-+       +.+.    .+.-...|+..|
T Consensus         5 i~qli~~L~--~p~~Re~AL~eLsk~Re~--~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            5 IYQWINELS--SPETRENALLELSKKRES--VPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             HHHHHHHTS--STTTHHHHHHHHHHHTTT--CTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CchhHHHHHHHHHHhhhc--cccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            455555555  445689999888875322  23222 2 23556666665422       2211    012234556666


Q ss_pred             HHHhCCCchhHHHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhh-CCCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864          142 TNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (417)
Q Consensus       142 ~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~  215 (417)
                      -.++++ ++.+..++++.+.-.|..+|+.     +.+-++-.++.++|.+. .++++....+++.++++.+++.+ +..+
T Consensus        81 QcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs  158 (268)
T 2fv2_A           81 QCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS  158 (268)
T ss_dssp             HHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred             HHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence            777775 8889999998888777778864     23578888999999988 56777888899999999999999 6666


Q ss_pred             hhHHHHHHHHHhhhhcCCC--------CCChhhhhchHHHHH-HhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          216 LSMLRNATWTLSNFCRGKP--------QPPFDQVSPALPALA-HLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~--------~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                      +-.+..|...+..+..++.        ...+..+..++..++ .+...+++.+..++++|...|+++..
T Consensus       159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            6667777777766655431        112222333443333 34456688899999999999987653

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.16  E-value=0.51  Score=43.34  Aligned_cols=245  Identities=13%  Similarity=0.033  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL  210 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll  210 (417)
                      +..+.-|+..+......-|+...     .++..++.++.+.+..||.+|+..|..+|.+ . ....     +...|+++|
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL  109 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL  109 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence            78999999999998887777655     5678899999999999999999999999988 3 2222     467889999


Q ss_pred             cCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHcCChHH
Q 014864          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPR  289 (417)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~  289 (417)
                       +..++.-...+-++|..+...+|       .+.+..+...+.++++.+++.++..|..=... ..+....-.+.-++..
T Consensus       110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~  181 (507)
T 3u0r_A          110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE  181 (507)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred             -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence             67777666777777777776543       34555555555557788888877766542211 0000001111124455


Q ss_pred             HHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhh------cCCCchhHHHHHHHHHH----HHhc-
Q 014864          290 LAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLL------SGNYKKSIKKEACWTVS----NITA-  357 (417)
Q Consensus       290 L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll------~~~~~~~v~~~a~~~L~----nl~~-  357 (417)
                      +.+.|.+-...-....+.+|+.+-.... ...+.     +++.+....      ... +++.......++.    -++. 
T Consensus       182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~  255 (507)
T 3u0r_A          182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN  255 (507)
T ss_dssp             HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred             HHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence            6666655544444445555555433322 22222     233333332      112 3333222222222    2222 


Q ss_pred             -CCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCC
Q 014864          358 -GNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGT  402 (417)
Q Consensus       358 -~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~~  402 (417)
                       .+.....++.+ .++|.+-.+-.. ...+.+...+.++.-++..++
T Consensus       256 v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          256 VHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             BCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence             24455555555 477744322221 122477788888888887765

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.15  E-value=1  Score=46.74  Aligned_cols=156  Identities=13%  Similarity=0.147  Sum_probs=90.6

Q ss_pred             HHHHHHhhcC--CChHHHHHHHHHHHHhccCChHH-HHHHHHcCChHHHHhhcCCCC-----hhhHHHHHHHHHHhhcCC
Q 014864          245 LPALAHLIHS--NDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       245 l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~~l~~~~-----~~v~~~a~~~L~~l~~~~  316 (417)
                      ++.+.+.+..  .+....+.+||+++.++..-.+. -..++- .+++.|+.+..++.     ..++...++++|....--
T Consensus       479 ~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl  557 (1073)
T 3gjx_A          479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL  557 (1073)
T ss_dssp             HHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence            3444444443  25788999999999997544322 112222 25677776665441     235555678888876432


Q ss_pred             hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHh----ccCCHHHHHH
Q 014864          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----ENAEFDIKKE  389 (417)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l----~~~~~~v~~~  389 (417)
                      ..... ++ ..++..+++.+.++ ++.|+..||.++..++..+....-....   ...++.+++.+    ..-.++-...
T Consensus       558 ~~h~~-~L-~~vl~~L~~~m~~~-~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~  634 (1073)
T 3gjx_A          558 RAHWK-FL-KTVVNKLFEFMHET-HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT  634 (1073)
T ss_dssp             HHCHH-HH-HHHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred             HhCHH-HH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence            22111 11 13466777888877 8999999999999998754432100000   01233333322    2335667777


Q ss_pred             HHHHHHHhhCCCCHH
Q 014864          390 AAWAISNATSGGTHE  404 (417)
Q Consensus       390 a~~~L~nl~~~~~~~  404 (417)
                      ...+++.++.....+
T Consensus       635 lyeav~~vi~~~p~~  649 (1073)
T 3gjx_A          635 FYEAVGYMIGAQTDQ  649 (1073)
T ss_dssp             HHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHhCCCc
Confidence            777788877776443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.11  E-value=0.33  Score=42.39  Aligned_cols=173  Identities=12%  Similarity=0.061  Sum_probs=105.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC----ChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g----~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      +..+..+++.+.  +.++-++..++-.+.+ +.....+.+..    ++..+...+.+ ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            456666664443  5667777777766653 44444443322    22234444443 456678899999999987766 


Q ss_pred             HHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHH
Q 014864          193 CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWAL  267 (417)
Q Consensus       193 ~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l  267 (417)
                      .++.+..  ....++..+.   .+.+..++..++.++.|++... ..........++..+..++.. .|.+....++.+|
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5666554  2333444332   4567889999999999998753 111223333455555566643 4889999999999


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (417)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~  296 (417)
                      ++|...+.+..+....-|+-..+-.....
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998766554444444554544445544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.97  E-value=0.28  Score=41.09  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             HHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhC
Q 014864           78 MVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        78 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l~~  146 (417)
                      +++.|++.. +..-...+..|+..+...+..-++.+ ..+++..|+.+|..    .      .+...+..++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            445555432 22223345556555554322334456 46667778877753    1      125778899999999987


Q ss_pred             CCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hH-HHHHH----------hcCCHHHHHHHhcCC
Q 014864          147 GTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQ  213 (417)
Q Consensus       147 ~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~  213 (417)
                      . ......+.. .+.+..+...|.++++.++..++..|+.+|..+. .. ...++          +..-..+++..+..+
T Consensus        84 ~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 N-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             S-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             C-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence            5 445555554 5788999999999999999999999998885543 12 22221          222344566666434


Q ss_pred             CchhHHHHHHHHHhhhhcCC
Q 014864          214 PKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~  233 (417)
                      .+.+.+..++..+-.+....
T Consensus       163 ~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHCCC
Confidence            45555555555555555543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.96  E-value=0.76  Score=40.25  Aligned_cols=319  Identities=14%  Similarity=0.142  Sum_probs=175.2

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----CC-------CHHHHHHHHHHHHHHh
Q 014864           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----ED-------YPQLQFEAAWALTNIA  145 (417)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~-------~~~~~~~a~~~L~~l~  145 (417)
                      .+....+..||.-++.-+..++..+..++-..++..--.|.+..++..+-+    ..       ++.+-..-+.+|..+.
T Consensus        10 Air~WFnTpDPqrrfhMA~tiReWvrrDKlaqvDqAnlPnCiq~lLnII~DGlKPQpvQlP~sYYaQLw~~LLDIL~RlT   89 (619)
T 3c2g_A           10 AIRLWFNTPDPMQRLHMAKTIRTWIRQDKFAQVDQANMPNCVQQILNIIYDGLKPQPVQLPISYYAQLWYNLLDILRRFT   89 (619)
T ss_dssp             HHHHGGGCCCHHHHHHHHHHHHHHHHHHTTTTSCGGGHHHHHHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhhhhhcccCcccCchHHHHHHHHHhcCCCcccccCChhHHHHHHHHHHHHHHHHh
Confidence            445677789999999999999988765433333332223445555554432    11       1233444455555555


Q ss_pred             CCC--chhHHHHHhC------C---ChhHHHHhhCC-----CC-HHHHHHHHHHHHHhhCC--CchHHHHHHhcCCHH--
Q 014864          146 SGT--SEHTKVVIDH------G---AVPIFVKLLYS-----PS-DDVREQAVWALGNIAGD--SPRCRDLVLSQGGLV--  204 (417)
Q Consensus       146 ~~~--~~~~~~i~~~------g---~i~~L~~ll~~-----~~-~~i~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~--  204 (417)
                      ...  ..+...++..      |   .=+.++.+++-     ++ .....+....+.|+..+  .+..|..+...--..  
T Consensus        90 ~~~it~PyIHqvVQlF~PreNgp~dFRdLICN~iq~~~~~d~hm~~CAkQvF~Ife~ii~~~KneKLR~dFAr~~Kfekl  169 (619)
T 3c2g_A           90 FLPIISPYIHQVVQMFCPRENGPQDFRELICNLISLNWQKDPHMKHCANQVFQIFNCIIMGVKNEKLRTEFAQHLKFEKL  169 (619)
T ss_dssp             HCGGGGGGHHHHHHTTSCSSSSTTSHHHHHHHHTCGGGGGSTTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCSHHH
T ss_pred             hccccchHHHHHHHHhccCCCCchhHHHHHHHhcCccccCChHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhHHHHH
Confidence            421  1222222211      1   11233333321     11 22345556666776642  333444444332233  


Q ss_pred             --HHHHHhcCCC-----chhHHHHHHH-----------HHhhhhcCC-CCCCh---hhhhchHHHHHHhhcCCCh-----
Q 014864          205 --PLLAQLNGQP-----KLSMLRNATW-----------TLSNFCRGK-PQPPF---DQVSPALPALAHLIHSNDD-----  257 (417)
Q Consensus       205 --~L~~ll~~~~-----~~~~~~~a~~-----------~l~~l~~~~-~~~~~---~~~~~~l~~L~~ll~~~~~-----  257 (417)
                        .|+..+...-     ++.+..-.-.           .+++=-... +.++.   ....+++-.--.++.-.|+     
T Consensus       170 ~gtL~~yl~pq~~p~~iNPtil~~lRFiISKDt~lKd~~IWn~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~q  249 (619)
T 3c2g_A          170 VGTLSEYFNPQVHPGMINPAIFIIFRFIISKDTRLKDYFIWNNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQ  249 (619)
T ss_dssp             HHHHHGGGCTTSCGGGCCTHHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred             HHHHHHhcCCCCCccccCchhhhhhHhhhcccceeccceeeCCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhcccC
Confidence              3444442222     2222211111           111111111 11111   1223333333344443332     


Q ss_pred             --H------HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 014864          258 --E------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL  329 (417)
Q Consensus       258 --~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  329 (417)
                        +      |...+...| +|.-++.+.+.-+++.+++..+...+..++.++....+..|-..+....-..  .--...+
T Consensus       250 Npel~~LiQVvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~L  326 (619)
T 3c2g_A          250 NPELAHLIQVIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENIL  326 (619)
T ss_dssp             CHHHHHHHHHHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHH
T ss_pred             CHHHHHHHHHHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccc
Confidence              2      333344444 4445667778889999999999999999999999999888877653322110  0012567


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-------CHHHHHHHHHHHHHhh
Q 014864          330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWAISNAT  398 (417)
Q Consensus       330 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-------~~~v~~~a~~~L~nl~  398 (417)
                      |.++..+.-..+.++.......|+|..++.....+..+..|.++.|...+...       +..-++-||..++|..
T Consensus       327 PFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          327 PFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            88888876554889999999999999998777777778899999998887432       3455677777777654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.84  E-value=0.52  Score=42.68  Aligned_cols=158  Identities=11%  Similarity=0.094  Sum_probs=104.0

Q ss_pred             HHHHHhhhcCCCh-HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----------CCCHHHHHHHHHHHHH
Q 014864           75 LPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTN  143 (417)
Q Consensus        75 l~~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~~  143 (417)
                      -..+++.|.++.. ......+..|+..+...+..-++.++ .+++..|+.+|..          ..+...+..++.||..
T Consensus        68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka  146 (383)
T 3eg5_B           68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            3556777766432 22344677777666654233345676 5668888888752          1125788999999999


Q ss_pred             HhCCCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hH-HHHH----------HhcCCHHHHHHHh
Q 014864          144 IASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLV----------LSQGGLVPLLAQL  210 (417)
Q Consensus       144 l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~----------~~~g~i~~L~~ll  210 (417)
                      +... ......++. ...+..|...+.++++.++..++..|+-+|.... .. ...+          .+..-...++..+
T Consensus       147 lmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L  225 (383)
T 3eg5_B          147 FMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  225 (383)
T ss_dssp             HTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred             Hhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            9875 444454554 5788999999999999999999999999996543 21 2222          2333466777777


Q ss_pred             cCCCchhHHHHHHHHHhhhhcCCC
Q 014864          211 NGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      ....+.+....++..+-.+....+
T Consensus       226 ~~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          226 KSGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCC
Confidence            444566777766666666666543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.73  E-value=1.3  Score=46.85  Aligned_cols=300  Identities=9%  Similarity=0.054  Sum_probs=168.5

Q ss_pred             CHHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhCC---
Q 014864           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG---  147 (417)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~---  147 (417)
                      .+..++..+.++  +...+..|-..|..+-..  ++         ....+...|. .+.++.+|..|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            345556555554  667788888888776332  11         2333443332 333489999999999987642   


Q ss_pred             --CchhHHHHHhCCChhHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchhHHHH
Q 014864          148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (417)
Q Consensus       148 --~~~~~~~i~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~  221 (417)
                        +++.+..+.+ .++..+......   ....++...+.++..|+... +.     --.+.++.+++++..  ++.....
T Consensus        81 ~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~--~~~~~e~  152 (1204)
T 3a6p_A           81 GMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ--GETQTEL  152 (1204)
T ss_dssp             GSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT--CHHHHHH
T ss_pred             cCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC--CHHHHHH
Confidence              2334443332 445554443221   45889999999999987432 11     012356778887733  4455677


Q ss_pred             HHHHHhhhhcCC---CCCChh-------hh----hchHHHHHHhhcC-------------------CChHHHHHHHHHHH
Q 014864          222 ATWTLSNFCRGK---PQPPFD-------QV----SPALPALAHLIHS-------------------NDDEVLTDACWALS  268 (417)
Q Consensus       222 a~~~l~~l~~~~---~~~~~~-------~~----~~~l~~L~~ll~~-------------------~~~~v~~~a~~~l~  268 (417)
                      ++.+|..++...   ......       .+    ..+++.+..++..                   .+..+...++.++.
T Consensus       153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence            888888887542   111100       01    1333444444432                   12346667777777


Q ss_pred             HhccCChHHHHHHHHcC--ChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh--HHHHHHHHc---CChHHHHHhhc----
Q 014864          269 YLSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIEY---QALPCLLNLLS----  337 (417)
Q Consensus       269 ~l~~~~~~~~~~~~~~~--~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~---~~l~~L~~ll~----  337 (417)
                      +.....+-  ..+.+..  +++.+..++.  ++.++..|+.+|..++....  .....++..   ..+..++..+.    
T Consensus       233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~  308 (1204)
T 3a6p_A          233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG  308 (1204)
T ss_dssp             TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred             HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence            65544332  2233332  6677776665  46789999999999997552  221112211   11234444432    


Q ss_pred             ---CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          338 ---GNYKKSIKKEACWTVSNITAGNREQIQAVIE-----------ANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       338 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                         +..+.++.+..+..+..+..    ....++.           .++++.++.+..+++..+-..++.....+...
T Consensus       309 ~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          309 GGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence               11145677777777777762    1222222           14577788888888878888877666656544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.50  E-value=0.66  Score=48.23  Aligned_cols=166  Identities=14%  Similarity=0.133  Sum_probs=109.9

Q ss_pred             ChhHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhh
Q 014864          160 AVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSN  228 (417)
Q Consensus       160 ~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~  228 (417)
                      .+..+..++.+    .++.+++.++.+++.++.    +.+.|..     ..++.+...+.   ...+..-+..++.+|.|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            34556666665    567788888888888752    2222211     12344444331   34467778889999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc--CCCCh
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSP  299 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l--~~~~~  299 (417)
                      +...          ..++.|.+++..       ....++..|+++|..++...+..++        +.++++.  ...++
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            9863          457777777742       1356888999999999877665443        5567777  34568


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      ++|..|+..|-..  .++ .       ..+..+...+..+.+..|.......|.+++..
T Consensus       529 EvRiaA~~~Lm~t--~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          529 ELRIRSCIVFFES--KPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHHT--CCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH--CcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            8999998887432  222 2       12556777777765888988888899999874

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.42  E-value=2.3  Score=44.19  Aligned_cols=172  Identities=15%  Similarity=0.172  Sum_probs=110.3

Q ss_pred             HHHHHHHhcCC---CchhHHHHHHHHHhhh----hcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864          203 LVPLLAQLNGQ---PKLSMLRNATWTLSNF----CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (417)
Q Consensus       203 i~~L~~ll~~~---~~~~~~~~a~~~l~~l----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  275 (417)
                      +..+..++...   .++.+...++-+++.|    |...+......+..+...+...+...+.+-..-++.+|+|+..  +
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h
Confidence            44455555221   2455556566555555    4443444444455666666677777777778889999999853  2


Q ss_pred             HHHHHHHHcCChHHHHhhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-CCchhHHHH
Q 014864          276 DKIQAVIEAGVFPRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKE  347 (417)
Q Consensus       276 ~~~~~~~~~~~~~~L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~  347 (417)
                               ..++.|.+++..       ....++..|+++|..+....+....        +.++.++.+ ..++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     245666677642       1346888899999999876665443        346666632 238899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCH
Q 014864          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH  403 (417)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~~~  403 (417)
                      |+..|.... -+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            999886432 1222         34455555554 5788888888888888887654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.24  E-value=0.5  Score=41.19  Aligned_cols=143  Identities=8%  Similarity=0.003  Sum_probs=86.9

Q ss_pred             HHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHc--CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864          245 LPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (417)
Q Consensus       245 l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~  321 (417)
                      +..+...+..+ .+..+--++++++|+........ .+...  .+++.+...+.+++..++..+...+-|++........
T Consensus       149 ~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~-~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~  227 (304)
T 3ebb_A          149 SSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK-LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN  227 (304)
T ss_dssp             HHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH-HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH-HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence            33444555432 45567778999999987765432 23321  3556666666677888999998888888753211000


Q ss_pred             HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHH
Q 014864          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKK  388 (417)
Q Consensus       322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~  388 (417)
                      .-....++..+..++....+.+....+..+|+++..+.++..+.....|+-..+-.+.+. .+.+|..
T Consensus       228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~  295 (304)
T 3ebb_A          228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE  295 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred             chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence            000112455666667655588999999999999998766554444445555554445544 3444443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.07  E-value=0.39  Score=41.99  Aligned_cols=111  Identities=18%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             HHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-CCChHHHH
Q 014864          183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT  261 (417)
Q Consensus       183 L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~  261 (417)
                      |.|+..++....+-++..+++..+...+ +.++.++.+..+..|...+.... .........+|.++..+. ++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEE
Confidence            4556666666778888999999999999 88899999999999988887642 222334678888888774 56889999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~  295 (417)
                      .....|+|...+.....+..+..|.++.|-..+.
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            9999999999998888888888999998887764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.71  E-value=2  Score=38.90  Aligned_cols=157  Identities=11%  Similarity=0.105  Sum_probs=99.6

Q ss_pred             HHHHhhhcCCChHH-HHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHH
Q 014864           76 PVMVAGVWSNDSGV-QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNI  144 (417)
Q Consensus        76 ~~l~~~l~s~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l  144 (417)
                      ..+++.|.+..... ....+..|+..+...+..-++.+. .+++..|+.+|..    .      .+...+..++.||..+
T Consensus         7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            34556665543221 123456666555543223344565 5667777777742    1      1257889999999999


Q ss_pred             hCCCchhHHHHH-hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hH-HHHH----------HhcCCHHHHHHHhc
Q 014864          145 ASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLV----------LSQGGLVPLLAQLN  211 (417)
Q Consensus       145 ~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~----------~~~g~i~~L~~ll~  211 (417)
                      ... ......+. ..+++..+...|.++++.++..++..|..+|..+. .. ...+          -+..-..+++..+.
T Consensus        86 mN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~  164 (386)
T 2bnx_A           86 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  164 (386)
T ss_dssp             TSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred             hCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            875 44444444 45788999999999999999999999988886443 21 2222          13334566777775


Q ss_pred             CCCchhHHHHHHHHHhhhhcCCC
Q 014864          212 GQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .+.+.+....++..+-.+....+
T Consensus       165 ~~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          165 SGTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCS
T ss_pred             cCChHHHHHHHHHHHHHHHCCCC
Confidence            56677777777777777776644

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.37  E-value=2.1  Score=36.23  Aligned_cols=88  Identities=11%  Similarity=0.106  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (417)
                      ..+...+..++.++...++....     .+++.++++..+.+ .++|...+..+...+...++...     ..++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            68888999999977654233333     34788888877766 89999999999998864443322     456788888


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 014864          168 LYSPSDDVREQAVWALGNI  186 (417)
Q Consensus       168 l~~~~~~i~~~a~~~L~nl  186 (417)
                      +.+.++.+...++.+.+++
T Consensus        99 l~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            9989999999999888776

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=94.05  E-value=3.2  Score=37.29  Aligned_cols=88  Identities=10%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (417)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (417)
                      ..+...+..+..++... ++.    .-.++++.++++-.+.+ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888899999876543 332    22567999999988888 89999999999988874444322     356788888


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 014864          168 LYSPSDDVREQAVWALGNI  186 (417)
Q Consensus       168 l~~~~~~i~~~a~~~L~nl  186 (417)
                      |.+.++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            9889999999999888886

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.70  E-value=1.4  Score=46.57  Aligned_cols=259  Identities=11%  Similarity=0.052  Sum_probs=142.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----Cc
Q 014864          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SP  191 (417)
Q Consensus       119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~-----~~  191 (417)
                      ..+-.+++.+.+...+.+|-..|.++-.. +         .+...+...|  .+.+..++..|+.+|.|....     ++
T Consensus        15 ~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~   84 (1204)
T 3a6p_A           15 KAVTVMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR   84 (1204)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence            33334444322267888888888776442 2         2333333333  356789999999999987632     23


Q ss_pred             hHHHHHHhcCCHHHHHHHhcC--CCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH
Q 014864          192 RCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (417)
Q Consensus       192 ~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  268 (417)
                      +.+..+. ...+..+......  ..+..++..++.++..++... |.    .....++.++.++.+ ++.....++.+|.
T Consensus        85 e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~  158 (1204)
T 3a6p_A           85 LEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILL  158 (1204)
T ss_dssp             HHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence            3333322 2233333322111  145778888899999988764 31    234677888888865 4555667777777


Q ss_pred             HhccC-------ChHHHHH---HHHc---CChHHHHhhcCC-------------------CChhhHHHHHHHHHHhhcCC
Q 014864          269 YLSDG-------TNDKIQA---VIEA---GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGD  316 (417)
Q Consensus       269 ~l~~~-------~~~~~~~---~~~~---~~~~~L~~~l~~-------------------~~~~v~~~a~~~L~~l~~~~  316 (417)
                      .+++.       ...+...   .+..   .+++.+..++..                   .+..+...++.++.+...--
T Consensus       159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi  238 (1204)
T 3a6p_A          159 RLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV  238 (1204)
T ss_dssp             HHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence            77532       1111111   1111   122333333322                   12346667777777666543


Q ss_pred             hHHHHHHHHcC--ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHC---CCHHHHHHHh--------cc
Q 014864          317 DMQTQCVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIEA---NIIGPLVALL--------EN  381 (417)
Q Consensus       317 ~~~~~~~~~~~--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~~l--------~~  381 (417)
                      +.  ..+.+..  +++.++.++.   ++.++..|+.+|..++...  ++....++..   ..+..++..+        .+
T Consensus       239 ~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e  313 (1204)
T 3a6p_A          239 SM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE  313 (1204)
T ss_dssp             CH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH
T ss_pred             CH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCcc
Confidence            32  2233332  6777777665   5689999999999999732  4433333320   1123444443        22


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 014864          382 AEFDIKKEAAWAISNAT  398 (417)
Q Consensus       382 ~~~~v~~~a~~~L~nl~  398 (417)
                      .+.++.+..+..+..+.
T Consensus       314 ~d~e~~k~l~~ll~~lg  330 (1204)
T 3a6p_A          314 KHYVFLKRLCQVLCALG  330 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            24667777777777765

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=93.58  E-value=4  Score=36.81  Aligned_cols=237  Identities=14%  Similarity=0.050  Sum_probs=123.4

Q ss_pred             hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ......++...+..|+.+++++|+.-|+..-.+|..+-+.-...|..+... +-..+.+.+.....-.-....+.+++.+
T Consensus       120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgsI  198 (403)
T 3fga_B          120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI  198 (403)
T ss_dssp             HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence            333445555667889999999999999999999998876655555544332 3344555553333333344566666666


Q ss_pred             hcCCCCCChh-hhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864          230 CRGKPQPPFD-QVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (417)
Q Consensus       230 ~~~~~~~~~~-~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~  307 (417)
                      ..+-..+... ...-....|+.+-....- ........|+......++.....     ++..|+..=-..+..-...-+.
T Consensus       199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~  273 (403)
T 3fga_B          199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLN  273 (403)
T ss_dssp             HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHH
T ss_pred             HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHH
Confidence            6654333222 222234455555544432 22223333444333333332221     2222333222233333344445


Q ss_pred             HHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHh----
Q 014864          308 TVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----  379 (417)
Q Consensus       308 ~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l----  379 (417)
                      -+..+...-+ .... -+...+...+...+.+. +..|-+.|.....|     + .+-.++.   ..++|.+...|    
T Consensus       274 Ele~iLe~~~~~~f~-~i~~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~  345 (403)
T 3fga_B          274 ELEEILDVIEPSEFV-KIMEPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNS  345 (403)
T ss_dssp             HHHHHHTTCCHHHHH-HHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHH-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5555554333 2222 22224566777778888 88888777654321     1 2222221   12344444444    


Q ss_pred             ccC-CHHHHHHHHHHHHHhhCC
Q 014864          380 ENA-EFDIKKEAAWAISNATSG  400 (417)
Q Consensus       380 ~~~-~~~v~~~a~~~L~nl~~~  400 (417)
                      ... +..++..+..++.-+..-
T Consensus       346 ~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          346 KTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHccCHHHHHHHHHHHHHHHHh
Confidence            333 678888888888776543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.55  E-value=2.8  Score=34.89  Aligned_cols=166  Identities=11%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             CchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCch
Q 014864          148 TSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL  216 (417)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  216 (417)
                      +..+.+.+ ..+++..|+.+|..           .+......++.||..+.....+....+...+.+..+...+ .++++
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~  110 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP  110 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSH
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCc
Confidence            34555666 35677777776642           1456788899999998877665555555556677777777 78888


Q ss_pred             hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (417)
Q Consensus       217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~  296 (417)
                      .++..++..|..+|..+...      |..+.++..+.               +...        .-+..-+..++..+..
T Consensus       111 ~~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~---------------~~~~--------~~e~~RF~~lv~~l~~  161 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERAE--------MDEVERFQPLLDGLKS  161 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSSS------CHHHHHHHHHH---------------HHHH--------HHTSCTTHHHHHTTST
T ss_pred             hHHHHHHHHHHHHHhCCCCC------ChHHHHHHHHH---------------HHHH--------hCCcchHHHHHHHHhc
Confidence            99999999999998874310      10222222221               1100        0112234556666664


Q ss_pred             -CChhhHHHHHHHHHHhhcCChH------HHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864          297 -PSPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIK  345 (417)
Q Consensus       297 -~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~ll~~~~~~~v~  345 (417)
                       .+.+.+..++..+..+..+.++      .+..+...|+.+.+-.+=... ++.+.
T Consensus       162 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~  216 (233)
T 2f31_A          162 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  216 (233)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHH
Confidence             4566777777777777766542      223344556666555444333 44443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=93.53  E-value=1  Score=38.76  Aligned_cols=137  Identities=11%  Similarity=0.071  Sum_probs=90.5

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHH-HcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc--CChHHH
Q 014864          256 DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QALPCL  332 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L  332 (417)
                      |.+-...++..|..++..-....+.+- +...+..|+ +.....+.++..|.++|+...++++.....+.+.  .++..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            455677888888888765444444333 333444454 3344567899999999999999999988877753  444444


Q ss_pred             HHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhh
Q 014864          333 LNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNAT  398 (417)
Q Consensus       333 ~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~  398 (417)
                      +.-|..    .  ....+.+.-+.+|.-+...+..    + ....+..|.+++...  ++.++..++..+..+.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            444332    1  1346677777788877765421    1 134567777877766  8899999988888877

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.32  E-value=1.9  Score=39.00  Aligned_cols=123  Identities=11%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q 014864          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ-TQCVI---------  324 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~---------  324 (417)
                      +......++.||..+.....+....+-....+..|+..+.+..+.++..++..|+.+|..+. .. ...++         
T Consensus       133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~  212 (383)
T 3eg5_B          133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  212 (383)
T ss_dssp             CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence            45777888899988886665554444445778999999999999999999999999987653 21 22232         


Q ss_pred             -HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHH----HHHHHHCCCHHHHHHH
Q 014864          325 -EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQ----IQAVIEANIIGPLVAL  378 (417)
Q Consensus       325 -~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~----~~~l~~~~~i~~L~~~  378 (417)
                       +..-+..++..+.+..+.+.+..+...+-.+..+.  .+.    +..+...|+.+.+-.+
T Consensus       213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l  273 (383)
T 3eg5_B          213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  273 (383)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence             23446778888876535555544444444444432  222    2334467776666553

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=92.48  E-value=0.11  Score=29.24  Aligned_cols=38  Identities=32%  Similarity=0.571  Sum_probs=27.5

Q ss_pred             HhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhh
Q 014864           11 SRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRR   50 (417)
Q Consensus        11 ~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~   50 (417)
                      +|...||+ +...++..++| + ..+..|++|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence            57889999 45555555444 4 678889999998887773

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.55  E-value=6.5  Score=35.53  Aligned_cols=131  Identities=12%  Similarity=0.095  Sum_probs=81.4

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q 014864          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ-TQCVI---------  324 (417)
Q Consensus       256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~---------  324 (417)
                      +......++.||..+.....+....+-..+.+..+...|.++++.++..++..|+.+|..+. .. ...++         
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            45677888899998886666555445555788999999999999999999999998887554 11 22222         


Q ss_pred             -HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH--HH----HHHHHHCCCHHHHHHHhccCCHHH
Q 014864          325 -EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR--EQ----IQAVIEANIIGPLVALLENAEFDI  386 (417)
Q Consensus       325 -~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~--~~----~~~l~~~~~i~~L~~~l~~~~~~v  386 (417)
                       +..-+..++..+....+.+.+..+...+-.+..+.+  +.    +..+...|+.+.+-.+-...++++
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence             223455677777755355555554444444444332  22    233445677666544433344443

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=90.32  E-value=11  Score=34.65  Aligned_cols=241  Identities=14%  Similarity=0.046  Sum_probs=129.9

Q ss_pred             chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      +......++...+..|+.+++++|+.-++..-.+|..+-+.-...|..+... +-..+.+.+.......-....+.+++.
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            3334555566778889999999999999999999988876555455554432 344556666444444445567777777


Q ss_pred             hhcCCCCCChh-hhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHH
Q 014864          229 FCRGKPQPPFD-QVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (417)
Q Consensus       229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~  306 (417)
                      +..+-..+... ...-....|+.+.....- ........|+......++.....     ++..|+..=-..+..-...-+
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL  305 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFL  305 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHH
Confidence            77765333222 222334455666554432 22223334444333333322221     222233332223333334445


Q ss_pred             HHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHhc--
Q 014864          307 RTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLE--  380 (417)
Q Consensus       307 ~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l~--  380 (417)
                      .-|..+....+ ..... +...+...+...+.+. +..|-+.|+....|     +. +..++.   ..++|.++..|.  
T Consensus       306 ~eleeile~~~~~ef~~-i~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~  377 (449)
T 2npp_B          306 NELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRN  377 (449)
T ss_dssp             HHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHH
Confidence            55555654333 22222 2234566777888887 88888877654322     21 112221   124566666552  


Q ss_pred             --cC-CHHHHHHHHHHHHHhhCCCCHH
Q 014864          381 --NA-EFDIKKEAAWAISNATSGGTHE  404 (417)
Q Consensus       381 --~~-~~~v~~~a~~~L~nl~~~~~~~  404 (417)
                        .. +..++..|..++.-+..- +++
T Consensus       378 s~~HWn~~V~~la~~vlk~l~e~-d~~  403 (449)
T 2npp_B          378 SKTHWNKTIHGLIYNALKLFMEM-NQK  403 (449)
T ss_dssp             TTCCSSTTHHHHHHHHHHHHHTT-CHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHH-CHH
Confidence              22 567888888888766554 443

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=89.17  E-value=7.8  Score=35.59  Aligned_cols=226  Identities=13%  Similarity=0.077  Sum_probs=115.8

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-----c
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S  149 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-----~  149 (417)
                      +..|++.+.|+|+..+...-..|..+-...  .....++...+-..+.+++-......--.+.+.+++.+..|-     .
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            556777778888877777766676664432  222223333334455555543321233456777777777763     2


Q ss_pred             hhHHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      +++..+     ...|+.+.+...- .-..+-..++..+...++.....     ++..|++.- ..++..-....+.-+..
T Consensus       242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee  310 (449)
T 2npp_B          242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE  310 (449)
T ss_dssp             HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence            222222     2233334433221 12234455555555555543332     233444443 33333333333344444


Q ss_pred             hhcCCCCCChh-hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcC-----CCCh
Q 014864          229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLM-----HPSP  299 (417)
Q Consensus       229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~-----~~~~  299 (417)
                      +...-+...+. ....++..+..++.+++-.|.+.|+....     ++.... ++..   .++|.+...|.     |-+.
T Consensus       311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~-li~~n~~~IlPii~p~L~~~s~~HWn~  384 (449)
T 2npp_B          311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMS-LISDNAAKILPIMFPSLYRNSKTHWNK  384 (449)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHH-HHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHH-HHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence            44432222222 23566777888889999898888764332     221121 2221   24565555542     3367


Q ss_pred             hhHHHHHHHHHHhhcCChHH
Q 014864          300 SVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~~~  319 (417)
                      .++..+..++..+...++..
T Consensus       385 ~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          385 TIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             THHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHCHHH
Confidence            78888988888777666644

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=88.83  E-value=4.8  Score=36.33  Aligned_cols=224  Identities=13%  Similarity=0.089  Sum_probs=104.0

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-----c
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S  149 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-----~  149 (417)
                      +..|+..+.|+|+..+...-..|..+-..  -.....++...+-..+.+++-......-..+.+.+++.+..|-     .
T Consensus       131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke  208 (403)
T 3fga_B          131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  208 (403)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence            44566666677776666665555554322  1222223333333444444433221122334555666655543     1


Q ss_pred             hhHHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       150 ~~~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                      +.+..+.     ..|+.+.+.+.- .-..+...++..+...++.....     ++..|++.- ..++..-...-+.-+..
T Consensus       209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~  277 (403)
T 3fga_B          209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE  277 (403)
T ss_dssp             HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence            2222211     222223333221 12234555565565555543332     233344433 33333333333344444


Q ss_pred             hhcCCCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhc-----CCCCh
Q 014864          229 FCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----MHPSP  299 (417)
Q Consensus       229 l~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l-----~~~~~  299 (417)
                      +...-+...+ ......+..+..++.+++-.|.+.|+...     +++.... ++..   .++|.+...|     .|-+.
T Consensus       278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w-----nNe~i~~-li~~n~~~IlPii~p~L~~~~~~HWn~  351 (403)
T 3fga_B          278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMS-LISDNAAKILPIMFPSLYRNSKTHWNK  351 (403)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHH-HHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh-----ccHHHHH-HHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence            4443222222 22245667777888888888888776433     1222111 2221   2344443333     24477


Q ss_pred             hhHHHHHHHHHHhhcCCh
Q 014864          300 SVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~  317 (417)
                      .++..+..++..+...++
T Consensus       352 ~v~~l~~~vlk~l~e~d~  369 (403)
T 3fga_B          352 TIHGLIYNALKLFMEMNQ  369 (403)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhCH
Confidence            888888888877765443

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=84.94  E-value=38  Score=34.87  Aligned_cols=114  Identities=12%  Similarity=0.051  Sum_probs=67.4

Q ss_pred             ChHHHHhhcCCCCh-hhHHH-HHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh-----
Q 014864          286 VFPRLAEFLMHPSP-SVLIP-ALRTVGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT-----  356 (417)
Q Consensus       286 ~~~~L~~~l~~~~~-~v~~~-a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~-----  356 (417)
                      ++|.++.+....+. ++... |..++..++...-  +....     ++..+....+++.+. .|..++..+..+.     
T Consensus       761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f  834 (997)
T 1vsy_5          761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELL  834 (997)
T ss_dssp             TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH
Confidence            67777666665554 55555 5556666654332  22222     334444445522266 7777655544333     


Q ss_pred             cCCHHHHHHHHHCCCHHHHHHHhccCC-HHHHHHHHHHHHHhhCCC-CHHHHHHHH
Q 014864          357 AGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG-THEQIKYEH  410 (417)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~-~~~~~~~l~  410 (417)
                      .-++++..     .+...++.+|.+.. .+||..|..+|+-+..+. .......++
T Consensus       835 ~l~~~~~~-----~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li  885 (997)
T 1vsy_5          835 QLTEEEKN-----KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLI  885 (997)
T ss_dssp             TSCTTHHH-----HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred             HcCHHHHH-----HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHH
Confidence            22233332     45678888999999 999999999999998776 534333333

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=83.46  E-value=13  Score=33.32  Aligned_cols=192  Identities=14%  Similarity=0.046  Sum_probs=100.0

Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      ....++...+..|+.+++++|+.-|+....+|..+-+.-...|..+... +-..+.+.+.......-...++++++.+..
T Consensus       167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsIIn  245 (392)
T 2jak_A          167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN  245 (392)
T ss_dssp             HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence            3444555678889999999999999999999988876555555554332 445566776444444455667777777777


Q ss_pred             CCCCCChhhh-hchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          232 GKPQPPFDQV-SPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       232 ~~~~~~~~~~-~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                      +-..+..... .-....|+.+.....- ........|+......++.....     ++..|+..=-..+..-...-+.-|
T Consensus       246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el  320 (392)
T 2jak_A          246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL  320 (392)
T ss_dssp             TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence            6533322222 2234455565554421 12222333333333333322221     222232222222222233334444


Q ss_pred             HHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864          310 GNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (417)
Q Consensus       310 ~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  351 (417)
                      ..+....+ .... -+...+...+...+.+. +..|-+.|...
T Consensus       321 eeiLe~~~~~~f~-~i~~~lF~~la~ci~S~-hfqVAErAL~~  361 (392)
T 2jak_A          321 EEILDVIEPSEFV-KIMEPLFRQLAKCVSSP-HFQVAERALYY  361 (392)
T ss_dssp             HHHHHTCCHHHHH-HHHHHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred             HHHHHhCCHHHHH-HHHHHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence            44443332 2222 12234556667777776 77777766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.11  E-value=1.7  Score=33.90  Aligned_cols=74  Identities=9%  Similarity=0.001  Sum_probs=53.2

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      +++..+.+.|++.++.++..|+..|-.++.........++....++..|+.+++...++.++..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            45677777888888999999988888887664344444566677788888888753447888887776666554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=82.35  E-value=11  Score=32.48  Aligned_cols=147  Identities=10%  Similarity=-0.016  Sum_probs=89.8

Q ss_pred             HHHHHhhhcCC------ChHHHHHHHHHHHHhhhCCCCCcHHHHHH--hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           75 LPVMVAGVWSN------DSGVQYECTTQFRKLLSIERSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        75 l~~l~~~l~s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      +..+...++++      |......|+..|..+.-.  -..--.++.  ...+..|+ +..... +.++..|+++++....
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssLR   99 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHHc
Confidence            45555566665      455566777777776421  233333443  23333444 334444 7899999999999999


Q ss_pred             CCchhHHHHHhC--CChhHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--c
Q 014864          147 GTSEHTKVVIDH--GAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--K  215 (417)
Q Consensus       147 ~~~~~~~~i~~~--g~i~~L~~ll~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~  215 (417)
                      .+|.....+.+.  ..+..++.-|..       ....+...-+.+|--|..++..+.     ..++..|.+++. ..  +
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~-~~~~d  173 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYE-RNNKD  173 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHH-HTTTC
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHc-cCCCC
Confidence            999998887764  344444433321       234566666777777776654332     346677777773 34  7


Q ss_pred             hhHHHHHHHHHhhhhc
Q 014864          216 LSMLRNATWTLSNFCR  231 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~  231 (417)
                      +.++..++..+..+..
T Consensus       174 ~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          174 KQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            7788887777776664

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=81.95  E-value=1.3  Score=33.47  Aligned_cols=72  Identities=14%  Similarity=0.055  Sum_probs=47.9

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~  145 (417)
                      +.+..+.+.|.+.++..+..|+..+..++.....+...++....++..|+.+++..+ +.++..++..+...+
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHH
Confidence            456667777777788888888877777765543333334555566777777776555 778777777666554

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=81.75  E-value=2.3  Score=32.54  Aligned_cols=74  Identities=8%  Similarity=-0.045  Sum_probs=56.7

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~  146 (417)
                      +++..+.+.|++.++.++..|+..|-.++.....+...++....++..|+.+++..     .++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45678888888999999999999998888765444556677788899999988741     237888888877776654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=80.49  E-value=2.8  Score=32.06  Aligned_cols=74  Identities=7%  Similarity=-0.032  Sum_probs=55.9

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~  146 (417)
                      +.+..+.+.|++.++.++..|+..|-.++.....+...++....++..|+.+++..     .++.++..++..+...+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            45677888888899999999999888887765444455677777888899988742     237888888887777664

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=80.19  E-value=24  Score=31.63  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=76.6

Q ss_pred             CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh--------
Q 014864          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT--------  356 (417)
Q Consensus       285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~--------  356 (417)
                      .+++.++.+-.+.+..++...+..|...+....+...     .+++.|..++.+. ++.|.+.+..+.+++-        
T Consensus        63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~~i~  136 (386)
T 3o2t_A           63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQWMV  136 (386)
T ss_dssp             GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999888999999999999988865544432     4577888889877 8899988888777763        


Q ss_pred             cC--CHHHHHHHHH--CCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          357 AG--NREQIQAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       357 ~~--~~~~~~~l~~--~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                      .+  .++.....++  ..+-..++..+.+++..+|..|+..+..++
T Consensus       137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            11  1111111221  123445666777888999999998888766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-91
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-60
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-39
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	9e-20
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-09
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  283 bits (724), Expect = 1e-91
 Identities = 219/409 (53%), Positives = 271/409 (66%), Gaps = 14/409 (3%)

Query: 12  RRNKYKVA--VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQN-------QQPLAND 62
           RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             +   +  
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 63  VNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV 122
            +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
           EF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WA
Sbjct: 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 185

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV 241
           LGN+AGDS   RD VL    + P+L  L    K S++R ATWTLSN CRGK PQP +  V
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
             PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN E
Sbjct: 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTE 363

Query: 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKY 408
           QIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I+Y
Sbjct: 364 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 412

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 43/177 (24%)

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
           + Q+   LP +   ++S+D +    A       LS      I  VI+AGV PRL EF+  
Sbjct: 71  YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             P                                            ++ EA W ++NI 
Sbjct: 131 NQPE------------------------------------------MLQLEAAWALTNIA 148

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFC 413
           +G   Q + V++A+ +   + LL     ++K++A WA+ N     T  +        
Sbjct: 149 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 205

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  200 bits (508), Expect = 2e-60
 Identities = 178/339 (52%), Positives = 228/339 (67%), Gaps = 6/339 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           FE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 195 DLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALA 249
           DLV+  G + PLLA L            LRN TWTLSN CR K   PP D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
           GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+  
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408
            ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI Y
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 352

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 8/263 (3%)

Query: 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ-LNGQPKL 216
           + +V   VK + S + + + QA  A   +     +     + + GL+P     L      
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
            +   + W L+N   G  +     V   A+PA   L+ S    +   A WAL  ++   +
Sbjct: 72  PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 276 DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330
                VI+ G    L   L        +   L     T+ N+    +         Q LP
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191

Query: 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390
            L+ LL  +    +  ++CW +S +T G  E+I+ V++  ++  LV LL   E  I   A
Sbjct: 192 TLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250

Query: 391 AWAISNATSGGTHEQIKYEHTFC 413
             AI N  +G   +  K      
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGA 273

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 2e-39
 Identities = 44/319 (13%), Positives = 90/319 (28%), Gaps = 29/319 (9%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
                        +I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--- 339
            +G+   L  ++ +   +           +    ++  +   E       L   + N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 340 ----------YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389
                         +              N +    +  ++ I   + L+  ++ D   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 390 AAWAISNATSGGTHEQIKY 408
           A        +         
Sbjct: 303 ACAGALQNLTASKGLMSSG 321

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 2e-16
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 28/308 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 175 VR------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ--------LNGQPKLSMLR 220
            R      E  +  L N++            Q       A          + +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQ 279
           N    L           +   S A+    +L+  +  +        AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 280 A-----VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKS-----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-IKK 388
           LL+ +   +     I   AC+TV N+ A   +  +    ++++  ++ L  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 389 EAAWAISN 396
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 5e-13
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 16/237 (6%)

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
            + +   +      +            + SD +              +P+    +     
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSND 256
           +   L  +    K + L      L N    K                 LP +A L+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVG 310
            +V+      LS +S   +  +  V+   VFP +   L         S  +L  A  TV 
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367
           N++       +       L  ++NL   +      + A   +S++   ++E +Q V+
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM-WSSKE-LQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 22/227 (9%), Positives = 54/227 (23%), Gaps = 15/227 (6%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
              A  AL  L   +                   L     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 TQCVIEYQALPCLLNLLSGNYK--------------KSIKKEACWTVSNITAGNREQIQA 365
            + +I          ++                     +   A   + N+++ +  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412
              + +I  L+A ++N     + +     +                 
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 14/186 (7%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---- 114
              +    G     + +   +  +  +      E      + L+  +      + +    
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 115 -SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----- 168
               +P+    L +     +    A  L+N++         V+ +   P   +LL     
Sbjct: 329 KEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTG 385

Query: 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
             S S+D+   A + + N+    P+      S   L  ++              A   LS
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 228 NFCRGK 233
           +    K
Sbjct: 446 DMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.2 bits (232), Expect = 2e-21
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 1/245 (0%)

Query: 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278
            R    TL N    +        S  +PAL  ++ S  D VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
            AV  AG   ++   L   +   L      +  +  G+      ++       L+N++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398
              + +       +  + +       A++EA  +  L   L +    + +   W + N +
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 399 SGGTH 403
              T 
Sbjct: 256 DAATK 260

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (199), Expect = 2e-17
 Identities = 66/341 (19%), Positives = 116/341 (34%), Gaps = 10/341 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQL 133
           +P +   +   D  V  +      +L   E       ++RS  +V   V  +   +  + 
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
               A  L N++    E    +   G +P  VK+L SP D V   A+  L N+       
Sbjct: 77  ARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  V   GGL  ++A LN      +              +        S    AL +++ 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
                        + L   L  L G+   ++   A   +SN+T  N +    V +   I 
Sbjct: 256 D----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 374 PLVALLENAEFDIK--KEAAWAISNATSGGTHEQIKYEHTF 412
            LV  +  A       + A  A+ + TS     ++      
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (159), Expect = 2e-12
 Identities = 38/273 (13%), Positives = 88/273 (32%), Gaps = 28/273 (10%)

Query: 129 DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR--EQAVWALGNI 186
           D   +   AA  L+N+     ++  +V   G +   V+ +    D     E A+ AL ++
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

Query: 187 AGDS---PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243
                     ++ V    GL  ++  L+      +++     + N           +   
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           A+P L  L+     +         +        +++ ++E                    
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG------------------- 438

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
                +  +   D      +     +P  + LL  +  ++I++ A   +  + A ++E  
Sbjct: 439 -CTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCEL-AQDKEAA 494

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
           +A+       PL  LL +    +   AA  +  
Sbjct: 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 3e-12
 Identities = 31/199 (15%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               +P  V+ L    +  L       + N+A   + H  +  + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQ 411

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           D + +                               + G     ++   T  L    R  
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                 +    +P    L++S  + +   A   L  L+    +  +A+   G    L E 
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTEL 509

Query: 294 LMHPSPSVLIPALRTVGNI 312
           L   +  V   A   +  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 44/172 (25%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L+ +      +   R+ +     +F+      ++      AL  +A     +  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +P+FV+LLYSP ++++  A   L  +A D     + + ++G                  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG------------------ 501

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
                                   A   L  L+HS ++ V T A   L  +S
Sbjct: 502 ------------------------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 3e-10
 Identities = 62/357 (17%), Positives = 109/357 (30%), Gaps = 27/357 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L  MVA +   +       T   + L +         ++ SG     V  +    Y +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
                 +  + S  S +   +++ G +      L  PS  + +  +W L N++  + +  
Sbjct: 204 -WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            +    G LV LL   +           +    N  + K          AL         
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 255 NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
            +D  E    A   L+           AV      P + + L  PS   LI A   +   
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLS---------------------GNYKKSIKKEACWT 351
           +         + E  A+P L+ LL                      G   + I +     
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN-ATSGGTHEQIK 407
           +  + A +      +   N I   V LL +   +I++ AA  +   A      E I+
Sbjct: 443 LHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 498

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 9e-20
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 7/259 (2%)

Query: 103 IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222
           +  + L + +  +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + +S   R +               L   +     ++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-----YQALPCLLNLL 336
              G+  +L   +           L  + ++VT      +   E      + L     LL
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 337 SGNYKKSIKKEACWTVSNI 355
             + +   + E C  +   
Sbjct: 243 QQHEEYQEELEFCEKLLQT 261

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 18/287 (6%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPAL 248
            + ++  +    +V  L       K  +   ++  L       P         +     +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 249 AHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
              + S      D  V  +A   ++ +       +     + +   L   L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
             +  +G++V          ++   +  LL+ LS N   S  +     ++ I+     +I
Sbjct: 191 RTIIALGHLVMS--CGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH 410
              +E  II  +V      + ++++    A  +       E   +  
Sbjct: 247 GEYLE-KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS 292

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 109  IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
              +   + V     +         ++  A  +L  +      H  +        + ++  
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAF 862

Query: 169  YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLS 227
             SPS++V+  A +ALG+I+  +            L  +L ++  QPK    L ++   + 
Sbjct: 863  SSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 228  NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
            +        P+  V      L       ++         L         K+  +    + 
Sbjct: 915  SSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLL 964

Query: 288  PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347
            PRL  +L+  S       +  V   ++        +++   +   L  L      ++++ 
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP-DLNVRRV 1022

Query: 348  ACWTVSNI 355
            A  T ++ 
Sbjct: 1023 ALVTFNSA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 125  LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
                     +   A  L  +     E          +P     L S S   R   V A+ 
Sbjct: 936  HCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVK 987

Query: 185  NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
                D P+  D +L     +    +    P L++ R A  T ++    KP    D +   
Sbjct: 988  FTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

Query: 245  LPALAHLIHSNDDEVLT 261
            LP L +      + +  
Sbjct: 1046 LPHLYNETKVRKELIRE 1062

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 8e-10
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 29/287 (10%)

Query: 75  LPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           L  ++ G+   +    V+   T      L   ++   +E  R  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           ++  A   L  I S   ++ +  +      I ++ + S  D+V  Q +    N+  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 193 C---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-------------- 235
                     QG      ++   +  L  L                              
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 236 ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
                    D V   LP +   I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
           L E +  PS  V   A  TVG I    ++  +  I    L  LL  L
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 10/184 (5%)

Query: 213 QPKLSMLRNATWTLSNFCR--GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270
            P    +  A   LS      G         S  L  +   +     EV   +   L  L
Sbjct: 633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 692

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV--TGDDMQTQCVIEYQA 328
           +      ++  I     P L   L     SV   A   +G I    G +MQ         
Sbjct: 693 TKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP---MV 748

Query: 329 LPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
           L  L+ +++  N  K++ +    T+  +     +++  +++   I P    L N   + +
Sbjct: 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-QFIRPWCTSLRNIRDNEE 807

Query: 388 KEAA 391
           K++A
Sbjct: 808 KDSA 811

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 40/328 (12%), Positives = 91/328 (27%), Gaps = 22/328 (6%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA--VPIFVKLL 168
            V R  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
                 VR    W L   A            +  +  LL ++    K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVF 287
                       ++  L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL------------- 332
           P L +    +      L P L  + ++ T          E     C+             
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624

Query: 333 --LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKE 389
                      K     A   +S +  G    I+ ++  +NI+  +   +++   ++++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 390 AAWAISNATSGGTHEQIKYEHTFCTIFI 417
           +   + + T             F  I  
Sbjct: 685 SFALLGDLTKACFQHVKPCIADFMPILG 712

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 49/312 (15%), Positives = 93/312 (29%), Gaps = 19/312 (6%)

Query: 84  SNDSGVQYECTTQFRKLLS---IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA 140
           S D   +       +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
           +T IAS              +P    LL S   +  E A  AL  I  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 201 GG---LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
                ++P   Q        +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EV  + C AL  L +   D++   +   +   + +       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
                 +  + LP L+ +L    K S                    +  I          
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 378 LLENAEFDIKKE 389
             ++ E  I++E
Sbjct: 344 AQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 92  ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151
                    L+      IE+++    +   +   +++  P+++  +   L ++     +H
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699

Query: 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA---GD--SPRCRDLVLSQGGLVPL 206
            K  I    +PI    L      V   A WA+G I+   G    P    ++     LV +
Sbjct: 700 VKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEI 755

Query: 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQ---PPFDQVSPALPALAHLIHSNDDEVLTDA 263
           +         ++L N   T+       PQ   P   Q          L +  D+E    A
Sbjct: 756 IN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDNEEKDSA 811

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 25/282 (8%), Positives = 61/282 (21%), Gaps = 39/282 (13%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
           ++   L +  +    +E+ R          LL +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                AV + ++     +   R+   + LG I                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACW-------AL 267
              +   A  + +  C+  P      V  +         +                   L
Sbjct: 100 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL 159

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
                   +       A                 +         +     +      + +
Sbjct: 160 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 219

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
            L  L + L    K ++  +       +  G++  +  +   
Sbjct: 220 VLSVLCDELK---KNTVYDDIIEAAGEL--GDKTLLPVLDTM 256

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 125 LLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            L +    ++  A   L  +    G       +I     P  + +   P+   R   ++ 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHATII-----PKVLAMSGDPNYLHRMTTLFC 503

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           +  ++    +  D+      ++P + ++ G P  ++  N   +L                
Sbjct: 504 INVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE- 558

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLS 271
              P L  L    D +V   A  AL+ LS
Sbjct: 559 -VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           P  V+L       VR   +  +  +AG              L  L          ++   
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREA 460

Query: 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
           AT  L        +         +P +  +    +        + ++ LS+     I   
Sbjct: 461 ATSNLKKLVEKFGKEWAHAT--IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--- 515

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
               + P +      P  +V     +++  I     +     ++ +  P L  L  
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQ 568

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   L  +     +      +   ++P +  ++G P         + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
            +    LP +  +       V  +   +L  +    ++     +++ V P L +      
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 299 PSVLIPALRTVGNI 312
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           +++    ++P  +  +  +    ++F  A +L  I       T   +     PI  KL  
Sbjct: 513 QDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQ 568

Query: 170 SPSDDVREQAVWALGNIA 187
               DV+  A  AL  ++
Sbjct: 569 DQDVDVKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.54
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.45
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.45
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.43
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.39
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.31
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.3
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.29
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.99
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.96
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.93
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.91
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.89
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.78
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.69
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.54
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.42
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.41
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.03
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.82
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.68
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.47
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.24
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.76
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.51
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	92.59
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	84.87
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.5
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	82.79
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	82.5
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	80.2
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	80.07

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-54  Score=411.67  Aligned_cols=406  Identities=54%  Similarity=0.807  Sum_probs=352.8

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCC-ccC------CCCCchhhhccCHHHH
Q 014864            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPL-AND------VNAPGTAKKLENLPVM   78 (417)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~-~~~------~~~~~~~~~~~~l~~l   78 (417)
                      .+++|++.||+ | .+++|+||||+++.++|||+||++.++|||+.....+... +..      ..........+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            57899999999 6 4999999999999999999999999999997543221110 000      0111112223578999


Q ss_pred             HhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC
Q 014864           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (417)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~  158 (417)
                      ++.+.++|...+..|+..++++++.+.+++++.+++.|++|.|+.+++.+.++.++..|+|+|++++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999887788899999999999999999976658899999999999999989999999999


Q ss_pred             CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCC
Q 014864          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (417)
Q Consensus       159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~  237 (417)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.++..+.+.|++++++.++ .+.+..+++.++|++++++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6777889999999999999876 5556


Q ss_pred             hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (417)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  317 (417)
                      .....+++|.+..++.++|++++..++|++.+++.+.++....+++.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (417)
Q Consensus       318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl  397 (417)
                      .....+++.|+++.+..+++++ ++.+++.++|+|+|++.++++....+++.|+++.++.++.+++++++.+|+|+|+|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            9999899999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHhcCcc
Q 014864          398 TSGG--THEQIKYEHTFCTI  415 (417)
Q Consensus       398 ~~~~--~~~~~~~l~~~g~i  415 (417)
                      +..+  ..+++.++++.|++
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l  419 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCI  419 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCH
T ss_pred             HhcccccHHHHHHHHHCCcH
Confidence            9865  35778899988865

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-39  Score=303.45  Aligned_cols=342  Identities=52%  Similarity=0.843  Sum_probs=316.0

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  152 (417)
                      ++++.+++.+.+++++.+..|+..++++++...++.++.+++.|++|.|+++|++.++++++..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            67999999999999999999999999998877677788999999999999999876558899999999999999888999


Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCc----hhHHHHHHHHHhh
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK----LSMLRNATWTLSN  228 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~a~~~l~~  228 (417)
                      ..+++.|+++.|+.+|.+++.++++.|+++|+|++.+++.++..+.+.|+++.++.++.....    ....+.++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999954332    3567889999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864          229 FCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (417)
Q Consensus       229 l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~  307 (417)
                      ++... +........+++|.+..++.+++++++..++|++++++..+++....+...|+++.++.++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99876 34445566889999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      +|++++.+++.....+++.|+++.+..++.++ ++.++..|+|+|+|++.++++....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999999998888899999999999999998 99999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          388 KEAAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       388 ~~a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      ..|+|+|+|++..++.+++.++++.|++
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i  359 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGII  359 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcH
Confidence            9999999999999999999999998875

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-33  Score=266.89  Aligned_cols=324  Identities=25%  Similarity=0.345  Sum_probs=291.2

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.+|.++..+++ .++.++..|+++|.++.+.. +.....+.+.|+++.++.+|.+++ .+++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            679999999986 56789999999999998764 556677889999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.|++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976554555556678899999999 78889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864          232 GKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (417)
Q Consensus       232 ~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~  310 (417)
                      ..+.. ......++++.++.++.++++.+...++.++++++.+.+.....+.+.|+++.+..++.++++.++..++++|+
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            65332 22333688999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIK  387 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  387 (417)
                      |++.+++.....+++.|+++.++.++.+. +..++.+|+|+|+|++.   ..++.+..+++.|+++.|+++|...+.++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999999999899999999999999998 99999999999999986   245678889999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 014864          388 KEAAWAISNATSG  400 (417)
Q Consensus       388 ~~a~~~L~nl~~~  400 (417)
                      ..++.+|.++...
T Consensus       435 ~~~L~~l~~ll~~  447 (503)
T d1wa5b_         435 EVTLDALENILKM  447 (503)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-32  Score=256.37  Aligned_cols=339  Identities=26%  Similarity=0.395  Sum_probs=294.0

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.+|.|++.|++ +++.+|..|+++|.++++.. ++....+++.|++|.|+.+|.+++ ++++..|+++|++++.++++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence            689999999975 56789999999999997654 556778999999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChhHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864          152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l  226 (417)
                      +..+.+.|+++.++.++..++     ......++|++.+++.............++++.+..++ .+.+++++..++|++
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence            999999999999999997643     45667889999999987665555555667788888888 788899999999999


Q ss_pred             hhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHH
Q 014864          227 SNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (417)
Q Consensus       227 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a  305 (417)
                      .+++...+... .....+++|.++.++.+++++++..+++++.+++.+++.....+++.|+++.++.++.++++.++..|
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            99998753222 22346899999999999999999999999999999888888889999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF  384 (417)
Q Consensus       306 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~  384 (417)
                      +++|++++.........+.+.|+++.++.++.+. ++.++..|+|+++|++. ++++.+..+.+.|+++.|+++++.+++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            9999999999998888899999999999999998 99999999999999987 577888889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCC----CCHHHH-HHHHhcCcc
Q 014864          385 DIKKEAAWAISNATSG----GTHEQI-KYEHTFCTI  415 (417)
Q Consensus       385 ~v~~~a~~~L~nl~~~----~~~~~~-~~l~~~g~i  415 (417)
                      +++..++++|.++...    +..+.. ..+.+.||+
T Consensus       372 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         372 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence            9999999999998752    233433 444455553

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-29  Score=240.64  Aligned_cols=320  Identities=22%  Similarity=0.220  Sum_probs=276.1

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH-HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.+|.|++.|+++|..++..|+..+.++...  +.....++ ..|+++.|+.+|.+.++++++..|+++|.+++.+ ++.
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~   93 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG   93 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            5789999999999999999999999999643  34444444 4578999999998765589999999999999874 788


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+++.|+++.|+.+|.++++.++..|+++|+|++.+.+..+..+.+.|+++.|+.++ +++++.++..+++++.+++.
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999998888999999999999999999 77889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864          232 GKPQP-PFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (417)
Q Consensus       232 ~~~~~-~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L  309 (417)
                      ..+.. ......++++.++.++.+. ++.++..+++++.+++...+ ....+++.|+++.|+.++.+++..++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            75322 3334478899999999654 57889999999999987554 456789999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc--cCCHHHH
Q 014864          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE--NAEFDIK  387 (417)
Q Consensus       310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~--~~~~~v~  387 (417)
                      .++.......   ....|+++.|+.++.++ ++.++..|+++|+|++.++++....+.+.++++.|+..+.  .+.++++
T Consensus       252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~  327 (529)
T d1jdha_         252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  327 (529)
T ss_dssp             HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHH
Confidence            9998554422   12247789999999998 9999999999999999988988888899999999999884  4567899


Q ss_pred             HHHHHHHHHhhCCC
Q 014864          388 KEAAWAISNATSGG  401 (417)
Q Consensus       388 ~~a~~~L~nl~~~~  401 (417)
                      ..|+++|.|++...
T Consensus       328 ~~a~~aL~~l~~~~  341 (529)
T d1jdha_         328 EPAICALRHLTSRH  341 (529)
T ss_dssp             HHHHHHHHHHTSSS
T ss_pred             HHHHHHhhcccchh
Confidence            99999999999765

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=235.57  Aligned_cols=335  Identities=16%  Similarity=0.157  Sum_probs=285.7

Q ss_pred             cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (417)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  151 (417)
                      +.++.++..|.+ ++++.+..|+.+|.++...  ++....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            357888998865 7789999999999998542  566778999999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (417)
Q Consensus       152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~  231 (417)
                      +..+.+.|+++.|+.+|++++++++..++++|.+++..++..+..+...|++++++.++..+++..++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999998888899999999999999999777788899999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (417)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~  311 (417)
                      ...........++++.|..++.+++..+...+++++.+++......   ....|+++.|+.++.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7554444555789999999999999999999999999998654321   1224678999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCH---HHHHHHHHCCCHHHHHHHhccC-CHHH
Q 014864          312 IVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNR---EQIQAVIEANIIGPLVALLENA-EFDI  386 (417)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~~l~~~-~~~v  386 (417)
                      ++.+++.....+.+.++++.++..+.. ...+.++..++++|.|++...+   .....+...+.++.|+.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            999999888888899999999998853 2267899999999999997432   2344556789999999999865 4678


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          387 KKEAAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      +..+++++.|++...  +....+.+.|++
T Consensus       373 ~~~~~~~l~~l~~~~--~~~~~l~~~g~i  399 (529)
T d1jdha_         373 IKATVGLIRNLALCP--ANHAPLREQGAI  399 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHH
T ss_pred             HHHHHHHHhhcchhh--hhhhhhhhcccH
Confidence            899999999998853  445666666654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.7e-25  Score=204.15  Aligned_cols=322  Identities=18%  Similarity=0.202  Sum_probs=248.0

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      .+|.+++.|+++++++|..|+.+|.+++..+ ++....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999997654 678888999999999999999988 99999999999999988899999


Q ss_pred             HHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh---------------cCCCchh
Q 014864          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---------------NGQPKLS  217 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll---------------~~~~~~~  217 (417)
                      .+.+.|+++.|+.++.+ .++.++..++++|.+++..... +......| ++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 7889999999999999987653 33333332 33333322               1233455


Q ss_pred             HHHHHHHHHhhhhcCCCCCCh-----------------------------------------------------------
Q 014864          218 MLRNATWTLSNFCRGKPQPPF-----------------------------------------------------------  238 (417)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~-----------------------------------------------------------  238 (417)
                      ++..+++++.+++........                                                           
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            666666665555432110000                                                           


Q ss_pred             ----------------------------------------hhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChH-
Q 014864          239 ----------------------------------------DQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTND-  276 (417)
Q Consensus       239 ----------------------------------------~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~-  276 (417)
                                                              ....++++.++.++.. .++.+...+++++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                    0011344555555533 3567778888889988765432 


Q ss_pred             ----HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-----chhHHHH
Q 014864          277 ----KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKE  347 (417)
Q Consensus       277 ----~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----~~~v~~~  347 (417)
                          ....+.+.|+++.|+.++.++++.++..+++++++++..... .. .+..++++.++.+|....     +++++..
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~-~~-~i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH-HH-HHHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence                223345678999999999999999999999999999876543 33 345578999999986431     4579999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCC
Q 014864          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~  401 (417)
                      |+++|.|++.++++..+.+.+.|+++.|+.++.+. ++.+++.|+.+|+|++...
T Consensus       397 a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            99999999998898999999999999999999764 6899999999999997653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-24  Score=199.20  Aligned_cols=294  Identities=18%  Similarity=0.226  Sum_probs=226.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (417)
Q Consensus       116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (417)
                      +.+|.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+||.|+++|.+++++++..|+++|+||+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999999899999999999999999999999999999999999999999888999


Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----------------cCCChHH
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----------------HSNDDEV  259 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----------------~~~~~~v  259 (417)
                      .+.+.|+++.++.++....++.++..+++++.+++...... ......+++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999977788999999999999999875332 233334444444332                3346788


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-------------------------------------------
Q 014864          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-------------------------------------------  296 (417)
Q Consensus       260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-------------------------------------------  296 (417)
                      +..+++++.+++...+.....+...|+++.++.++.+                                           
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            9999999998886655444333334445544443321                                           


Q ss_pred             --------------------------------------------------------CChhhHHHHHHHHHHhhcCChH--
Q 014864          297 --------------------------------------------------------PSPSVLIPALRTVGNIVTGDDM--  318 (417)
Q Consensus       297 --------------------------------------------------------~~~~v~~~a~~~L~~l~~~~~~--  318 (417)
                                                                              .++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                                                    1122345566666776654432  


Q ss_pred             ---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC------CHHHHHH
Q 014864          319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EFDIKKE  389 (417)
Q Consensus       319 ---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~------~~~v~~~  389 (417)
                         ....+.+.++++.++.++.++ ++.++..++++++|++.. ++....+ ..++++.|+.+|...      +.+++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               223344679999999999998 999999999999999875 3333333 346899999998643      3579999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864          390 AAWAISNATSGGTHEQIKYEHTFCTI  415 (417)
Q Consensus       390 a~~~L~nl~~~~~~~~~~~l~~~g~i  415 (417)
                      |+.+|.|++.. +++..+.+.+.||+
T Consensus       397 a~~~L~~l~~~-~~~~~~~l~~~g~i  421 (457)
T d1xm9a1         397 ACYTVRNLMAS-QPQLAKQYFSSSML  421 (457)
T ss_dssp             HHHHHHHHHTT-CTHHHHHHCCHHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHCCCH
Confidence            99999999976 55667777777664

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-20  Score=162.69  Aligned_cols=194  Identities=14%  Similarity=0.139  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHH
Q 014864          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (417)
Q Consensus       131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l  209 (417)
                      .+.+..|+.+|.+++.+ .++...+...|+++.++. ++++++++++..|+++|++++.+++.++..+.+.|+++.|+++
T Consensus        31 ~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            67899999999999974 777888899999998886 7888999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHhhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864          210 LNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (417)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  288 (417)
                      +..+.++.++..+++++++++...+... .....++++.|++++.++++.++..++++|.+++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9777889999999999999998874433 334588999999999999999999999999999988888888899999999


Q ss_pred             HHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014864          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (417)
Q Consensus       289 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  325 (417)
                      .|+.++.++++.++..|+++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999988877665543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-19  Score=157.15  Aligned_cols=197  Identities=12%  Similarity=0.113  Sum_probs=174.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHH
Q 014864          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPAL  248 (417)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L  248 (417)
                      ..+.+.+..|+.+|.+++.+.+ ++..+...|++++++..+..+++++++..++++|++++.+.+.... ....+++|.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3467889999999999996544 6677889999999998665889999999999999999987654333 3347899999


Q ss_pred             HHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 014864          249 AHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (417)
Q Consensus       249 ~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  327 (417)
                      +.++.+ .++.++..+++++++++.+.+.....+...|+++.|+.++.+++..++..++++|++++.+++.....+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999964 5788999999999999999988888899999999999999999999999999999999999998888899999


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE  368 (417)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (417)
                      +++.|+.++.++ ++.++..|+++|++++..++.....+..
T Consensus       187 ~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999998 9999999999999999988888776664

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.2e-14  Score=135.27  Aligned_cols=304  Identities=12%  Similarity=0.087  Sum_probs=223.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      ++.+...+.++++.++..|+..+..++..-.........-..++|.+...+++.+ +.++..++.++..++..-.  ...
T Consensus       283 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~--~~~  359 (588)
T d1b3ua_         283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG--KDN  359 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC--HHH
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc--hhH
Confidence            5666777778888888888888887765432333333444667889999998888 8999999888877764211  111


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~  234 (417)
                      .. ...+|.+..++.+++++++..++..++.+...-..  ..+ ....++.+...+ .+.++.++..++.++..++....
T Consensus       360 ~~-~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~-~~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~~  434 (588)
T d1b3ua_         360 TI-EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL-SQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             HH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH-HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhh-hhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHcC
Confidence            22 24689999999999999999999888877643211  111 122567777777 77889999999999998876421


Q ss_pred             CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (417)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~  314 (417)
                        .........+.+..++.++...++..++++++.++......   .....+++.+..++.++++..|..++.+++.+..
T Consensus       435 --~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~  509 (588)
T d1b3ua_         435 --VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             --GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             --hHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              11223456778888898889999999999999987532211   1223478999999999999999999999999875


Q ss_pred             CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHH
Q 014864          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (417)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~  393 (417)
                      ..+.   ......++|.+..++.++ .+.||..++++|..+... .+..    ....+.|.|..+++++|.+||..|..+
T Consensus       510 ~~~~---~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~L~~D~d~dVr~~A~~a  581 (588)
T d1b3ua_         510 VCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQEA  581 (588)
T ss_dssp             HHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HcCh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcCcHh----HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4332   134456899999999998 999999999999999863 3322    223456777788889999999999999


Q ss_pred             HHHhhC
Q 014864          394 ISNATS  399 (417)
Q Consensus       394 L~nl~~  399 (417)
                      +..|+.
T Consensus       582 l~~l~~  587 (588)
T d1b3ua_         582 LTVLSL  587 (588)
T ss_dssp             HHHTTC
T ss_pred             HHHHhc
Confidence            988764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-13  Score=132.04  Aligned_cols=308  Identities=11%  Similarity=0.098  Sum_probs=224.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-chhHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEHTK  153 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~~~  153 (417)
                      ++.+...+.+.++.++..++..+.++....    ........+++.+..++++.+ ++++..|++.+..++..- .....
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAV----GPEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHH----CHHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHhcccccHHHHHHHHHhHHHHHHHh----hhhhhhhhhhHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhh
Confidence            456666666777778888887777765322    112334567899999999888 899999999999887642 22222


Q ss_pred             HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      ...-..+++.+...+.+.++.++..++.++..++..-.   ........++.+...+ .+++++++..++..+..+...-
T Consensus       319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~---~~~~~~~l~p~l~~~l-~d~~~~v~~~~~~~l~~~~~~~  394 (588)
T d1b3ua_         319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc---hhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHhhc
Confidence            22233678889999999999999999988888763211   1112223678888888 7888999999988888777542


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (417)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~  313 (417)
                      .  ........+|.+..++.+.++.++..++.++..++..-..   ..+...+.+.+..++.++...+|..|+.+++.++
T Consensus       395 ~--~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~  469 (588)
T d1b3ua_         395 G--IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             C--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             c--hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence            1  1233466788899999999999999999999887642110   0111235677888888999999999999999997


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHH
Q 014864          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (417)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~  393 (417)
                      ......   .....+++.+..++.++ +..+|..++.+++.+....+.   ..+...++|.|+.+++++.+.||..++++
T Consensus       470 ~~~~~~---~~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~v~nVR~~a~~~  542 (588)
T d1b3ua_         470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKS  542 (588)
T ss_dssp             HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHhCcH---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            533221   12335788999999888 999999999999998764332   22344689999999999999999999999


Q ss_pred             HHHhhCCCCH
Q 014864          394 ISNATSGGTH  403 (417)
Q Consensus       394 L~nl~~~~~~  403 (417)
                      |..+....+.
T Consensus       543 l~~i~~~~~~  552 (588)
T d1b3ua_         543 LQKIGPILDN  552 (588)
T ss_dssp             HHHHGGGSCH
T ss_pred             HHHHHHHcCc
Confidence            9999876554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.3e-11  Score=104.89  Aligned_cols=253  Identities=15%  Similarity=0.100  Sum_probs=190.9

Q ss_pred             CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (417)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  153 (417)
                      ..+.|++.|.++++.++..|+..|..+-    +        ...++.|+.++++++ +.++..|+++|+.+.........
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~----~--------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~~~   86 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRG----G--------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDN   86 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC----C--------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhC----C--------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccccc
Confidence            4578999999999999999999998763    1        124899999999998 99999999999998764222111


Q ss_pred             HHHhCCChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          154 VVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       154 ~i~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                            .++.+. .+++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++..... 
T Consensus        87 ------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          87 ------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             ------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence                  123333 3567899999999999999998665533222     355666666 77788899989888876543 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (417)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l  312 (417)
                               ...++.+..++...+..+...+..++.........         ..+.++..+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     24567888888888999998888888887665543         234567778888999999999998876


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHH
Q 014864          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAA  391 (417)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~  391 (417)
                      ..           ...++.|+..+.++   .+|..++++|+.+..           .+.++.|..++.+ ++.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            42           24577888888754   689999999998842           2578888888875 4789999999


Q ss_pred             HHHH
Q 014864          392 WAIS  395 (417)
Q Consensus       392 ~~L~  395 (417)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8874

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.8e-13  Score=134.69  Aligned_cols=303  Identities=15%  Similarity=0.175  Sum_probs=188.5

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH
Q 014864           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (417)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  166 (417)
                      +..+..|..++..+....+.+....     +++.+.+.+.+++ ...|..|+.+|+.++.+..+.....+. .+++.|+.
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~  443 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQ  443 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHH
Confidence            3456666666666554332332222     3666777788877 799999999999999876544333332 46788999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCc-hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864          167 LLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (417)
Q Consensus       167 ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  245 (417)
                      .+.++++.++..++|+|+.++.... ...+. .-...++.++..+ .+.++.++..++++|.+++.............++
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il  521 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYIL  521 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999999999999999874211 11111 2234677888888 7778999999999999998654322222222333


Q ss_pred             HHHHHhhcCCChHHHH---------------------------------------------HHHHHHHHhcc----C---
Q 014864          246 PALAHLIHSNDDEVLT---------------------------------------------DACWALSYLSD----G---  273 (417)
Q Consensus       246 ~~L~~ll~~~~~~v~~---------------------------------------------~a~~~l~~l~~----~---  273 (417)
                      +.+...+...+.....                                             ..+.+++.++.    .   
T Consensus       522 ~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         522 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            3333322221111111                                             11111111100    0   


Q ss_pred             ---------------------------------ChHHH-------------------HHHHHcCChHHHHhhcCCCChhh
Q 014864          274 ---------------------------------TNDKI-------------------QAVIEAGVFPRLAEFLMHPSPSV  301 (417)
Q Consensus       274 ---------------------------------~~~~~-------------------~~~~~~~~~~~L~~~l~~~~~~v  301 (417)
                                                       ..+..                   ..+....+++.+...+.+.++.+
T Consensus       602 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~v  681 (888)
T d1qbkb_         602 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV  681 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHH
Confidence                                             00000                   00111123445556666777888


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (417)
Q Consensus       302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~  381 (417)
                      +..|+.++|.++..........+. .+++.+...++++ ...++..|+|++|.++...++.....+. .+++.|+.++++
T Consensus       682 r~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~  758 (888)
T d1qbkb_         682 RQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINR  758 (888)
T ss_dssp             HHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcC
Confidence            888888888888655543322222 3677788888877 8899999999999998643333333232 478889999986


Q ss_pred             CC--HHHHHHHHHHHHHhhCCC
Q 014864          382 AE--FDIKKEAAWAISNATSGG  401 (417)
Q Consensus       382 ~~--~~v~~~a~~~L~nl~~~~  401 (417)
                      ++  ..++.+++.+|+.++...
T Consensus       759 ~~~~~~v~~n~~~~lgrl~~~~  780 (888)
T d1qbkb_         759 PNTPKTLLENTAITIGRLGYVC  780 (888)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHHHHHC
Confidence            53  568999999999987753

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.9e-10  Score=97.79  Aligned_cols=230  Identities=14%  Similarity=0.108  Sum_probs=178.0

Q ss_pred             hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (417)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (417)
                      ....+.|+++|++++ +.++..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345778999999988 9999999999998753  1         4689999999999999999999999998654332 1


Q ss_pred             HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (417)
Q Consensus       195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  274 (417)
                      +.     .++.+...+..++++.++..++.+|..++...+    ......++.+...+.++++.++..++.+++....  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            22     244566666578899999999999999987532    2234567788888888899999888888876532  


Q ss_pred             hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (417)
Q Consensus       275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (417)
                               ...++.+..++...++.++..+..+++.+.......         .+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI---------RDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH---------HHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhcccccc---------chhhhhhhhhh-hhhhhhhhccccch
Confidence                     246778888899999999999998888887665532         34567777777 89999999999987


Q ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      +..           ...++.|++.+.+  +.+|..|+++|+.+...
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~~  247 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGDK  247 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCCG
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCCH
Confidence            632           2467888888875  45899999999998543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.6e-10  Score=120.28  Aligned_cols=316  Identities=13%  Similarity=0.132  Sum_probs=214.3

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      +..+++.+.+.|++.|+.|+..|.+.+..+. ...+.-....+++.|+.+|++++ +++|..|+.+|+.++..-++..  
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~--   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQ--   80 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcc-cccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhh--
Confidence            5788999999999999999999998876531 11111122346899999999888 9999999999999988644321  


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~  228 (417)
                       +. ..++.|+..+.+++...+..+..+|..+...-+.      .... .....++.+...+....+..++..++.++..
T Consensus        81 -~~-~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          81 -VE-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             -HH-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence             11 4678888888888888888888888776532211      1111 1112445556666566788899999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH-----HHHHHH--------------------
Q 014864          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-----IQAVIE--------------------  283 (417)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~--------------------  283 (417)
                      +....+.........+++.+...+.+++..++..++.+++.++......     ...+++                    
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            8876554444445678888999999999999999999999887543211     111111                    


Q ss_pred             -------------cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH----HHHHHc--------------------
Q 014864          284 -------------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT----QCVIEY--------------------  326 (417)
Q Consensus       284 -------------~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~--------------------  326 (417)
                                   ..+++.++..+.+.++.++..++.++..++...+...    ..++..                    
T Consensus       238 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~  317 (1207)
T d1u6gc_         238 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE  317 (1207)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------
T ss_pred             HHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence                         1345566666777788889888888888875543211    111100                    


Q ss_pred             ------------CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864          327 ------------QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (417)
Q Consensus       327 ------------~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L  394 (417)
                                  ...+.......+. .+.+|..++.+|..++...++.....++ .+++.|+..+.+.+..+|..+..++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~d~-s~~vR~~a~~~L~~l~~~~~~~l~~~~~-~~~~~L~~~l~d~~~~vr~~~~~~l  395 (1207)
T d1u6gc_         318 NAMDADGGDDDDQGSDDEYSDDDDM-SWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAY  395 (1207)
T ss_dssp             ------------------------C-TTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred             hhhhhhccchhhhhHHHHHhhhhhh-hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCCchHHHHHHHHHH
Confidence                        0000111112223 5789999999999998866655544443 6899999999999999999999998


Q ss_pred             HHhhC
Q 014864          395 SNATS  399 (417)
Q Consensus       395 ~nl~~  399 (417)
                      ..+..
T Consensus       396 ~~l~~  400 (1207)
T d1u6gc_         396 LSLLK  400 (1207)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87753

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-11  Score=125.22  Aligned_cols=318  Identities=16%  Similarity=0.172  Sum_probs=196.5

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc-hhHHH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-EHTKV  154 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~  154 (417)
                      +.+.+.+.++++..+..|+.++..++.+. .+.....+ ..+++.++..+++++ +.+|..|+|+|+.++.... .....
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44445667889999999999998876432 11111111 235788999999888 9999999999999876211 11222


Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chHHH----------------H---------HHhc----
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRD----------------L---------VLSQ----  200 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~----------------~---------~~~~----  200 (417)
                      .. ...++.++..+.++++.++..|+++|.+++...     +....                .         +.+.    
T Consensus       475 ~~-~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~  553 (888)
T d1qbkb_         475 YL-KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH  553 (888)
T ss_dssp             HT-TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             hh-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence            22 367888999999999999999999999987321     10000                0         0000    


Q ss_pred             ----C----CHHHHHHHhcC--CCc-------------------------------------------------------
Q 014864          201 ----G----GLVPLLAQLNG--QPK-------------------------------------------------------  215 (417)
Q Consensus       201 ----g----~i~~L~~ll~~--~~~-------------------------------------------------------  215 (417)
                          .    .++.+......  ..+                                                       
T Consensus       554 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  633 (888)
T d1qbkb_         554 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA  633 (888)
T ss_dssp             GCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred             ccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence                0    01111111100  001                                                       


Q ss_pred             --hhHHHHHHHHHhhhhcCCCCCChhh--hhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 014864          216 --LSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (417)
Q Consensus       216 --~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~  291 (417)
                        .++...++.++..+...-.......  ....++.+...+.+.+++++..+..+++.++...........+. +++.+.
T Consensus       634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~-~~~~l~  712 (888)
T d1qbkb_         634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILG  712 (888)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH-HHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHH
Confidence              0111111111111111100000000  12345666777778889999999999988876544333222222 677788


Q ss_pred             hhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 014864          292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (417)
Q Consensus       292 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (417)
                      ..+.++.+.++..|++++|.++..........+ ..+++.|+.+++++. +..++.+++.+||.++..+|+.....+. .
T Consensus       713 ~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-~  790 (888)
T d1qbkb_         713 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-Q  790 (888)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-G
T ss_pred             HHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-H
Confidence            888888889999999999999865543322211 256788999998752 3468999999999999877876543333 4


Q ss_pred             CHHHHHHHhcc-CCHHHHHHHHHHHHHhhCC
Q 014864          371 IIGPLVALLEN-AEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       371 ~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~  400 (417)
                      +++.++..|.. .+.+-+..|...++.+...
T Consensus       791 ~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         791 FIRPWCTSLRNIRDNEEKDSAFRGICTMISV  821 (888)
T ss_dssp             THHHHHHHHTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence            77888888865 4556688888888888764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-10  Score=107.15  Aligned_cols=277  Identities=14%  Similarity=0.100  Sum_probs=180.4

Q ss_pred             CCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCch
Q 014864          116 GVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPR  192 (417)
Q Consensus       116 g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~  192 (417)
                      ++++.+++.+.++. +...+..++.++..++.........-.....++.++..+.+  .+..++..++.+++++......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            45888888876543 35677788888888875322221111112456777777765  5688999999999999865432


Q ss_pred             HHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc-hHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864          193 CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYL  270 (417)
Q Consensus       193 ~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~v~~~a~~~l~~l  270 (417)
                      ... ........+.+...+ .+++++++..++.++..++...+..-...+.. ..+.+...+.+.+++++..++..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            211 111112344455555 77899999999999999987654332222323 344556667778888988888888777


Q ss_pred             ccCChHHH---------------------HHHHHcCChHHHHhhcCC-------CChhhHHHHHHHHHHhhcCChHHHHH
Q 014864          271 SDGTNDKI---------------------QAVIEAGVFPRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQC  322 (417)
Q Consensus       271 ~~~~~~~~---------------------~~~~~~~~~~~L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~  322 (417)
                      +.......                     .... ..+++.+...+.+       .++.++..+..++..++.......- 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-  363 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-  363 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHH-HHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhh-
Confidence            53221110                     0011 1233444444432       2346788888888888754433221 


Q ss_pred             HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                         ..+++.+...++++ ++.+|..|+.+|+.++.+. ++.....+ ..+++.++..+.++++.||..|+|+|+.++..
T Consensus       364 ---~~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         364 ---PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             ---HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence               13567788888888 9999999999999998753 22222222 36889999999999999999999999998754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.2e-10  Score=105.81  Aligned_cols=296  Identities=18%  Similarity=0.201  Sum_probs=184.6

Q ss_pred             CHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCch
Q 014864           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      .++.+++.+.+  .++..+..++..+..+.... .+.........+++.++..+.+.+ ...++..|+.++..+......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            45677777765  44566777778877765432 111111112334778888887643 378999999999999875433


Q ss_pred             hHH-HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~-~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ... ........+.+..++.+++++++..++.+|..++...+..-...+. ..+..++.....+.+..++..++.++..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            221 1222235677778888899999999999999998654432111111 13334433333677788888888888877


Q ss_pred             hcCC----------------C-CCCh----hhhhchHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          230 CRGK----------------P-QPPF----DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       230 ~~~~----------------~-~~~~----~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      +...                + ....    ......+|.+...+..       ++..++..+..++..++....+.   +
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~  362 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  362 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---H
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---h
Confidence            6321                0 0000    1123344555555432       12357777888888776533221   1


Q ss_pred             HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (417)
Q Consensus       282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (417)
                      .. .+++.+...+.++++.+|..|+.+|+.++.+.........-..+++.++..++++ ++.||..|+|+|+.++...++
T Consensus       363 ~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         363 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGGG
T ss_pred             hh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc
Confidence            11 2567788888999999999999999999975432211112346789999999998 999999999999999753221


Q ss_pred             HHHHHHHCCCHHHHHHHh
Q 014864          362 QIQAVIEANIIGPLVALL  379 (417)
Q Consensus       362 ~~~~l~~~~~i~~L~~~l  379 (417)
                      .   ......++.++..|
T Consensus       441 ~---~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         441 A---AINDVYLAPLLQCL  455 (458)
T ss_dssp             G---CCSTTTHHHHHHHH
T ss_pred             c---cchhhHHHHHHHHH
Confidence            1   11233466666554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.6e-09  Score=108.41  Aligned_cols=276  Identities=12%  Similarity=0.126  Sum_probs=183.9

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (417)
Q Consensus       117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (417)
                      +++.+...+....+..++..++.+|..+....+....... ..+++.|+..+.+++..++..|+.+|+.++...+..   
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---  206 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---  206 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---
Confidence            4555666666555588999999999988763221111111 135677778888899999999999999998654321   


Q ss_pred             HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (417)
Q Consensus       197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  276 (417)
                       .-...++.++..+..+.+...++.++.++..+++..+.........++|.+...+.+++++++..++.++..++...+.
T Consensus       207 -~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         207 -VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence             1123467777777566666677778888888888655443445578899999999999999999998888887654321


Q ss_pred             HHHHHHHcCChHHHHhh-------------------------------------cCCCChhhHHHHHHHHHHhhcCChHH
Q 014864          277 KIQAVIEAGVFPRLAEF-------------------------------------LMHPSPSVLIPALRTVGNIVTGDDMQ  319 (417)
Q Consensus       277 ~~~~~~~~~~~~~L~~~-------------------------------------l~~~~~~v~~~a~~~L~~l~~~~~~~  319 (417)
                      ....... .+++.+...                                     ..+..+.++..++.+|+.+....++.
T Consensus       286 ~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~  364 (1207)
T d1u6gc_         286 EVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM  364 (1207)
T ss_dssp             CCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             hhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            1110000 011111111                                     12335688999999999998776655


Q ss_pred             HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC------------------CHHHHHHHHHCCCHHHHHHHhcc
Q 014864          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG------------------NREQIQAVIEANIIGPLVALLEN  381 (417)
Q Consensus       320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~------------------~~~~~~~l~~~~~i~~L~~~l~~  381 (417)
                      ... .-..+++.++..+.+. ++.+|..+..+++.+...                  .+...-.-.-..+++.+...+.+
T Consensus       365 l~~-~~~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~  442 (1207)
T d1u6gc_         365 LPE-FYKTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE  442 (1207)
T ss_dssp             HHH-HHTTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             HHH-HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcC
Confidence            443 3346889999999888 899999999988887631                  01100000113466777888888


Q ss_pred             CCHHHHHHHHHHHHHhhCC
Q 014864          382 AEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       382 ~~~~v~~~a~~~L~nl~~~  400 (417)
                      .++.++..+..++..++..
T Consensus       443 ~~~~~r~~~~~~l~~l~~~  461 (1207)
T d1u6gc_         443 KSVKTRQCCFNMLTELVNV  461 (1207)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHH
Confidence            8999999999999887653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2.8e-08  Score=98.85  Aligned_cols=313  Identities=13%  Similarity=0.088  Sum_probs=199.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCC-CcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      ..+++.+.++++.++..++.++..++..+-+ ..+..     +++.|++.+.+++....+..|+.+|..++.........
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpe-----li~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHH-----HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4566777888899999999999888754311 12333     47888888887765678888999999998643322221


Q ss_pred             HHhC--CChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          155 VIDH--GAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       155 i~~~--g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      +...  ..++.++..+.  ..+..++..++.++.++...-+..-. .......++.+...+ ++++++++..++.++..+
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            1110  23344444443  36789999999999998755432111 111122355566666 788999999999999999


Q ss_pred             hcCCCCCChhhhhchHHH-HHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH----------------cCChHHHHh
Q 014864          230 CRGKPQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVFPRLAE  292 (417)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~-L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~  292 (417)
                      +...+..-.......+.. +.....+.++.++..++..+..++............                ..+++.+..
T Consensus       252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~  331 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN  331 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            876543333333333333 344556678889988888777765432211111110                123455555


Q ss_pred             hcCCC-------ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHH
Q 014864          293 FLMHP-------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQ  364 (417)
Q Consensus       293 ~l~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~  364 (417)
                      .+...       +...+..+..++..++...+.....    -..+.+...+.+. ++..+..++.+++.++.+. .....
T Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~  406 (861)
T d2bpta1         332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE----PVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRT  406 (861)
T ss_dssp             HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH----HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhh----hhcchhhhhhhhH-HHHHHHHHHHHHHHHHhhcchhhHH
Confidence            55432       2456677777777766433322111    1234455566666 8999999999999999754 33333


Q ss_pred             HHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       365 ~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ...+ .+++.++..+.+.++.+|..++|+++.++..
T Consensus       407 ~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         407 YYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence            3333 5789999999999999999999999988653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.4e-08  Score=101.43  Aligned_cols=315  Identities=18%  Similarity=0.202  Sum_probs=196.1

Q ss_pred             CHHHHHhhhcCCC--hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCch
Q 014864           74 NLPVMVAGVWSND--SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (417)
Q Consensus        74 ~l~~l~~~l~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~  150 (417)
                      -++.+++.+.+++  ...+..++.++..+...- .+....-....+++.+++.+.+.+ ...++..|+.++.+.......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~-~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            3566777776644  567777888888775432 111111112345788888886543 368999999999888764322


Q ss_pred             hHH-HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~-~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      ... .....-+++.+...+.+++++++..++.+|..++...+..-...........+...+ .+.+..+...++..+..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            111 111112456777788889999999999999999865554333333332333444444 667777777777777766


Q ss_pred             hcCC----------------CC-CCh----hhhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHHHH
Q 014864          230 CRGK----------------PQ-PPF----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAV  281 (417)
Q Consensus       230 ~~~~----------------~~-~~~----~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~  281 (417)
                      +...                +. ...    ......+|.+...+...       +..++..+..++..++......   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~  363 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---h
Confidence            6421                10 111    11234445555554321       2346677777777665332211   1


Q ss_pred             HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (417)
Q Consensus       282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (417)
                      +. .+++.+...+.++++..+..++..++.+..+.......-.-..+++.+...+.++ ++.+|..++|+++.++...+.
T Consensus       364 ~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~  441 (876)
T d1qgra_         364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGG
T ss_pred             hh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcch
Confidence            11 1455666777888999999999999999877654333333446788999999998 999999999999999863222


Q ss_pred             HHHHHHHCC----CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864          362 QIQAVIEAN----IIGPLVALLENAEFDIKKEAAWAISNATS  399 (417)
Q Consensus       362 ~~~~l~~~~----~i~~L~~~l~~~~~~v~~~a~~~L~nl~~  399 (417)
                      ..   ....    +++.+...+. +++.++..+++++.++..
T Consensus       442 ~~---~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         442 AA---INDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             GT---SSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             hh---hhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            11   1112    3444555554 478999999999999864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=4.5e-09  Score=104.72  Aligned_cols=311  Identities=11%  Similarity=0.152  Sum_probs=187.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC
Q 014864           80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (417)
Q Consensus        80 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  159 (417)
                      ..+.++++..+..|+..+..+.... .+....-.-..+++.++..+.+++ +.++..++++++.++...+..   +....
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~  450 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAES---IDPQQ  450 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGG---SCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhchh---hhhHH
Confidence            3455788889999999888886543 222222223346899999999988 999999999999987632111   11122


Q ss_pred             ChhHHHHhh---CCCCHHHHHHHHHHHHHhhCC----Cc-hHHHHHHhcCCHHHHHHHhcC-CCchhHHHHHHHHHhhhh
Q 014864          160 AVPIFVKLL---YSPSDDVREQAVWALGNIAGD----SP-RCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       160 ~i~~L~~ll---~~~~~~i~~~a~~~L~nl~~~----~~-~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~  230 (417)
                      .++.++..+   ...++.+...+++++.+++..    .. ......  ...+..++..... ..+..++..+..++..+.
T Consensus       451 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i  528 (861)
T d2bpta1         451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMV  528 (861)
T ss_dssp             THHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            333333322   135678888888888877631    11 111111  1124455555532 346678888888888888


Q ss_pred             cCCCCCChhhhhchHHHHHH----hhcCCC-----------hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864          231 RGKPQPPFDQVSPALPALAH----LIHSND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~----ll~~~~-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~  295 (417)
                      ...+...........+.+..    .+....           ..++..++.++..+............+ .+++.+...+.
T Consensus       529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~l~  607 (861)
T d2bpta1         529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLE  607 (861)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhhhcc
Confidence            76544333333333333333    232211           123333444444443222111111111 24555666665


Q ss_pred             CC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Q 014864          296 HP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGP  374 (417)
Q Consensus       296 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  374 (417)
                      .. +..++..++.+++.++..........+ ..++|.+...+++. ++.++..|+.+++.++...++....... .+++.
T Consensus       608 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~~~  684 (861)
T d2bpta1         608 KKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMMNV  684 (861)
T ss_dssp             STTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHHHH
Confidence            44 467888999999998865443333222 25788999999988 8899999999999998744443333332 47888


Q ss_pred             HHHHhccC--CHHHHHHHHHHHHHhhCCC
Q 014864          375 LVALLENA--EFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       375 L~~~l~~~--~~~v~~~a~~~L~nl~~~~  401 (417)
                      |++.+.+.  +..+|..++.+|+.++...
T Consensus       685 L~~~l~~~~~~~~~k~~~~~~l~~i~~~~  713 (861)
T d2bpta1         685 LAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            88888764  5689999999999987653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=2.4e-07  Score=82.66  Aligned_cols=276  Identities=13%  Similarity=0.087  Sum_probs=179.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH-HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  154 (417)
                      +.+...+.+++......+...+..+++.. .......- .......+-.+...++ .+.+..++.++..+... ++.+..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr~-~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAVI-PEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhcC-ccHHHH
Confidence            44455566677777777777777776553 22222110 1112333344445566 78888899999998885 777777


Q ss_pred             HHh--CCChhHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhc--CCHHHHHHHhcCC
Q 014864          155 VID--HGAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQ  213 (417)
Q Consensus       155 i~~--~g~i~~L~~ll~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~  213 (417)
                      +..  ...++.|+..|..                 .+..++.+++.+++-++.+.. ....+.+.  +.++.++.++..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhh
Confidence            643  2345556555532                 235788999999999987654 44555554  3488889999888


Q ss_pred             CchhHHHHHHHHHhhhhcCCCCCCh------hhhhchHHHHHHhhcC--CChHHHHHHHHHHHH-------hccCChHHH
Q 014864          214 PKLSMLRNATWTLSNFCRGKPQPPF------DQVSPALPALAHLIHS--NDDEVLTDACWALSY-------LSDGTNDKI  278 (417)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~~~~------~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~-------l~~~~~~~~  278 (417)
                      ..+.+.+-++.++.|++........      ....++++.+..+...  .|+++..+.-..-..       ++.- ++..
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsf-d~Y~  359 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSF-DEYV  359 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHH-HHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence            8999999999999999976422111      1123445554444332  377765543222111       1110 0111


Q ss_pred             HH----------------HHHc----------CChHHHHhhcC----------CCChhhHHHHHHHHHHhhcCChHHHHH
Q 014864          279 QA----------------VIEA----------GVFPRLAEFLM----------HPSPSVLIPALRTVGNIVTGDDMQTQC  322 (417)
Q Consensus       279 ~~----------------~~~~----------~~~~~L~~~l~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~  322 (417)
                      ..                +-..          .++..|+.+|.          +.++.+..-||.=||.++...+.....
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~i  439 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV  439 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHH
Confidence            11                1111          34678888885          235777888999999999999988887


Q ss_pred             HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      +-+.|+=..++.++.++ +++||.+|..++..+..
T Consensus       440 l~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         440 LDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            77889999999999999 99999999999988754

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-07  Score=94.76  Aligned_cols=311  Identities=13%  Similarity=0.064  Sum_probs=193.2

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCC-chhH
Q 014864           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEHT  152 (417)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~-~~~~  152 (417)
                      ..+++.+.+++. .+..++.++..++..+- ...|     .+++|.|++.+.+++ .+.++..++.+|..++..- ++..
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W-----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~  166 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence            456666766554 34445666666654320 1112     246889999887654 3678888999999987632 2221


Q ss_pred             HHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          153 KVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      .... ..+++.++..+.+  ++..++..++.++.+........-. .....-.++.+...+ +++++.++..++.++..+
T Consensus       167 ~~~~-~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             GGGH-HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            1111 2467788887764  5678999999999887754332111 001111244455555 778899999999999999


Q ss_pred             hcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH--------------------HHHcCChH
Q 014864          230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA--------------------VIEAGVFP  288 (417)
Q Consensus       230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~--------------------~~~~~~~~  288 (417)
                      +...+....... ..+.+.+...+.++++++...++..+..++.........                    .....+++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (876)
T d1qgra_         245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP  324 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            886544333333 334556666777778888877777666665322111100                    01112334


Q ss_pred             HHHhhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH
Q 014864          289 RLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR  360 (417)
Q Consensus       289 ~L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~  360 (417)
                      .+...+..       .+..++..|..++..++.......-    ..+++.+...+.+. ++..|..+++.++.+..+ ..
T Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~  399 (876)
T d1qgra_         325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV----PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCH
T ss_pred             hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhH
Confidence            44444432       2245677777777777643332211    12345666777777 899999999999999875 34


Q ss_pred             HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (417)
Q Consensus       361 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~  400 (417)
                      ........ .+++.++..+.++++.++..|+|+++.++..
T Consensus       400 ~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         400 SQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence            44444333 5788999999999999999999999998753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.2e-06  Score=78.01  Aligned_cols=321  Identities=12%  Similarity=0.051  Sum_probs=200.6

Q ss_pred             CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHH----HHHhC--CHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEE----VIRSG--VVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~g--~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      .+..+++.|.. ..+++....+..+..++..+  +....    +....  .-+.+..++..++ .-....+...+..++.
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d--~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC--cchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence            46778888875 55666677777788887654  22221    11211  2345556665555 5667777777888877


Q ss_pred             CCchhHHHHHhC-CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh--cCCHHHHHHHhcC-----------
Q 014864          147 GTSEHTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNG-----------  212 (417)
Q Consensus       147 ~~~~~~~~i~~~-g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~-----------  212 (417)
                      .........-.. .....+-.+....+...+..|+.++..+....+ +|..+..  ...+.+++..+..           
T Consensus       152 ~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         152 NGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            543332211111 123333344466888888899999988887755 7777643  3346666666621           


Q ss_pred             -----CCchhHHHHHHHHHhhhhcCCCCCChhhh--hchHHHHHHhhcC-CChHHHHHHHHHHHHhccCCh-----HHHH
Q 014864          213 -----QPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLIHS-NDDEVLTDACWALSYLSDGTN-----DKIQ  279 (417)
Q Consensus       213 -----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~-----~~~~  279 (417)
                           .....++..++.+++-|+...........  ...++.++.++.. .-+++..-++.++.|++....     ....
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  310 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  310 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence                 12357788899999998875322111111  2447778888754 467888888999999986532     1234


Q ss_pred             HHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhc----------------------CChHHH-HHHH----------
Q 014864          280 AVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVT----------------------GDDMQT-QCVI----------  324 (417)
Q Consensus       280 ~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~----------------------~~~~~~-~~~~----------  324 (417)
                      .++..++++.+-.+....  |+++. ..+..|.....                      -++..+ ..+.          
T Consensus       311 ~~v~~~~l~~l~~L~~r~~~Dedl~-edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         311 LLLLGNALPTVQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHHCHHHHHHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHcchhHHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            456666665544443332  44432 22222222211                      111111 1122          


Q ss_pred             HcCChHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864          325 EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (417)
Q Consensus       325 ~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~  395 (417)
                      +..++..|+++|.+         +.++.+..-||.=+|.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+.
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ  469 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ  469 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            12557889999862         227788899999999999987877777777899999999999999999999999998


Q ss_pred             HhhC
Q 014864          396 NATS  399 (417)
Q Consensus       396 nl~~  399 (417)
                      .+..
T Consensus       470 klm~  473 (477)
T d1ho8a_         470 AIIG  473 (477)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.54  E-value=5.9e-09  Score=76.02  Aligned_cols=109  Identities=21%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             hcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 014864          252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (417)
Q Consensus       252 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  331 (417)
                      |.++|+.|+..++++|+.+..            ..++.|+..|.++++.++..|+++|+++..  +         +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence            345677788888888776531            246778899999999999999999998752  1         24688


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864          332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (417)
Q Consensus       332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~  395 (417)
                      |..+|+++ ++.||..|+++|+.+.  ++         +.++.|..+++++++.+|..|+.+|.
T Consensus        58 L~~~l~d~-~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDD-SGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHC-CTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccc-hhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999998 9999999999999883  23         35777888999999999999998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.42  E-value=1.8e-08  Score=73.38  Aligned_cols=108  Identities=18%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHH
Q 014864          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP  205 (417)
Q Consensus       126 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~  205 (417)
                      ++++ +.+|..|+++|+.+..            ..++.|+..|.++++.++..++++|+++...           +.++.
T Consensus         2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~   57 (111)
T d1te4a_           2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEP   57 (111)
T ss_dssp             CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHH
T ss_pred             CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHH
Confidence            4455 6778888888776532            4678899999999999999999999987421           24678


Q ss_pred             HHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH
Q 014864          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (417)
Q Consensus       206 L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  268 (417)
                      |..++ .++++.++..++++|..+..          ...++.|..++.++++.++..++.+|.
T Consensus        58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88988 67899999999999998743          367888999999999999999888764

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00089  Score=55.70  Aligned_cols=240  Identities=15%  Similarity=0.178  Sum_probs=165.0

Q ss_pred             HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH----HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (417)
Q Consensus       155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~  230 (417)
                      +...+.+..|+..|..-+.+-+..+..+++++.+.....+    +.+...  ...+..++....++++.-.+...|....
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence            3445788889999988889999999999999986544333    444432  3444444444456777777777777777


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC---ChHHHHhhcCCCChhhHHHHHH
Q 014864          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG---VFPRLAEFLMHPSPSVLIPALR  307 (417)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~~~~L~~~l~~~~~~v~~~a~~  307 (417)
                      +...-.......+.+-.+...+..++-++..+|..++..+...+......++..+   ++...-.+|.+++.-++..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            7643333344455666777888889999999999999988777766555565543   5677788999999999999999


Q ss_pred             HHHHhhcCChHH---HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHH--CCCHHHHHHHh
Q 014864          308 TVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIE--ANIIGPLVALL  379 (417)
Q Consensus       308 ~L~~l~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~~l  379 (417)
                      .||.+.......   ..++-+..-+..++.+|++. +..++-+|..++--++++   +++....+..  ..++..|-++.
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~  301 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ  301 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCC
Confidence            999998655422   22333446688899999999 999999999999998873   3444444442  33455555544


Q ss_pred             cc--CCHHHHHHHHHHHHHh
Q 014864          380 EN--AEFDIKKEAAWAISNA  397 (417)
Q Consensus       380 ~~--~~~~v~~~a~~~L~nl  397 (417)
                      .+  .|.....+=...+..+
T Consensus       302 ~d~~~DeqF~~EK~~lI~~I  321 (330)
T d1upka_         302 NDRTEDEQFNDEKTYLVKQI  321 (330)
T ss_dssp             TTC-CCSHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHH
Confidence            33  2555554444444433

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0034  Score=52.14  Aligned_cols=201  Identities=13%  Similarity=0.104  Sum_probs=148.3

Q ss_pred             HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh---hh---hchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD---QV---SPALPALAHLIHSNDDEVLTDACWALSY  269 (417)
Q Consensus       196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~---~~---~~~l~~L~~ll~~~~~~v~~~a~~~l~~  269 (417)
                      .+...+.+..|+..| ..-+-+.++.++.+++++.+........   .+   ..++..|+....  ++++.-.+-..|..
T Consensus        64 e~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHH
Confidence            344556777788888 7778999999999999999976433222   11   234444554443  34443343344444


Q ss_pred             hccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHH
Q 014864          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKK  346 (417)
Q Consensus       270 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~  346 (417)
                      +. ..+.....++....+..+.++++.++-++...|..++..+...+......++..   .++..+..+|.++ +.-+|+
T Consensus       141 ci-k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrR  218 (330)
T d1upka_         141 CI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  218 (330)
T ss_dssp             HH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             HH-hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHH
Confidence            44 445566778888889999999999999999999999999998888766666654   3556677888888 999999


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864          347 EACWTVSNITA--GNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (417)
Q Consensus       347 ~a~~~L~nl~~--~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~  401 (417)
                      .+...|+.+..  .+.......+ +..-+..++.+|++....++.+|..++.-++...
T Consensus       219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            99999999985  3343333333 4456888999999999999999999999999886

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.41  E-value=0.00012  Score=59.57  Aligned_cols=176  Identities=15%  Similarity=0.056  Sum_probs=96.0

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCH
Q 014864          124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (417)
Q Consensus       124 lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i  203 (417)
                      +|.++. .+++..|+.                  .-.+..|..+++++++.|+..+++.|+                  .
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~   92 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP------------------R   92 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC------------------S
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC------------------H
Confidence            566666 677766652                  134667778888999999988876542                  1


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHH-----HHHhccCCh-HH
Q 014864          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA-----LSYLSDGTN-DK  277 (417)
Q Consensus       204 ~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~-----l~~l~~~~~-~~  277 (417)
                      ..+..++ .+++..++..++..+.                 .+.|..++.+++..|+..++..     |..+....+ +.
T Consensus        93 ~~L~~L~-~D~d~~VR~~aa~~l~-----------------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~V  154 (233)
T d1lrva_          93 EQLSALM-FDEDREVRITVADRLP-----------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQV  154 (233)
T ss_dssp             GGGGGTT-TCSCHHHHHHHHHHSC-----------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHH
T ss_pred             HHHHHHh-cCCChhHHHHHHhccC-----------------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHH
Confidence            2233334 5666666666654321                 1234455555666666555432     111111111 11


Q ss_pred             HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (417)
Q Consensus       278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (417)
                      ...+...-..+.|..+++++++.++..++..++                  .+.|..++.++ ++.||..++.       
T Consensus       155 R~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~------------------~~~L~~l~~D~-d~~VR~aaae-------  208 (233)
T d1lrva_         155 RKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR------------------GDDLLELLHDP-DWTVRLAAVE-------  208 (233)
T ss_dssp             HHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC------------------GGGGGGGGGCS-SHHHHHHHHH-------
T ss_pred             HHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC------------------cHHHHHHHhCC-CHHHHHHHHH-------
Confidence            111111122344555566666666665554332                  23455566666 7777766542       


Q ss_pred             CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864          358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (417)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  392 (417)
                                  .+.+.++..|.+++++||..|..
T Consensus       209 ------------~~~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         209 ------------HASLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             ------------HSCHHHHHHCCCCCHHHHHHHHC
T ss_pred             ------------hccHHHHHHhCCCCHHHHHHHHH
Confidence                        12345677888899999988764

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.03  E-value=0.00025  Score=57.61  Aligned_cols=157  Identities=17%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHH-----HhhCC-Cc
Q 014864          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-----NIAGD-SP  191 (417)
Q Consensus       118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~-----nl~~~-~~  191 (417)
                      +..|..++++++ +.++..|++.|.                  .+.|..++.+++..|+..++..+.     .+..+ +.
T Consensus        68 ~~~L~~Ll~D~d-~~VR~~AA~~Lp------------------~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~  128 (233)
T d1lrva_          68 VEALTPLIRDSD-EVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADRLPLEQLEQMAADRDY  128 (233)
T ss_dssp             GGGGGGGTTCSS-HHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSH
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHHcC------------------HHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCH
Confidence            455667777777 788888775431                  233455555666666655544321     11111 11


Q ss_pred             hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (417)
Q Consensus       192 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  271 (417)
                      ..|...........|..++ .++++.++..++..+                 ..+.|..+++++++.|+..++..+    
T Consensus       129 ~VR~~aa~~~~~~~L~~L~-~D~d~~VR~~aA~~~-----------------~~~~L~~l~~D~d~~VR~~aa~~L----  186 (233)
T d1lrva_         129 LVRAYVVQRIPPGRLFRFM-RDEDRQVRKLVAKRL-----------------PEESLGLMTQDPEPEVRRIVASRL----  186 (233)
T ss_dssp             HHHHHHHHHSCGGGGGGTT-TCSCHHHHHHHHHHS-----------------CGGGGGGSTTCSSHHHHHHHHHHC----
T ss_pred             HHHHHHHhccchhHHHHHh-cCCCHHHHHHHHHhc-----------------CHHHHHHHccCCCHHHHHHHHHhc----
Confidence            1111111111222233333 455555555444311                 123455666666777776665433    


Q ss_pred             cCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHH
Q 014864          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC  349 (417)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  349 (417)
                                    ..+.|..++.++++.|+..+...+                   .+.++..|.++ ++.||..+.
T Consensus       187 --------------~~~~L~~l~~D~d~~VR~aaae~~-------------------~~~ll~~L~D~-d~~VR~aA~  230 (233)
T d1lrva_         187 --------------RGDDLLELLHDPDWTVRLAAVEHA-------------------SLEALRELDEP-DPEVRLAIA  230 (233)
T ss_dssp             --------------CGGGGGGGGGCSSHHHHHHHHHHS-------------------CHHHHHHCCCC-CHHHHHHHH
T ss_pred             --------------CcHHHHHHHhCCCHHHHHHHHHhc-------------------cHHHHHHhCCC-CHHHHHHHH
Confidence                          135677888889999988775321                   23456777877 999998875

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.82  E-value=0.068  Score=45.51  Aligned_cols=200  Identities=14%  Similarity=0.109  Sum_probs=122.8

Q ss_pred             CHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC----CCHHHHHHHHHHHHHhhC---
Q 014864          117 VVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG---  188 (417)
Q Consensus       117 ~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~---  188 (417)
                      .+..+.+++.+.. .+......++.+......+.         ..+..+..++.+    .++.++..++.++|+++.   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~---------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQATR---------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH---------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH---------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4555677776654 12222233333333222211         234556666664    578888999999988862   


Q ss_pred             -CCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-------Ch
Q 014864          189 -DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-------DD  257 (417)
Q Consensus       189 -~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~  257 (417)
                       ..+.+..     ..++.+...+.   ...+.+-...++.+|+|+..          ...++.+..++...       +.
T Consensus       160 ~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~  224 (336)
T d1lsha1         160 ANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYST  224 (336)
T ss_dssp             TTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCH
T ss_pred             cCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccH
Confidence             2222222     12344444432   34566667778899999864          24577788877532       46


Q ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 014864          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (417)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  335 (417)
                      .++..|++++.+++...+..++        +.+.+++.+  .++++|..|+..|-..  .+. .       ..+..+...
T Consensus       225 ~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~-~-------~~l~~i~~~  286 (336)
T d1lsha1         225 RVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPS-V-------ALVSMVAVR  286 (336)
T ss_dssp             HHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC-H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc--CCC-H-------HHHHHHHHH
Confidence            7999999999999887654433        344555443  3578898888877442  222 1       124567777


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC
Q 014864          336 LSGNYKKSIKKEACWTVSNITAG  358 (417)
Q Consensus       336 l~~~~~~~v~~~a~~~L~nl~~~  358 (417)
                      +..+.+..|.......|.+++..
T Consensus       287 l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         287 LRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhC
Confidence            77665888888888889999873

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.68  E-value=0.15  Score=43.30  Aligned_cols=207  Identities=14%  Similarity=0.130  Sum_probs=125.6

Q ss_pred             ChhHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC---CchhHHHHHHHHHhhhhc---
Q 014864          160 AVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ---PKLSMLRNATWTLSNFCR---  231 (417)
Q Consensus       160 ~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~~a~~~l~~l~~---  231 (417)
                      ++..+.+++.+.  ........++.+.....-++   +      .+..+..++...   .++.+...+.-+++++..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~---~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQATR---E------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH---H------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH---H------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            445566666543  23333344445544332222   2      345566666321   356666666666665543   


Q ss_pred             -CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-------CChhhHH
Q 014864          232 -GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-------PSPSVLI  303 (417)
Q Consensus       232 -~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-------~~~~v~~  303 (417)
                       ..+.........+...+.+.....+.+-..-++.+|+|+.  .+         +.++.|.+++..       .+..+|.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--QP---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CG---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--CH---------hHHHHHHHHhcccccccccccHHHHH
Confidence             4344444444455555666666677777777889999985  22         246777777753       2467999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc-c
Q 014864          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-N  381 (417)
Q Consensus       304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~  381 (417)
                      .|++++.++....+....        +.+..++.+. .++++|..|+..|... .-+..         .+..+...+. +
T Consensus       229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            999999999887664433        3344554333 3789999998888664 21222         3445555554 4


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCHH
Q 014864          382 AEFDIKKEAAWAISNATSGGTHE  404 (417)
Q Consensus       382 ~~~~v~~~a~~~L~nl~~~~~~~  404 (417)
                      ++..|.......|.+++...+++
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcc
Confidence            67889999999999998876553

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.024  Score=55.93  Aligned_cols=306  Identities=8%  Similarity=0.027  Sum_probs=154.1

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh-----------HH
Q 014864           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-----------TK  153 (417)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-----------~~  153 (417)
                      ..+.++..+++.+........++   .  -..+++.++.+|.+++ +.++..|++++..++......           ..
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~~~~---~--~~~~~~~l~~~L~~~~-~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~  543 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQLTKA---Q--LIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS  543 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSCHH---H--HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred             chHHHHHHHHHHHHHHHhhccHH---H--HHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHhhcccccchhhccHHHHH
Confidence            34667888888888775432111   1  1346899999999888 899999999999998632211           00


Q ss_pred             HHHhCCChhHHHHhhCCCC---HHH--HHHHHHHHHHhhC---C-CchHHHHHHhcCCHHHHHHHh----cCCCchhHHH
Q 014864          154 VVIDHGAVPIFVKLLYSPS---DDV--REQAVWALGNIAG---D-SPRCRDLVLSQGGLVPLLAQL----NGQPKLSMLR  220 (417)
Q Consensus       154 ~i~~~g~i~~L~~ll~~~~---~~i--~~~a~~~L~nl~~---~-~~~~~~~~~~~g~i~~L~~ll----~~~~~~~~~~  220 (417)
                      ..+. ..+..++..+....   ...  .+.++.++..+..   + -..+...     .++.+...+    ....++....
T Consensus       544 p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~-----i~~~l~~~~~~~~~~~~~~~~~~  617 (959)
T d1wa5c_         544 NSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTH  617 (959)
T ss_dssp             TTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             hhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCccchHHHH
Confidence            0111 23344455443311   111  2335555555441   1 1112222     223333332    2334566777


Q ss_pred             HHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCCh
Q 014864          221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (417)
Q Consensus       221 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  299 (417)
                      .+..++..+.... +.........++|.+...+..+..+....++..+..+..........+  ...++.++........
T Consensus       618 ~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~  695 (959)
T d1wa5c_         618 YTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESI--KPLAQPLLAPNVWELK  695 (959)
T ss_dssp             HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTT--GGGHHHHTSGGGGCCT
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHH--HHHHHHHhhHHHHHHh
Confidence            7778888877653 222223336677888888876666656666655554432211100000  0122333322222222


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHH
Q 014864          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQAVIEANIIGPLVAL  378 (417)
Q Consensus       300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~~  378 (417)
                      .....+...+.++....+.....  ..+.+..+..++...   .....+...+..+.... .+.....+. .++..++..
T Consensus       696 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~l~~~---~~~~~~~~ll~~ii~~~~~~~~~~~l~-~i~~~~~~~  769 (959)
T d1wa5c_         696 GNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASK---AYEVHGFDLLEHIMLLIDMNRLRPYIK-QIAVLLLQR  769 (959)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCT---TTHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHG
T ss_pred             hhHHHHHHHHHHHHHhCHHhhcc--hHHHHHHHHHHHCCC---cchHHHHHHHHHHHHHCchhhhHhHHH-HHHHHHHHH
Confidence            33444445554444322211100  012344455556544   23456677777766432 222222222 345555666


Q ss_pred             hccC-CHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864          379 LENA-EFDIKKEAAWAISNATSGGTHEQIKYEH  410 (417)
Q Consensus       379 l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~l~  410 (417)
                      +... .+.+....++.++.++...+++....++
T Consensus       770 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  802 (959)
T d1wa5c_         770 LQNSKTERYVKKLTVFFGLISNKLGSDFLIHFI  802 (959)
T ss_dssp             GGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            6543 5777888888888887654555444444

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.025  Score=55.78  Aligned_cols=260  Identities=9%  Similarity=0.061  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHH--------HhcCC
Q 014864          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLV--------LSQGG  202 (417)
Q Consensus       133 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~--------~~~g~  202 (417)
                      .+..|...+..++...++.....+-.-+...+.....  +.+...++.++.+++.++..........        +..-.
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4555666666666543332221111111111222222  2567788889988888864321100000        00001


Q ss_pred             HHHHHHHhc--CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH----
Q 014864          203 LVPLLAQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND----  276 (417)
Q Consensus       203 i~~L~~ll~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~----  276 (417)
                      ...+...+.  ....+.++..++|+++..+...+   ......+++.++.+|.+++..++..|++++..++.....    
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence            112222231  33456788899999999987532   334567899999999999999999999999998753221    


Q ss_pred             -------HHHHHHHcCChHHHHhhcCCCCh-----hhHHHHHHHHHHhhcCCh----HHHHHHHHcCChHHHHHhhcCCC
Q 014864          277 -------KIQAVIEAGVFPRLAEFLMHPSP-----SVLIPALRTVGNIVTGDD----MQTQCVIEYQALPCLLNLLSGNY  340 (417)
Q Consensus       277 -------~~~~~~~~~~~~~L~~~l~~~~~-----~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~l~~L~~ll~~~~  340 (417)
                             .....+. .++..++..+.....     .....++.+++.+.....    .....++ ..+.+.+....+++.
T Consensus       534 ~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~  611 (959)
T d1wa5c_         534 AFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL-AQFIEIVTIMAKNPS  611 (959)
T ss_dssp             CBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHH-HHHHHHHHHHTTSCC
T ss_pred             hhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcc
Confidence                   0000111 123444444433221     122345666665543221    1222111 122223333334443


Q ss_pred             chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864          341 KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (417)
Q Consensus       341 ~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~  398 (417)
                      ++.....+..+++.+.. .+++....+. ..++|.+...+.....+....+...+..+.
T Consensus       612 ~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         612 NPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            56667777777887764 3343333332 356777777777665555555555554443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.39  Score=40.67  Aligned_cols=159  Identities=10%  Similarity=0.082  Sum_probs=104.1

Q ss_pred             HHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC---------C-CCHHHHHHHHHHHHHH
Q 014864           76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR---------E-DYPQLQFEAAWALTNI  144 (417)
Q Consensus        76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~---------~-~~~~~~~~a~~~L~~l  144 (417)
                      ...+..|+++- .......+..|+--+...+..-++.+ ..+++..|+.+|..         . .+...+.+++.||..+
T Consensus         5 ~~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkal   83 (343)
T d2bnxa1           5 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   83 (343)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Confidence            34566666543 23334456666655555322224445 45567777777631         1 1256889999999999


Q ss_pred             hCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC--chHHHH----------HHhcCCHHHHHHHhcC
Q 014864          145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS--PRCRDL----------VLSQGGLVPLLAQLNG  212 (417)
Q Consensus       145 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~--~~~~~~----------~~~~g~i~~L~~ll~~  212 (417)
                      ..........+-..+++..++..+.+++..++..|+.+|..+|...  +.....          .-+.+-..+++..+..
T Consensus        84 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          84 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             hccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            9864444444555688999999999999999999999999998432  222222          2244556788888866


Q ss_pred             CCchhHHHHHHHHHhhhhcCCCC
Q 014864          213 QPKLSMLRNATWTLSNFCRGKPQ  235 (417)
Q Consensus       213 ~~~~~~~~~a~~~l~~l~~~~~~  235 (417)
                      ..+.+....++..+-.+....+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66778888888777777776443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=1.8  Score=36.36  Aligned_cols=167  Identities=12%  Similarity=0.132  Sum_probs=103.2

Q ss_pred             CCchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864          147 GTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (417)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  215 (417)
                      .+..+.+.+ ..+++..|+.+|..           .+......++.||..+.....+....+-..+++..+...+ .++.
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~  111 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV  111 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTS
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHcc-CCCc
Confidence            334555555 34566667666621           2356788899999999888777777777777888888888 7888


Q ss_pred             hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (417)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~  295 (417)
                      +.++..++..|..+|.......      +.               ..++.++.+..        ..-+.+-+..++..+.
T Consensus       112 ~~tr~~a~elL~~lc~~~~~~~------g~---------------~~vL~Al~~~~--------~~~e~~RF~~lv~~l~  162 (343)
T d2bnxa1         112 PNMMIDAAKLLSALCILPQPED------MN---------------ERVLEAMTERA--------EMDEVERFQPLLDGLK  162 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTT------HH---------------HHHHHHHHHHH--------HHHTSCTTHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHhccCCCc------hH---------------HHHHHHHHHHH--------HhcCCCcHHHHHHHHh
Confidence            9999999999999987532111      11               12222222211        1223345667777776


Q ss_pred             CC-ChhhHHHHHHHHHHhhcCChH------HHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864          296 HP-SPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIK  345 (417)
Q Consensus       296 ~~-~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~ll~~~~~~~v~  345 (417)
                      .. +.+.+..++..|-.++.+.+.      .+..+...|+.+.+-. +....++.+.
T Consensus       163 ~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~-l~~~~~~~L~  218 (343)
T d2bnxa1         163 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDMK  218 (343)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHH-HTTCCCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHH-HHccCChHHH
Confidence            55 467777788778777776653      2333445666655444 4443254443

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.6  Score=39.20  Aligned_cols=193  Identities=13%  Similarity=0.047  Sum_probs=110.9

Q ss_pred             HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (417)
Q Consensus       153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~  232 (417)
                      ...++...+..|+.++.++|+.-|+.....|..+-+.-...|..+... +...+.+.+.......-...+++.++.+..+
T Consensus       127 ~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~~if~~fi~e~~~~~gI~elLeil~sii~g  205 (343)
T d2jaka1         127 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING  205 (343)
T ss_dssp             TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             HhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Confidence            334444567889999999999999999999999987777677765543 5566777775555666677788888888877


Q ss_pred             CCCC-ChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864          233 KPQP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (417)
Q Consensus       233 ~~~~-~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~  310 (417)
                      -..+ ..+...-....++.+..... .........++......++.....     ++..++..=-..+..-...-+.-|.
T Consensus       206 f~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~-----~i~~llk~WP~t~~~Kev~FL~el~  280 (343)
T d2jaka1         206 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE  280 (343)
T ss_dssp             CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence            5433 23333344455666655443 222233333333333333322221     2222333322233344445555666


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (417)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  352 (417)
                      .+....+...-.-+...+...+...+.++ +..|-+.|....
T Consensus       281 ~il~~~~~~~f~~~~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         281 EILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            66544432221122234566677777777 777777766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.87  E-value=0.98  Score=32.61  Aligned_cols=75  Identities=8%  Similarity=-0.002  Sum_probs=57.6

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhCC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIASG  147 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~~  147 (417)
                      +++..+.+.|.+.++..+..|+..+..++.........++.+.+++..|+.+++..     .+..++..++..+...+..
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            45677888888999999999999998887654445556677888999999998631     2368888888888776653

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.50  E-value=0.82  Score=33.06  Aligned_cols=74  Identities=12%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      ++..|.+-+.++++.++..|+.+|-.+..+ ++.+...+...+.+..|.+++...++..++..++..+-..+...
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            566677788889999999999999888865 35577778788888888888866667888888888887766643

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.95  Score=37.94  Aligned_cols=180  Identities=14%  Similarity=0.092  Sum_probs=84.0

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc----h
Q 014864           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS----E  150 (417)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~----~  150 (417)
                      +..++..+.|+|+..|......+..+...  -.....++...+...+.+++.......--.+.+++++.+..|-.    +
T Consensus       135 i~~Ll~lf~S~D~rER~~lk~~l~~iy~k--f~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plke  212 (343)
T d2jaka1         135 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  212 (343)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchH
Confidence            35556666777777777777777666543  23344455555566666766544323344566666666666431    1


Q ss_pred             hHHHHHhCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864          151 HTKVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (417)
Q Consensus       151 ~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l  229 (417)
                      .-..+..    ..|+.+.+.+. .....+-..++..+...++.....     .+..+++.- ..++..-...-+.-+..+
T Consensus       213 eh~~f~~----~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~-----~i~~llk~W-P~t~~~Kev~FL~el~~i  282 (343)
T d2jaka1         213 EHKIFLL----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEI  282 (343)
T ss_dssp             HHHHHHH----HTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSS-CSSCCTTHHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHHH
Confidence            1111221    22222333321 112223333444444333332222     122333333 222322223333333333


Q ss_pred             hcCCCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHH
Q 014864          230 CRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWA  266 (417)
Q Consensus       230 ~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~  266 (417)
                      ...-+...+ ......+..+..++.+++-.|.+.|+..
T Consensus       283 l~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl~~  320 (343)
T d2jaka1         283 LDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYY  320 (343)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            333222222 2224566667777777887777776533

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.50  E-value=8.6  Score=29.37  Aligned_cols=137  Identities=7%  Similarity=-0.064  Sum_probs=82.1

Q ss_pred             HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHH-HHhhcCChHHHHHHHHcC
Q 014864          250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTV-GNIVTGDDMQTQCVIEYQ  327 (417)
Q Consensus       250 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~  327 (417)
                      .+..++--+.+..++..+.......++.        .++.+..++.+. ++.+....+..+ +.+....+         .
T Consensus        57 ~L~~~~~~E~r~~a~~ll~~~~~~~~~~--------~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~---------~  119 (213)
T d2b6ca1          57 AYYQKTEREYQYVAIDLALQNVQRFSLE--------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT---------E  119 (213)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHTGGGCCHH--------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG---------G
T ss_pred             HHHcCchHHHHHHHHHHHHHHHhccCHH--------HHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhh---------h
Confidence            4445555566666666666554333221        133344444443 466666655554 33443332         2


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (417)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~  406 (417)
                      ..+.+..+..++ +.-+|+.|+.+...... ++.+.        ++..+..++.++++-|++...|+|..++.. +++.+
T Consensus       120 ~~~~l~~w~~s~-~~w~rR~aiv~~l~~~~~~~~~~--------~~~~~~~~~~d~e~~i~kAigW~Lre~~k~-~p~~v  189 (213)
T d2b6ca1         120 LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWV  189 (213)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcccHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHHH-CHHHH
Confidence            245677888888 88888877665443332 33321        234455666788899999999999999876 77777


Q ss_pred             HHHHhcC
Q 014864          407 KYEHTFC  413 (417)
Q Consensus       407 ~~l~~~g  413 (417)
                      ..+++..
T Consensus       190 ~~fl~~~  196 (213)
T d2b6ca1         190 EELMKEL  196 (213)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            7777654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=3.5  Score=29.47  Aligned_cols=74  Identities=18%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcC-----CCchhHHHHHHHHHhhhhcCC
Q 014864          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGK  233 (417)
Q Consensus       160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~a~~~l~~l~~~~  233 (417)
                      ++..|.+-|.+.++.++..|+.+|-.+..+ ++.++..+...+++..|++++..     ..+..++..++..+..-+...
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            455566677888999999999999888866 57888899999999999999953     245678888887776665543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.07  E-value=0.61  Score=33.77  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=52.7

Q ss_pred             cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (417)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  146 (417)
                      +++..+.+.|+++++.++..|+..+..++.........++...+++..|..++++..+..++..++..+...+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            35677777888888889998888888777654233444555667788888887665446788888777776554