Citrus Sinensis ID: 014870

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQKADDSPEAVPQPKVEAAADPPPQYPDLKPPTSPTPSQP
ccccccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccEEEEcccHHHHHHHccccccccccccEEEEcccccccHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHcccccEEEccccccccHHHHHccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccEEEEEEcccccEEEcccccHHHccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHccccHHEEEcccccccccHHHcccccccccccEEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccc
mealnpagliplsvlcdrrseprkiqslstaslpklatsasnkTTQQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQqsagssasdvdasgfidsvisfgtenplaiaGGVTILAVPLVLSQvlnkpkswgveSARNAYAKLgddasaqlldirapvefrqvgspdvrglgkrpvsivykgddkpgfLKKLSLkfkepenttlfildkfdgnsELVAELVTINGFknaytikdgaegprgwmnsglpwippkkalgldlsnltetisgaigegsegFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGktllpspangkalpastdskvqkaddspeavpqpkveaaadpppqypdlkpptsptpsqp
mealnpagliplSVLCDRRSEPRKiqslstaslpklatSASNKTTQQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVefrqvgspdvrglgkrpvsivykgddkpgFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKtllpspangkaLPASTDSKVQKADDSPEAVPQPKveaaadpppqypdlkpptsptpsqp
MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKsvhgglvllssvlgtglAQALTYEEALQQsagssasdvdasgFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTlaiaaaaglgvlaFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQKADDSPEAVPQPKVEAAADpppqypdlkppTSPTPSQP
*********I*LSVL********************************NFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEA*************ASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVA************************************************************************
********LIPLSVL****************************************SVHGGLVLLSSVLGTGLAQALTYEEA************DASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKA************SGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKE*********************************************************************
MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEE*************DASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPAN*********************************PPQYPDL***********
******AGLIPLSVLCD********QSLSTASLPKLATSASNKTTQQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPS***************************************YPDL*P*********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQKADDSPEAVPQPKVEAAADPPPQYPDLKPPTSPTPSQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
Q9M158466 Rhodanese-like domain-con yes no 0.870 0.778 0.682 1e-132
Q56XR7264 Rhodanese-like domain-con no no 0.410 0.647 0.358 2e-23
Q9AKI4123 Uncharacterized protein R yes no 0.256 0.869 0.321 3e-05
Q9ZCV8123 Uncharacterized protein R yes no 0.256 0.869 0.313 3e-05
P0A3K3123 Uncharacterized protein i yes no 0.256 0.869 0.321 4e-05
P0A3K2123 Uncharacterized protein R yes no 0.256 0.869 0.321 4e-05
Q9FN48387 Calcium sensing receptor, no no 0.136 0.147 0.333 7e-05
>sp|Q9M158|STR4_ARATH Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2 Back     alignment and function desciption
 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/375 (68%), Positives = 296/375 (78%), Gaps = 12/375 (3%)

Query: 1   MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGG 60
           MEAL  A   P+SVL ++RSEPRK       SLP L    S +   Q   E F K  +GG
Sbjct: 1   MEALKTATFSPMSVLSEKRSEPRK-----PFSLPNLFPPKSQRPISQ---ESFLKRFNGG 52

Query: 61  LVLLSSVL--GTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVT 118
           L LL+SVL   T  A++LTYEEALQQS  +S+S  D+ G I+ + +F T+NPL IAGGV 
Sbjct: 53  LALLTSVLSSATAPAKSLTYEEALQQSMTTSSS-FDSDGLIEGISNFVTDNPLVIAGGVA 111

Query: 119 ILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLG 177
            LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLG
Sbjct: 112 ALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLG 171

Query: 178 KRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTI 237
           K+ VS VY G+DKPGFLKKLSLKFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY I
Sbjct: 172 KKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAI 231

Query: 238 KDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGV 297
           KDGAEGPRGW+NS LPWI PKK L LDLS+LT++ISG  GE S+G SV L +AAAAGL V
Sbjct: 232 KDGAEGPRGWLNSSLPWIEPKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSV 291

Query: 298 LAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 357
            AF+EIETILQ+LGSAALVQ A KKLLFAEDRKQTL+QVDEFLNTKVAPKEL D++K+IG
Sbjct: 292 FAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAPKELVDELKEIG 351

Query: 358 KTLLPSPANGKALPA 372
           K LLP   + KALPA
Sbjct: 352 KALLPQSTSNKALPA 366
Rhodanese domain-containing protein required for anchoring ferredoxin--NADP reductase to the thylakoid membranes and sustaining efficient linear electron flow (LEF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q56XR7|STR4A_ARATH Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana GN=STR4A PE=2 SV=1 Back     alignment and function description
>sp|Q9AKI4|Y600_RICRI Uncharacterized protein RP600 homolog OS=Rickettsia rickettsii PE=4 SV=1 Back     alignment and function description
>sp|Q9ZCV8|Y600_RICPR Uncharacterized protein RP600 OS=Rickettsia prowazekii (strain Madrid E) GN=RP600 PE=4 SV=1 Back     alignment and function description
>sp|P0A3K3|YDNAA_RICMO Uncharacterized protein in dnaA 5'region OS=Rickettsia montana PE=4 SV=1 Back     alignment and function description
>sp|P0A3K2|Y915_RICCN Uncharacterized protein RC0915 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0915 PE=4 SV=1 Back     alignment and function description
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
224130512434 predicted protein [Populus trichocarpa] 0.971 0.933 0.687 1e-155
224067966421 predicted protein [Populus trichocarpa] 0.952 0.942 0.704 1e-153
359489837 892 PREDICTED: uncharacterized protein LOC10 0.985 0.460 0.665 1e-152
217075761480 unknown [Medicago truncatula] 0.949 0.825 0.648 1e-140
255564757 938 chitinase, putative [Ricinus communis] g 0.968 0.430 0.623 1e-134
18411523466 thylakoid rhodanese-like protein [Arabid 0.870 0.778 0.682 1e-130
297745418377 unnamed protein product [Vitis vinifera] 0.860 0.952 0.602 1e-129
356560390455 PREDICTED: uncharacterized protein At4g0 0.964 0.883 0.6 1e-129
449478183 933 PREDICTED: uncharacterized LOC101206972 0.980 0.438 0.585 1e-125
356520292444 PREDICTED: uncharacterized protein At4g0 0.966 0.907 0.621 1e-124
>gi|224130512|ref|XP_002320855.1| predicted protein [Populus trichocarpa] gi|222861628|gb|EEE99170.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/426 (68%), Positives = 334/426 (78%), Gaps = 21/426 (4%)

Query: 1   MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGG 60
           MEA N A   PLSVLC+RRSE RK  SL T S  K++ S S  T++    EC ++++HGG
Sbjct: 1   MEAFNAASSTPLSVLCERRSESRKSLSLPTVSPLKISHSFSTSTSRSTTQECLSRTLHGG 60

Query: 61  LVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTIL 120
           +VLLSSVLG GLA+ALTY+EAL+QSA S +SD  A+G +DSVI FGTENP  +AG VT+L
Sbjct: 61  IVLLSSVLGNGLARALTYQEALEQSARSFSSD--ANGVLDSVIKFGTENPTIVAGSVTVL 118

Query: 121 AVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP 180
           AVPLVLS VLNK KSWGVESA+ AYA LG DA+AQLLDIRAPVEFRQVGSPD+RGL K+P
Sbjct: 119 AVPLVLSLVLNKSKSWGVESAKKAYAALGVDANAQLLDIRAPVEFRQVGSPDIRGLRKKP 178

Query: 181 VSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDG 240
           V IVY+G+DKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVT+NGFK AY IKDG
Sbjct: 179 VPIVYEGEDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTVNGFKAAYAIKDG 238

Query: 241 AEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAF 300
           AEGPRGWMNSGLPWIPPKKA  LDL +L++ I GA+GEGS+   VT AIAAA GLGVLAF
Sbjct: 239 AEGPRGWMNSGLPWIPPKKAFSLDLGDLSDAIGGALGEGSDALPVTFAIAAATGLGVLAF 298

Query: 301 SEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTL 360
           SEIE ILQ+LGSAAL+QF SKKLLFAEDRKQTL+QVDEFL TK+APKEL D++K IGK L
Sbjct: 299 SEIEAILQVLGSAALIQFVSKKLLFAEDRKQTLEQVDEFLTTKIAPKELVDELKDIGKAL 358

Query: 361 LPSPANGKAL---------PASTDSKVQKADDSPEAVPQPKVEAAAD----------PPP 401
           LP     KAL         PA+ DS VQ A+ +P+    PK EA A+          P P
Sbjct: 359 LPVAVTSKALPAPAEASPEPAAADSSVQNAEAAPQINSAPKTEAKAEPLSGFSRPLSPYP 418

Query: 402 QYPDLK 407
            YPDLK
Sbjct: 419 TYPDLK 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224067966|ref|XP_002302622.1| predicted protein [Populus trichocarpa] gi|222844348|gb|EEE81895.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359489837|ref|XP_003633983.1| PREDICTED: uncharacterized protein LOC100255153 [Vitis vinifera] Back     alignment and taxonomy information
>gi|217075761|gb|ACJ86240.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255564757|ref|XP_002523373.1| chitinase, putative [Ricinus communis] gi|223537461|gb|EEF39089.1| chitinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18411523|ref|NP_567209.1| thylakoid rhodanese-like protein [Arabidopsis thaliana] gi|73622092|sp|Q9M158.2|STR4_ARATH RecName: Full=Rhodanese-like domain-containing protein 4, chloroplastic; AltName: Full=Protein THYLAKOID RHODANESE-LIKE; AltName: Full=Sulfurtransferase 4; Short=AtStr4; Flags: Precursor gi|15982915|gb|AAL09804.1| AT4g01050/F2N1_31 [Arabidopsis thaliana] gi|16323194|gb|AAL15331.1| AT4g01050/F2N1_31 [Arabidopsis thaliana] gi|21700911|gb|AAM70579.1| AT4g01050/F2N1_31 [Arabidopsis thaliana] gi|110740713|dbj|BAE98457.1| hypothetical protein [Arabidopsis thaliana] gi|332656573|gb|AEE81973.1| thylakoid rhodanese-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297745418|emb|CBI40498.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560390|ref|XP_003548475.1| PREDICTED: uncharacterized protein At4g01050, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449478183|ref|XP_004155243.1| PREDICTED: uncharacterized LOC101206972 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520292|ref|XP_003528797.1| PREDICTED: uncharacterized protein At4g01050, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2124998466 TROL "thylakoid rhodanese-like 0.976 0.873 0.572 6.4e-115
TAIR|locus:2094488264 AT3G25480 "AT3G25480" [Arabido 0.366 0.579 0.402 1.3e-22
UNIPROTKB|Q0C3D8124 HNE_1033 "Rhodanese domain pro 0.247 0.830 0.324 6.6e-07
UNIPROTKB|Q603F5130 MCA2851 "Rhodanese domain prot 0.227 0.730 0.290 3.6e-05
TAIR|locus:2124998 TROL "thylakoid rhodanese-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 240/419 (57%), Positives = 284/419 (67%)

Query:     1 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKXXXXX 60
             MEAL  A   P+SVL ++RSEPRK  SL     PK    +    +Q++FL+ F       
Sbjct:     1 MEALKTATFSPMSVLSEKRSEPRKPFSLPNLFPPK----SQRPISQESFLKRF--NGGLA 54

Query:    61 XXXXXXXXXXXXAQALTYEEALQQXXXXXXXXXXXXXFIDSVISFGTENPLAIAGGVTIL 120
                         A++LTYEEALQQ              I+ + +F T+NPL IAGGV  L
Sbjct:    55 LLTSVLSSATAPAKSLTYEEALQQSMTTSSSFDSDG-LIEGISNFVTDNPLVIAGGVAAL 113

Query:   121 AVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR 179
             AVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLGK+
Sbjct:   114 AVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKK 173

Query:   180 PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKD 239
              VS VY G+DKPGFLKKLSLKFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY IKD
Sbjct:   174 AVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKD 233

Query:   240 GAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTXXXXXXXXXXXXX 299
             GAEGPRGW+NS LPWI PKK L LDLS+LT++ISG  GE S+G SV              
Sbjct:   234 GAEGPRGWLNSSLPWIEPKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSVFA 293

Query:   300 FSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKT 359
             F+EIETILQ+LGSAALVQ A KKLLFAEDRKQTL+QVDEFLNTKVAPKEL D++K+IGK 
Sbjct:   294 FTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAPKELVDELKEIGKA 353

Query:   360 LLPSPANGKALPA--STDSKVQKADDSPEAV--PQPKVEAAADXXXXXXXXXXXTSPTP 414
             LLP   + KALPA  +  ++ + A  +   V  P P+ E  A              P P
Sbjct:   354 LLPQSTSNKALPAPATVTAEAESATATTTTVDKPVPEPETVAATTTTVDKPVPEPEPVP 412
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0005515 "protein binding" evidence=IPI
GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2094488 AT3G25480 "AT3G25480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C3D8 HNE_1033 "Rhodanese domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q603F5 MCA2851 "Rhodanese domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M158STR4_ARATHNo assigned EC number0.68260.87050.7789yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
cd01522117 cd01522, RHOD_1, Member of the Rhodanese Homology 3e-09
COG0607110 COG0607, PspE, Rhodanese-related sulfurtransferase 8e-04
>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1 Back     alignment and domain information 
 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 144 AYAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFK 202
           A+A L  D  A L+D+R   E++   G PD   +  +   +    +  P FL +L  + K
Sbjct: 6   AWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQ---VYPDMEINPNFLAEL--EEK 60

Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPR---GWMNSGLPW 254
             ++  + +L +    S   AE     GF N Y + +G EG     G       W
Sbjct: 61  VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGW 115

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117
>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
PRK05320257 rhodanese superfamily protein; Provisional 99.89
PRK01415247 hypothetical protein; Validated 99.89
COG1054308 Predicted sulfurtransferase [General function pred 99.83
cd01518101 RHOD_YceA Member of the Rhodanese Homology Domain 99.81
PRK00142314 putative rhodanese-related sulfurtransferase; Prov 99.8
PLN02160136 thiosulfate sulfurtransferase 99.79
cd01533109 4RHOD_Repeat_2 Member of the Rhodanese Homology Do 99.79
KOG1530136 consensus Rhodanese-related sulfurtransferase [Ino 99.77
PRK00162108 glpE thiosulfate sulfurtransferase; Validated 99.76
cd01522117 RHOD_1 Member of the Rhodanese Homology Domain sup 99.76
cd01523100 RHOD_Lact_B Member of the Rhodanese Homology Domai 99.75
TIGR03865162 PQQ_CXXCW PQQ-dependent catabolism-associated CXXC 99.74
cd0152799 RHOD_YgaP Member of the Rhodanese Homology Domain 99.73
cd0153495 4RHOD_Repeat_3 Member of the Rhodanese Homology Do 99.72
COG0607110 PspE Rhodanese-related sulfurtransferase [Inorgani 99.7
cd01526122 RHOD_ThiF Member of the Rhodanese Homology Domain 99.68
cd01528101 RHOD_2 Member of the Rhodanese Homology Domain sup 99.68
cd01525105 RHOD_Kc Member of the Rhodanese Homology Domain su 99.67
cd0144496 GlpE_ST GlpE sulfurtransferase (ST) and homologs a 99.67
cd01447103 Polysulfide_ST Polysulfide-sulfurtransferase - Rho 99.67
cd01519106 RHOD_HSP67B2 Member of the Rhodanese Homology Doma 99.67
cd01521110 RHOD_PspE2 Member of the Rhodanese Homology Domain 99.67
cd01530121 Cdc25 Cdc25 phosphatases are members of the Rhodan 99.65
cd01448122 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), 99.65
smart00450100 RHOD Rhodanese Homology Domain. An alpha beta fold 99.64
cd01520128 RHOD_YbbB Member of the Rhodanese Homology Domain 99.63
cd01449118 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), 99.62
cd01531113 Acr2p Eukaryotic arsenate resistance proteins are 99.62
cd01535145 4RHOD_Repeat_4 Member of the Rhodanese Homology Do 99.62
cd0153292 4RHOD_Repeat_1 Member of the Rhodanese Homology Do 99.61
cd0152996 4RHOD_Repeats Member of the Rhodanese Homology Dom 99.6
PRK08762 376 molybdopterin biosynthesis protein MoeB; Validated 99.6
cd0152490 RHOD_Pyr_redox Member of the Rhodanese Homology Do 99.59
PF00581113 Rhodanese: Rhodanese-like domain This Prosite entr 99.59
cd01443113 Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda 99.57
cd0015889 RHOD Rhodanese Homology Domain (RHOD); an alpha be 99.54
TIGR02981101 phageshock_pspE phage shock operon rhodanese PspE. 99.53
PRK07878392 molybdopterin biosynthesis-like protein MoeZ; Vali 99.52
PRK10287104 thiosulfate:cyanide sulfurtransferase; Provisional 99.49
PRK07411390 hypothetical protein; Validated 99.47
PRK05600370 thiamine biosynthesis protein ThiF; Validated 99.45
PRK11493281 sseA 3-mercaptopyruvate sulfurtransferase; Provisi 99.42
PRK11493281 sseA 3-mercaptopyruvate sulfurtransferase; Provisi 99.41
PRK09629 610 bifunctional thiosulfate sulfurtransferase/phospha 99.4
PLN02723320 3-mercaptopyruvate sulfurtransferase 99.34
TIGR03167311 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The 99.33
PRK05597355 molybdopterin biosynthesis protein MoeB; Validated 99.33
PRK11784345 tRNA 2-selenouridine synthase; Provisional 99.32
PLN02723320 3-mercaptopyruvate sulfurtransferase 99.31
cd01446132 DSP_MapKP N-terminal regulatory rhodanese domain o 99.31
PRK09629 610 bifunctional thiosulfate sulfurtransferase/phospha 99.25
cd01445138 TST_Repeats Thiosulfate sulfurtransferases (TST) c 99.18
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 98.99
COG2897285 SseA Rhodanese-related sulfurtransferase [Inorgani 98.84
KOG2017427 consensus Molybdopterin synthase sulfurylase [Coen 98.71
COG2897285 SseA Rhodanese-related sulfurtransferase [Inorgani 98.56
KOG3772325 consensus M-phase inducer phosphatase [Cell cycle 98.08
KOG1529286 consensus Mercaptopyruvate sulfurtransferase/thios 97.36
PLN03209 576 translocon at the inner envelope of chloroplast su 97.15
PLN03209 576 translocon at the inner envelope of chloroplast su 97.09
KOG1529286 consensus Mercaptopyruvate sulfurtransferase/thios 96.49
TIGR01244135 conserved hypothetical protein TIGR01244. No membe 96.1
COG5105427 MIH1 Mitotic inducer, protein phosphatase [Cell di 96.08
PF04273110 DUF442: Putative phosphatase (DUF442); InterPro: I 95.84
PF1415990 CAAD: CAAD domains of cyanobacterial aminoacyl-tRN 95.4
PLN02777167 photosystem I P subunit (PSI-P) 90.48
COG2603334 Predicted ATPase [General function prediction only 88.89
cd00127139 DSPc Dual specificity phosphatases (DSP); Ser/Thr 88.35
PF13350164 Y_phosphatase3: Tyrosine phosphatase family; PDB: 87.05
smart00195138 DSPc Dual specificity phosphatase, catalytic domai 86.91
PLN02727 986 NAD kinase 85.13
>PRK05320 rhodanese superfamily protein; Provisional Back     alignment and domain information 
Probab=99.89  E-value=1.8e-23  Score=203.62  Aligned_cols=201  Identities=13%  Similarity=0.063  Sum_probs=137.1

Q ss_pred             HHHHHhhhhccceeeecccccccccccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccCHHHHHHHHHHHHHHHHH-H
Q 014870           49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVL-S  127 (417)
Q Consensus        49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~li~F~~~np~lia~~va~l~l~~vi-~  127 (417)
                      +.-|-..++.|||||+.||||+++|.+....+++...+..-   +.++.+..+ +++...+|+--.-.-+-  =.++. .
T Consensus        25 ~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~~---~~~~dl~~k-~~~~~~~pF~~l~vk~k--~eiv~~g   98 (257)
T PRK05320         25 LARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRAD---ARFADLQVK-ESLSDSQPFRRMLVKLK--REIITMK   98 (257)
T ss_pred             HHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhhC---CCccCceee-cccccCCCchhccchhh--hHHhhcC
Confidence            45577889999999999999999999999888888877742   233333222 13444555533111110  00100 0


Q ss_pred             H-hhcCCC-CCcccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhh
Q 014870          128 Q-VLNKPK-SWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK  200 (417)
Q Consensus       128 ~-~~~~~k-~~g~ISa~ea~elLn~~-----~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~  200 (417)
                      . ..+... ....+++.++.+++++.     ++.++||||++.||+. ||++      |++|||+..+.  ++.+.+...
T Consensus        99 ~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi~------GAiniPl~~f~--~~~~~l~~~  169 (257)
T PRK05320         99 RPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTFD------GALDYRIDKFT--EFPEALAAH  169 (257)
T ss_pred             CcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-CccC------CCEeCChhHhh--hhHHHHHhh
Confidence            0 011111 23589999999998642     3479999999999986 7776      89999986422  222233322


Q ss_pred             hCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCCCCcccccchh
Q 014870          201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNL  268 (417)
Q Consensus       201 lk~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~k~~~~dl~rq  268 (417)
                      ....++++|++||++|.||.+|++.|+++||++||+|+|||   .+|.+.--.-.-.++.|.|| +|.
T Consensus       170 ~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~G~~fVFD-~R~  233 (257)
T PRK05320        170 RADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGI---LKYFEEVGGAHYDGDCFVFD-YRT  233 (257)
T ss_pred             hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCH---HHHHHhCCCCeeeeeeeeec-Cee
Confidence            22237899999999999999999999999999999999999   99987422212334678898 654

>PRK01415 hypothetical protein; Validated Back     alignment and domain information
>COG1054 Predicted sulfurtransferase [General function prediction only] Back     alignment and domain information
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional Back     alignment and domain information
>PLN02160 thiosulfate sulfurtransferase Back     alignment and domain information
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2 Back     alignment and domain information
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00162 glpE thiosulfate sulfurtransferase; Validated Back     alignment and domain information
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1 Back     alignment and domain information
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein Back     alignment and domain information
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3 Back     alignment and domain information
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2 Back     alignment and domain information
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain Back     alignment and domain information
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain Back     alignment and domain information
>smart00450 RHOD Rhodanese Homology Domain Back     alignment and domain information
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain Back     alignment and domain information
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4 Back     alignment and domain information
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1 Back     alignment and domain information
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family Back     alignment and domain information
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily Back     alignment and domain information
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein Back     alignment and domain information
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional Back     alignment and domain information
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional Back     alignment and domain information
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional Back     alignment and domain information
>PLN02723 3-mercaptopyruvate sulfurtransferase Back     alignment and domain information
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK11784 tRNA 2-selenouridine synthase; Provisional Back     alignment and domain information
>PLN02723 3-mercaptopyruvate sulfurtransferase Back     alignment and domain information
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase Back     alignment and domain information
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional Back     alignment and domain information
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms] Back     alignment and domain information
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms] Back     alignment and domain information
>TIGR01244 conserved hypothetical protein TIGR01244 Back     alignment and domain information
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function Back     alignment and domain information
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Back     alignment and domain information
>PLN02777 photosystem I P subunit (PSI-P) Back     alignment and domain information
>COG2603 Predicted ATPase [General function prediction only] Back     alignment and domain information
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases Back     alignment and domain information
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B Back     alignment and domain information
>smart00195 DSPc Dual specificity phosphatase, catalytic domain Back     alignment and domain information
>PLN02727 NAD kinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1vee_A134 Nmr Structure Of The Hypothetical Rhodanese Domain 5e-53
2fsx_A148 Crystal Structure Of Rv0390 From M. Tuberculosis Le 7e-08
>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain At4g01050 From Arabidopsis Thaliana Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  204 bits (520), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 108/122 (88%)
Query: 141 ARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK 200
           A+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLGK+ VS VY G+DKPGFLKKLSLK
Sbjct: 9   AKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLK 68
Query: 201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKA 260
           FK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY IKDGAEGPRGW+NS LPWI PKK 
Sbjct: 69  FKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKT 128
Query: 261 LG 262
            G
Sbjct: 129 SG 130
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis Length = 148 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1vee_A134 Proline-rich protein family; hypothetical protein, 4e-37
2fsx_A148 RV0390, COG0607: rhodanese-related sulfurtransfera 5e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1qxn_A137 SUD, sulfide dehydrogenase; polysulfide-sulfur tra 4e-06
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 3e-04
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134 Back     alignment and structure
 Score =  130 bits (329), Expect = 4e-37
 Identities = 96/123 (78%), Positives = 109/123 (88%)

Query: 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL 199
           SA+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLGK+ VS VY G+DKPGFLKKLSL
Sbjct: 8   SAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSL 67

Query: 200 KFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKK 259
           KFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY IKDGAEGPRGW+NS LPWI PKK
Sbjct: 68  KFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKK 127

Query: 260 ALG 262
             G
Sbjct: 128 TSG 130
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137 Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
1vee_A134 Proline-rich protein family; hypothetical protein, 99.91
3iwh_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 99.87
4f67_A265 UPF0176 protein LPG2838; structural genomics, PSI- 99.86
3foj_A100 Uncharacterized protein; protein SSP1007, structur 99.85
2fsx_A148 RV0390, COG0607: rhodanese-related sulfurtransfera 99.85
3eme_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 99.84
1qxn_A137 SUD, sulfide dehydrogenase; polysulfide-sulfur tra 99.84
1tq1_A129 AT5G66040, senescence-associated family protein; C 99.82
3d1p_A139 Putative thiosulfate sulfurtransferase YOR285W; at 99.82
3gk5_A108 Uncharacterized rhodanese-related protein TVG08686 99.81
2hhg_A139 Hypothetical protein RPA3614; MCSG, structural gen 99.81
1gmx_A108 GLPE protein; transferase, rhodanese, sulfurtransf 99.81
3hix_A106 ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q 99.79
3ilm_A141 ALR3790 protein; rhodanese-like, NSR437H, NESG, st 99.79
3nhv_A144 BH2092 protein; alpha-beta protein, structural gen 99.76
1wv9_A94 Rhodanese homolog TT1651; CDC25, phosphatase, sulf 99.76
1t3k_A152 Arath CDC25, dual-specificity tyrosine phosphatase 99.76
2k0z_A110 Uncharacterized protein HP1203; A/B domain, struct 99.75
3flh_A124 Uncharacterized protein LP_1913; alpha-beta protei 99.75
3i2v_A127 Adenylyltransferase and sulfurtransferase MOCS3; r 99.75
2jtq_A85 Phage shock protein E; solution structure rhodanes 99.69
1e0c_A271 Rhodanese, sulfurtransferase; sulfur metabolism, t 99.69
1c25_A161 CDC25A; hydrolase, cell cycle phosphatase,dual spe 99.69
1urh_A280 3-mercaptopyruvate sulfurtransferase; rhodanese; 2 99.69
1e0c_A271 Rhodanese, sulfurtransferase; sulfur metabolism, t 99.68
3g5j_A134 Putative ATP/GTP binding protein; N-terminal domai 99.68
2a2k_A175 M-phase inducer phosphatase 2; dual specificity, s 99.67
2j6p_A152 SB(V)-AS(V) reductase; arsenate reductase, antimon 99.67
1rhs_A296 Sulfur-substituted rhodanese; transferase, sulfurt 99.66
1urh_A280 3-mercaptopyruvate sulfurtransferase; rhodanese; 2 99.66
3hzu_A318 Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, 99.65
1qb0_A211 Protein (M-phase inducer phosphatase 2 (CDC25B)); 99.64
3aay_A277 Putative thiosulfate sulfurtransferase; sulfurtran 99.64
2ouc_A142 Dual specificity protein phosphatase 10; rhodanese 99.62
1uar_A285 Rhodanese; sulfurtransferase, riken structural gen 99.61
2vsw_A153 Dual specificity protein phosphatase 16; hydrolase 99.61
1uar_A285 Rhodanese; sulfurtransferase, riken structural gen 99.61
3aay_A277 Putative thiosulfate sulfurtransferase; sulfurtran 99.61
1yt8_A 539 Thiosulfate sulfurtransferase; rhodanase domains, 99.61
3olh_A302 MST, 3-mercaptopyruvate sulfurtransferase; structu 99.6
1rhs_A296 Sulfur-substituted rhodanese; transferase, sulfurt 99.6
3op3_A216 M-phase inducer phosphatase 3; structural genomics 99.6
1yt8_A539 Thiosulfate sulfurtransferase; rhodanase domains, 99.59
3hzu_A318 Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, 99.59
2eg4_A230 Probable thiosulfate sulfurtransferase; structural 99.58
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 99.56
2wlr_A423 Putative thiosulfate sulfurtransferase YNJE; rhoda 99.55
3olh_A302 MST, 3-mercaptopyruvate sulfurtransferase; structu 99.54
3f4a_A169 Uncharacterized protein YGR203W; protein phosphata 99.54
3tg1_B158 Dual specificity protein phosphatase 10; kinase/rh 99.53
1okg_A373 Possible 3-mercaptopyruvate sulfurtransferase; rho 99.52
3ntd_A565 FAD-dependent pyridine nucleotide-disulphide oxido 99.51
2wlr_A423 Putative thiosulfate sulfurtransferase YNJE; rhoda 99.48
1whb_A157 KIAA0055; deubiqutinating enzyme, UBPY, structural 99.45
3ics_A588 Coenzyme A-disulfide reductase; pyridine nucleotid 99.45
1okg_A373 Possible 3-mercaptopyruvate sulfurtransferase; rho 99.41
1hzm_A154 Dual specificity protein phosphatase 6; hydrolase; 99.41
2gwf_A157 Ubiquitin carboxyl-terminal hydrolase 8; protein-p 99.38
3r2u_A466 Metallo-beta-lactamase family protein; structural 99.32
2eg4_A230 Probable thiosulfate sulfurtransferase; structural 99.32
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 99.14
3utn_X327 Thiosulfate sulfurtransferase TUM1; rhodanese-like 98.88
3mhp_C26 TIC62_peptide, ferredoxin--NADP reductase, LEAF is 98.79
3utn_X327 Thiosulfate sulfurtransferase TUM1; rhodanese-like 98.62
3r2u_A466 Metallo-beta-lactamase family protein; structural 98.59
2f46_A156 Hypothetical protein; structural genomics, joint c 97.16
1xri_A151 AT1G05000; structural genomics, protein structure 89.73
4erc_A150 Dual specificity protein phosphatase 23; alpha bet 89.57
3rgo_A157 Protein-tyrosine phosphatase mitochondrial 1; phos 87.32
2hcm_A164 Dual specificity protein phosphatase; structural g 85.79
2nt2_A145 Protein phosphatase slingshot homolog 2; alpha/bet 85.38
2e0t_A151 Dual specificity phosphatase 26; conserved hypothe 83.49
2r0b_A154 Serine/threonine/tyrosine-interacting protein; str 83.07
2img_A151 Dual specificity protein phosphatase 23; DUSP23, V 82.65
1yz4_A160 DUSP15, dual specificity phosphatase-like 15 isofo 81.52
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Back     alignment and structure
Probab=99.91  E-value=9.8e-25  Score=188.86  Aligned_cols=128  Identities=75%  Similarity=1.233  Sum_probs=103.8

Q ss_pred             CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870          136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF  215 (417)
Q Consensus       136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s  215 (417)
                      ++.|+++++.++++++++.+|||||++.||+..||+.+++..++++|||+.+..++.|.+++...+..+++++|||||++
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~s   83 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKF   83 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSS
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCC
Confidence            46899999999996456899999999999997787732222238999998753333466666533223678999999999


Q ss_pred             CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCCCCccc
Q 014870          216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGL  263 (417)
Q Consensus       216 G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~k~~~~  263 (417)
                      |.||..|++.|+++||++||+|.|||++..+|+++|+|++.+.+.+..
T Consensus        84 G~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~~~~~~  131 (134)
T 1vee_A           84 DGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTSGP  131 (134)
T ss_dssp             STTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEECCCCCCCC
T ss_pred             CCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCCCCCCCCC
Confidence            999999999999999999999999997767899999999998876654
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A Back     alignment and structure
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Back     alignment and structure
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Back     alignment and structure
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Back     alignment and structure
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Back     alignment and structure
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Back     alignment and structure
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Back     alignment and structure
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Back     alignment and structure
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Back     alignment and structure
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Back     alignment and structure
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Back     alignment and structure
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Back     alignment and structure
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Back     alignment and structure
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Back     alignment and structure
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Back     alignment and structure
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Back     alignment and structure
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Back     alignment and structure
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Back     alignment and structure
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Back     alignment and structure
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Back     alignment and structure
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Back     alignment and structure
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Back     alignment and structure
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Back     alignment and structure
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Back     alignment and structure
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Back     alignment and structure
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Back     alignment and structure
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Back     alignment and structure
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Back     alignment and structure
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Back     alignment and structure
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Back     alignment and structure
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Back     alignment and structure
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Back     alignment and structure
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Back     alignment and structure
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Back     alignment and structure
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Back     alignment and structure
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Back     alignment and structure
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Back     alignment and structure
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Back     alignment and structure
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Back     alignment and structure
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3 Back     alignment and structure
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Back     alignment and structure
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Back     alignment and structure
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Back     alignment and structure
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Back     alignment and structure
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3 Back     alignment and structure
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Back     alignment and structure
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum} Back     alignment and structure
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Back     alignment and structure
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A Back     alignment and structure
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A Back     alignment and structure
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A* Back     alignment and structure
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} Back     alignment and structure
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} Back     alignment and structure
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens} Back     alignment and structure
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} Back     alignment and structure
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} Back     alignment and structure
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d1qxna_137 c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf 7e-08
d1tq1a_119 c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc 3e-04
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL 199
           S ++AY  L ++    L+D+R P E + +G PDV+         +     K G       
Sbjct: 26  SPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGL------ 79

Query: 200 KFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258
                    + +  K    + L  + +   GFK  Y  + G +    W+  GLP +   
Sbjct: 80  ----DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK---WLEEGLPSLDRS 131
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d1qxna_137 Polysulfide-sulfur transferase (sulfide dehydrogen 99.85
d1yt8a1136 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.84
d1tq1a_119 Thiosulfate sulfurtransferase/Senescence-associate 99.84
d1gmxa_108 Sulfurtransferase GlpE {Escherichia coli [TaxId: 5 99.81
d1yt8a2101 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.78
d1yt8a3157 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.78
d1yt8a4130 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.76
d1t3ka_132 Dual specificity phosphatase Cdc25 {Thale cress (A 99.74
d1e0ca2136 Sulfurtransferase {Azotobacter vinelandii [TaxId: 99.7
d1e0ca1135 Sulfurtransferase {Azotobacter vinelandii [TaxId: 99.65
d1uara2141 Sulfurtransferase {Thermus thermophilus [TaxId: 27 99.6
d1urha2120 3-mercaptopyruvate sulfurtransferase {Escherichia 99.59
d1uara1143 Sulfurtransferase {Thermus thermophilus [TaxId: 27 99.58
d1rhsa2144 Rhodanese {Cow (Bos taurus) [TaxId: 9913]} 99.57
d1urha1147 3-mercaptopyruvate sulfurtransferase {Escherichia 99.55
d1rhsa1149 Rhodanese {Cow (Bos taurus) [TaxId: 9913]} 99.5
d1c25a_161 CDC25a {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1ymka1174 CDC25b {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1okga2139 3-mercaptopyruvate sulfurtransferase {Leishmania m 99.39
d2gwfa1135 Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum 99.31
d1okga1156 3-mercaptopyruvate sulfurtransferase {Leishmania m 99.26
d1hzma_154 Erk2 binding domain of Mapk phosphatase mkp-3 {Hum 98.99
d1xria_151 Putative phosphatase At1g05000 {Thale cress (Arabi 90.01
d1jl3a_137 Arsenate reductase ArsC {Bacillus subtilis [TaxId: 80.43
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.85  E-value=8.8e-22  Score=170.49  Aligned_cols=110  Identities=25%  Similarity=0.404  Sum_probs=91.7

Q ss_pred             CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870          136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF  215 (417)
Q Consensus       136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s  215 (417)
                      ...||++++.+++.++++++|||||++.||+..|+|.+    +|++|+|+..+     ...+. ....+++++|||||++
T Consensus        22 ~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i----~~a~~ip~~~l-----~~~~~-~~~~~~~~~ivvyC~~   91 (137)
T d1qxna_          22 MVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDV----KNYKHMSRGKL-----EPLLA-KSGLDPEKPVVVFCKT   91 (137)
T ss_dssp             SEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECC----SSEEECCTTTS-----HHHHH-HHCCCTTSCEEEECCS
T ss_pred             CCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccc----cccccCCcccc-----ccccc-ccccCcccceeeeecc
Confidence            45899999999997578899999999999998665432    27999997632     22232 2234789999999999


Q ss_pred             CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCC
Q 014870          216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK  258 (417)
Q Consensus       216 G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~  258 (417)
                      |.||..+++.|+++||+|||+|+|||   .+|+++|+|++...
T Consensus        92 G~rs~~aa~~L~~~G~~nV~~l~GG~---~~W~~~g~P~~~~~  131 (137)
T d1qxna_          92 AARAALAGKTLREYGFKTIYNSEGGM---DKWLEEGLPSLDRS  131 (137)
T ss_dssp             SSCHHHHHHHHHHHTCSCEEEESSCH---HHHHHTTCCEECCC
T ss_pred             cchHHHHHHHHHHcCCCcEEEecCHH---HHHHHcCCCCCCCC
Confidence            99999999999999999999999999   99999999998653
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure