Citrus Sinensis ID: 014878

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccEEEEEEEEEEEccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEEcccccccccccccccHHHHHccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcc
ccHHHHcccccccccccccccccccccccHHHccccccccccccccccccEEEcccccccHHHHHHHcHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccEcccEEEEEcccEEEEEEccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEccccccEEEEEEEccEEEEEEEEEEEccccHHHHHHHHHHcccEEcccccccccccccccccccEccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEcccccccEEEcccccccccEEEEEcccccHHHHcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcc
maecmrttlnppktplhsnkisapklsfsssfssfgtkpnssnsnnyprisLSVMSnknqnqnqnqnhhhhqqhLSLDAVISSNRKAELLGDIKGSLSNrlsetnlhltvpglksktrgkvrdiydggdYLVLVTTDRQSAFDRILasipfkgqvlnetslwwfdqtrhitpnavisspdknvtiakkcsvipvEFVVRGFvtgstdtslWTVYNKGIRnycgnalpdglvknqklpaniltpttkaedhdvpvtpdEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDtkyefgkssddsillidevhtpdssryWIAHSYEErfqsglepenvdKEFLRLWFKdhcnpyedevlpdapEELICELAWRYIFLYEAITksrfdvsstkepihdrISRNVSSALSALQ
maecmrttlnppktplhsnkISAPKLSFSSSFSSfgtkpnssnsnnYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSlsnrlsetnlhltvpglksktrgkvrdiydGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHItpnavisspdkNVTIAKKCSVIPVEFVvrgfvtgstdtslWTVYNKGIRNYCGNALPDGLVKNQKLPANILTpttkaedhdvpvTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEErfqsglepENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITksrfdvsstkepihdrisrnvssalsalq
MAECMRTTLNPPKTPLHSNKISAPKLsfsssfssfGTKPNSSNSNNYPRISLSVMSNKnqnqnqnqnhhhhqqhLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ
*********************************************************************************************************LHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPT******DVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRF*************************
********************************************************************************************IKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE**************EFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSAL*
MAECMRTTLNPPKTPLHSNKISAPKLSFSS*************SNNYPRISLSVMSNKN****************SLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRN*********
********************ISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNH******LSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
P38025411 Phosphoribosylaminoimidaz yes no 0.983 0.995 0.713 1e-175
Q07463341 Phosphoribosylaminoimidaz N/A no 0.723 0.882 0.795 1e-143
Q5WW20312 Phosphoribosylaminoimidaz yes no 0.740 0.987 0.607 1e-112
Q5X4M9312 Phosphoribosylaminoimidaz yes no 0.740 0.987 0.600 1e-111
Q9A3G2320 Putative phosphoribosylam yes no 0.730 0.95 0.503 1e-85
Q8UCE7316 Putative phosphoribosylam yes no 0.718 0.946 0.498 3e-82
Q98I23313 Putative phosphoribosylam yes no 0.716 0.952 0.470 4e-76
Q8A004314 Phosphoribosylaminoimidaz yes no 0.730 0.968 0.434 8e-66
Q64XV7314 Phosphoribosylaminoimidaz yes no 0.730 0.968 0.431 2e-65
Q5LH03314 Phosphoribosylaminoimidaz yes no 0.730 0.968 0.431 2e-65
>sp|P38025|PUR7_ARATH Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2 Back     alignment and function desciption
 Score =  614 bits (1583), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/416 (71%), Positives = 342/416 (82%), Gaps = 7/416 (1%)

Query: 1   MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQ 60
           MA+C+R+TLNP +TP    + +  K   S +F+S          N YP+    VMS + +
Sbjct: 1   MAQCVRSTLNPVRTPQSFTRKAYVK---SPAFASVSFLRAVPEFNKYPKPCSLVMSCQGK 57

Query: 61  NQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGK 120
            QNQ +     +  LSLD +++SNRK E+LG IK SLSN LSETNL  TVPGLKS+ +GK
Sbjct: 58  AQNQQE----ERPQLSLDDLVTSNRKGEVLGTIKDSLSNCLSETNLLATVPGLKSRIKGK 113

Query: 121 VRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPD 180
           VRDIYD GDYLVL+TTDR SAFDR LASIPFKGQVLNETSLWWF+ T+HITPNA++SSPD
Sbjct: 114 VRDIYDAGDYLVLITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPD 173

Query: 181 KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANI 240
           +NV IAKKCSV P+EFVVRG+VTGSTDTSLWTVYNKG+RNYCGN L DGLVKNQKLPANI
Sbjct: 174 RNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANI 233

Query: 241 LTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKY 300
           LTPTTKA DHDVP++P+EIV+ G MT+AEFDEAS KAL LFE+GQ VA +HGLILVDTKY
Sbjct: 234 LTPTTKAADHDVPISPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKY 293

Query: 301 EFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYE 360
           EFG+SSD SILLIDE+HTPDSSRYW+A SYEERFQ GLEPENVDKEFLRLWFK++CNPYE
Sbjct: 294 EFGRSSDGSILLIDEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENCNPYE 353

Query: 361 DEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ 416
           DEVLP AP EL+ ELAWRYIFLYE IT SR D+  T+EPIHDRISRN S ALS+L+
Sbjct: 354 DEVLPAAPAELVTELAWRYIFLYETITGSRIDIIPTQEPIHDRISRNTSQALSSLR 409

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 6
>sp|Q07463|PUR7_VIGAC Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PUR7 PE=2 SV=1 Back     alignment and function description
>sp|Q5WW20|PUR7_LEGPL Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Legionella pneumophila (strain Lens) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q5X4M9|PUR7_LEGPA Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Legionella pneumophila (strain Paris) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q9A3G2|PUR72_CAUCR Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=purC2 PE=3 SV=1 Back     alignment and function description
>sp|Q8UCE7|PUR72_AGRT5 Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=purC2 PE=3 SV=1 Back     alignment and function description
>sp|Q98I23|PUR72_RHILO Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Rhizobium loti (strain MAFF303099) GN=purC2 PE=3 SV=2 Back     alignment and function description
>sp|Q8A004|PUR7_BACTN Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q64XV7|PUR7_BACFR Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides fragilis (strain YCH46) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q5LH03|PUR7_BACFN Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=purC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
297835076411 hypothetical protein ARALYDRAFT_898545 [ 0.983 0.995 0.718 1e-173
15232462411 phosphoribosylaminoimidazole-succinocarb 0.983 0.995 0.713 1e-173
453384411 SAICAR synthetase [Arabidopsis thaliana] 0.983 0.995 0.709 1e-171
225459162388 PREDICTED: phosphoribosylaminoimidazole- 0.814 0.873 0.825 1e-171
37983622399 SAICAR synthetase [Nicotiana tabacum] 0.935 0.974 0.727 1e-171
357489863399 Phosphoribosylaminoimidazole-succinocarb 0.947 0.987 0.700 1e-169
449469821404 PREDICTED: phosphoribosylaminoimidazole- 0.961 0.990 0.714 1e-167
19347902374 putative phosphoribosyamidoimidazole-suc 0.884 0.983 0.760 1e-167
449515490366 PREDICTED: phosphoribosylaminoimidazole- 0.838 0.953 0.794 1e-167
356552941410 PREDICTED: phosphoribosylaminoimidazole- 0.949 0.963 0.692 1e-164
>gi|297835076|ref|XP_002885420.1| hypothetical protein ARALYDRAFT_898545 [Arabidopsis lyrata subsp. lyrata] gi|297331260|gb|EFH61679.1| hypothetical protein ARALYDRAFT_898545 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/416 (71%), Positives = 341/416 (81%), Gaps = 7/416 (1%)

Query: 1   MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQ 60
           MA+C+R+TLNP +TP    K    K    +S S   T P       YP+    VMS + +
Sbjct: 1   MAQCVRSTLNPLRTPHSVTKRVTVKNPAFASVSFLRTLPEF---KKYPKPCSLVMSCQGK 57

Query: 61  NQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGK 120
            QNQ +     +  LSLD +++SNRK E+LG IKGSLSN LSETNL  TVPGLKS+ +GK
Sbjct: 58  VQNQQE----ERPQLSLDDLVTSNRKGEVLGTIKGSLSNCLSETNLLATVPGLKSRIKGK 113

Query: 121 VRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPD 180
           VRDIYD GDYL+L+TTDR SAFDR LASIPFKGQVLNETSLWWF+ T+HITPNA++SSPD
Sbjct: 114 VRDIYDAGDYLILITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPD 173

Query: 181 KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANI 240
           +NV IAKKCSV P+EFVVRG+VTGSTDTSLWTVYNKG+RNYCGN L DGLVKNQKLPANI
Sbjct: 174 RNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANI 233

Query: 241 LTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKY 300
           LTPTTKA DHDVP++P+EIV+ G MT+AEFDEAS KAL LFE+GQRVA EHGLILVDTKY
Sbjct: 234 LTPTTKAADHDVPISPNEIVERGFMTQAEFDEASMKALSLFEFGQRVAKEHGLILVDTKY 293

Query: 301 EFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYE 360
           EFG+SSD SILLIDE+HTPDSSRYW+A SYEERFQ GLEPENVDKEFLRLWFK++ NPYE
Sbjct: 294 EFGRSSDGSILLIDEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENSNPYE 353

Query: 361 DEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ 416
           DEVLP AP EL+ ELAWRYIFLYE IT SR D+  T+EPIHDRISRN S ALS+L+
Sbjct: 354 DEVLPAAPAELVTELAWRYIFLYETITGSRIDIIPTQEPIHDRISRNTSQALSSLR 409

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15232462|ref|NP_188748.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|79313319|ref|NP_001030739.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|26454658|sp|P38025.2|PUR7_ARATH RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic; AltName: Full=SAICAR synthetase; Flags: Precursor gi|11994271|dbj|BAB01454.1| 5'-phosphoribosyl-4-(N-succinocarboxamide)-5- ami noimidazole synthetase [Arabidopsis thaliana] gi|27754219|gb|AAO22563.1| putative phosphoribosyamidoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|332642941|gb|AEE76462.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|332642942|gb|AEE76463.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|453384|gb|AAA16231.1| SAICAR synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225459162|ref|XP_002285714.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Vitis vinifera] gi|302142022|emb|CBI19225.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|37983622|gb|AAR06292.1| SAICAR synthetase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357489863|ref|XP_003615219.1| Phosphoribosylaminoimidazole-succinocarboxamide synthase [Medicago truncatula] gi|355516554|gb|AES98177.1| Phosphoribosylaminoimidazole-succinocarboxamide synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449469821|ref|XP_004152617.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|19347902|gb|AAL85973.1| putative phosphoribosyamidoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449515490|ref|XP_004164782.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356552941|ref|XP_003544818.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2092975411 PUR7 "purin 7" [Arabidopsis th 0.983 0.995 0.701 1.1e-153
TIGR_CMR|GSU_2091296 GSU_2091 "phosphoribosylaminoi 0.639 0.898 0.374 7.8e-39
POMBASE|SPBC409.10299 ade7 "phosphoribosylamidoimida 0.649 0.903 0.345 4.4e-36
SGD|S000000070306 ADE1 "N-succinyl-5-aminoimidaz 0.475 0.647 0.339 5e-35
UNIPROTKB|P0A5T4297 purC "Phosphoribosylaminoimida 0.632 0.885 0.354 1.7e-34
CGD|CAL0005704291 ADE1 [Candida albicans (taxid: 0.653 0.934 0.344 2e-33
UNIPROTKB|Q5AAK5291 ADE1 "Phosphoribosylaminoimida 0.653 0.934 0.344 2e-33
UNIPROTKB|G4NKV5310 MGG_12537 "Phosphoribosylamino 0.600 0.806 0.354 4.7e-32
UNIPROTKB|Q2KF88 1410 MGCH7_ch7g798 "Putative unchar 0.600 0.177 0.354 1.3e-30
TIGR_CMR|DET_0841304 DET_0841 "phosphoribosylaminoi 0.531 0.726 0.370 3.8e-30
TAIR|locus:2092975 PUR7 "purin 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 292/416 (70%), Positives = 332/416 (79%)

Query:     1 MAECMRTTLNPPKTPLHSNKISAPKLXXXXXXXXXGTKPNSSNSNNYPRISLSVMSNKXX 60
             MA+C+R+TLNP +TP    + +  K             P     N YP+    VMS +  
Sbjct:     1 MAQCVRSTLNPVRTPQSFTRKAYVKSPAFASVSFLRAVPEF---NKYPKPCSLVMSCQGK 57

Query:    61 XXXXXXXXXXXXXXLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGK 120
                           LSLD +++SNRK E+LG IK SLSN LSETNL  TVPGLKS+ +GK
Sbjct:    58 AQNQQEERPQ----LSLDDLVTSNRKGEVLGTIKDSLSNCLSETNLLATVPGLKSRIKGK 113

Query:   121 VRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPD 180
             VRDIYD GDYLVL+TTDR SAFDR LASIPFKGQVLNETSLWWF+ T+HITPNA++SSPD
Sbjct:   114 VRDIYDAGDYLVLITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPD 173

Query:   181 KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANI 240
             +NV IAKKCSV P+EFVVRG+VTGSTDTSLWTVYNKG+RNYCGN L DGLVKNQKLPANI
Sbjct:   174 RNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANI 233

Query:   241 LTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKY 300
             LTPTTKA DHDVP++P+EIV+ G MT+AEFDEAS KAL LFE+GQ VA +HGLILVDTKY
Sbjct:   234 LTPTTKAADHDVPISPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKY 293

Query:   301 EFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYE 360
             EFG+SSD SILLIDE+HTPDSSRYW+A SYEERFQ GLEPENVDKEFLRLWFK++CNPYE
Sbjct:   294 EFGRSSDGSILLIDEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENCNPYE 353

Query:   361 DEVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNVSSALSALQ 416
             DEVLP AP EL+ ELAWRYIFLYE IT SR D+  T+EPIHDRISRN S ALS+L+
Sbjct:   354 DEVLPAAPAELVTELAWRYIFLYETITGSRIDIIPTQEPIHDRISRNTSQALSSLR 409
GO:0004639 "phosphoribosylaminoimidazolesuccinocarboxamide synthase activity" evidence=IEA;IGI;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016874 "ligase activity" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=IDA
TIGR_CMR|GSU_2091 GSU_2091 "phosphoribosylaminoimidazole-succinocarboxamide synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
POMBASE|SPBC409.10 ade7 "phosphoribosylamidoimidazolesuccinocarboxamide synthase, SAICAR synthetase, Ade7" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000000070 ADE1 "N-succinyl-5-aminoimidazole-4-carboxamide ribotide (SAICAR) synthetas" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5T4 purC "Phosphoribosylaminoimidazole-succinocarboxamide synthase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
CGD|CAL0005704 ADE1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AAK5 ADE1 "Phosphoribosylaminoimidazole-succinocarboxamide synthase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|G4NKV5 MGG_12537 "Phosphoribosylaminoimidazole-succinocarboxamide synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KF88 MGCH7_ch7g798 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0841 DET_0841 "phosphoribosylaminoimidazole-succinocarboxamide synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5WW20PUR7_LEGPL6, ., 3, ., 2, ., 60.60700.74030.9871yesno
Q07463PUR7_VIGAC6, ., 3, ., 2, ., 60.79530.72350.8826N/Ano
Q5X4M9PUR7_LEGPA6, ., 3, ., 2, ., 60.60060.74030.9871yesno
Q9A3G2PUR72_CAUCR6, ., 3, ., 2, ., 60.50320.73070.95yesno
P38025PUR7_ARATH6, ., 3, ., 2, ., 60.71390.98310.9951yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.60.979
3rd Layer6.3.20.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_302515.1
annotation not avaliable (411 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.1__1041__AT1G09830.1
annotation not avaliable (530 aa)
•• • •• 0.990
fgenesh1_pm.C_scaffold_4001534
annotation not avaliable (645 aa)
•  • •• 0.933
fgenesh1_pm.C_scaffold_5001575
annotation not avaliable (388 aa)
•  •  • 0.899
fgenesh2_kg.4__1530__AT2G35040.1
annotation not avaliable (598 aa)
•  •  • 0.898
scaffold_700081.1
annotation not avaliable (533 aa)
•  • •• 0.841
scaffold_200152.1
annotation not avaliable (534 aa)
•  •  • 0.841
fgenesh2_kg.3__3245__AT2G16570.1
annotation not avaliable (563 aa)
•  • •• 0.841
fgenesh2_kg.5__2202__AT3G57610.1
annotation not avaliable (490 aa)
•  •  • 0.832
fgenesh2_kg.1__3566__AT1G31220.1
annotation not avaliable (292 aa)
•    •• 0.816
fgenesh2_kg.2__1314__AT1G31220.1
annotation not avaliable (295 aa)
•    •• 0.788

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
PLN02544370 PLN02544, PLN02544, phosphoribosylaminoimidazole-s 0.0
PRK12607313 PRK12607, PRK12607, phosphoribosylaminoimidazole-s 1e-162
cd01414279 cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimida 1e-126
PRK13961296 PRK13961, PRK13961, phosphoribosylaminoimidazole-s 5e-82
pfam01259243 pfam01259, SAICAR_synt, SAICAR synthetase 1e-81
COG0152247 COG0152, PurC, Phosphoribosylaminoimidazolesuccino 3e-63
TIGR00081237 TIGR00081, purC, phosphoribosylaminoimidazole-succ 5e-37
TIGR02735365 TIGR02735, purC_vibrio, phosphoribosylaminoimidazo 2e-33
PRK13960367 PRK13960, PRK13960, phosphoribosylaminoimidazole-s 5e-31
cd00476230 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succin 1e-29
cd01415230 cd01415, SAICAR_synt_PurC, bacterial and archaeal 3e-23
PRK09362238 PRK09362, PRK09362, phosphoribosylaminoimidazole-s 4e-20
PRK13959341 PRK13959, PRK13959, phosphoribosylaminoimidazole-s 2e-15
cd01416252 cd01416, SAICAR_synt_Ade5, Ade5_like 5-aminoimidaz 1e-13
>gnl|CDD|178159 PLN02544, PLN02544, phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information 
 Score =  651 bits (1682), Expect = 0.0
 Identities = 257/337 (76%), Positives = 297/337 (88%)

Query: 72  QQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYL 131
              LSLD + SS R+ E+LG IK +LSN L+ETNL LTVPGL S+ RGKVRDIYD GDYL
Sbjct: 34  SPALSLDDLSSSGRRPEVLGAIKEALSNCLTETNLDLTVPGLGSRRRGKVRDIYDLGDYL 93

Query: 132 VLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSV 191
           VLVTTDRQSAFDR+LASIPFKGQVLN+TS WWF+ T+HITPNA++SSPD NVTIAKKCSV
Sbjct: 94  VLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTKHITPNALVSSPDPNVTIAKKCSV 153

Query: 192 IPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHD 251
            PVEFVVRG++TGST TSLWTVYNKG+RNYCGN LPDG+VKNQKLPANILTPTTKA DHD
Sbjct: 154 FPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHD 213

Query: 252 VPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSIL 311
           VP++P+EIV+ GLMT+ +FDE S KAL LF +GQ VA+EHGLILVDTKYEFGK +D +IL
Sbjct: 214 VPISPEEIVEEGLMTQEDFDEVSSKALALFAFGQEVAAEHGLILVDTKYEFGKDADGTIL 273

Query: 312 LIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEEL 371
           LIDEVHTPDSSRYW+A SYEER  +GLEPEN+DKEFLRLWFK++C+PY+DEVLP+AP EL
Sbjct: 274 LIDEVHTPDSSRYWLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKDEVLPEAPAEL 333

Query: 372 ICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNV 408
           +CEL+WRYI LYE IT  +F+V  T+EPIH+RISRNV
Sbjct: 334 VCELSWRYIKLYETITGEKFEVPDTQEPIHERISRNV 370

Length = 370
>gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|237571 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|216394 pfam01259, SAICAR_synt, SAICAR synthetase Back     alignment and domain information
>gnl|CDD|223230 COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information
>gnl|CDD|131782 TIGR02735, purC_vibrio, phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type Back     alignment and domain information
>gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|133468 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed Back     alignment and domain information
>gnl|CDD|237570 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|133471 cd01416, SAICAR_synt_Ade5, Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
PLN02544370 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
PRK12607313 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
PRK13961296 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
cd01414279 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N- 100.0
PRK13960367 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
TIGR02735365 purC_vibrio phosphoribosylaminoimidazole-succinoca 100.0
PRK13959341 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
COG0152247 PurC Phosphoribosylaminoimidazolesuccinocarboxamid 100.0
PRK09362238 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
cd01415230 SAICAR_synt_PurC bacterial and archaeal 5-aminoimi 100.0
cd00476230 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxam 100.0
cd01416252 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-s 100.0
TIGR00081237 purC phosphoribosylaminoimidazole-succinocarboxami 100.0
PF01259248 SAICAR_synt: SAICAR synthetase; InterPro: IPR00163 100.0
KOG2835373 consensus Phosphoribosylamidoimidazole-succinocarb 100.0
KOG2835373 consensus Phosphoribosylamidoimidazole-succinocarb 98.72
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information 
Probab=100.00  E-value=2e-110  Score=838.82  Aligned_cols=363  Identities=72%  Similarity=1.162  Sum_probs=342.5

Q ss_pred             CCCCCCCceeecccccccccccCCcccccccccchhhHHhcccchhhhHHhHHHhhhhcccccccccCCCCCCccccccc
Q 014878           42 SNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKV  121 (416)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~l~~~~~~l~~iyeGKv  121 (416)
                      +....++..++.++.+.+....++.    .+++++.+.+.++.++++++.+++++|++||++|+|+.++|+|+++|+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~lyeGKv   83 (370)
T PLN02544          8 PEFMKPASPSSGVGGASGKFRAQQL----PSPALSLDDLSSSGRRPEVLGAIKEALSNCLTETNLDLTVPGLGSRRRGKV   83 (370)
T ss_pred             ccccCCccccccccccccccccccC----CCCCccccccccccccHHHHHHHHHHHHhhhhhccccccCCCCcccccccc
Confidence            3334444555555555555555543    577888899999999999999999999999999999888999999999999


Q ss_pred             ceeeecCCeEEEEEcCCCCccccccCCCCchhHHHHHHHHHHHHhccCCCCcccccCCCCCeEEEeccceeeeEEEEeee
Q 014878          122 RDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGF  201 (416)
Q Consensus       122 KdVY~~~d~ll~v~kDriSAFD~~~~~IpgKG~vln~iS~~~Fe~L~~gIptHfV~~~~~~~~ivkk~~mIPlEvIVRny  201 (416)
                      |+||+.+|.++|+||||+||||+++++|||||++||+||+|||+++++|||||||+.+++++|+||||+|||||||||||
T Consensus        84 KdvY~~~d~ll~vfkDriSAFD~~~~~IpgKG~vln~iS~~wF~~l~~~IptH~i~~~~~~~mlVkk~~~iPlEvVvR~y  163 (370)
T PLN02544         84 RDIYDLGDYLVLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTKHITPNALVSSPDPNVTIAKKCSVFPVEFVVRGY  163 (370)
T ss_pred             ceEEecCCeEEEEEeCCcccccccCCCCCChhHHHHHHHHHHHHHhhCcCCcceeccCCCceEEEEEeeeeeEEEEEEee
Confidence            99999988999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCCCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014878          202 VTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLF  281 (416)
Q Consensus       202 atGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~hD~~Is~e~~~~lglv~~ee~~~I~~~al~I~  281 (416)
                      +|||++||+|++|++|.+++||+.||+|+++|++|++|||||+||+|+||++||+++++++|+++++++++|+++|++||
T Consensus       164 ~tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~~i~~~g~~~~ee~~~i~~~alki~  243 (370)
T PLN02544        164 MTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPEEIVEEGLMTQEDFDEVSSKALALF  243 (370)
T ss_pred             eeccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHHHHHHHHHhcCCCCCC
Q 014878          282 EYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYED  361 (416)
Q Consensus       282 ~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~~R~wl~~~~~~~~~  361 (416)
                      ++++++|+++||+|||||||||++.+|+|+|+|||+|||||||||+++|++||++|++|++|||||||+||++++.+|++
T Consensus       244 ~~l~~~~~~~GiiLvD~K~EFG~d~~G~IvL~DEI~TPDSsR~Wd~~tye~~~~~G~~~~s~DKq~vR~wl~~~~~~~~~  323 (370)
T PLN02544        244 AFGQEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYWLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKD  323 (370)
T ss_pred             HHHHHHHHHCCCeEEEeeEEeeECCCCcEEEEEeccCCCceeeeecCCccccccCCCCCCCcChHHHHHHHHccCccccC
Confidence            99999999999999999999999989999999999999999999999999999999999999999999999988777888


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcCHHHHHHHHH
Q 014878          362 EVLPDAPEELICELAWRYIFLYEAITKSRFDVSSTKEPIHDRISRNV  408 (416)
Q Consensus       362 ~~~P~LP~evv~~~s~rY~~~~e~iTG~~~~~~~~~~~~~~ri~~n~  408 (416)
                      +++|+||+|+|++|++||+++||+|||++|+.|+..+++++||++||
T Consensus       324 ~~~P~lP~evv~~ts~rY~~~ye~iTG~~f~~~~~~~~~~~ri~~~~  370 (370)
T PLN02544        324 EVLPEAPAELVCELSWRYIKLYETITGEKFEVPDTQEPIHERISRNV  370 (370)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCHHHHHHhcC
Confidence            88999999999999999999999999999999988999999999986

>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type Back     alignment and domain information
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed Back     alignment and domain information
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6 Back     alignment and domain information
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
3r9r_A301 Structure Of A Phosphoribosylaminoimidazole-Succino 7e-33
1a48_A306 Saicar Synthase Length = 306 2e-32
1obg_A305 Saicar-Synthase Complexed With Atp Length = 305 2e-32
2yzl_A242 Crystal Structure Of Phosphoribosylaminoimidazole- 7e-11
2ywv_A244 Crystal Structure Of Saicar Synthetase From Geobaci 8e-11
3u55_A238 Crystal Structure (Type-2) Of Saicar Synthetase Fro 4e-09
3u54_A238 Crystal Structure (Type-1) Of Saicar Synthetase Fro 2e-08
4ja0_A 425 Crystal Structure Of The Invertebrate Bi-functional 6e-08
3nua_A238 Crystal Structure Of Phosphoribosylaminoimidazole-S 5e-07
1kut_A230 Structural Genomics, Protein Tm1243, (Saicar Synthe 3e-04
3kre_A263 Crystal Structure Of Phosphoribosylaminoimidazole-s 7e-04
>pdb|3R9R|A Chain A, Structure Of A Phosphoribosylaminoimidazole-Succinocarboxamide Synthase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 301 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 150/289 (51%), Gaps = 29/289 (10%)
Query: 119 GKVRDIYDGGD-YLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVI 176
           GKVR++Y   D +L+ V TDR SAFD +L + IP KG++L   S+++F       PN + 
Sbjct: 18  GKVRELYRVDDEHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFFFGLL--TVPNHLA 75
Query: 177 SSPD---------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALP 227
             PD             + ++  ++PVE V RG++TGS    L      G    CG+ LP
Sbjct: 76  GPPDDPRIPEEVLGRALLVRRLDMLPVECVARGYLTGS---GLLDYQRTG--AVCGHVLP 130
Query: 228 DGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQ 285
            GL +  +L   + TP TKA+  +HD+ V  D    +GL+     ++   + ++++    
Sbjct: 131 QGLGEASRLDPPLFTPATKADIGEHDMNV--DFAAVVGLVGAVRANQLRDETIKIYTRAA 188
Query: 286 RVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDK 345
             A   G+IL DTK+EFG   + +++L DEV TPDSSRYW A  Y    Q G+  ++ DK
Sbjct: 189 AHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHY----QPGVVQDSFDK 244
Query: 346 EFLRLWFKDHCNPYE---DEVLPDAPEELICELAWRYIFLYEAITKSRF 391
           +F+R W     + ++   D   P  P+E+      RYI  YE I+   F
Sbjct: 245 QFVRNWLTGPESGWDRASDTPPPPLPDEVAVATRERYIEAYERISGLSF 293
>pdb|1A48|A Chain A, Saicar Synthase Length = 306 Back     alignment and structure
>pdb|1OBG|A Chain A, Saicar-Synthase Complexed With Atp Length = 305 Back     alignment and structure
>pdb|2YZL|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole- Succinocarboxamide Synthase With Adp From Methanocaldococcus Jannaschii Length = 242 Back     alignment and structure
>pdb|2YWV|A Chain A, Crystal Structure Of Saicar Synthetase From Geobacillus Kaustophilus Length = 244 Back     alignment and structure
>pdb|3U55|A Chain A, Crystal Structure (Type-2) Of Saicar Synthetase From Pyrococcus Horikoshii Ot3 Length = 238 Back     alignment and structure
>pdb|3U54|A Chain A, Crystal Structure (Type-1) Of Saicar Synthetase From Pyrococcus Horikoshii Ot3 Length = 238 Back     alignment and structure
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine Biosynthesis Enzyme Paics At 2.8 A Resolution Length = 425 Back     alignment and structure
>pdb|3NUA|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-Succinocarboxamide Synthase From Clostridium Perfringens Length = 238 Back     alignment and structure
>pdb|1KUT|A Chain A, Structural Genomics, Protein Tm1243, (Saicar Synthetase) Length = 230 Back     alignment and structure
>pdb|3KRE|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-succinocarboxamide Synthase From Ehrlichia Chaffeensis At 1.8a Resolution Length = 263 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
3r9r_A301 Phosphoribosylaminoimidazole-succinocarboxamide S; 1e-135
2cnq_A306 Phosphoribosylaminoimidazole-succinocarboxamide sy 1e-131
1kut_A230 Phosphoribosylaminoimidazole-succinocarboxamide sy 8e-80
2ywv_A244 Phosphoribosylaminoimidazole succinocarboxamide S; 1e-72
2z02_A242 Phosphoribosylaminoimidazole-succinocarboxamide sy 2e-67
3nua_A238 Phosphoribosylaminoimidazole-succinocarboxamide S; 2e-65
2gqr_A237 Phosphoribosylaminoimidazole-succinocarboxamide sy 5e-63
3kre_A263 Phosphoribosylaminoimidazole-succinocarboxamide S; 1e-62
2h31_A 425 Multifunctional protein ADE2; alpha-beta-alpha, li 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus} Length = 301 Back     alignment and structure
 Score =  387 bits (997), Expect = e-135
 Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 29/303 (9%)

Query: 106 LHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWW 163
           +  ++   +    GKVR++Y    ++L+ V TDR SAFD +L + IP KG++L   S+++
Sbjct: 5   MRPSLSDYQHVASGKVRELYRVDDEHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFF 64

Query: 164 FDQTRHITPNAVISSPDK---------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY 214
           F       PN +   PD             + ++  ++PVE V RG++TGS        Y
Sbjct: 65  FGLL--TVPNHLAGPPDDPRIPEEVLGRALLVRRLDMLPVECVARGYLTGSG----LLDY 118

Query: 215 NKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDE 272
            +     CG+ LP GL +  +L   + TP TKA+  +HD+ V    +V  GL+     ++
Sbjct: 119 QRT-GAVCGHVLPQGLGEASRLDPPLFTPATKADIGEHDMNVDFAAVV--GLVGAVRANQ 175

Query: 273 ASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEE 332
              + ++++      A   G+IL DTK+EFG   + +++L DEV TPDSSRYW A  Y+ 
Sbjct: 176 LRDETIKIYTRAAAHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQP 235

Query: 333 RFQSGLEPENVDKEFLRLWF---KDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKS 389
               G+  ++ DK+F+R W    +   +   D   P  P+E+      RYI  YE I+  
Sbjct: 236 ----GVVQDSFDKQFVRNWLTGPESGWDRASDTPPPPLPDEVAVATRERYIEAYERISGL 291

Query: 390 RFD 392
            F 
Sbjct: 292 SFS 294
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A* Length = 306 Back     alignment and structure
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1 Length = 230 Back     alignment and structure
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} Length = 244 Back     alignment and structure
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A* Length = 242 Back     alignment and structure
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} Length = 238 Back     alignment and structure
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A* Length = 237 Back     alignment and structure
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str} Length = 263 Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Length = 425 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
2cnq_A306 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
3r9r_A301 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
3u55_A238 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
2ywv_A244 Phosphoribosylaminoimidazole succinocarboxamide S; 100.0
2gqr_A237 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
1kut_A230 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
3kre_A263 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
2z02_A242 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
3nua_A238 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
2h31_A 425 Multifunctional protein ADE2; alpha-beta-alpha, li 100.0
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A* Back     alignment and structure
Probab=100.00  E-value=9.9e-91  Score=684.29  Aligned_cols=274  Identities=38%  Similarity=0.651  Sum_probs=256.2

Q ss_pred             ccccccccCCCC-CCcccccccceeeecC-CeEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhccCCCCccccc
Q 014878          101 LSETNLHLTVPG-LKSKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVIS  177 (416)
Q Consensus       101 l~~t~l~~~~~~-l~~iyeGKvKdVY~~~-d~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIptHfV~  177 (416)
                      |.+|+|    |+ ++++|+||||+||+++ +.+||+||||+||||++++ .|||||++||+||+|||++|++|||||||+
T Consensus         3 ~~~~~~----~~~~~~ly~GKvkdvY~~~d~~ll~v~~DriSAfD~~~~~~IpgKG~vl~~iS~~~F~~L~~~iptH~i~   78 (306)
T 2cnq_A            3 ITKTEL----DGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVD   78 (306)
T ss_dssp             CCSCCC----TTSSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBCC
T ss_pred             cccccc----cccccccccCCceEEEEcCCCEEEEEEeCCCCCcccccCCCCCcHhHHHHHHHHHHHHHHhccCCcceee
Confidence            345555    77 9999999999999997 5899999999999999986 899999999999999999999999999996


Q ss_pred             C----------------------CCCCeEEEeccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCC
Q 014878          178 S----------------------PDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQK  235 (416)
Q Consensus       178 ~----------------------~~~~~~ivkk~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~k  235 (416)
                      .                      +++++|+||||+|||||||||||+|||    +|++|++ .+++||+.||+|+++|++
T Consensus        79 ~~~~~~~~~~~P~~~~~y~y~~~l~~r~~lvkk~~~iPlE~VvR~y~tGS----~~k~y~~-~~~v~Gi~lp~Gl~eg~~  153 (306)
T 2cnq_A           79 IAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGS----AWKEYVK-TGTVHGLKQPQGLKESQE  153 (306)
T ss_dssp             CCTTCCGGGGSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHH----HHHHHHH-HSEETTEECCTTCCTTCE
T ss_pred             cccccccccccccccccccchhhcCCceEEEEecceeeEEEEEeeeeccc----hHHHHhc-cCccccccCCCCCcccCC
Confidence            3                      467889999999999999999999999    5999998 599999999999999999


Q ss_pred             CCCceeeeccCCC--CCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecC-CcEEE
Q 014878          236 LPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSD-DSILL  312 (416)
Q Consensus       236 L~~PI~epstK~d--~hD~~Is~e~~~~lglv~~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~-GeIvL  312 (416)
                      ||+|||||+||+|  +|||+||++++++  +++++++++|+++|++||++++++|+++||+|||||||||++.+ |+|+|
T Consensus       154 Lp~Pi~tp~tK~d~~~hD~~Is~~~~~~--~~~~e~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~~~G~ivL  231 (306)
T 2cnq_A          154 FPEPIFTPSTKAEQGEHDENISPAQAAE--LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIIL  231 (306)
T ss_dssp             EEEEEECCBCCCC---CCCBCCHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEE
T ss_pred             CCCCEEEeeecccccCCCCCCCHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeEEeCCCCcEEE
Confidence            9999999999999  4999999999998  79999999999999999999999999999999999999999977 99999


Q ss_pred             EeeecCCCCcceeeccchhhhhcCCCCCCCCcHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q 014878          313 IDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKD-HCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRF  391 (416)
Q Consensus       313 iDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~~R~wl~~-~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~~~  391 (416)
                      +|||+||||||||++++|+    .|+.|++|||||||+||.+ .|+   ..++|+||+|++++|+++|+++|++|||++|
T Consensus       232 ~DEI~TPDSsR~W~~~~y~----~G~~~~s~DKq~~R~~l~~~g~~---~~~~p~lp~~vv~~~~~~Y~e~~erltg~~~  304 (306)
T 2cnq_A          232 VDEVLTPDSSRFWNGASYK----VGESQDSYDKQFLRDWLTANKLN---GVNGVKMPQDIVDRTRAKYIEAYETLTGSKW  304 (306)
T ss_dssp             ESCCSCTTTEEEEETTTCC----TTSCCCCSSTHHHHHHHHHTTCT---TCTTCCCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEeecCCCccceecccccc----CCCCCcccCHHHHHhHHhhcCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999998    4999999999999999986 354   3348999999999999999999999999988


Q ss_pred             C
Q 014878          392 D  392 (416)
Q Consensus       392 ~  392 (416)
                      .
T Consensus       305 ~  305 (306)
T 2cnq_A          305 S  305 (306)
T ss_dssp             C
T ss_pred             C
Confidence            5
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus} Back     alignment and structure
>3u55_A Phosphoribosylaminoimidazole-succinocarboxamide S; saicar synthetase-like fold, ligase, ATP-binding, NOVO purine biosynthesis; 1.90A {Pyrococcus horikoshii} PDB: 3u54_A Back     alignment and structure
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} Back     alignment and structure
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A* Back     alignment and structure
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1 Back     alignment and structure
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str} Back     alignment and structure
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A* Back     alignment and structure
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} SCOP: d.143.1.0 Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d2cnqa1304 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast 1e-61
d1kuta_224 d.143.1.1 (A:) SAICAR synthase {Thermotoga maritim 8e-44
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 304 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: SAICAR synthase
domain: SAICAR synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  199 bits (506), Expect = 1e-61
 Identities = 95/316 (30%), Positives = 149/316 (47%), Gaps = 39/316 (12%)

Query: 101 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNE 158
           +++T L   +P +    RGKVRDIY+     L+ V TDR SA+D I+  SIP KG +L +
Sbjct: 2   ITKTELDGILPLV---ARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTK 58

Query: 159 TSLWWFDQTRHITPNAVISSP----------------------DKNVTIAKKCSVIPVEF 196
            S +WF    +   N ++                         +    +  K  +IP+E 
Sbjct: 59  LSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEV 118

Query: 197 VVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTP 256
           +VRG++TGS                 G   P GL ++Q+ P  I TP+TKAE  +     
Sbjct: 119 IVRGYITGSAWKEYV-----KTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENI 173

Query: 257 DEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGK-SSDDSILLIDE 315
                  L+ E      +  A++L+   +  A E G+I+ DTK+EFG     + I+L+DE
Sbjct: 174 SPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDE 233

Query: 316 VHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICEL 375
           V TPDSSR+W   SY+     G   ++ DK+FLR W   +     +      P++++   
Sbjct: 234 VLTPDSSRFWNGASYKV----GESQDSYDKQFLRDWLTANKLNGVNG--VKMPQDIVDRT 287

Query: 376 AWRYIFLYEAITKSRF 391
             +YI  YE +T S++
Sbjct: 288 RAKYIEAYETLTGSKW 303
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d2cnqa1304 SAICAR synthase {Baker's yeast (Saccharomyces cere 100.0
d1kuta_224 SAICAR synthase {Thermotoga maritima [TaxId: 2336] 100.0
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: SAICAR synthase
domain: SAICAR synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-85  Score=642.31  Aligned_cols=276  Identities=37%  Similarity=0.638  Sum_probs=255.0

Q ss_pred             cccccccccCCCC-CCcccccccceeeecC-CeEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhccCCCCcccc
Q 014878          100 RLSETNLHLTVPG-LKSKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVI  176 (416)
Q Consensus       100 ~l~~t~l~~~~~~-l~~iyeGKvKdVY~~~-d~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIptHfV  176 (416)
                      +|++|+|    ++ |+++|+||||+||+++ +.+||+||||+||||++++ .|||||++||+||+|||++|++|||||||
T Consensus         1 ~~~~~~~----~~~l~ll~~GKvK~vY~~d~~~ll~~~tDriSAfD~~~~~~Ip~KG~~l~~is~~~F~~l~~gi~tH~i   76 (304)
T d2cnqa1           1 SITKTEL----DGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLV   76 (304)
T ss_dssp             CCCSCCC----TTSSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBC
T ss_pred             Cceeecc----CCCCcceecccceeEEEcCCCEEEEEEECCccccccccCCCCCChHHHHHHHHHHHHHHhhccCCccee
Confidence            3678888    43 8899999999999985 5899999999999999986 89999999999999999999999999999


Q ss_pred             cC----------------------CCCCeEEEeccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCC
Q 014878          177 SS----------------------PDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQ  234 (416)
Q Consensus       177 ~~----------------------~~~~~~ivkk~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~  234 (416)
                      +.                      ++++.|+|++|+|||||||||||+|||    +|++|+++ +++||+.+|+|+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vkk~~~iPiE~VvR~y~tGS----~~~~y~~~-~~~~g~~lp~gl~~~~  151 (304)
T d2cnqa1          77 DIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGS----AWKEYVKT-GTVHGLKQPQGLKESQ  151 (304)
T ss_dssp             CCCTTCCGGGGSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHH----HHHHHHHH-SEETTEECCTTCCTTC
T ss_pred             ccCCchhhhhcccccccccchhhccCCceeEEEeeeeeeeEEEEecceecc----ceeecccC-ceeccccCCCCccccc
Confidence            74                      357899999999999999999999999    69999886 8999999999999999


Q ss_pred             CCCCceeeeccCCC--CCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCC-cEE
Q 014878          235 KLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDD-SIL  311 (416)
Q Consensus       235 kL~~PI~epstK~d--~hD~~Is~e~~~~lglv~~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~G-eIv  311 (416)
                      +|++|+|||+||+|  +||.+++.+++..  +++++++++|++++++||++++++|+++||+|||||||||++.+| +||
T Consensus       152 ~l~~pi~tpstK~e~gd~d~~~~~~~~~~--i~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~~~eii  229 (304)
T d2cnqa1         152 EFPEPIFTPSTKAEQGEHDENISPAQAAE--LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEII  229 (304)
T ss_dssp             EEEEEEECCBCCCC---CCCBCCHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEE
T ss_pred             cCCcccccchhhhhcchhhhhhhHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEEecccccceE
Confidence            99999999999998  3888898888765  799999999999999999999999999999999999999998655 799


Q ss_pred             EEeeecCCCCcceeeccchhhhhcCCCCCCCCcHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q 014878          312 LIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRF  391 (416)
Q Consensus       312 LiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~~~  391 (416)
                      |+||++||||||||++++|+    .|..+++||||++|+||.+++  |...++|+||+|++++++++|+++||+|||++|
T Consensus       230 liDEv~TPDs~R~W~~~~y~----~g~~~~~lDKq~~Rd~l~~~~--~~~~~~p~lP~ei~~~~~~~Y~~~~~~ltG~~f  303 (304)
T d2cnqa1         230 LVDEVLTPDSSRFWNGASYK----VGESQDSYDKQFLRDWLTANK--LNGVNGVKMPQDIVDRTRAKYIEAYETLTGSKW  303 (304)
T ss_dssp             EESCCSCTTTEEEEETTTCC----TTSCCCCSSTHHHHHHHHHTT--CTTCTTCCCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEeeecCCCccceecccccc----CCCCccccchHHHHHHHHhcC--cCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998    599999999999999999854  555678999999999999999999999999998


Q ss_pred             C
Q 014878          392 D  392 (416)
Q Consensus       392 ~  392 (416)
                      .
T Consensus       304 ~  304 (304)
T d2cnqa1         304 S  304 (304)
T ss_dssp             C
T ss_pred             C
Confidence            3
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure