Citrus Sinensis ID: 014877

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHcccHHHHHHccHHHHHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccHHHHHHHcccccccEEEEHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
cHHHHHHHccHHHHccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHcccccEccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcc
MAAEMALVkpiskfstiatttkprfsypkatctslstrfctiKMSATSEQAAAAtaqkpskksnktaiketlltprfyttdfDEMETLFNTEINKKLNQAEFEALLQEFKtdynqthfvRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKarkytffkpkFIFYATYLSEKIGYWRYITIYRHlkanpefqcypifkyfenwcqdenrhGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQrtafyegigldtkefDMHVIIETnrttarifpavldvenpeFKRRLDRMVEINERLLavgatddiplvknlkrIPLIAALASELLAtylmppvdsgsvdfaefepelvy
maaemalvkpiskfstiatttkprfsypkatctsLSTRFCTIKMSATSEQAAaataqkpskksnktaiketlltprfyttdFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETnrttarifpavldvenpefKRRLDRMVEINERLlavgatddiplvkNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIkmsatseqaaaataqkpskksNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY
**********ISKFSTIATTTKPRFSYPKATCTSLSTRFCTIK*************************KETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVD***************
*******VKPISKFS********************************************************LLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINER*************KNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELV*
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSA*******************TAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY
*****A*VK**SKFSTIATTTK*RF********S*STRFCTIKMSATS****************KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q945B7405 Magnesium-protoporphyrin N/A no 0.973 1.0 0.870 0.0
Q6SJV8405 Magnesium-protoporphyrin N/A no 0.973 1.0 0.872 0.0
Q9M591409 Magnesium-protoporphyrin yes no 0.980 0.997 0.836 0.0
Q5EFU4417 Magnesium-protoporphyrin N/A no 0.992 0.990 0.786 0.0
Q9AR22407 Magnesium-protoporphyrin N/A no 0.915 0.936 0.648 1e-151
Q9LD46407 Magnesium-protoporphyrin N/A no 0.887 0.906 0.619 1e-135
Q8YRZ2358 Magnesium-protoporphyrin yes no 0.814 0.946 0.636 1e-132
Q118B4358 Magnesium-protoporphyrin yes no 0.807 0.938 0.621 1e-129
P72584358 Magnesium-protoporphyrin N/A no 0.819 0.952 0.62 1e-127
Q1XDK9349 Magnesium-protoporphyrin N/A no 0.812 0.968 0.612 1e-126
>sp|Q945B7|CRD1_EUPES Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1 Back     alignment and function desciption
 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/416 (87%), Positives = 378/416 (90%), Gaps = 11/416 (2%)

Query: 1   MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPS 60
           MAAEMALVKPI+          P+F  P  T +S S    TIKMSATS+     TA KPS
Sbjct: 1   MAAEMALVKPIT----------PKFINPMRTFSSSSKF-STIKMSATSQSNTTTTATKPS 49

Query: 61  KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVR 120
           KK NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVR
Sbjct: 50  KKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVR 109

Query: 121 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 180
           NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR
Sbjct: 110 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 169

Query: 181 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 240
           DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH
Sbjct: 170 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 229

Query: 241 LKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT 300
           LK NPE+QCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT
Sbjct: 230 LKENPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT 289

Query: 301 MYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEIN 360
           MYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKR+LDRMV IN
Sbjct: 290 MYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVIN 349

Query: 361 ERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 416
           ++L AVG T+D  +VKNLKR+PLIAAL SE+LA YLMPP++SGSVDFAEFEP+LVY
Sbjct: 350 QKLQAVGETEDNSVVKNLKRVPLIAALVSEILAAYLMPPIESGSVDFAEFEPKLVY 405
Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME).
Euphorbia esula (taxid: 3993)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 8EC: 1
>sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q9M591|CRD1_ARATH Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q5EFU4|CRD1_HORVU Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR22|CTH1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LD46|CRD1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1 Back     alignment and function description
>sp|Q8YRZ2|ACSF3_NOSS1 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=acsF3 PE=3 SV=1 Back     alignment and function description
>sp|Q118B4|ACSF_TRIEI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1 Back     alignment and function description
>sp|P72584|ACSF1_SYNY3 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsF1 PE=3 SV=1 Back     alignment and function description
>sp|Q1XDK9|ACSF_PORYE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Porphyra yezoensis GN=acsF PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2080560409 CRD1 "COPPER RESPONSE DEFECT 1 0.980 0.997 0.812 1.3e-180
TAIR|locus:2080560 CRD1 "COPPER RESPONSE DEFECT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1753 (622.1 bits), Expect = 1.3e-180, P = 1.3e-180
 Identities = 339/417 (81%), Positives = 359/417 (86%)

Query:     1 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXX-XXXXXX 59
             MAAEMALVKPISKFS+      P+ S P    +    RF T+                  
Sbjct:     1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSK 52

Query:    60 XXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
                  K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFV
Sbjct:    53 SKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFV 112

Query:   120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
             RNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS
Sbjct:   113 RNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 172

Query:   180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
             RDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   173 RDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 232

Query:   240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV 299
             HLK NPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDW+AKLW+RFFCLSVYV
Sbjct:   233 HLKENPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWQAKLWSRFFCLSVYV 292

Query:   300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEI 359
             TMYLNDCQRT FYEGIGL+TKEFDMHVIIETNRTTARIFPAVLDVENPEFKR+LDRMV  
Sbjct:   293 TMYLNDCQRTNFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVS 352

Query:   360 NERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 416
              E+LLA+G TDD   +K LKRIPL+ +LASE+LA YLMPPV+SGSVDFAEFEP LVY
Sbjct:   353 YEKLLAIGETDDASFIKTLKRIPLVTSLASEILAAYLMPPVESGSVDFAEFEPNLVY 409


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      416       395   0.00096  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  251 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.13u 0.11s 33.24t   Elapsed:  00:00:01
  Total cpu time:  33.13u 0.11s 33.24t   Elapsed:  00:00:01
  Start:  Tue May 21 00:01:15 2013   End:  Tue May 21 00:01:16 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015979 "photosynthesis" evidence=IEA
GO:0015995 "chlorophyll biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0048529 "magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity" evidence=IEA;NAS;IMP
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003677 "DNA binding" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2ISZ6ACSF_RHOP21, ., 1, 4, ., 1, 3, ., 8, 10.45120.83170.9479yesno
Q1XDK9ACSF_PORYE1, ., 1, 4, ., 1, 3, ., 8, 10.61220.81250.9684N/Ano
A3PD22ACSF_PROM01, ., 1, 4, ., 1, 3, ., 8, 10.50130.78840.8410yesno
A5GKR3ACSF_SYNPW1, ., 1, 4, ., 1, 3, ., 8, 10.56110.84130.9722yesno
Q6SJV8CRD1_GOSHI1, ., 1, 4, ., 1, 3, ., 8, 10.87250.97351.0N/Ano
Q0IAL0ACSF_SYNS31, ., 1, 4, ., 1, 3, ., 8, 10.57870.82690.9555yesno
P72584ACSF1_SYNY31, ., 1, 4, ., 1, 3, ., 8, 10.620.81970.9525N/Ano
Q9M591CRD1_ARATH1, ., 1, 4, ., 1, 3, ., 8, 10.83690.98070.9975yesno
Q7V1M1ACSF_PROMP1, ., 1, 4, ., 1, 3, ., 8, 10.47600.85330.9102yesno
Q8YRZ2ACSF3_NOSS11, ., 1, 4, ., 1, 3, ., 8, 10.63660.81490.9469yesno
Q6B8U1ACSF_GRATL1, ., 1, 4, ., 1, 3, ., 8, 10.60690.81970.9770N/Ano
Q7NFA1ACSF_GLOVI1, ., 1, 4, ., 1, 3, ., 8, 10.52170.80280.9653yesno
Q3AK18ACSF_SYNSC1, ., 1, 4, ., 1, 3, ., 8, 10.58570.80040.9353yesno
Q132P2ACSF_RHOPS1, ., 1, 4, ., 1, 3, ., 8, 10.44780.81250.9209yesno
Q118B4ACSF_TRIEI1, ., 1, 4, ., 1, 3, ., 8, 10.62170.80760.9385yesno
Q31AS9ACSF_PROM91, ., 1, 4, ., 1, 3, ., 8, 10.51230.78840.8410yesno
Q9LD46CRD1_CHLRE1, ., 1, 4, ., 1, 3, ., 8, 10.61990.88700.9066N/Ano
Q945B7CRD1_EUPES1, ., 1, 4, ., 1, 3, ., 8, 10.87010.97351.0N/Ano
Q5MZZ2ACSF_SYNP61, ., 1, 4, ., 1, 3, ., 8, 10.56810.82450.9581yesno
A5GU20ACSF_SYNR31, ., 1, 4, ., 1, 3, ., 8, 10.55110.83410.9638yesno
Q5EFU4CRD1_HORVU1, ., 1, 4, ., 1, 3, ., 8, 10.78600.99270.9904N/Ano
Q9AR22CTH1_CHLRE1, ., 1, 4, ., 1, 3, ., 8, 10.64850.91580.9361N/Ano
P0DJN9ACSF_RUBGE1, ., 1, 4, ., 1, 3, ., 8, 10.41020.80760.9385yesno
I0HUK7ACSF_RUBGI1, ., 1, 4, ., 1, 3, ., 8, 10.41880.80760.9385yesno
Q8DJ05ACSF1_THEEB1, ., 1, 4, ., 1, 3, ., 8, 10.54740.79800.8736yesno
A2BR98ACSF_PROMS1, ., 1, 4, ., 1, 3, ., 8, 10.50130.78840.8410yesno
A2BWG6ACSF_PROM51, ., 1, 4, ., 1, 3, ., 8, 10.47350.85330.9102yesno
Q7U6Y8ACSF_SYNPX1, ., 1, 4, ., 1, 3, ., 8, 10.55670.84370.9859yesno
Q31LY2ACSF_SYNE71, ., 1, 4, ., 1, 3, ., 8, 10.56810.82450.9581yesno
A8G4Z1ACSF_PROM21, ., 1, 4, ., 1, 3, ., 8, 10.50810.79320.8461yesno
P74134ACSF2_SYNY31, ., 1, 4, ., 1, 3, ., 8, 10.51770.80040.9301N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.13.810.994
3rd Layer1.14.130.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023347001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (402 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018037001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (328 aa)
• •• •• 0.992
CHLH
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)
• ••  • 0.941
GSVIVG00027634001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (396 aa)
   • •• 0.930
GSVIVG00025838001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (399 aa)
   • •• 0.930
GSVIVG00038863001
SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa)
• ••  • 0.872
GSVIVG00002992001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)
• ••  • 0.780
GSVIVG00016328001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)
• ••  • 0.770
GSVIVG00001938001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (229 aa)
•  •  • 0.696
GSVIVG00022232001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (747 aa)
  ••  • 0.686
GSVIVG00017359001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)
• ••  • 0.681

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
PLN02508357 PLN02508, PLN02508, magnesium-protoporphyrin IX mo 0.0
cd01047323 cd01047, ACSF, Aerobic Cyclase System Fe-containin 0.0
PRK13654355 PRK13654, PRK13654, magnesium-protoporphyrin IX mo 0.0
TIGR02029337 TIGR02029, AcsF, magnesium-protoporphyrin IX monom 0.0
CHL00185351 CHL00185, ycf59, magnesium-protoporphyrin IX monom 0.0
pfam02915137 pfam02915, Rubrerythrin, Rubrerythrin 7e-39
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 3e-06
>gnl|CDD|178124 PLN02508, PLN02508, magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
 Score =  729 bits (1884), Expect = 0.0
 Identities = 313/357 (87%), Positives = 337/357 (94%)

Query: 60  SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
            +K  K AIKETLLTPRFYTTDFDEME LFNTEINK L+ AEFEALLQEFKTDYNQTHFV
Sbjct: 1   MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFV 60

Query: 120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
           RN+EFK AADK+QGPLRQIF+EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIF+LMS
Sbjct: 61  RNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMS 120

Query: 180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
           RDEARHAGFLNK LSDFN ALDLGFLTK RKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct: 121 RDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYITIYR 180

Query: 240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV 299
           HL+ANP++Q YPIFKYFENWCQDENRHGDFFSAL+KAQPQFLNDWKAKLW+RFFCLSVYV
Sbjct: 181 HLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV 240

Query: 300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEI 359
           TMYLND QRTAFYEGIGL+TK+F+MHVIIETNRTTARIFPAVLDVENPEFKR+LDRMV I
Sbjct: 241 TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVI 300

Query: 360 NERLLAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 416
           N++L+A+G ++D   VKNLKRIPLIA LASE+LA YLMPPV+SGSVDFAEFEP+LVY
Sbjct: 301 NQKLVAIGESNDPSFVKNLKRIPLIARLASEILAAYLMPPVESGSVDFAEFEPQLVY 357

Length = 357
>gnl|CDD|153106 cd01047, ACSF, Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|237458 PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|131084 TIGR02029, AcsF, magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>gnl|CDD|177087 CHL00185, ycf59, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|217284 pfam02915, Rubrerythrin, Rubrerythrin Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 100.0
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 100.0
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 100.0
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 100.0
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 100.0
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 99.67
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.76
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 96.75
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 96.2
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 95.91
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 95.62
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 95.16
cd07908154 Mn_catalase_like Manganese catalase-like protein, 95.13
PF13668137 Ferritin_2: Ferritin-like domain 94.93
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 94.7
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 94.34
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 93.65
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 93.57
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 93.24
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 92.91
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 92.15
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 91.08
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 90.67
PRK10635158 bacterioferritin; Provisional 90.36
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 90.12
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 89.87
PLN02492324 ribonucleoside-diphosphate reductase 89.42
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 88.85
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 88.63
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 88.55
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 88.34
COG1633176 Uncharacterized conserved protein [Function unknow 87.62
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 86.53
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 85.58
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 84.74
cd07908154 Mn_catalase_like Manganese catalase-like protein, 84.29
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 83.89
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 83.79
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 82.4
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 82.31
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 81.45
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 81.1
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
Probab=100.00  E-value=3e-194  Score=1402.32  Aligned_cols=357  Identities=88%  Similarity=1.394  Sum_probs=355.0

Q ss_pred             CccchhhhhhhccCCCCccccChHHHhhccccccCccccHHHHHHHHHHHhhccCCCCcccCchhHHHhhcCChHHHHHH
Q 014877           60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF  139 (416)
Q Consensus        60 ~~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~eid~s~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~F  139 (416)
                      +++++|+|++||||||||||||||+|++|||++||+|++|+||+||++|||+||||+|||||+||+++|++|||++|++|
T Consensus         1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F   80 (357)
T PLN02508          1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF   80 (357)
T ss_pred             CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhh
Q 014877          140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI  219 (416)
Q Consensus       140 idFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfI  219 (416)
                      |||||||||||||||||||||+||+|++||+|+|||++||||||||||||||||+||||+||||||||+|+||||+||||
T Consensus        81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI  160 (357)
T PLN02508         81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI  160 (357)
T ss_pred             HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHHH
Q 014877          220 FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV  299 (416)
Q Consensus       220 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfa  299 (416)
                      |||||||||||||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+|||||||||||||+
T Consensus       161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa  240 (357)
T PLN02508        161 FYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV  240 (357)
T ss_pred             ehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHHhhcCCChhhHhhhh
Q 014877          300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLK  379 (416)
Q Consensus       300 TMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~~~~~~~~~~~~~l~  379 (416)
                      |||||||||++||++|||||++||++||++||+||+||||+|||||||+|+++||+|+++|++|.+++++++|+++|.|+
T Consensus       241 TMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~~~~~~~~~~~~~~l~  320 (357)
T PLN02508        241 TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKLVAIGESNDPSFVKNLK  320 (357)
T ss_pred             HheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCccCCCccccccCCccCC
Q 014877          380 RIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY  416 (416)
Q Consensus       380 kl~~~~~~~~~~lrLyl~p~~~~~~~~~~~~~~~~~y  416 (416)
                      |+|+++++|++++|||+|||+++++++....+||+||
T Consensus       321 k~~~~~~~~~~~~~lyl~~~~~~~~~~~~~~~p~~~~  357 (357)
T PLN02508        321 RIPLIARLASEILAAYLMPPVESGSVDFAEFEPQLVY  357 (357)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCCccccccCccccC
Confidence            9999999999999999999999999999999999998

>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 62/390 (15%), Positives = 110/390 (28%), Gaps = 137/390 (35%)

Query: 90  NTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTA 149
           + E  +   Q +++ +L  F+       FV N + K+  D  +  L +  ++ +  S  A
Sbjct: 8   DFETGEH--QYQYKDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 150 EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKAR 209
                 L+  L   L K   +V +              F+ + L   NY     FL    
Sbjct: 61  VSGTLRLFWTL---LSKQEEMVQK--------------FVEEVLRI-NY----KFLMSPI 98

Query: 210 KYTFFKPKFIFYATYLSE------------KIGYWR---YITIYRHLK------------ 242
           K    +P  +    Y+ +            K    R   Y+ + + L             
Sbjct: 99  KTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 243 --------------ANPEFQCYPIFKYFENW-----CQDENRHGDFFSAL---------- 273
                          + + QC   FK F  W     C       +    L          
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 274 ----MKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLD-------TKEF 322
                      ++  +A+L  R      Y    L           + L           F
Sbjct: 216 RSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLL-----------V-LLNVQNAKAWNAF 262

Query: 323 DMH--VIIETNRTTARIFPAVLDVENPEFKRRLDRMVEIN--------ERLLA--VG-AT 369
           ++   +++    TT R F  V D  +      +  +   +        + LL   +    
Sbjct: 263 NLSCKILL----TT-R-FKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 370 DDIPLVKNLKRIPL----IAALASELLATY 395
            D+P    L   P     IA    + LAT+
Sbjct: 316 QDLPREV-LTTNPRRLSIIAESIRDGLATW 344
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.56
2fzf_A175 Hypothetical protein; structural genomics, southea 96.43
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 96.23
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 96.15
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 95.36
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 95.02
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 95.02
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 94.71
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 93.89
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 93.86
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 93.64
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 92.53
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 91.2
1zpy_A95 Hypothetical protein NE0167; structural genomics, 91.12
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 90.24
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 90.02
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 89.96
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 89.87
2e0z_A345 Virus-like particle; bacteriophage, HK97; 3.60A {P 89.61
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 89.42
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 89.35
2vxx_A192 Starvation induced DNA binding protein; stress res 89.33
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 89.11
2c41_A158 DPS family DNA-binding stress response protein; ir 88.69
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 88.52
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 88.11
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 88.04
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 88.02
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 87.29
4etr_A153 Putative uncharacterized protein; DUF2383, domain 87.14
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 87.0
3pf7_A481 Benzoyl-COA oxygenase component B; DIIRON center, 86.97
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 86.95
3k6c_A95 Uncharacterized protein NE0167; structural genomic 86.56
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 85.97
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 85.9
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 85.3
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 85.28
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 84.88
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 84.72
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 84.63
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 83.63
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 83.45
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 83.24
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 83.07
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 82.16
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 80.04
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
Probab=96.56  E-value=0.0039  Score=50.40  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhhhhccccchhhHHHHhhhhcccC-ccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccc
Q 014877          135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTF  213 (416)
Q Consensus       135 ~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~N-P~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTf  213 (416)
                      .++..++-|..-...|+.+...|.-+...+++.+ |.+++.|.-.+.+|..||.-|-+-+.+.|-..+++ +.+-.  ..
T Consensus         7 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~-~~~~~--~~   83 (149)
T 2qqy_A            7 DVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTI-PLRVK--QA   83 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-CCCCC--CC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC-CCCCC--CC
Confidence            4567899999999999999999999999996544 66999999999999999999999888888655542 21111  12


Q ss_pred             ccchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccch
Q 014877          214 FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFL  281 (416)
Q Consensus       214 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll  281 (416)
                      ..++=++=...=.|+-.-..|=.+...-++..+....   ++|+..-++|-+|-..|..++..-|..+
T Consensus        84 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~---~~l~~~~~eee~h~~~l~~~l~~~~~~~  148 (149)
T 2qqy_A           84 EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELV---VKLEDMIADETNHMEELDRLLNDKAMVL  148 (149)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            2344455555555665444444444444445555544   5555568899999999999988755544
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 97.65
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.43
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 97.02
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 96.99
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 96.11
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 95.99
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 95.96
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 95.91
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 95.79
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 95.7
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 95.41
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 95.04
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 94.99
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 92.55
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 92.53
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 90.68
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 88.8
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 87.36
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 85.66
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 85.48
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 85.33
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 83.65
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 82.58
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 81.23
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=97.65  E-value=7.2e-06  Score=65.60  Aligned_cols=125  Identities=11%  Similarity=0.110  Sum_probs=94.5

Q ss_pred             HHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchh
Q 014877          140 VEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF  218 (416)
Q Consensus       140 idFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~Pkf  218 (416)
                      ++=|.+....|++-...|--.+...++. .|.+++.|.-+|++|..||.-+-+.|.+.|....+.-.+...  +...++=
T Consensus         8 ~e~L~~a~~~E~~A~~~Yl~~A~~~~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~~~~--~~~~~~~   85 (135)
T d1yuza1           8 LENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPS--AYSCDLN   85 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CC--CCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCc--CCchhhh
Confidence            5668888899999999999999988765 699999999999999999999999999999988877665443  3333455


Q ss_pred             hhhhhhcccccchhhHHHHHHHhhhCC-CCcccchhhhhHhhhhhcccchhHH
Q 014877          219 IFYATYLSEKIGYWRYITIYRHLKANP-EFQCYPIFKYFENWCQDENRHGDFF  270 (416)
Q Consensus       219 IfYAtYLSEKIGYwRYItIyRHLe~~P-e~r~~PIFk~FE~WCqDEnRHGDfF  270 (416)
                      ++-+..-.|+    -+|.+|+.+-+.= +.....+.+||+.++.||..|++-|
T Consensus        86 L~~~~~~ee~----e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~E~~H~e~F  134 (135)
T d1yuza1          86 LISGANGEIY----ETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERY  134 (135)
T ss_dssp             HHHHHHHHHH----HHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5555544433    2455555443221 2345677899999999999999987
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure