Citrus Sinensis ID: 014879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mspdsnkrpgippshpnnnnpnaislpfshmvlpsshyrplldslpplspsmssfsdpnsgnnttsvcidervvnslglsipspvnrvtnnngsrvsenlpprrghrrsssdiplgfSAMIQSStqlipigskgaiekpiQLVKQESEWNNVKKDAsrnvegmgerkseeDVADDLFNEYMNlenidtlnssctedkdmdsrasgsktngcessdnevesrvygrsssgilsekregikrsacgdiaptvrhcrsvsmdsymgnlpfddeslrlppggqlspgnpsdgnlakmslefngefndAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQrdsagltsenNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL
Flexible Loop (DISEMBL)
mspdsnkrpgippshpnnNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSlglsipspvnrvtnnngsrvsenlpprrghrrssSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLvkqesewnnvkkdasrnvegmgerkseedVADDLFNEYMNLEnidtlnssctedkdmdsrasgsktngcessdnevesrvygrsssgilsekregikrsacgdiaptvrHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAeialsdpkrakrilanrqsaarskerkMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL
Low Complexity Region (SEG)
MSPDSNKRpgippshpnnnnpnAISLPFSHMVLPSSHYRplldslpplspsmssfsdpnsGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSfllfyyllllhl
Disordered region (IsUnstruct)
******************************************************************VCIDERVVNSLG*************************************************I************************************************FNEYMN************************************************************CGDIAPTVRHCR*********************************************EFNDAELKKIWANEKLAEIA************************************************VTI*************************AQLKDGINSFLLFYYLLLL**
Disordered Region (DISOPRED)
*************************************************************************************************************SSD**LGFS************************************************************************************************************************************************************************************************************************************ISELEQKVQTLQTEATTLSAQVTILQ*********NNE*****************INSFLLFYYLLLLHL
Disordered Region (DISEMBL)
***********PPSHPNNNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSP*************TTSVCIDERVVNSLGLSIPSPVNRVTNN*******************SDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDAS*************DVADDLFNEYMNLENIDTLNSSCTE**********************************ILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILA************MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL
Disordered Region (DISPRO)
********************************************************************************************************************FSAMIQSSTQL*******************************************DVADDLFNEYMNLENID*****************************************************************************************************************FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTILQRDxxxxxxxxxxxxxxxxxxxxxAQLKDGINSFLLFYYLLLLHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q69IL4	380	Transcription factor RF2a	no	no	0.254	0.278	0.716	6e-36
Q04088	398	Probable transcription fa	no	no	0.319	0.334	0.540	4e-35
Q6S4P4	329	Transcription factor RF2b	no	no	0.245	0.310	0.725	5e-35
Q9MA75	341	Transcription factor VIP1	no	no	0.370	0.451	0.511	2e-33
P14233	242	TGACG-sequence-specific D	N/A	no	0.175	0.301	0.337	5e-05
P42774	315	G-box-binding factor 1 OS	no	no	0.161	0.212	0.388	0.0006
P23922	349	Transcription factor HBP-	N/A	no	0.158	0.189	0.363	0.0007
Q5UEM8	395	Cyclic AMP-responsive ele	N/A	no	0.394	0.415	0.252	0.0008

>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 89/106 (83%)

Query: 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE 360
            + AE KK  +  KLAE+AL DPKRAKRI ANRQSAARSKERKMRYI+ELE+KVQTLQTE
Sbjct: 160 MSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 219

Query: 361 ATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           ATTLSAQ+ +LQRD++GLT+EN+ELK RLQ MEQQ  L+D +N  L
Sbjct: 220 ATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTL 265

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 101/159 (63%), Gaps = 26/159 (16%)

Query: 248 PTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELK 307
           P +RH  S SMD  M                          N+ +M +  N + +  + K
Sbjct: 153 PRIRHQHSQSMDGSM--------------------------NINEMLMSGNEDDSAIDAK 186

Query: 308 KIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQ 367
           K  +  KLAE+AL DPKRAKRI ANRQSAARSKERK RYI ELE+KVQTLQTEATTLSAQ
Sbjct: 187 KSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQ 246

Query: 368 VTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           +T+LQRD+ GLT ENNELK RLQ MEQQ  L+D +N  L
Sbjct: 247 LTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEAL 285

Putative transcription factor with an activatory role.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 87/102 (85%)

Query: 305 ELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTL 364
           E KK    E+L+++A  DPKRAKRILANRQSAARSKERK RYI+ELE+KVQTLQTEATTL
Sbjct: 115 EAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174

Query: 365 SAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           SAQ+T+ QRD+ GL++EN ELK RLQAMEQQAQL+D +N  L
Sbjct: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDAL 216

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 110/172 (63%), Gaps = 18/172 (10%)

Query: 251 RHCRSVSMDS-YMGNLPFDDESLRLPPGGQLSPGNPS-------DGNLAKMSLEFNGE-- 300
           RH RS S+DS +  +L   +E       G+   GN         DG ++  S  FN E  
Sbjct: 109 RHVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSAS--FNIESI 166

Query: 301 -----FNDAELKKI-WANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKV 354
                  D+  K +    ++LAE+AL DPKRAKRILANRQSAARSKERK+RY  ELE+KV
Sbjct: 167 LASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKV 226

Query: 355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           QTLQ EATTLSAQVT+LQR ++ L +EN  LK RLQA+EQQA+L+D +N  L
Sbjct: 227 QTLQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEAL 278

Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|P14233|TGA1B_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 7/80 (8%)

Query: 309 IWANEKLAEIALSD-------PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEA 361
           I  ++KL  +ALSD        K+  R++ NR+SA  S++RK  Y+ ELE KV+ + +  
Sbjct: 163 INIHQKLTNVALSDNVNNDEDEKKRARLVRNRESAQLSRQRKKHYVEELEDKVRIMHSTI 222

Query: 362 TTLSAQVTILQRDSAGLTSE 381
             L+A+V  +  ++A L ++
Sbjct: 223 QDLNAKVAYIIAENATLKTQ 242

Binds specifically to the DNA sequence 5'-TGACG-3'.

Nicotiana tabacum (taxid: 4097)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383
           KR KR  +NR+SA RS+ RK     +L+Q+V++L  E  +L  ++  L  +   L SENN
Sbjct: 224 KRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENN 283

Query: 384 ELKFRLQ 390
            ++  LQ
Sbjct: 284 SIQDELQ 290

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 42/66 (63%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383
           K+ KR L+NR+SA RS+ RK     EL Q+ + L++E ++L  ++  ++++   L S+N 
Sbjct: 254 KKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNT 313

Query: 384 ELKFRL 389
            LK +L
Sbjct: 314 SLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q5UEM8|CR3L4_MACFA Cyclic AMP-responsive element-binding protein 3-like protein 4 OS=Macaca fascicularis GN=CREB3L4 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 26/190 (13%)

Query: 244 GDIAPTVRHCRSVSMDSY-----------MGNLPFDDESLRLPPGGQLSPGNPSDGNLAK 292
           G+  PTV    S+ +D +           +  LPFD  +  LP  G L+P  P    L  
Sbjct: 127 GETGPTV-GLISIQLDQWSPAFMVPDSCMVSELPFDAHAHILPRAGTLAP-VPCTTLLPC 184

Query: 293 MSLEFNGEFNDAELKKIWANEKLA---EIALSDP-----KRAKRILANRQSAARSKERKM 344
            +L     F   E K++   E ++    + L+       K+ +R + N+QSA  S+ RK 
Sbjct: 185 QTL-----FLTDEEKRLLGQEGVSLPSHLPLTKAEERVLKKVRRKIRNKQSAQDSRRRKK 239

Query: 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINS 404
            YI  LE +V     +   L  +V  L+R +  L ++  +L+  +     +A        
Sbjct: 240 EYIDGLESRVAACSAQNQELQKKVQELERHNISLVAQLRQLQTLIAQTSNKAAQTSTCVL 299

Query: 405 FLLFYYLLLL 414
            LLF   L++
Sbjct: 300 ILLFSLALII 309

Transcriptional activator that may play a role in the unfolded protein response. Binds to the UPR element (UPRE) but not to CRE element. Preferentially binds DNA with to the consensus sequence 5'-T[GT]ACGT[GA][GT]-3' and has transcriptional activation activity from UPRE. Binds to NF-kappa-B site and has transcriptional activation activity from NF-kappa-B-containing regulatory elements.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
225427794	589	PREDICTED: uncharacterized protein LOC10	0.951	0.672	0.580	1e-123
255538856	481	DNA binding protein, putative [Ricinus c	0.894	0.773	0.582	1e-112
449461639	571	PREDICTED: uncharacterized protein LOC10	0.947	0.690	0.552	1e-112
449526371	566	PREDICTED: uncharacterized protein LOC10	0.947	0.696	0.552	1e-112
224077964	507	predicted protein [Populus trichocarpa]	0.891	0.731	0.590	1e-111
351722269	525	bZIP transcription factor bZIP28 [Glycin	0.899	0.712	0.562	1e-109
449529770	554	PREDICTED: uncharacterized LOC101215703,	0.963	0.723	0.535	1e-108
356545029	538	PREDICTED: uncharacterized protein LOC78	0.843	0.652	0.604	1e-108
449461635	563	PREDICTED: uncharacterized protein LOC10	0.947	0.699	0.542	1e-108
297744714	369	unnamed protein product [Vitis vinifera]	0.670	0.756	0.661	1e-107

>gi|225427794|ref|XP_002269363.1| PREDICTED: uncharacterized protein LOC100255631 [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/465 (58%), Positives = 314/465 (67%), Gaps = 69/465 (14%)

Query: 1   MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS---------------SHYRPL---- 41
            S DS+KR G PPSHP+   P  IS P+S + +P                SH R L    
Sbjct: 59  FSGDSSKRHGFPPSHPHQIPP--IS-PYSQIPVPRPANQQLVSQNFSPGPSHSRSLSQPS 115

Query: 42  ---LDSLPPLSPSMSSFSDPNSGNNTTS--VCIDERVVNSLGLSIPSPVNRVTNNNGSRV 96
              LDSLPPLSPS    S   S ++  S  + +++R  +S  +  PSP +  +  N  RV
Sbjct: 116 FFSLDSLPPLSPSPYRDSSSTSISDAVSADISMEDRDASSHSVLPPSP-SPFSRGNSMRV 174

Query: 97  SENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIE-------------KPIQLV 143
            ENLPPR+ HRRSSSDIP GFS+++QSS  LIP+   GA+E             KP+QLV
Sbjct: 175 GENLPPRKAHRRSSSDIPFGFSSIMQSSPPLIPLRGSGALERSMSGRDNNMAAAKPVQLV 234

Query: 144 KQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK------ 197
           K+ES W   ++    N EGMGERKSE +V DDL + YMNL+NID LNS  TE+K      
Sbjct: 235 KRESSW---ERGGDSNAEGMGERKSEGEVVDDLLSAYMNLDNIDALNSPGTEEKNGTENR 291

Query: 198 -DMDSRASGSKTNGCESSDNEVESRV---------YGRSSSGILSEKREGIKRSACGDIA 247
            D+DSRASG+KTNG +SSDNE ES V          G SSS   +EKREG+KRSA GDIA
Sbjct: 292 EDLDSRASGTKTNGGDSSDNEAESSVNESGNSMQKLGTSSS---AEKREGVKRSAGGDIA 348

Query: 248 PTVRHCRSVSMDSYMGNLPFDDESLRLPPG-----GQLSPGNPSDGNLAKMSLEF-NGEF 301
           PT RH RSVSMDS+MG + F DES +L P      GQLSP N  DGN A  SLEF NGEF
Sbjct: 349 PTTRHYRSVSMDSFMGKMNFGDESPKLLPSPGTRPGQLSPSNSMDGNSATFSLEFGNGEF 408

Query: 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEA 361
           + AELKKI ANEKLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEA
Sbjct: 409 SGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEA 468

Query: 362 TTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           TTLSAQ+T+LQRDSAGLTS+NNELKFRLQAMEQQAQL+D +N  L
Sbjct: 469 TTLSAQLTLLQRDSAGLTSQNNELKFRLQAMEQQAQLRDALNEAL 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538856|ref|XP_002510493.1| DNA binding protein, putative [Ricinus communis] gi|223551194|gb|EEF52680.1| DNA binding protein, putative [Ricinus communis]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/422 (58%), Positives = 287/422 (68%), Gaps = 50/422 (11%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMV--LPSSHYRPLLDSLPPLSPSMSSF------ 55
           +SNKR G+PPSHPNN      S   SH +     SH R L  S      ++ SF      
Sbjct: 41  NSNKRIGVPPSHPNNLQVIMASRSNSHNLNRGAFSHSRSLSQS------AVFSFDCLPPL 94

Query: 56  ---SDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVS-ENLPPRRGHRRSSS 111
                 +SG+N +   + +  +   GLS PSPV   T  +G +V+ ++LPPRRGHRRS S
Sbjct: 95  SPLPCLSSGSNQSDPVLTDISIEDKGLSAPSPV---TATSGLKVNNDSLPPRRGHRRSMS 151

Query: 112 D-IPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEE 170
           D +PL FSAMIQ+S QLIPIG    IEK   LVK E        D   NV+G    KS+ 
Sbjct: 152 DSVPLAFSAMIQASPQLIPIGKNSGIEKQSALVKHE-------LDGDGNVQG----KSQG 200

Query: 171 DVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGI 230
           +V DDLF+ YMNL++IDTLNSS TEDKD+DSRASG+KTNG ESSDNEVESRV        
Sbjct: 201 EVVDDLFSAYMNLDSIDTLNSSGTEDKDLDSRASGTKTNGTESSDNEVESRV-------- 252

Query: 231 LSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPP----GGQLSPGNPS 286
               ++G+KRSA GDIA   RH RS+SMDSY+GNL FDDESL+ P     GGQ SP N  
Sbjct: 253 ----KDGLKRSAGGDIARAPRHSRSLSMDSYIGNLQFDDESLKFPALGLQGGQQSPRNSI 308

Query: 287 DGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMR 345
           DG LA  +LEF N EF +AELKKI ANEKL EIA++DPKRAKRILANR SAARSKERK R
Sbjct: 309 DGKLANFNLEFGNSEFTEAELKKIMANEKLTEIAMADPKRAKRILANRLSAARSKERKTR 368

Query: 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSF 405
           YI ELEQKVQTLQTEATTLS QVT+LQRDS  LTS+NNELKF LQAMEQQA+LKD +N  
Sbjct: 369 YILELEQKVQTLQTEATTLSTQVTVLQRDSTALTSQNNELKFCLQAMEQQAKLKDALNEA 428

Query: 406 LL 407
           L+
Sbjct: 429 LV 430

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461639|ref|XP_004148549.1| PREDICTED: uncharacterized protein LOC101216189 [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/456 (55%), Positives = 303/456 (66%), Gaps = 62/456 (13%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS-----------SHYRPL-------LDSL 45
           D+++R GIPPS PN+     IS P+S + +             +H R L       LDSL
Sbjct: 64  DNSRRIGIPPS-PNSPQIPPIS-PYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSL 121

Query: 46  PPLSPS--MSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPR 103
           PPLSPS    S +  NS   +    +++R  +S  L  PSP  RV   N S++ ++LPPR
Sbjct: 122 PPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRV---NSSKMGDSLPPR 178

Query: 104 RGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPI-------------QLVKQESEWN 150
           + HRRS+SDIP G S+MIQ S  L+P  S G +E+               Q VK+E   +
Sbjct: 179 KAHRRSNSDIPFGLSSMIQPSP-LLPFNSSGGLERSTSSKENAGLLKPSSQFVKRE---H 234

Query: 151 NVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRA 203
           +++K    N+EGMGERKS+ D  DDLF+ YMNL++ID  NSS T DK       D+DSR 
Sbjct: 235 SLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRG 294

Query: 204 SGSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVS 257
           SG+KTNG ESSDNE ES V     S  +      +EKREGIKR+A GDIAPT RH RSVS
Sbjct: 295 SGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVS 354

Query: 258 MDSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIW 310
           MDS+MG L F DES ++PP       GQLS  N  DGN A  SLEF NGEF+ AELKKI 
Sbjct: 355 MDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIM 414

Query: 311 ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI 370
           AN+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+
Sbjct: 415 ANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL 474

Query: 371 LQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           LQRDS GLT++NNELKFRLQAMEQQAQL+D +N  L
Sbjct: 475 LQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 510

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526371|ref|XP_004170187.1| PREDICTED: uncharacterized protein LOC101227308 [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/456 (55%), Positives = 303/456 (66%), Gaps = 62/456 (13%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS-----------SHYRPL-------LDSL 45
           D+++R GIPPS PN+     IS P+S + +             +H R L       LDSL
Sbjct: 59  DNSRRIGIPPS-PNSPQIPPIS-PYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSL 116

Query: 46  PPLSPS--MSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPR 103
           PPLSPS    S +  NS   +    +++R  +S  L  PSP  RV   N S++ ++LPPR
Sbjct: 117 PPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRV---NSSKMGDSLPPR 173

Query: 104 RGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPI-------------QLVKQESEWN 150
           + HRRS+SDIP G S+MIQ S  L+P  S G +E+               Q VK+E   +
Sbjct: 174 KAHRRSNSDIPFGLSSMIQPSP-LLPFNSSGGLERSTSSKENAGLLKPSSQFVKRE---H 229

Query: 151 NVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRA 203
           +++K    N+EGMGERKS+ D  DDLF+ YMNL++ID  NSS T DK       D+DSR 
Sbjct: 230 SLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRG 289

Query: 204 SGSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVS 257
           SG+KTNG ESSDNE ES V     S  +      +EKREGIKR+A GDIAPT RH RSVS
Sbjct: 290 SGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVS 349

Query: 258 MDSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIW 310
           MDS+MG L F DES ++PP       GQLS  N  DGN A  SLEF NGEF+ AELKKI 
Sbjct: 350 MDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIM 409

Query: 311 ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI 370
           AN+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+
Sbjct: 410 ANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL 469

Query: 371 LQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           LQRDS GLT++NNELKFRLQAMEQQAQL+D +N  L
Sbjct: 470 LQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077964|ref|XP_002305468.1| predicted protein [Populus trichocarpa] gi|222848432|gb|EEE85979.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 251/425 (59%), Positives = 292/425 (68%), Gaps = 54/425 (12%)

Query: 21  PNAISLPFSH---MVLPSSHYRPLLDSLPPLSPS--MSSFSDPNSGNNTTSVCIDERVVN 75
           P + SL  +H   +  PSS +   LDSLPPLSP+    S S   S   +T V ++E+   
Sbjct: 3   PQSFSLGPTHSRSLSQPSSFFS--LDSLPPLSPAPFRDSSSPSVSDPISTDVFMEEKDGG 60

Query: 76  SLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPI-GSKG 134
           S  L  PSP NR    N  RV E+LPPR+ HRRS+SDIP G + ++Q S  LIP  GS G
Sbjct: 61  SHSLLPPSPFNR---GNAPRVVESLPPRKAHRRSNSDIPFGLANVLQCSPPLIPSRGSSG 117

Query: 135 -----------AIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNL 183
                       + KP Q VK+E  W   ++    N EGMGERKSE +V DDLF+ YMNL
Sbjct: 118 LERSMSGRENLGMAKPAQSVKKE--W---ERGGDSNAEGMGERKSEGEVVDDLFSAYMNL 172

Query: 184 ENIDTLNSSCTEDK-------DMDSRASGSKTNGCESSDNEVESRV---------YGRSS 227
           +NID LNSS T+DK       D+DSRASG+KTNG +SSDNE ES V          G SS
Sbjct: 173 DNIDVLNSSGTDDKNGNENREDLDSRASGTKTNGGDSSDNEAESSVNESGGNLPRAGLSS 232

Query: 228 SGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPG-----GQLSP 282
           S   +EKREGIKRSA GDIAPT RH RSVSMDS+MG L F +ES +LPP      GQLSP
Sbjct: 233 S---TEKREGIKRSAGGDIAPTTRHYRSVSMDSFMGKLNFGNESPKLPPSPGTRPGQLSP 289

Query: 283 GNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKE 341
            +  DGN    SL+F NGEF+ AELKKI ANEKLAEIAL+DPKRAKRILANRQSAARSKE
Sbjct: 290 TDSIDGN--AFSLDFGNGEFSGAELKKIMANEKLAEIALADPKRAKRILANRQSAARSKE 347

Query: 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDG 401
           RKMRYISELE KVQTLQTEATTLSAQ+T+LQRDS GLT++NNELKFR+QAMEQQAQL+D 
Sbjct: 348 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRIQAMEQQAQLRDA 407

Query: 402 INSFL 406
           +N  L
Sbjct: 408 LNEAL 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722269|ref|NP_001237238.1| bZIP transcription factor bZIP28 [Glycine max] gi|113367236|gb|ABI34675.1| bZIP transcription factor bZIP28 [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/434 (56%), Positives = 295/434 (67%), Gaps = 60/434 (13%)

Query: 10  GIPPSHPNNNNPNAISLPFSHM---------VLPS-------SHYRPL-------LDSLP 46
           GIPPSHP+   P  IS P+SHM          +PS       SH R L       LDSLP
Sbjct: 47  GIPPSHPHQIPP--IS-PYSHMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLP 103

Query: 47  PLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGH 106
           PLSP   +F + +S ++   V +++R V S      SP+      N S     LPPR+ H
Sbjct: 104 PLSPC--TFRESSSTSDHADVSMEDRDVTSH-----SPLPPFAARNPS-----LPPRKSH 151

Query: 107 RRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGER 166
           RRS+SDIP GFS ++QSS  LIP+  +  ++    +VK+E+ W +       NVEG GE+
Sbjct: 152 RRSNSDIPFGFSTVLQSSPPLIPLRGREGVKPNSSVVKRETNWEHG------NVEGSGEK 205

Query: 167 KSEE-DVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRASGSKTNGCESSDNEV 218
           KS E +V DDLF+ YMNL++ DTLNSS T+DK       D+DSRA G+KTNG +SSDNE 
Sbjct: 206 KSPEGEVVDDLFSAYMNLDSFDTLNSSGTDDKNGGENRDDLDSRACGTKTNGGDSSDNEA 265

Query: 219 ESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPP-- 276
           ES V      G  SEKREG+KRSA G+IAPT RH RSVSMDS++G L F DES +LPP  
Sbjct: 266 ESSVNESGHGG--SEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFGDESPKLPPSP 323

Query: 277 ---GGQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILAN 332
              G  +SP    DGN A  SLEF +GEF+  ELKKI ANEKLAEIAL+DPKRAKRILAN
Sbjct: 324 GQRGRLMSPAGGIDGNSAAFSLEFGSGEFSGPELKKIMANEKLAEIALTDPKRAKRILAN 383

Query: 333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392
           RQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+LQRDSAGLT++N+ELKFRLQ+M
Sbjct: 384 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSM 443

Query: 393 EQQAQLKDGINSFL 406
           EQQA+L+D +N  L
Sbjct: 444 EQQAKLRDALNEAL 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529770|ref|XP_004171871.1| PREDICTED: uncharacterized LOC101215703, partial [Cucumis sativus]

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/465 (53%), Positives = 302/465 (64%), Gaps = 64/465 (13%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS-----------SHYRPL-------LDSL 45
           D+N+R GIPP  PN+     IS P+S + +             +H R L       LDSL
Sbjct: 58  DNNRRIGIPPC-PNSPQVPPIS-PYSQIPVSRPMNQHSYNSVPTHSRSLSQPSFFSLDSL 115

Query: 46  PPLSPSMSSFSDPNSGNNTTSVCID----ERVVNSLGLSIPSPVNRVTNNNGSRVSENLP 101
           PPLSPS   F D  S +N+  V  D    +R  +S  L  PSP  R    N S++S+ LP
Sbjct: 116 PPLSPS--PFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRA---NSSKMSDALP 170

Query: 102 PRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQ------LVKQESEW----NN 151
           PR+ HRRS+SDIP G S+MIQS   ++P    G +E+         + KQ S++     +
Sbjct: 171 PRKAHRRSNSDIPFGLSSMIQSPP-VLPFSGSGGLERSTSSKENAGIFKQASQFVKREPS 229

Query: 152 VKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRAS 204
           ++K    ++EGMGE+KSE D  DDLF+ YMNL+NID  NSS T DK       D+DSR S
Sbjct: 230 LEKSIDNHMEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSVTNDKNGHENREDLDSRGS 289

Query: 205 GSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVSM 258
           G+KT G ESSDNE ES V     +  +      +EKREGIKR+A GDIAP  RH RS+SM
Sbjct: 290 GTKTGG-ESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISM 348

Query: 259 DSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWA 311
           DS+MG L F DES ++PP       GQLS  N  DGN    SLEF NGEF+ AELKKI A
Sbjct: 349 DSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMA 408

Query: 312 NEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTIL 371
           N+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+L
Sbjct: 409 NDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 468

Query: 372 QRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL 416
           QRDS GLT++NNELKFRLQAMEQQAQL+D       +Y +L +HL
Sbjct: 469 QRDSVGLTNQNNELKFRLQAMEQQAQLRDAK---YFWYVILYVHL 510

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545029|ref|XP_003540948.1| PREDICTED: uncharacterized protein LOC780560 [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/382 (60%), Positives = 277/382 (72%), Gaps = 31/382 (8%)

Query: 42  LDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLP 101
           LDSLPPLSPS    S   S +    V +++R V+S  L  PSP +R  NN+    +  LP
Sbjct: 99  LDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRTLNNS----NLPLP 154

Query: 102 PRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVE 161
           PR+ HRRS+SDIP GFS ++QSS  LIP+ +  +  KP QLVK+E+ W+          E
Sbjct: 155 PRKAHRRSNSDIPFGFSTVLQSSPPLIPLRNPVSA-KPAQLVKRETPWDR---------E 204

Query: 162 GMGERKSEE-DVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRASGSKTNGCES 213
           G GE+KS E +V DDLF+ YMNL++ D LNSS T+DK       D+DSRASG+KTNG +S
Sbjct: 205 GSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGGENRDDLDSRASGTKTNGGDS 264

Query: 214 SDNEVESRVYGRSSSGIL---SEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDE 270
           SDNE ES V      G+    +EKREG+KRSA G+IAPT RH RSVSMDS++G L FD+E
Sbjct: 265 SDNEAESSVNESGDGGVRQGGNEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFDEE 324

Query: 271 SLRLPPG-GQ----LSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPK 324
           S +LPP  GQ    +SP    DGN A  SLEF NGEF+  ELKKI ANEKLAEIAL DPK
Sbjct: 325 SPKLPPSPGQRSALMSPAGGIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALIDPK 384

Query: 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNE 384
           RAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+LQRDSAGLT++N+E
Sbjct: 385 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSE 444

Query: 385 LKFRLQAMEQQAQLKDGINSFL 406
           LKFRLQ+MEQQA+L+D +N  L
Sbjct: 445 LKFRLQSMEQQAKLRDALNEAL 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461635|ref|XP_004148547.1| PREDICTED: uncharacterized protein LOC101215703 [Cucumis sativus]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/455 (54%), Positives = 298/455 (65%), Gaps = 61/455 (13%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS-----------SHYRPL-------LDSL 45
           D+N+R GIPP  PN+     IS P+S + +             +H R L       LDSL
Sbjct: 58  DNNRRIGIPPC-PNSPQVPPIS-PYSQIPVSRPMNQHSYNSVPTHSRSLSQPSFFSLDSL 115

Query: 46  PPLSPSMSSFSDPNSGNNTTSVCID----ERVVNSLGLSIPSPVNRVTNNNGSRVSENLP 101
           PPLSPS   F D  S +N+  V  D    +R  +S  L  PSP  R    N S++S+ LP
Sbjct: 116 PPLSPS--PFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRA---NSSKMSDALP 170

Query: 102 PRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQ------LVKQESEW----NN 151
           PR+ HRRS+SDIP G S+MIQS   ++P    G +E+         + KQ S++     +
Sbjct: 171 PRKAHRRSNSDIPFGLSSMIQSPP-VLPFSGSGGLERSTSSKENAGIFKQASQFVKREPS 229

Query: 152 VKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRAS 204
           ++K    ++EGMGE+KSE D  DDLF+ YMNL+NID  NSS T DK       D+DSR S
Sbjct: 230 LEKSIDNHMEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSVTNDKNGHENREDLDSRGS 289

Query: 205 GSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVSM 258
           G+KT G ESSDNE ES V     +  +      +EKREGIKR+A GDIAP  RH RS+SM
Sbjct: 290 GTKTGG-ESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISM 348

Query: 259 DSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWA 311
           DS+MG L F DES ++PP       GQLS  N  DGN    SLEF NGEF+ AELKKI A
Sbjct: 349 DSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMA 408

Query: 312 NEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTIL 371
           N+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+L
Sbjct: 409 NDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 468

Query: 372 QRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406
           QRDS GLT++NNELKFRLQAMEQQAQL+D +N  L
Sbjct: 469 QRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEAL 503

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744714|emb|CBI37976.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/325 (66%), Positives = 239/325 (73%), Gaps = 46/325 (14%)

Query: 95  RVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKK 154
           RV ENLPPR+ HRRSSSDIP GFS+++QSS  LIP+   GA+E                 
Sbjct: 2   RVGENLPPRKAHRRSSSDIPFGFSSIMQSSPPLIPLRGSGALE----------------- 44

Query: 155 DASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRASGSK 207
              RN EGMGERKSE +V DDL + YMNL+NID LNS  TE+K       D+DSRASG+K
Sbjct: 45  ---RNAEGMGERKSEGEVVDDLLSAYMNLDNIDALNSPGTEEKNGTENREDLDSRASGTK 101

Query: 208 TNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPF 267
           TNG +SSDNE ES              REG+KRSA GDIAPT RH RSVSMDS+MG + F
Sbjct: 102 TNGGDSSDNEAES-------------SREGVKRSAGGDIAPTTRHYRSVSMDSFMGKMNF 148

Query: 268 DDESLRLPPG-----GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALS 321
            DES +L P      GQLSP N  DGN A  SLEF NGEF+ AELKKI ANEKLAEIAL+
Sbjct: 149 GDESPKLLPSPGTRPGQLSPSNSMDGNSATFSLEFGNGEFSGAELKKIMANEKLAEIALT 208

Query: 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381
           DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+LQRDSAGLTS+
Sbjct: 209 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQ 268

Query: 382 NNELKFRLQAMEQQAQLKDGINSFL 406
           NNELKFRLQAMEQQAQL+D +N  L
Sbjct: 269 NNELKFRLQAMEQQAQLRDALNEAL 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2047082	525	AT2G21230 "AT2G21230" [Arabido	0.800	0.634	0.527	6.8e-79
TAIR|locus:2141826	553	AT4G38900 "AT4G38900" [Arabido	0.737	0.555	0.514	3.1e-67
TAIR|locus:2061340	398	AT2G31370 [Arabidopsis thalian	0.281	0.293	0.663	1.2e-37
TAIR|locus:2198856	423	AT1G06070 "AT1G06070" [Arabido	0.269	0.264	0.651	2.7e-36
TAIR|locus:2061908	367	AT2G40620 "AT2G40620" [Arabido	0.346	0.392	0.558	4.6e-34
TAIR|locus:2031123	341	VIP1 "VIRE2-interacting protei	0.367	0.448	0.502	3.7e-32
TAIR|locus:2033123	337	bZIP52 "AT1G06850" [Arabidopsi	0.305	0.376	0.596	9.8e-32
TAIR|locus:2057300	294	UNE4 "unfertilized embryo sac	0.367	0.520	0.405	4.6e-25
TAIR|locus:2056442	262	AT2G13150 [Arabidopsis thalian	0.427	0.679	0.362	1.4e-23
TAIR|locus:2057030	264	AT2G12900 "AT2G12900" [Arabido	0.415	0.655	0.308	5.8e-18

TAIR|locus:2047082 AT2G21230 "AT2G21230" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 190/360 (52%), Positives = 245/360 (68%)

Query:    64 TTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVS---ENLPPRRGHRRSSSDIPLGFSAM 120
             + SV ++E+       S+P     + +++ SR +   ENLPPR+ HRRS+SD+  GFS+M
Sbjct:    99 SVSVSVEEKTGAGFSPSLPPSPFTMCHSSSSRNAGDGENLPPRKSHRRSNSDVTFGFSSM 158

Query:   121 IQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGE-RKSEEDVA-DDLFN 178
             +  + +  P+ S   +E+ I   +  S+W+N+ K   R  EG  + RK E + A DD+F 
Sbjct:   159 MSQNQKSPPLSS---LERSIS-GEDTSDWSNLVKKEPR--EGFYKGRKPEVEAAMDDVFT 212

Query:   179 EYMNLENIDTLNSSCTED--------KDMDS-RASGSK-TNGCESSDNEVESRVYGRSSS 228
              YMNL+NID LNS   ED        ++M+S R SG+K TNG  SSD+E +S   G    
Sbjct:   213 AYMNLDNIDVLNSFGGEDGKNGNENVEEMESSRGSGTKKTNGGSSSDSEGDSSASGNVKV 272

Query:   229 GILSEKREGIKRSACGDIAPTVRHCRSVSMDS-YMGNLPFDDES-LRLPPGG--QLSPGN 284
               LS    G+KR A GDIAPT RH RSVSMDS +MG L F DES L+LPP    ++SP N
Sbjct:   273 A-LSSSSSGVKRRAGGDIAPTGRHYRSVSMDSCFMGKLNFGDESSLKLPPSSSAKVSPTN 331

Query:   285 PSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERK 343
               +GN +  S+EF N EF  AE+KKI A+EKLAEI ++DPKR KRILANR SAARSKERK
Sbjct:   332 SGEGNSSAYSVEFGNSEFTAAEMKKIAADEKLAEIVMADPKRVKRILANRVSAARSKERK 391

Query:   344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGIN 403
              RY++ELE KVQTLQTEATTLSAQ+T LQRDS GLT++N+ELKFRLQAMEQQAQL+DG++
Sbjct:   392 TRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQNSELKFRLQAMEQQAQLRDGMH 451

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2141826 AT4G38900 "AT4G38900" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 174/338 (51%), Positives = 219/338 (64%)

Query:    89 TNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAI----EKPIQLVK 144
             T+++  RV E+LPPR+ HRRS+SDIP GF++M     + +     G       K    VK
Sbjct:   152 TSSSSLRVGESLPPRKSHRRSNSDIPSGFNSMPLIPPRPLERSFSGGECADWSKSNPFVK 211

Query:   145 QESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDS-RA 203
             +ES   + +++     E M +  S     +++  + +N    D   +      DM+S RA
Sbjct:   212 KES---SCEREGVGEREAMDDLFSAYMNLENI--DVLNSSEADDSKNGNENRDDMESSRA 266

Query:   204 SGSKTNGCES---SDNEVESRVYGRSSSGILSEKREGIKRSACG-DIAPTVRHCRSVSMD 259
             SG+KTNG ++   S +  ES     +SSG   EKRE +KR A G DIAPT RH RSVS+D
Sbjct:   267 SGTKTNGSDTEGESSSVNESANNNMNSSG---EKRESVKRRAAGGDIAPTTRHYRSVSVD 323

Query:   260 S-YMGNLPFDDESLRLPPG-GQLS----PGNPSDGNL-AKMSLEFN-GEFNDAELKKIWA 311
             S +M  L F DESL+ PP  G +S    P N  DGN  A  S+EFN GEF  AE+KKI A
Sbjct:   324 SCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMA 383

Query:   312 NEKLAEIALSDPKRAKR------ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLS 365
             N+KLAE+A+SDPKR KR      ILANRQSAARSKERKMRYI ELE KVQTLQTEATTLS
Sbjct:   384 NDKLAEMAMSDPKRVKRNDPLFRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLS 443

Query:   366 AQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGIN 403
             AQ+T+LQRD  GLT++NNELKFRLQAMEQQA+L+D +N
Sbjct:   444 AQLTLLQRDMMGLTNQNNELKFRLQAMEQQARLRDALN 481

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2061340 AT2G31370 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 79/119 (66%), Positives = 93/119 (78%)

Query:   287 DG--NLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKM 344
             DG  N+ +M +  N + +  + KK  +  KLAE+AL DPKRAKRI ANRQSAARSKERK 
Sbjct:   164 DGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKT 223

Query:   345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGIN 403
             RYI ELE+KVQTLQTEATTLSAQ+T+LQRD+ GLT ENNELK RLQ MEQQ  L+D +N
Sbjct:   224 RYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELN 282

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2198856 AT1G06070 "AT1G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 73/112 (65%), Positives = 90/112 (80%)

Query:   292 KMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELE 351
             +M +  N + +  + KK  +  KL+E+AL DPKRAKRI ANRQSAARSKERKMRYI+ELE
Sbjct:   180 EMLMSGNEDVSGVDSKKAISAAKLSELALIDPKRAKRIWANRQSAARSKERKMRYIAELE 239

Query:   352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGIN 403
             +KVQTLQTEAT+LSAQ+T+LQRD+ GL  ENNELK R+Q MEQQ  L+D +N
Sbjct:   240 RKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTMEQQVHLQDALN 291

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2061908 AT2G40620 "AT2G40620" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 81/145 (55%), Positives = 100/145 (68%)

Query:   259 DSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEI 318
             DS   + P  D       GG    GN    +   +S++ +      E KK  A +KLAE+
Sbjct:    86 DSAGPSAPRSDNPFSAENGGA-EAGNSRPRHRHSLSVDGSSTLESIEAKKAMAPDKLAEL 144

Query:   319 ALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
              + DPKRAKRI+ANRQSAARSKERK RYI ELE+KVQTLQTEATTLSAQ+++ QRD+ GL
Sbjct:   145 WVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGL 204

Query:   379 TSENNELKFRLQAMEQQAQLKDGIN 403
             +SEN ELK RLQ MEQQA+L+D +N
Sbjct:   205 SSENTELKLRLQVMEQQAKLRDALN 229

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2031123 VIP1 "VIRE2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 84/167 (50%), Positives = 106/167 (63%)

Query:   251 RHCRSVSMDS-YMGNLPFDDESLRLPPGGQLSPGN-------PSDGNLAKMSLEFNGEF- 301
             RH RS S+DS +  +L   +E       G+   GN         DG ++  S        
Sbjct:   109 RHVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILA 168

Query:   302 ----NDAELKKI-WANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQT 356
                  D+  K +    ++LAE+AL DPKRAKRILANRQSAARSKERK+RY  ELE+KVQT
Sbjct:   169 SVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQT 228

Query:   357 LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGIN 403
             LQ EATTLSAQVT+LQR ++ L +EN  LK RLQA+EQQA+L+D +N
Sbjct:   229 LQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALN 275

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0051019 "mitogen-activated protein kinase binding" evidence=IPI

GO:0008272 "sulfate transport" evidence=IMP

GO:0009970 "cellular response to sulfate starvation" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2033123 bZIP52 "AT1G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 77/129 (59%), Positives = 93/129 (72%)

Query:   275 PPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQ 334
             PP     P +    ++      + G+  DA  KK    EKL+E+   DPKRAKRILANRQ
Sbjct:   103 PPPPSSRPRHRHSNSVDAGCAMYAGDIMDA--KKAMPPEKLSELWNIDPKRAKRILANRQ 160

Query:   335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394
             SAARSKERK RYI ELE+KVQ+LQTEATTLSAQ+T+ QRD+ GL +EN ELK RLQAMEQ
Sbjct:   161 SAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLANENTELKLRLQAMEQ 220

Query:   395 QAQLKDGIN 403
             QAQL++ +N
Sbjct:   221 QAQLRNALN 229

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2057300 UNE4 "unfertilized embryo sac 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 69/170 (40%), Positives = 104/170 (61%)

Query:   237 GIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGN-PS----DGNLA 291
             G+K+ A  DI P  RH RSVSMDS + +L      L+L P    SPGN PS    DG+  
Sbjct:    68 GVKKIAPKDIGPLKRHYRSVSMDSCLSDL------LKLTP----SPGNTPSSRLVDGDQN 117

Query:   292 KMSLEFNG-EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISEL 350
                LEF+  ++ D EL KI  + KL E+AL DPK  +RIL NR+SAA  K++K++Y+  L
Sbjct:   118 ASRLEFDANDYTDDELNKIAKSNKLKEVAL-DPKEVRRILKNRESAAHLKQKKLQYMINL 176

Query:   351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD 400
             E ++  ++ E  ++  ++ +L+ D   + +E  E+  R+++ME QAQL+D
Sbjct:   177 EHRINFVENENASIFEKIKLLENDKTMMMNEKKEIMIRIESMEIQAQLRD 226

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2056442 AT2G13150 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 70/193 (36%), Positives = 109/193 (56%)

Query:   212 ESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDES 271
             ES D+ +  RV  +S    L  KR   K     DI P  RH RS+S+DS + +L      
Sbjct:    50 ESRDSSI--RVKKKSLLPPLCVKRRAPK----DDIEPFKRHYRSLSVDSCLSDL------ 97

Query:   272 LRLPPG-GQLSPGNPSDGNLAKMSLEFNGE-FNDAELKKIWANEKLAEIALSDPKRAKRI 329
             L+LPP    +S     DG      LEF+   + D EL KI  + KL E+A SDPK  +RI
Sbjct:    98 LKLPPSPNNVSSSRSVDGEQNASELEFDTSVYTDDELNKIAKSTKLKEVA-SDPKEVRRI 156

Query:   330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389
             L N++SAARSK++K++Y+  LE K+  L+ +  ++  ++ +L+ D     +E  E+  R+
Sbjct:   157 LKNQESAARSKQKKLQYMINLELKINFLENKNASIFEKIKLLENDKTMRMNEKKEIMIRI 216

Query:   390 QAMEQQAQLKDGI 402
             +++EQ A+L+D +
Sbjct:   217 ESLEQHAELRDAL 229

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2057030 AT2G12900 "AT2G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 58/188 (30%), Positives = 105/188 (55%)

Query:   228 SGILSEKREGIKRSACGDIAPTVRHCRSVSMDS--YMGNLPFD--DESLRLPPGGQLSPG 283
             SG  S  +  +  S+   ++P+    R  S+ S  +  + P +  D S+++     L P 
Sbjct:    11 SGSRSMTQPSLASSSLPPLSPSSSTFRRNSLPSMSFSPSAPVESRDSSIKVNKNPSLPP- 69

Query:   284 NPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIA--------LSDPKRAKRILANRQ 334
                DG      LEF + ++ D EL KI  + KL +IA        +SDPK+ +RIL NR+
Sbjct:    70 -LVDGEEDASWLEFGSSDYTDDELNKIAKSTKLQDIAKSTKLQEIVSDPKKVRRILKNRE 128

Query:   335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394
              AA SK+RK++Y+ +LE +++ L+ +   +  ++ +L++D   L +E  E+  +++++EQ
Sbjct:   129 LAASSKQRKLKYMIDLEHRIKFLENKNALIFEKIKLLEKDKTILMNEKKEITIQIESLEQ 188

Query:   395 QAQLKDGI 402
             QAQL+D +
Sbjct:   189 QAQLRDAL 196

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00041262 hypothetical protein (507 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-15
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	3e-07
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-05
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	7e-04
pfam08614	194	pfam08614, ATG16, Autophagy protein 16 (ATG16)	0.002

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381
           D KR +R   NR++A RS+ERK   I ELE+KV+ L+ E   L  ++  L+R+   L SE
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 382 NNE 384
             E
Sbjct: 63  LEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN 382
           KR +R   NR++A RS+ RK  YI ELE+KV+ L+ E  TL +++  L+++ A L SEN
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRD 374
            D  R +R   N ++A RS+E+K +   ELE++V+ L+ E   L  +V  L+++
Sbjct: 2   DDEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQV 368
            RA++   NR++A RS+ RKM  + +LE KV+ L +E + L  +V
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEV 46

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16)

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 311 ANEKLAEIALSDPKRAKRILANRQS-AARSKERKMRYISELEQKVQTLQTEATTLSAQVT 369
             E+L        K    + +   S     ++ +   + E E+  +TLQ E  +L+ ++ 
Sbjct: 103 ELEQLRREIQQLEKTIAELRSEITSLETEIRDLREE-LQEKEKDNETLQDELISLNIELN 161

Query: 370 ILQRDSAGLTSENNELKFR-LQAMEQQA 396
            L+     L  EN EL  R +    Q+A
Sbjct: 162 ALEEKLRKLQKENQELVERWMAKKGQEA 189

Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
smart00338	65	BRLZ basic region leucin zipper.	99.42
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.31
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.18
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.08
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.08
KOG3584	348	consensus cAMP response element binding protein an	98.93
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.91
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.21
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.76
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.42
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.31
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.18
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.94
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.48
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.44
PRK13169	110	DNA replication intiation control protein YabA; Re	96.39
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.29
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.95
PRK10884	206	SH3 domain-containing protein; Provisional	95.93
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.59
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.36
PRK09039	343	hypothetical protein; Validated	95.2
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.75
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	94.53
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.46
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.46
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	94.34
PRK11637	428	AmiB activator; Provisional	94.29
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.24
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.23
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	94.16
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	94.12
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.03
PRK10884	206	SH3 domain-containing protein; Provisional	93.96
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.86
PRK00295	68	hypothetical protein; Provisional	93.76
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	93.72
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.65
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.6
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.59
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	93.58
PRK00736	68	hypothetical protein; Provisional	93.5
PRK02793	72	phi X174 lysis protein; Provisional	93.5
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	93.49
COG4467	114	Regulator of replication initiation timing [Replic	93.47
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.46
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	93.44
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	93.44
PRK04325	74	hypothetical protein; Provisional	93.41
PRK11637	428	AmiB activator; Provisional	93.27
COG2433	652	Uncharacterized conserved protein [Function unknow	93.25
PRK02119	73	hypothetical protein; Provisional	93.21
PRK04406	75	hypothetical protein; Provisional	93.12
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.05
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	93.03
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.01
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.96
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.88
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.82
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	92.74
PRK00846	77	hypothetical protein; Provisional	92.47
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.46
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.43
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.38
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	92.31
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.3
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	92.26
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	92.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.1
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	92.0
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	91.83
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	91.8
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	91.77
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.67
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	91.54
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	91.29
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	91.18
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	91.01
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.84
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.83
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.82
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	90.74
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.57
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	90.54
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	90.47
PRK04863	1486	mukB cell division protein MukB; Provisional	90.24
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.24
KOG0288	459	consensus WD40 repeat protein TipD [General functi	90.19
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	90.15
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.97
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	89.69
PF00038	312	Filament: Intermediate filament protein; InterPro:	89.65
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	89.6
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.54
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.48
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	89.47
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.45
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	89.36
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	89.33
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.19
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.18
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.1
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.05
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	88.99
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.83
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.72
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	88.61
COG2433	652	Uncharacterized conserved protein [Function unknow	88.49
PRK05431	425	seryl-tRNA synthetase; Provisional	88.43
KOG1962	216	consensus B-cell receptor-associated protein and r	88.27
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	88.21
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	88.17
PF08537	323	NBP1: Fungal Nap binding protein NBP1; InterPro: I	88.15
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.08
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	88.04
PRK13169	110	DNA replication intiation control protein YabA; Re	87.77
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	87.77
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.75
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	87.66
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	87.53
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.44
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.9
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	86.88
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	86.87
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	86.64
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.63
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	86.6
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	86.58
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	86.57
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	86.4
PRK10698	222	phage shock protein PspA; Provisional	86.22
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.21
KOG4571	294	consensus Activating transcription factor 4 [Trans	86.15
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.68
PF15294	278	Leu_zip: Leucine zipper	85.66
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.66
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	85.63
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	85.53
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	85.46
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	85.33
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	85.25
PRK10803	263	tol-pal system protein YbgF; Provisional	84.92
PRK13922	276	rod shape-determining protein MreC; Provisional	84.84
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	84.83
PRK13922	276	rod shape-determining protein MreC; Provisional	84.81
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	84.71
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.61
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	84.59
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	84.55
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	84.44
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	84.36
smart00338	65	BRLZ basic region leucin zipper.	84.21
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.09
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	83.58
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	83.55
PF14661	247	HAUS6_N: HAUS augmin-like complex subunit 6 N-term	83.54
KOG1962	216	consensus B-cell receptor-associated protein and r	83.51
PRK00888	105	ftsB cell division protein FtsB; Reviewed	83.49
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	83.39
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	83.21
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	83.19
KOG3119	269	consensus Basic region leucine zipper transcriptio	82.99
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	82.59
PRK00888	105	ftsB cell division protein FtsB; Reviewed	82.39
PF15030	277	DUF4527: Protein of unknown function (DUF4527)	82.32
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.26
KOG4807	593	consensus F-actin binding protein, regulates actin	82.24
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	82.15
KOG0933	1174	consensus Structural maintenance of chromosome pro	82.08
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	82.05
PRK09039	343	hypothetical protein; Validated	81.9
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	81.88
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	81.8
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	81.74
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	81.74
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	81.65
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.58
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	81.53
PRK03918	880	chromosome segregation protein; Provisional	81.51
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.48
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	81.38
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	81.32
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.25
PRK05431	425	seryl-tRNA synthetase; Provisional	81.23
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	81.19
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	81.13
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	81.1
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	81.1
KOG3650	120	consensus Predicted coiled-coil protein [General f	81.09
COG4372	499	Uncharacterized protein conserved in bacteria with	81.07
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	80.92
PRK02119	73	hypothetical protein; Provisional	80.9
PRK04406	75	hypothetical protein; Provisional	80.7
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	80.53
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	80.45
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	80.34
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	80.33

>smart00338 BRLZ basic region leucin zipper

Probab=99.42  E-value=1e-12  Score=101.91  Aligned_cols=63  Identities=41%  Similarity=0.534  Sum_probs=58.6

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN  383 (416)
Q Consensus       321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~  383 (416)
                      .|+|+.+|+++||+||++||+||+.|+.+||.+|+.|+.+|..|..++..|+.++..|..++.
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999999999999999998888888877653

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.31  E-value=1.3e-11  Score=95.67  Aligned_cols=61  Identities=41%  Similarity=0.632  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN  382 (416)
Q Consensus       322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN  382 (416)
                      +.|+.+|+++||+||+++|+||+.|+.+||.+|..|+.+|..|..++..|..++..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4578899999999999999999999999999999999999999999999999999998887

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.18  E-value=1.8e-10  Score=111.52  Aligned_cols=82  Identities=26%  Similarity=0.390  Sum_probs=74.0

Q ss_pred             hhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          313 EKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       313 ~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      .+|.-+. -++|-.||+||||.+|+-+|.|||+.++++|..|..|..||..|..+...|++.+..|+.+|.+|..+|+.+
T Consensus        59 ~RL~HLS-~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~  137 (292)
T KOG4005|consen   59 RRLDHLS-WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL  137 (292)
T ss_pred             HhhcccC-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3444442 478999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHH
Q 014879          393 EQQ  395 (416)
Q Consensus       393 EqQ  395 (416)
                      .|.
T Consensus       138 ~~~  140 (292)
T KOG4005|consen  138 RQE  140 (292)
T ss_pred             HHH
Confidence            654

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.08  E-value=5.6e-10  Score=84.40  Aligned_cols=53  Identities=40%  Similarity=0.585  Sum_probs=48.6

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRD  374 (416)
Q Consensus       321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre  374 (416)
                      .|+++.||. +||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.+
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            357788888 99999999999999999999999999999999999999988754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.08  E-value=1.8e-10  Score=120.88  Aligned_cols=63  Identities=38%  Similarity=0.579  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      ||..|||+||+||..||+|||+|+..||.+++.|..||..|+++...|.+++..|..||.+||
T Consensus       281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            677899999999999999999999999999999999999999999999999999999999986

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.93  E-value=1.5e-09  Score=107.54  Aligned_cols=53  Identities=26%  Similarity=0.457  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      .||.-|++||||+|+.+|+|||+|+.+||.+|..|+++|..|-++|..|..-+
T Consensus       290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY  342 (348)
T KOG3584|consen  290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY  342 (348)
T ss_pred             hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence            58888999999999999999999999999999999999999999998887544

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.91  E-value=1.6e-09  Score=112.30  Aligned_cols=64  Identities=30%  Similarity=0.436  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      .-||+||+|+|.+||+.||+|||+||+.||.+|....+||++|..|+..|+.++..|..+.+.|
T Consensus       249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl  312 (472)
T KOG0709|consen  249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL  312 (472)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence            4599999999999999999999999999999999999999999999888776555555554433

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.21  E-value=1.8e-08  Score=83.70  Aligned_cols=79  Identities=25%  Similarity=0.419  Sum_probs=57.8

Q ss_pred             ChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       302 s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      +-.|+++.+  ..|.+--..+-|.+||.++||.+|++||.||+.++.+||.++..|+.+...|..++..++.+...+..+
T Consensus        10 ~v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~   87 (92)
T PF03131_consen   10 SVREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRK   87 (92)
T ss_dssp             -HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_pred             CHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666  444444444568999999999999999999999999999999888887777777766665554444433


Q ss_pred             H
Q 014879          382 N  382 (416)
Q Consensus       382 N  382 (416)
                      +
T Consensus        88 ~   88 (92)
T PF03131_consen   88 L   88 (92)
T ss_dssp             H
T ss_pred             H
Confidence            3

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.76  E-value=9.8e-05  Score=72.89  Aligned_cols=48  Identities=33%  Similarity=0.529  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       328 RiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      ..++||++|.+||+||.++|..||.+|..|..+|..|...+..|.+.+
T Consensus       210 krlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v  257 (279)
T KOG0837|consen  210 KRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV  257 (279)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            368999999999999999999999999999999988887777655433

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.42  E-value=0.001  Score=66.54  Aligned_cols=58  Identities=21%  Similarity=0.258  Sum_probs=45.1

Q ss_pred             ccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          320 LSDPKRAKRI-LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAG  377 (416)
Q Consensus       320 l~DpKR~KRi-LkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~  377 (416)
                      .+++|+.+|+ +.|..+|.|.|+||++-.+.|+.+++.|+.+|.+|+.|+..|++++.-
T Consensus       222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y  280 (294)
T KOG4571|consen  222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRY  280 (294)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666664 455567999999999999999999999988888888887776644433

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.31  E-value=0.00053  Score=74.08  Aligned_cols=86  Identities=27%  Similarity=0.310  Sum_probs=66.3

Q ss_pred             hHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN  382 (416)
Q Consensus       303 ~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN  382 (416)
                      -++.+..++.-+|.|.-+.=-+=+||.=|||.+|+++|+||..-|..||..|..|+.|..+|..+-       ..+.++.
T Consensus       469 ~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L  541 (604)
T KOG3863|consen  469 VDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTL  541 (604)
T ss_pred             HHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            444555556666665444445678888999999999999999999999999999999887765544       3456777


Q ss_pred             HHHHHHHHHHHHH
Q 014879          383 NELKFRLQAMEQQ  395 (416)
Q Consensus       383 ~ELK~RLqaLEqQ  395 (416)
                      .++|++|..|.+.
T Consensus       542 ~~~kqqls~L~~~  554 (604)
T KOG3863|consen  542 GVMKQQLSELYQE  554 (604)
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888888765

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.18  E-value=0.0032  Score=56.94  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=56.1

Q ss_pred             ChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       302 s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      |--|+++-+-.-.-.||.  -.|..||-|+||=.|+-+|-|+.+.-.+||.+-..|       ..||..|.+++..|..|
T Consensus        33 SVReLNr~LrG~~reEVv--rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L-------~qqv~~L~~e~s~~~~E  103 (135)
T KOG4196|consen   33 SVRELNRHLRGLSREEVV--RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAEL-------QQQVEKLKEENSRLRRE  103 (135)
T ss_pred             hHHHHHHHhcCCCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            344555544433334443  358888999999999999999999888887755554       44555555555556666


Q ss_pred             HHHHHHHHHHHHH
Q 014879          382 NNELKFRLQAMEQ  394 (416)
Q Consensus       382 N~ELK~RLqaLEq  394 (416)
                      -.-|+.+.++|..
T Consensus       104 ~da~k~k~e~l~~  116 (135)
T KOG4196|consen  104 LDAYKSKYEALQN  116 (135)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666644

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.94  E-value=0.0049  Score=60.55  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=50.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      .|++-..|.-+|=++|+|||.+.++-..++..+|..|+.||..|+.+|..|+.++..|..-
T Consensus       191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~  251 (269)
T KOG3119|consen  191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL  251 (269)
T ss_pred             CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4454455556899999999999999999999999999999999999998877666655543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.48  E-value=0.014  Score=50.81  Aligned_cols=50  Identities=34%  Similarity=0.443  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ..+.+||.++..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45789999999999999999999999999999999999999999999876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.44  E-value=0.071  Score=47.38  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      +.++|+.++..+..++..|...+..|+.++..+..+...++.+...++.+.+-....+...++|+++|
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl  120 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL  120 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444433333333333333333333333334444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.39  E-value=0.016  Score=50.80  Aligned_cols=50  Identities=30%  Similarity=0.436  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ..+..||.++..+..+...|+.+++.|..+++.|..||..|+.+|..+++
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35789999999999999999999999999999999999999999998854

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.29  E-value=0.1  Score=42.61  Aligned_cols=51  Identities=25%  Similarity=0.343  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      +-++.||.||+.+-...+.|..++..|+.++..|..+|.+|+...+.|.+.
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e   54 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE   54 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999888888888888888777654

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.95  E-value=0.11  Score=41.98  Aligned_cols=65  Identities=20%  Similarity=0.206  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL~  414 (416)
                      .||..|..|+..+..+..++...+..+..|..|+...-.+|+..... .+|+ +.+++|+.|++.++
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk-~E~e~L~~el~~~r   67 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLK-EENEALRKELEELR   67 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence            47888899999999999999998888888988888888887765444 5677 77888888877654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.93  E-value=0.095  Score=50.12  Aligned_cols=13  Identities=31%  Similarity=0.424  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q 014879          357 LQTEATTLSAQVT  369 (416)
Q Consensus       357 LqsENs~Ls~Qlt  369 (416)
                      |+.+|.+|..+++
T Consensus       137 L~~~n~~L~~~l~  149 (206)
T PRK10884        137 LKEENQKLKNQLI  149 (206)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.59  E-value=0.27  Score=45.79  Aligned_cols=69  Identities=22%  Similarity=0.221  Sum_probs=55.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      .+.+++..+.+.+..-+.-.......|.+++.-++.|+.|...|..++..++.++..|..||.+|-.|.
T Consensus       113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666777888999999999999999999999999999999999999997664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.36  E-value=0.79  Score=41.88  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          318 IALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       318 lAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      -+..=++-+.....|++.+-+--+-+++.|..|+.++..+..+...|...+..+..+...|..+-.+.+.||..|+.-
T Consensus        25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333345566667889999999999999999999999999999999999999988888888888888888888877754

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK09039 hypothetical protein; Validated

Probab=95.20  E-value=0.53  Score=47.92  Aligned_cols=66  Identities=26%  Similarity=0.234  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhc
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--------AQLKDGINSFLLFYYLLLLH  415 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--------aqLrdALnEaL~~EvqrL~q  415 (416)
                      |+.++..++.+.+....++..|+++...|..+...|...|.+.|++        +.|+..|+.+|.++++.|.+
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~  194 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR  194 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455555555555555555555555555554443        35566777777776666654

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.75  E-value=0.51  Score=38.60  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      .+=..+..|+.|+..|..++..|..++..|..||..|+..-.+.
T Consensus        15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~   58 (72)
T PF06005_consen   15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555666666665444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=94.53  E-value=0.85  Score=45.55  Aligned_cols=89  Identities=24%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             hhhHhhhhccCHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          312 NEKLAEIALSDPKRAKRILANRQSA--ARSKERKMRY-ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR  388 (416)
Q Consensus       312 ~~~LaElAl~DpKR~KRiLkNRESA--rRSReRKk~Y-leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R  388 (416)
                      =+.|+--...+.||+|-..+-.-+-  ++.|+-+++| |.+|+.+-+.|+.||..|+++...|-.+++.|..+..+|++.
T Consensus        61 L~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~  140 (292)
T KOG4005|consen   61 LDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE  140 (292)
T ss_pred             hcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444456788888665543332  3344556665 689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014879          389 LQAMEQQAQLKD  400 (416)
Q Consensus       389 LqaLEqQaqLrd  400 (416)
                      |-.+.||.+...
T Consensus       141 l~~~~~~~~~~~  152 (292)
T KOG4005|consen  141 LAELKQQQQHNT  152 (292)
T ss_pred             HHhhHHHHHHhh
Confidence            999998877663

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.46  E-value=0.35  Score=39.22  Aligned_cols=50  Identities=22%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .++-|.++++..+.+|..|..+-.....+......+|.+|+.++.+|.++
T Consensus        13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen   13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666555555666666666666666655544

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.46  E-value=0.28  Score=39.73  Aligned_cols=46  Identities=24%  Similarity=0.367  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      |+.|=...+.|+.||..|..++..++.+...|...|..-+.||++|
T Consensus         9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555566666666666666666666666666555666555

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=94.34  E-value=0.3  Score=45.72  Aligned_cols=53  Identities=28%  Similarity=0.411  Sum_probs=43.5

Q ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQ---KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       344 k~YleELE~---KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      ..|+..|..   ..+.++.||..|..+++.|+.++..|..||..|+.+++.+++..
T Consensus        86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY  141 (161)
T TIGR02894        86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY  141 (161)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556654   47788889999999999999999999999999999998887764

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK11637 AmiB activator; Provisional

Probab=94.29  E-value=1.5  Score=45.31  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      +..+...|......+..-...+.+|+...+.++.+...|..+....+.....|..+..++...|..|+++
T Consensus       172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~  241 (428)
T PRK11637        172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRAN  241 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334444444444444444444444444444444444444444444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.24  E-value=0.93  Score=43.58  Aligned_cols=69  Identities=25%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME---------------------QQAQLKDGINSF  405 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE---------------------qQaqLrdALnEa  405 (416)
                      ..-|..+|..|+.||.+|......|+.++..|..++..|+.+|-..+                     ....--.++++-
T Consensus        97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee  176 (193)
T PF14662_consen   97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE  176 (193)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999988872211                     111222377788


Q ss_pred             HHHHHHHhhc
Q 014879          406 LLFYYLLLLH  415 (416)
Q Consensus       406 L~~EvqrL~q  415 (416)
                      |+.|+-||++
T Consensus       177 LR~e~s~LEe  186 (193)
T PF14662_consen  177 LRLEKSRLEE  186 (193)
T ss_pred             HHHHHHHHHH
Confidence            8888888863

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.23  E-value=0.6  Score=37.84  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      +..||.||..|-.....|..++..|..+...+..|+..|..+.+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne   45 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE   45 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888854443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=94.16  E-value=1.3  Score=37.27  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +++.+.|.+=+++-.-|.-+.+-..+||.+|+.|....+.|-.++.....++..|..-|.++..||...
T Consensus        11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen   11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777777777777999999999999999999999999999999999999999999764

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=94.12  E-value=0.24  Score=39.60  Aligned_cols=52  Identities=29%  Similarity=0.289  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      +.|.+||.++..++.-...|...++..+++...|..+.+.|..||..++...
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~   55 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPS   55 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5689999999999999999999999999999999999999999999987443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.03  E-value=0.72  Score=38.81  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      +-++.||.||+..-...+-|..+|..|..++..|..|+..+
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~   44 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA   44 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888776666666666666666666666665553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.96  E-value=1.2  Score=42.82  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ  397 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq  397 (416)
                      +...+|+.+++.+..+...|..++..|++++..+.+|+..|+.+++.+....+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555444444444333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.86  E-value=1.2  Score=47.13  Aligned_cols=73  Identities=26%  Similarity=0.326  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      |+++-+.++=+.-.++....++....||.+++.++++..++..++...+.+...+...+..+..+|+.|+.|.
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            5666665555555555566677788999999999999999999999999999999999999999999998886

>PRK00295 hypothetical protein; Provisional

Probab=93.76  E-value=0.46  Score=38.21  Aligned_cols=48  Identities=21%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      .|.+||.++...+.-...|...++..++++..|..+.+.|..||..++
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            499999999999999999999999999999999999999988888875

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=93.72  E-value=1.5  Score=48.37  Aligned_cols=70  Identities=27%  Similarity=0.347  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 014879          326 AKRILANRQSAARSKERKMRYISELEQKVQTLQ------------------------TEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       326 ~KRiLkNRESArRSReRKk~YleELE~KVq~Lq------------------------sENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      +.-.++|.+.--+-...+...|.+||.+++.++                        +.|..|+.|++.|+..+..|.++
T Consensus       103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne  182 (617)
T PF15070_consen  103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE  182 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            333445555554444566677777777666655                        45778889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014879          382 NNELKFRLQAMEQQ  395 (416)
Q Consensus       382 N~ELK~RLqaLEqQ  395 (416)
                      |.+|+..|++-...
T Consensus       183 ~~elt~~lq~Eq~~  196 (617)
T PF15070_consen  183 NMELTSALQSEQHV  196 (617)
T ss_pred             hhHhhHHHHHHHHH
Confidence            98888777764433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.65  E-value=2.7  Score=39.86  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ......+..+.+++.++..|+.+...+..++...+++...+..++...+..+.
T Consensus        56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555555555555544444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.60  E-value=2.5  Score=42.71  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879          336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH  415 (416)
Q Consensus       336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q  415 (416)
                      ...-.++..+.+.+||.+...|..|...|..+...++++-...-.+.+.++.++..++++.+.-.+..+....++.+|+.
T Consensus        55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555666677777777777777777777777766666777777777766666666655555666777777777764

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.59  E-value=3.5  Score=40.79  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      +..|+..++.++.+..+|..++..|..+...|..+...|+.++..++.
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555444444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.58  E-value=0.99  Score=40.83  Aligned_cols=12  Identities=33%  Similarity=0.614  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHH
Q 014879          384 ELKFRLQAMEQQ  395 (416)
Q Consensus       384 ELK~RLqaLEqQ  395 (416)
                      .|..||+.||.+
T Consensus        77 ~l~rriq~LEee   88 (143)
T PF12718_consen   77 QLNRRIQLLEEE   88 (143)
T ss_pred             HHHhhHHHHHHH
Confidence            344444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK00736 hypothetical protein; Provisional

Probab=93.50  E-value=0.48  Score=38.09  Aligned_cols=49  Identities=20%  Similarity=0.258  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ..|.+||.++..++.-...|...|+.-++++..|..+.+.|..||..++
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3599999999999999999999999999999999999999988887765

>PRK02793 phi X174 lysis protein; Provisional

Probab=93.50  E-value=0.46  Score=38.62  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      +.|.+||.++...+.-...|...|+..+++...|..+.+.|..||..++.
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            57899999999999999999999999999999999999999888887753

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=93.49  E-value=2.7  Score=39.95  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      -+-++.+|....+-+..+.+.+.+...||.++..-..++..+..++..|++....|..+
T Consensus        88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~  146 (190)
T PF05266_consen   88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ  146 (190)
T ss_pred             cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666667777777777777666444444444444444444444443

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=93.47  E-value=0.31  Score=43.25  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA--MEQQA  396 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa--LEqQa  396 (416)
                      ..+.+||.++-.|-+|...|++++..|-.+++.|.-||..|+.||..  ++..+
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~   61 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTA   61 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence            45789999999999999999999999999999999999999999987  55443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.46  E-value=0.37  Score=51.50  Aligned_cols=45  Identities=27%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQR-------DS-AGLTSENNELKFRLQAME  393 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqr-------e~-~~L~sEN~ELK~RLqaLE  393 (416)
                      +|+.+++.|..+|..|.++++.|++       +. ..|..+..+|.++.+.|.
T Consensus        70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~  122 (472)
T TIGR03752        70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLK  122 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3444444444444444444444433       32 233355555555555443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=93.44  E-value=1.1  Score=49.71  Aligned_cols=71  Identities=27%  Similarity=0.299  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD---GINSFLLFYYLLLLH  415 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd---ALnEaL~~EvqrL~q  415 (416)
                      +++..|..+++.|+.+...|..++..++++++....++..+..+|..++....-+.   .++..|+.||+.|++
T Consensus       241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG  314 (670)
T KOG0239|consen  241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG  314 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33899999999999999999999999999999999999999899988888777666   889999999999986

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.44  E-value=0.63  Score=38.73  Aligned_cols=45  Identities=27%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      |.-|.-.|..|..+|+.|..+...++.....|..||..||+.-..
T Consensus        20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~   64 (79)
T COG3074          20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG   64 (79)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555566666555544333

>PRK04325 hypothetical protein; Provisional

Probab=93.41  E-value=0.48  Score=38.70  Aligned_cols=48  Identities=21%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      .|.+||.+|...+.-...|...|+.-++++..|..+.+.|..||..++
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            499999999999999999999999999999999999999988887765

>PRK11637 AmiB activator; Provisional

Probab=93.27  E-value=2.9  Score=43.17  Aligned_cols=44  Identities=9%  Similarity=0.141  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      .+..|+.++..++.+...+..++..++.+...+..+..+++.+|
T Consensus        76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l  119 (428)
T PRK11637         76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ  119 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=0.66  Score=51.08  Aligned_cols=46  Identities=26%  Similarity=0.423  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ..+..|+.+|+.|+.||..|...+..+++++.+|..+..+++.++.
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888888888888888888888888888888777765543

>PRK02119 hypothetical protein; Provisional

Probab=93.21  E-value=0.53  Score=38.39  Aligned_cols=49  Identities=18%  Similarity=0.140  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ..|.+||.++...+.-...|...|+.-+++...|..+.+.|..||..++
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5689999999999999999999999999999999999888888887765

>PRK04406 hypothetical protein; Provisional

Probab=93.12  E-value=0.54  Score=38.63  Aligned_cols=49  Identities=12%  Similarity=0.126  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ..|.+||.++..++.-...|...++..++++..|..+.+.|..||..++
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4688999999999999999999999999999999988888888887764

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.05  E-value=0.84  Score=43.88  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK  399 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr  399 (416)
                      .|++|+.--+.|..||..|...+..+...+..|..|+..|+.+++.+.|-.+..
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a   62 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA   62 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777777777777777777777777777777777775544444

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=93.03  E-value=0.66  Score=38.88  Aligned_cols=49  Identities=27%  Similarity=0.324  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      ++|..++..||.....|..++...+.++..|..||.-|...|..|-...
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s   67 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSS   67 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5778899999999999999999999999999999999999999885443

The exact function is unknown.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.01  E-value=2.4  Score=47.42  Aligned_cols=44  Identities=14%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          329 ILANRQ-SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ  372 (416)
Q Consensus       329 iLkNRE-SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq  372 (416)
                      .|.||. ..-++|++=++-|..||+++...+..-+.|.+||...+
T Consensus       471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr  515 (697)
T PF09726_consen  471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER  515 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344443 55667777777778888877777776666666666554

; GO: 0016021 integral to membrane

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.96  E-value=5.2  Score=36.66  Aligned_cols=56  Identities=23%  Similarity=0.246  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          357 LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLL  412 (416)
Q Consensus       357 LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Evqr  412 (416)
                      |+.+...|...+..|..+...+..|+..|.+.++.+..+..--+.++.-+..-++.
T Consensus        57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~  112 (140)
T PF10473_consen   57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE  112 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33444444444444555555555566666555555555544333444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.88  E-value=4.8  Score=38.77  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      |+.++..|+.|...|..++..+++....+..+..+|+.++..++
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.82  E-value=1.6  Score=47.86  Aligned_cols=51  Identities=22%  Similarity=0.384  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      .+=+.|+.+++.+-+.+......|..++...+.++..|..+|.+||.+|..
T Consensus       276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~  326 (581)
T KOG0995|consen  276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL  326 (581)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999999999999999877643

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=92.74  E-value=1.8  Score=50.24  Aligned_cols=70  Identities=23%  Similarity=0.237  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          329 ILANRQSAARSKER----KMRY------ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL  398 (416)
Q Consensus       329 iLkNRESArRSReR----Kk~Y------leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL  398 (416)
                      +|+++..|+|.|.-    +..|      ..+...+++.|+.|...+..++..++..+..+...+..|+.+++.++...+.
T Consensus       415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~  494 (1041)
T KOG0243|consen  415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN  494 (1041)
T ss_pred             HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777776532    1222      2233344444444555555555555555554444445555554444444333

>PRK00846 hypothetical protein; Provisional

Probab=92.47  E-value=0.8  Score=38.16  Aligned_cols=50  Identities=18%  Similarity=0.083  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      .++|.+||.++...+.-...|...++..++....|..+.+.|+.||.+++
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35689999999999999999999999999999999999999999988886

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.46  E-value=3.1  Score=48.48  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          335 SAARSKERKMRYISELEQKV-QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       335 SArRSReRKk~YleELE~KV-q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ..+....+..+.|.+++.++ +.++.+..++..++..|++++..|..++..|+..++.+.+
T Consensus       369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~  429 (1074)
T KOG0250|consen  369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE  429 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555 4455555555555555555555555555555555554433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.43  E-value=1.6  Score=40.68  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL  413 (416)
                      ..|+.++..|..+...+..-+..|+-++..|..+++.|..++..|+.. ..|-+-+-+.-..|+.+|
T Consensus       126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m  192 (194)
T PF08614_consen  126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERM  192 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444455555555555555555555555443 344444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.38  E-value=2.9  Score=34.90  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      +-++.||.||++.-.-.+-|..++..|...+..|..|.+++....++|++
T Consensus         4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~   53 (79)
T COG3074           4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER   53 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence            34678888888776666666666666666666666666655555555554

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=92.31  E-value=0.43  Score=35.85  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          356 TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       356 ~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      +|+.+...|......|..++..|..||..|+.+++.|..
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666677777777777777777777777777766643

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.30  E-value=2.3  Score=47.44  Aligned_cols=42  Identities=21%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR  388 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R  388 (416)
                      -+-+..+.++|+.|...|+.++...++++..|+.|..+|+..
T Consensus       540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666777777888888877777777777777777766553

; GO: 0016021 integral to membrane

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=92.26  E-value=0.59  Score=50.08  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      -..+||++++.|+.|.+.|.++...+++++..|..||..|+.++.++
T Consensus        77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~  123 (475)
T PRK13729         77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL  123 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999999999999998888543

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=92.15  E-value=2.2  Score=35.04  Aligned_cols=52  Identities=25%  Similarity=0.394  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSA--------GLTSENNELKFRLQAMEQQAQL  398 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~--------~L~sEN~ELK~RLqaLEqQaqL  398 (416)
                      +.+.|..+..|+.||=.|.-+|-.|++...        .+..||-+||..+..|....+-
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~   61 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE   61 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999988776        4577888888888877666443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.10  E-value=7.3  Score=38.59  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 014879          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRD---------SAGLTSENNELKFRLQA  391 (416)
Q Consensus       321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre---------~~~L~sEN~ELK~RLqa  391 (416)
                      .-++-++.+..-.+.+.+.-.-++.-+++|+.+|..++.+.+.++.++..++..         +..|..|...++.|+.+
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~  107 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS  107 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            345566666677777777777778888888888888888888887777766543         34444555555555555


Q ss_pred             HHHH
Q 014879          392 MEQQ  395 (416)
Q Consensus       392 LEqQ  395 (416)
                      |+.+
T Consensus       108 le~e  111 (239)
T COG1579         108 LEDE  111 (239)
T ss_pred             HHHH
Confidence            4443

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=92.00  E-value=2.5  Score=36.05  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879          356 TLQTEATTLSAQVTILQR------DSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH  415 (416)
Q Consensus       356 ~LqsENs~Ls~Qlt~Lqr------e~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q  415 (416)
                      .+..+|..|..+|..|+.      +.+....||..|+.++..+..-.  ...-.|++-.||..|+.
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~   84 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD   84 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence            445566666666666664      45788899999998888776554  33567888889988863

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.83  E-value=5.6  Score=38.95  Aligned_cols=77  Identities=13%  Similarity=0.028  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      .+=+..-.+|.|++.....|..|-..+..+|....+++..|....+.++..-.......+........|+.||.+|+
T Consensus        25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444558899999999999999999988888888888888887777766665555554444445555566665554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=91.80  E-value=1  Score=38.84  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDG  401 (416)
Q Consensus       352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdA  401 (416)
                      ..+..++.+...+..++..++.++..+...|.+|-..++.|..+..-...
T Consensus         3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~   52 (106)
T PF05837_consen    3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE   52 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            34556667777777777777777777777777777777776665544433

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=91.77  E-value=1.8  Score=37.35  Aligned_cols=53  Identities=34%  Similarity=0.413  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTL--SAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK  399 (416)
Q Consensus       347 leELE~KVq~LqsENs~L--s~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr  399 (416)
                      +.+++.+++.++++...|  ...+..|+-+...+.-+-+.|..+|+.+..+..|-
T Consensus        44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344466666666666666  66666666666677777777777777776665543

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.67  E-value=7.4  Score=37.50  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       337 rRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      ...++.-.+.+..|+.+++.|+..|..|..+++.++++...|..+..++.
T Consensus        48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555555555555555555555555555555555443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=91.54  E-value=7  Score=34.57  Aligned_cols=84  Identities=18%  Similarity=0.299  Sum_probs=40.8

Q ss_pred             cChHHHHhhhhhhh-HhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          301 FNDAELKKIWANEK-LAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT  379 (416)
Q Consensus       301 ~s~~e~kKi~~~~~-LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~  379 (416)
                      .|..|++.++.++. +.++...-+ .++.+...++....+-+.=.+....++.++..+..+...+...+..|+.++..+.
T Consensus         4 lS~~eL~~Ll~d~~~l~~~v~~l~-~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~   82 (150)
T PF07200_consen    4 LSTEELQELLSDEEKLDAFVKSLP-QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE   82 (150)
T ss_dssp             -TTHHHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777664 444443222 2444445555555544444455555555555555555555555555555555555


Q ss_pred             HHHHHH
Q 014879          380 SENNEL  385 (416)
Q Consensus       380 sEN~EL  385 (416)
                      .+-..+
T Consensus        83 ~~~~~l   88 (150)
T PF07200_consen   83 QQQDEL   88 (150)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554444

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=91.29  E-value=5.2  Score=43.82  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSA  376 (416)
Q Consensus       329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~  376 (416)
                      +++-..........-+..++.|+..+...+.++..|..+...+.....
T Consensus       155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e  202 (546)
T PF07888_consen  155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSE  202 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=91.18  E-value=3.5  Score=39.20  Aligned_cols=57  Identities=26%  Similarity=0.293  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .+.++-..|.+||.++-.|+.+...+..+......++..|..+...|++.+..++.+
T Consensus       125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~  181 (190)
T PF05266_consen  125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE  181 (190)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555667777777777777777777666666666666666666666666665543

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=91.01  E-value=3.9  Score=41.61  Aligned_cols=71  Identities=13%  Similarity=0.030  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      ++-+++=..++..|+.||+.|......|++..+.|..+...=..+|.-||.|..---...+.|..|+.|++
T Consensus        52 KqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K  122 (307)
T PF10481_consen   52 KQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK  122 (307)
T ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555566677777777777777777777776666666666677777776555567778888887764

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.84  E-value=1.6  Score=46.96  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          357 LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       357 LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      |-.+..+++.++..|..++..|..||..|++|.+.+.+
T Consensus        64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~  101 (472)
T TIGR03752        64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ  101 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            33344444444444444444444455444444444433

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.83  E-value=2  Score=36.23  Aligned_cols=47  Identities=28%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      -|.=|.-+|..|+.+|..|..++..+......|..||..||+.-...
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W   65 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW   65 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            45556666777777777777777766666667777777776665555

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.82  E-value=6.2  Score=40.07  Aligned_cols=87  Identities=23%  Similarity=0.276  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 014879          327 KRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD------  400 (416)
Q Consensus       327 KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd------  400 (416)
                      .+.+.-|+--....+--.+|-.+||.++.+|++.|..|...+..|.-+...+......  +++|...|..+|+|      
T Consensus        27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~--q~~q~y~q~s~Leddlsqt~  104 (333)
T KOG1853|consen   27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED--QRVQFYQQESQLEDDLSQTH  104 (333)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            4566667777777777788888899888888888877766665554433333221111  12333333333433      


Q ss_pred             HHHHHHHHHHHHhhc
Q 014879          401 GINSFLLFYYLLLLH  415 (416)
Q Consensus       401 ALnEaL~~EvqrL~q  415 (416)
                      |+-|.|+.-|..|+|
T Consensus       105 aikeql~kyiReLEQ  119 (333)
T KOG1853|consen  105 AIKEQLRKYIRELEQ  119 (333)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666667777776765

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.74  E-value=3.8  Score=43.88  Aligned_cols=65  Identities=23%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ----AQLKDGINSFLLF  408 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ----aqLrdALnEaL~~  408 (416)
                      --.++.|+.++++|+.||+.|+..++-|...+..|..+.+.+..+|+++..|    .+++.-.+++|+.
T Consensus       296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr  364 (502)
T KOG0982|consen  296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR  364 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778889999999999999999999999999999998888888877665    2444445555443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.57  E-value=2.9  Score=42.26  Aligned_cols=51  Identities=25%  Similarity=0.437  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .-+.+++.+++.|+.|...|..++..|+++...|..|..+|+.++..++++
T Consensus        43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e   93 (314)
T PF04111_consen   43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE   93 (314)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556666666666666666666666666666666666666666555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=90.54  E-value=9.2  Score=32.08  Aligned_cols=48  Identities=33%  Similarity=0.524  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQR---DSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqr---e~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      +|..+++.|+.+-..++.++..+..   +...|..+-.+|+.++..++.+.
T Consensus        40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~   90 (108)
T PF02403_consen   40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL   90 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566666666666555   35667777778888887777653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=90.47  E-value=6  Score=37.29  Aligned_cols=65  Identities=26%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ-Q-AQLKDGINSFLLFYYLL  412 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq-Q-aqLrdALnEaL~~Evqr  412 (416)
                      ..+|+.++..|+.++..|..++..|+.++..+...+.++++...+..+ + ..|+ ..|..|+.++.+
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk-~~~~ql~~~l~~  188 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK-KQNQQLKAQLEQ  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence            467777778888888888888888877777777776665443333211 1 2233 335555555443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.24  E-value=8.6  Score=46.53  Aligned_cols=90  Identities=14%  Similarity=0.091  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRY-------------ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~Y-------------leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ++++.+-+.++.|.+.+.-+.++             +++|+.+++..+.+...+..++..++.+...+..+...|+.+++
T Consensus       321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa  400 (1486)
T PRK04863        321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA  400 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666655544332             23333444444444444444444444455555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 014879          391 AMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       391 aLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      .+++...........++..+++|
T Consensus       401 elqqel~elQ~el~q~qq~i~~L  423 (1486)
T PRK04863        401 DYQQALDVQQTRAIQYQQAVQAL  423 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444333333344444444444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.24  E-value=6.6  Score=40.03  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          327 KRILANRQSAARSKERKMRYISELEQK-------VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK  399 (416)
Q Consensus       327 KRiLkNRESArRSReRKk~YleELE~K-------Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr  399 (416)
                      .-|..+-+--.+-|+-|+=.|+.||.-       |..-..+.+.|..++..|...|..|..-+..|...|+.-|.|+..-
T Consensus        21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l  100 (307)
T PF10481_consen   21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL  100 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence            344445555556677777888888864       4444455566667777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhhc
Q 014879          400 DGINSFLLFYYLLLLH  415 (416)
Q Consensus       400 dALnEaL~~EvqrL~q  415 (416)
                      ++.....+..|.+|.|
T Consensus       101 EgQl~s~Kkqie~Leq  116 (307)
T PF10481_consen  101 EGQLNSCKKQIEKLEQ  116 (307)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7888888888888765

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=90.19  E-value=9.3  Score=40.90  Aligned_cols=52  Identities=19%  Similarity=0.131  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      |+.-|+.+.+..-+-.-+-=++.+.++|..++.||.||..|..+........
T Consensus        27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~   78 (459)
T KOG0288|consen   27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE   78 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554444333222223355678899999999999999887766544333

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=90.15  E-value=3.3  Score=37.35  Aligned_cols=62  Identities=13%  Similarity=0.003  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879          352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      ...+.|+........++..|+.++.........-...|+.|+..++......+.....++.+
T Consensus        27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v   88 (160)
T PF13094_consen   27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV   88 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            33444444444555555556666666666655555666666666555545444444444333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.97  E-value=7.8  Score=34.37  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL  398 (416)
Q Consensus       329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL  398 (416)
                      +..-.+...-|+..=...-++|+..++.|+.++..+...+..|+.++..+......  .++..|+.+.++
T Consensus        21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l~~r~   88 (107)
T PF09304_consen   21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKLELESRL   88 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            33344444445444444445555555555555555555555555555555444333  233344444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=89.69  E-value=0.015  Score=59.84  Aligned_cols=62  Identities=31%  Similarity=0.343  Sum_probs=52.9

Q ss_pred             ccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014879          320 LSDPKRAKRILANRQSAAR---SKERKMRYISELEQKVQTLQ-TEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       320 l~DpKR~KRiLkNRESArR---SReRKk~YleELE~KVq~Lq-sENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      ..+.|+..|..+|+.+|.+   +|.||+.+..+|+.+|+.|+ .++..|..++..|+.+.+.+..+
T Consensus       150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~  215 (395)
T KOG1414|consen  150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKE  215 (395)
T ss_pred             cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHH
Confidence            3567899999999999999   99999999999999999999 88888877777777666555443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=89.65  E-value=12  Score=36.43  Aligned_cols=29  Identities=28%  Similarity=0.351  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          361 ATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       361 Ns~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      +..++.++..|+.++..|...|..|..+|
T Consensus       218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l  246 (312)
T PF00038_consen  218 LKELRRQIQSLQAELESLRAKNASLERQL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence            33333333333333333333333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=89.60  E-value=6.4  Score=46.01  Aligned_cols=69  Identities=23%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      -|.++-+|-||.-   --.|+...+.+|..+.+++......+..++..|.+....|..||..|..+|+.|.+
T Consensus       490 iknlnk~L~~r~~---elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  490 IKNLNKSLNNRDL---ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3444555555432   22344455555555555555555555555555555555666666666555555544

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.54  E-value=2.9  Score=42.75  Aligned_cols=52  Identities=42%  Similarity=0.490  Sum_probs=37.8

Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 014879          348 SELEQKVQ---TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM-EQQAQLK  399 (416)
Q Consensus       348 eELE~KVq---~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL-EqQaqLr  399 (416)
                      ++|..|..   ..+.|.+.|..|+..||+++..++.||.+|.+.|+.. +.|.+|.
T Consensus       220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~  275 (306)
T PF04849_consen  220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ  275 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444433   4567788899999999999999999999999888764 3344443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.48  E-value=20  Score=34.17  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT  379 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~  379 (416)
                      ..+++.+++-+.-+.+=..-+..+..++.++..|+-|+..|..++..++++...|.
T Consensus        72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666555555555555566666666666666666666666555555544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=89.47  E-value=9.1  Score=42.00  Aligned_cols=51  Identities=18%  Similarity=0.246  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      .++.|+.+.+.+...+..|..+...|..++..+.....+|...+..|.++.
T Consensus       186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555554444444444444544444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.45  E-value=15  Score=32.70  Aligned_cols=57  Identities=16%  Similarity=0.226  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      =+..|+.......++..-++.|+..++.|+.++..+..++..++.+...|..+++.+
T Consensus        50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~  106 (151)
T PF11559_consen   50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL  106 (151)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444455555555555444444444444444444444444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=89.36  E-value=12  Score=31.60  Aligned_cols=78  Identities=21%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 014879          326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA-MEQQAQLKDGIN  403 (416)
Q Consensus       326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa-LEqQaqLrdALn  403 (416)
                      +.++-..+......=..|+.-+..||.++..|..|.+.-..++-.+.+....|..|++.|+..+.. -+-..+|++..+
T Consensus         5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~   83 (96)
T PF08647_consen    5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK   83 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345566667777777788888999999999999999999999999999999999999999887755 555567776433

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=89.33  E-value=0.59  Score=43.84  Aligned_cols=52  Identities=17%  Similarity=0.342  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI  402 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL  402 (416)
                      |+++|.|+.+.-.+|.-|..+|.    +...|..+++.||..+..|.|...+++.+
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl~V~ek~   53 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQELIVQEKL   53 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            68999999999999988888873    34556666666666666666555555443

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.19  E-value=17  Score=34.61  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       340 ReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      ..+++..+..|+.+++.++.+...++.++..++..+
T Consensus        65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   65 IEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444443333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.18  E-value=21  Score=34.89  Aligned_cols=66  Identities=21%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      ..|+.+...++.++..|..+....+.+...|..+..++...+..|++..+-++...+.|+.++...
T Consensus        50 ~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a  115 (246)
T PF00769_consen   50 EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA  115 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666666777777777777777777777777888888888888888888888888888777654

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.10  E-value=4.1  Score=46.60  Aligned_cols=13  Identities=31%  Similarity=0.526  Sum_probs=8.0

Q ss_pred             cCCCCCCCCCCCC
Q 014879           42 LDSLPPLSPSMSS   54 (416)
Q Consensus        42 ~dsLpPlsp~~~~   54 (416)
                      ++.++||+|-.+.
T Consensus       115 ls~~qpL~~a~p~  127 (1118)
T KOG1029|consen  115 LSYSQPLPPAAPR  127 (1118)
T ss_pred             cCcCCCCCccccc
Confidence            5666777755444

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.05  E-value=9.6  Score=44.02  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=59.2

Q ss_pred             hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          316 AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       316 aElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ++-++.|..++|--++-+...|---++-+.-++++|.+....+.....|...++.|.+....|...+.....+++.-++
T Consensus       381 ~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~  459 (980)
T KOG0980|consen  381 AQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ  459 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555556666666666666666666667899999999999999999999999998888888888887777655443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=88.99  E-value=2.7  Score=36.72  Aligned_cols=46  Identities=20%  Similarity=0.328  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      +|=.++..|+.....|..++..|+.+...|..||.+|+..-+.|..
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~   50 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE   50 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888888888888888888888888888888766665543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.83  E-value=4.4  Score=40.70  Aligned_cols=49  Identities=18%  Similarity=0.218  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +.++..|..++..+..+...++.++..|+.+...+..+..+++.+.+.+
T Consensus       208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l  256 (325)
T PF08317_consen  208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL  256 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555554444443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.72  E-value=8.1  Score=40.47  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      -=.|-+..+..||.-+..+..||..|..|+..+.+++-....|+.+|...|
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL  171 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL  171 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence            345667778889999999999999999999999999988888877775444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=88.61  E-value=5.3  Score=45.89  Aligned_cols=48  Identities=27%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      |..|..+.+.|++|.+.|...+..+|.+...-..|..++..|+..+++
T Consensus       108 iriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~  155 (1265)
T KOG0976|consen  108 IRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED  155 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.49  E-value=4.7  Score=44.75  Aligned_cols=72  Identities=18%  Similarity=0.225  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL---KFRLQAMEQQAQLKDGINSFLLFYYLLLLHL  416 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL---K~RLqaLEqQaqLrdALnEaL~~EvqrL~ql  416 (416)
                      ..+.+|+..+..|+.++..|..++..+.++...=...+.++   ..++..|+...+=+....|.|+.++.+|++|
T Consensus       436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~  510 (652)
T COG2433         436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM  510 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555554444333333333   3445555555555555566677777666643

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=88.43  E-value=6.4  Score=41.23  Aligned_cols=46  Identities=33%  Similarity=0.502  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQR---DSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqr---e~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      |..+++.|+.+-+.++.++..+..   +...|..|-++|+.+|..++.+
T Consensus        40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~   88 (425)
T PRK05431         40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAE   88 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555544221   2335666667777777776654

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=88.27  E-value=2.8  Score=40.95  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      +++.+++++..|..|...++.+++.|..|++.|+.++
T Consensus       173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444333

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=88.21  E-value=2.5  Score=42.95  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      +.|-|.+++.=++|...|+.||..+++++
T Consensus        77 Lkes~~~l~dRetEI~eLksQL~RMrEDW  105 (305)
T PF15290_consen   77 LKESENRLHDRETEIDELKSQLARMREDW  105 (305)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            45556666666677777777776666554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=88.17  E-value=7.4  Score=42.69  Aligned_cols=62  Identities=19%  Similarity=0.333  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       334 ESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      +.|.+.+..=.+-+.+++..+..+++|...+...+..|+.+...|..||..|...|+.+..+
T Consensus       130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            34545555555556667777778888888888888888888888888888887777766543

>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle

Probab=88.15  E-value=6.3  Score=40.68  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=54.7

Q ss_pred             ccChHHHHhhh--hhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Q 014879          300 EFNDAELKKIW--ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE-----------ATTLSA  366 (416)
Q Consensus       300 ~~s~~e~kKi~--~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsE-----------Ns~Ls~  366 (416)
                      +.+-..||.+.  -+-.|...-....++.|++|++|...-..=+||...+.-=+..+++|..-           ......
T Consensus        96 ~qdl~~Mk~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D  175 (323)
T PF08537_consen   96 EQDLTRMKNACTNINSRLPNRERKSGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSD  175 (323)
T ss_pred             HHHHHHHHHHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchh
Confidence            33334455554  22223333333445667899999988888778865554445566665521           111235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          367 QVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      ++.+||.+++.|..+..++..+|+.+...
T Consensus       176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~  204 (323)
T PF08537_consen  176 RVILLQKKIDELEERLNDLEKELEITKKD  204 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777766666666666666666655433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.08  E-value=12  Score=35.73  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          366 AQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       366 ~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .++..++.++..|.-|+..|.+|+..+++.
T Consensus        93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~E  122 (201)
T PF13851_consen   93 ARLKELEKELKDLKWEHEVLEQRFEKLEQE  122 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555554444444443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=88.04  E-value=3.7  Score=46.55  Aligned_cols=48  Identities=19%  Similarity=0.176  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhcC
Q 014879          369 TILQRDSAGLTSENNELKFRLQAMEQQAQLKDG---------------------INSFLLFYYLLLLHL  416 (416)
Q Consensus       369 t~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdA---------------------LnEaL~~EvqrL~ql  416 (416)
                      ..|+.++..+..||..||-.|..+..+..||-.                     -.-.|.+|-|||+.|
T Consensus       137 ~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l  205 (769)
T PF05911_consen  137 EDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL  205 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555444443321                     223577888888754

The function of this family is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=87.77  E-value=3.4  Score=36.45  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      .+|=.+|..|+.....|..++..|+.+...|..||..|+..-+.|
T Consensus         4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L   48 (110)
T PRK13169          4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL   48 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888888888888888888888888888888886554444

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=87.77  E-value=3.3  Score=41.86  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLL  412 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Evqr  412 (416)
                      +.+.+.+++..+.+...+..++..|+.++.....|...|+.+++..+....-...|.+.|..|..|
T Consensus       230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R  295 (344)
T PF12777_consen  230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER  295 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Confidence            344555555566666666666777777777777777777777777776666666777777777665

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.75  E-value=7.1  Score=34.83  Aligned_cols=36  Identities=36%  Similarity=0.457  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      ||.++..|+.++..|..+-..+..++..|+.+|.++
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=87.66  E-value=0.73  Score=39.88  Aligned_cols=69  Identities=19%  Similarity=0.200  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS---ENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH  415 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s---EN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q  415 (416)
                      ....++|..+..++.|...|.+.|  .++-+.++..   +...+..++..|+.+..=.+.+.+.|+.+|..|..
T Consensus         8 ~~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~   79 (100)
T PF06428_consen    8 ERREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT   79 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566666666677766666654  1222333322   33345555666666655555777777777776654

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.53  E-value=3.2  Score=34.45  Aligned_cols=52  Identities=19%  Similarity=0.152  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      +.|.+||.++..-+.-...|...++..+.....+..+.+-|-.|+..++.++
T Consensus         8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~   59 (72)
T COG2900           8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA   59 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4688999999999999999999999988888888888888888888776543

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.44  E-value=2  Score=45.28  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL  398 (416)
Q Consensus       333 RESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL  398 (416)
                      -+.|+--|+|-.+.-...|..+..+..|...|++++..++....+|..|+..||.-+..+|-..|.
T Consensus       226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh  291 (561)
T KOG1103|consen  226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH  291 (561)
T ss_pred             hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            357788889999999999999999999999999999999999999999999999988888766543

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.90  E-value=3.2  Score=37.68  Aligned_cols=53  Identities=25%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          343 KMRYISELEQKVQTLQTEATTLSAQV--TILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       343 Kk~YleELE~KVq~LqsENs~Ls~Ql--t~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .+..+.+|+..+..|+.|...|...+  ..|......|..|+.+|..||+.|...
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~  138 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG  138 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34566777777777777777777765  567778888888888888888888763

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=86.88  E-value=5.3  Score=33.53  Aligned_cols=84  Identities=21%  Similarity=0.229  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 014879          331 ANRQSAARSKERK------MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS---ENNELKFRLQAMEQQAQLKDG  401 (416)
Q Consensus       331 kNRESArRSReRK------k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s---EN~ELK~RLqaLEqQaqLrdA  401 (416)
                      .|.+..+.+-.++      ...+.+|..+...++.+...|.++-..+.++...+..   +-.+|+.++..+..+..--+.
T Consensus         9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~   88 (108)
T PF02403_consen    9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE   88 (108)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            3555555554444      3556677777777777777888877777777777776   356777777777777665556


Q ss_pred             HHHHHHHHHHHhh
Q 014879          402 INSFLLFYYLLLL  414 (416)
Q Consensus       402 LnEaL~~EvqrL~  414 (416)
                      ....+..+++.+.
T Consensus        89 ~~~~~e~~l~~~l  101 (108)
T PF02403_consen   89 QLKELEEELNELL  101 (108)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666677766653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=86.87  E-value=2.6  Score=31.73  Aligned_cols=42  Identities=31%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      .||+....|......|......|.+++..|..|...|+.+++
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            467777777777788888888888888888888887777665

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02977 phageshock_pspA phage shock protein A

Probab=86.64  E-value=9.9  Score=36.18  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI  402 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL  402 (416)
                      .+.+..|+.++..++.....|..++..|++++..+......|+.|++....+.++...+
T Consensus        98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~  156 (219)
T TIGR02977        98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL  156 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888888888999999999999999999888888888877776665544

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.63  E-value=7.7  Score=38.81  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ..-..|-.++..|..++..++.+...|..||..|...+..+.
T Consensus       149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            333333344444444444444444444445544444444443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=86.60  E-value=14  Score=37.61  Aligned_cols=71  Identities=23%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHh
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN-------ELKFRL-QAMEQQAQLKDGI--NSFLLFYYLLL  413 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~-------ELK~RL-qaLEqQaqLrdAL--nEaL~~EvqrL  413 (416)
                      -+.+..||..+.++......|+.-|..|++.+..|..-.+       .+.+|| |++|.-+-|...|  .+.|-++||||
T Consensus        90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRL  169 (333)
T KOG1853|consen   90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL  169 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3344455555555555555555555555555544443332       122333 3344444444333  24567778887


Q ss_pred             h
Q 014879          414 L  414 (416)
Q Consensus       414 ~  414 (416)
                      +
T Consensus       170 k  170 (333)
T KOG1853|consen  170 K  170 (333)
T ss_pred             H
Confidence            5

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=86.58  E-value=13  Score=34.60  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       355 q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ..++.++..|..++..|+.++..|....+.+..++..|+
T Consensus        85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle  123 (158)
T PF09744_consen   85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE  123 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence            456667777777777777777777765555555544443

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=86.57  E-value=7.4  Score=43.68  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 014879          328 RILANRQSAARSKERKMRYISELEQ-KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-----AQLKDG  401 (416)
Q Consensus       328 RiLkNRESArRSReRKk~YleELE~-KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-----aqLrdA  401 (416)
                      -+|.-++.||.-|-|-.+.+.++.+ ++..-+...++=.-..+.|+.+...|++|..+||.++.+||..     .++|. 
T Consensus       128 svLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~-  206 (861)
T KOG1899|consen  128 SVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRL-  206 (861)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHh-
Confidence            4788889999888887776544432 2222222222222233889999999999999999999998833     45663 


Q ss_pred             HHHHHHHHHHHh
Q 014879          402 INSFLLFYYLLL  413 (416)
Q Consensus       402 LnEaL~~EvqrL  413 (416)
                       .|-|..||.++
T Consensus       207 -se~l~qevn~~  217 (861)
T KOG1899|consen  207 -SENLMQEVNQS  217 (861)
T ss_pred             -HHHHHHHHHHH
Confidence             34455566554

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=86.40  E-value=3.2  Score=35.48  Aligned_cols=43  Identities=28%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      |+-|-...|.+|..|+.++..|..++..|+.+......|.++|
T Consensus        40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L   82 (87)
T PF12709_consen   40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL   82 (87)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444443333

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PRK10698 phage shock protein PspA; Provisional

Probab=86.22  E-value=14  Score=35.54  Aligned_cols=72  Identities=15%  Similarity=0.258  Sum_probs=55.1

Q ss_pred             HHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          331 ANRQS-AARSKERKMR---YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI  402 (416)
Q Consensus       331 kNRES-ArRSReRKk~---YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL  402 (416)
                      ++|+- |+..=.+|+.   .+..|+.++...+.....|..++..|+..+..+......|+.|.+.-+.+.+++.++
T Consensus        81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~  156 (222)
T PRK10698         81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL  156 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443 3343444444   456788888888888888999999999999999999999999998888888777654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.21  E-value=4.8  Score=44.28  Aligned_cols=58  Identities=21%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD  400 (416)
Q Consensus       343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd  400 (416)
                      ..+-+++|+.+|+.|..+...+..++..++.....+..+..+.+...+.++++..++.
T Consensus       326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~  383 (594)
T PF05667_consen  326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK  383 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566665555555555555555555555555555555555555554443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=86.15  E-value=6.1  Score=40.32  Aligned_cols=44  Identities=27%  Similarity=0.249  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014879          365 SAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLF  408 (416)
Q Consensus       365 s~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~  408 (416)
                      +++-+.|.-++..|..+|.+||.|++.||.. .-||+++.|..++
T Consensus       247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~  291 (294)
T KOG4571|consen  247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK  291 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455566777888888888888888888776 4567776666554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.68  E-value=18  Score=34.55  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014879          335 SAARSKERKM-RYISELEQKVQTLQTEATTLSA  366 (416)
Q Consensus       335 SArRSReRKk-~YleELE~KVq~LqsENs~Ls~  366 (416)
                      ||+.-+.+.. ..+.+|..+++.|..||..|..
T Consensus         8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~   40 (194)
T PF15619_consen    8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ   40 (194)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4554444443 3456666666666666666554

>PF15294 Leu_zip: Leucine zipper

Probab=85.66  E-value=2.7  Score=42.45  Aligned_cols=45  Identities=20%  Similarity=0.432  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      |...+..|+.||..|+.++..++.++...+.|+..|+.+|..|.-
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999988887765

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.66  E-value=37  Score=33.11  Aligned_cols=29  Identities=24%  Similarity=0.468  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      ..+..|+.++..|+..|..|..+|..++.
T Consensus       223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~  251 (312)
T PF00038_consen  223 RQIQSLQAELESLRAKNASLERQLRELEQ  251 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence            33444555555555555555555544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=85.63  E-value=26  Score=31.22  Aligned_cols=62  Identities=27%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          330 LANRQ-SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       330 LkNRE-SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      +.||- +-.++.+--|.-.++|-.+-..|.+-+..|.+|...+.+++..|..+..++...|..
T Consensus        14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444 335666666666777777777777777777777777777777777777777666666

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=85.53  E-value=6.2  Score=37.28  Aligned_cols=68  Identities=18%  Similarity=0.243  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD--------GINSFLLFYYLLLL  414 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd--------ALnEaL~~EvqrL~  414 (416)
                      ++|=..+...|...|+-|+.|+......+..|..++..|...+..+.....+++        +++..+..|-.||+
T Consensus        69 LeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll  144 (182)
T PF15035_consen   69 LEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLL  144 (182)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence            444455566666667777777777777777777777777666666544433332        44555555555543

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=85.46  E-value=12  Score=32.32  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTIL--QRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~L--qre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      +.-++.|+.++.......+.+..++..|  ..+.+.|..+..+++-++..|+.+.
T Consensus        34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l   88 (106)
T PF10805_consen   34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL   88 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4445556666666666666666666666  6666666666666666666665553

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=85.33  E-value=5.1  Score=39.88  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 014879          353 KVQTLQTEATTLSAQVTILQRDSA----GLTSENNELKFRL  389 (416)
Q Consensus       353 KVq~LqsENs~Ls~Qlt~Lqre~~----~L~sEN~ELK~RL  389 (416)
                      .+..|+.||.+|++|+..|+.+..    .+..||.+||.-|
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL  107 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL  107 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445566777777777665533333    2666666665533

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>TIGR00414 serS seryl-tRNA synthetase

Probab=85.25  E-value=11  Score=39.37  Aligned_cols=48  Identities=23%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRD----SAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre----~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      +|..+++.|+.|-+.++.++..+...    .+.|..+-++|+.+|..++++.
T Consensus        41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~   92 (418)
T TIGR00414        41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL   92 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666667777777776654322    4577777788888888887664

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.92  E-value=5.9  Score=38.93  Aligned_cols=48  Identities=13%  Similarity=0.308  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +-+.+|..+++.|+.|...|+.+++.++.++..|....++|-..|..+
T Consensus        54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999999887777654

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=84.84  E-value=9.9  Score=36.86  Aligned_cols=11  Identities=36%  Similarity=0.434  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHH
Q 014879          377 GLTSENNELKF  387 (416)
Q Consensus       377 ~L~sEN~ELK~  387 (416)
                      .+..||.+|+.
T Consensus        97 ~l~~en~~L~~  107 (276)
T PRK13922         97 QLEAENARLRE  107 (276)
T ss_pred             HHHHHHHHHHH
Confidence            34445544443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=84.83  E-value=20  Score=42.30  Aligned_cols=59  Identities=22%  Similarity=0.353  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQV-TILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINS  404 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Ql-t~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnE  404 (416)
                      +|..+...|..|+.+...+.++. ..++.+...+..+...|++++++|+.+ .+|++.+++
T Consensus       366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~  426 (1074)
T KOG0250|consen  366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE  426 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444 444444445555555555555555544 345544443

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=84.81  E-value=6.6  Score=38.07  Aligned_cols=9  Identities=56%  Similarity=0.608  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 014879          380 SENNELKFR  388 (416)
Q Consensus       380 sEN~ELK~R  388 (416)
                      .||++|+.+
T Consensus        76 ~en~~L~~e   84 (276)
T PRK13922         76 EENEELKKE   84 (276)
T ss_pred             HHHHHHHHH
Confidence            333333333

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=84.71  E-value=29  Score=31.12  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 014879          353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ--QAQLKDGINSFLLFYYL  411 (416)
Q Consensus       353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq--QaqLrdALnEaL~~Evq  411 (416)
                      +|..|+.+...+..+++.+..++..+   +..++..|..+++  ...|+.++.+.++..+.
T Consensus       146 ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~  203 (218)
T cd07596         146 KVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDLKAALKEFARLQVQ  203 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444333333   3344445555554  35566666666666554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.61  E-value=14  Score=37.27  Aligned_cols=46  Identities=24%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +.+|+..++.++.+...|-.++..++.+...+..++.+++..|..+
T Consensus        40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l   85 (265)
T COG3883          40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL   85 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=84.59  E-value=8  Score=39.66  Aligned_cols=44  Identities=16%  Similarity=0.130  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          364 LSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLL  407 (416)
Q Consensus       364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~  407 (416)
                      |...|..-..++.....|...|..+|..+++..+--.+.||-|.
T Consensus       218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~  261 (306)
T PF04849_consen  218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQ  261 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34444444444444444444555555555444444434444444

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR00219 mreC rod shape-determining protein MreC

Probab=84.55  E-value=4.1  Score=40.50  Aligned_cols=40  Identities=28%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879          374 DSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL  416 (416)
Q Consensus       374 e~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ql  416 (416)
                      ....|..||.+||.++..|.++.+.   +.+.|++|-+||++|
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~L  106 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLREL  106 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            3345667777777666665333222   122256666666543

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=84.44  E-value=0.55  Score=40.10  Aligned_cols=48  Identities=25%  Similarity=0.383  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      .||+.|...+..|..+|..|..++..|+.++..+..++..|+..|...
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a   72 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA   72 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence            588889999999999999999999988888888888877777665433

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=84.36  E-value=16  Score=35.46  Aligned_cols=31  Identities=16%  Similarity=-0.015  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879          385 LKFRLQAMEQQAQLKDGINSFLLFYYLLLLH  415 (416)
Q Consensus       385 LK~RLqaLEqQaqLrdALnEaL~~EvqrL~q  415 (416)
                      ++.-|..+++|+..-+..-.-=+.|++.|+|
T Consensus       165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q  195 (195)
T PF12761_consen  165 VREDLDTIEEQVDGLESHLSSKKQELQQLRQ  195 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3344455555543322222333677777765

>smart00338 BRLZ basic region leucin zipper

Probab=84.21  E-value=4.2  Score=31.56  Aligned_cols=28  Identities=25%  Similarity=0.448  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          367 QVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      .+..|+.++..|..+|.+|+.++..|+.
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~   54 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRR   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.09  E-value=32  Score=31.31  Aligned_cols=14  Identities=14%  Similarity=0.238  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q 014879          357 LQTEATTLSAQVTI  370 (416)
Q Consensus       357 LqsENs~Ls~Qlt~  370 (416)
                      +......+..++..
T Consensus       135 l~~~~~~~~~e~~~  148 (191)
T PF04156_consen  135 LDESIKELEKEIRE  148 (191)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=83.58  E-value=0.19  Score=51.92  Aligned_cols=55  Identities=27%  Similarity=0.475  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014879          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLS-AQVTILQRDSA  376 (416)
Q Consensus       322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls-~Qlt~Lqre~~  376 (416)
                      |+++.+=+.+||.+|-++|.|||.++..|+.+...+..+|..|. .+++.|...+.
T Consensus       283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~  338 (395)
T KOG1414|consen  283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK  338 (395)
T ss_pred             hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence            44553335599999999999999999999999999999999888 44444444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=83.55  E-value=16  Score=34.24  Aligned_cols=56  Identities=25%  Similarity=0.362  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI  402 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL  402 (416)
                      +..|+..+..+......|..++..|+.++..+..+-..|+.|......+.++.+++
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~  155 (221)
T PF04012_consen  100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEAL  155 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666666666666777777777777777777777776666666666666544

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus

Probab=83.54  E-value=14  Score=35.76  Aligned_cols=46  Identities=22%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          337 ARSKERKMRYISELEQKVQT---LQTEATTLSAQVTILQRDSAGLTSEN  382 (416)
Q Consensus       337 rRSReRKk~YleELE~KVq~---LqsENs~Ls~Qlt~Lqre~~~L~sEN  382 (416)
                      ++...-+..|+..|+.++..   ++..++.|..++..|.+++..+..+.
T Consensus       160 a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~  208 (247)
T PF14661_consen  160 ARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL  208 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556677777777766   77777777777777777666666665

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=83.51  E-value=13  Score=36.38  Aligned_cols=44  Identities=16%  Similarity=0.257  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ||.+...+.++...|..++...+.+...+..++..|+.+.+.+.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~  192 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ  192 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44444444444444555555555555555555555555544443

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=83.49  E-value=4.3  Score=35.09  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 014879          372 QRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       372 qre~~~L~sEN~ELK~RLqaL  392 (416)
                      ++++..|..+|..|+.+++.|
T Consensus        40 ~~e~~~l~~~n~~L~~eI~~L   60 (105)
T PRK00888         40 QQTNAKLKARNDQLFAEIDDL   60 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333333333

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=83.39  E-value=2.4  Score=36.07  Aligned_cols=19  Identities=26%  Similarity=0.286  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014879          368 VTILQRDSAGLTSENNELK  386 (416)
Q Consensus       368 lt~Lqre~~~L~sEN~ELK  386 (416)
                      ++..--++..|..||+.|+
T Consensus        46 vtr~A~EN~rL~ee~rrl~   64 (86)
T PF12711_consen   46 VTRFAMENIRLREELRRLQ   64 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555543

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=83.21  E-value=5.6  Score=38.05  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKF  387 (416)
Q Consensus       353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~  387 (416)
                      ++..|+.+-..+..++-.++..|..|..|..+||.
T Consensus       176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~  210 (221)
T PF05700_consen  176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR  210 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444333333

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.19  E-value=9.1  Score=43.95  Aligned_cols=62  Identities=21%  Similarity=0.134  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ...+-..-.--+.+-.-.++.|.+++..|+.||..|.++++....++..|..++.-||.+|.
T Consensus       655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444444444555556677777788888888888888888888888888888888887776

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=82.99  E-value=7.1  Score=38.70  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGIN  403 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALn  403 (416)
                      +|.+-.++....++..-.+-+.....++.+...|..||..|+.+++.|.++ .+|++.+.
T Consensus       194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~  253 (269)
T KOG3119|consen  194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL  253 (269)
T ss_pred             HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444445555555556666666666665554 34454443

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=82.59  E-value=5  Score=39.57  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN  383 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~  383 (416)
                      ++...|||.++..++.+...|..++..|+.++..|-..-+
T Consensus        92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR  131 (248)
T PF08172_consen   92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR  131 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344666666666666666666666665555555554443

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=82.39  E-value=5.6  Score=34.38  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          342 RKMRYISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      +.++.+++++.+++.|+.+|..|..++..|+.
T Consensus        31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            34455566666666666666666666665554

>PF15030 DUF4527: Protein of unknown function (DUF4527)

Probab=82.32  E-value=33  Score=34.71  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          328 RILANRQSAARSKERKMRYIS-ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL  406 (416)
Q Consensus       328 RiLkNRESArRSReRKk~Yle-ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL  406 (416)
                      +.|-.+.---++.-|-+...- +|........--..+|..++..|+++.....--..=||.+|..|-+.-+=|.-|...|
T Consensus        19 ~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l   98 (277)
T PF15030_consen   19 QQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL   98 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443332 3333333333333445555666666665555555667777777777766666666666


Q ss_pred             HHHHHH
Q 014879          407 LFYYLL  412 (416)
Q Consensus       407 ~~Evqr  412 (416)
                      -+|+.|
T Consensus        99 lqel~R  104 (277)
T PF15030_consen   99 LQELHR  104 (277)
T ss_pred             HHHHHH
Confidence            666655

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.26  E-value=8.2  Score=35.03  Aligned_cols=50  Identities=26%  Similarity=0.444  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDS--AGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~--~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      +.+|..++..|+.++..|..++..|....  ..|..+..+|+.++..|+...
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL  132 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL  132 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777777777766654  556666666666666666553

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=82.24  E-value=15  Score=39.49  Aligned_cols=76  Identities=20%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 014879          341 ERKMRYISELEQKVQT--------------LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA----------  396 (416)
Q Consensus       341 eRKk~YleELE~KVq~--------------LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa----------  396 (416)
                      .=|..|-+|||+.+..              ...+.+.+..++..|-+++..-.-||..|.+.+++-+|..          
T Consensus       389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL  468 (593)
T KOG4807|consen  389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL  468 (593)
T ss_pred             HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4578888998887654              3456666777788888888888888888877665544321          


Q ss_pred             -HHHHHHHHHHHHHHHHhhcC
Q 014879          397 -QLKDGINSFLLFYYLLLLHL  416 (416)
Q Consensus       397 -qLrdALnEaL~~EvqrL~ql  416 (416)
                       .-...||-.|.+||-||+.|
T Consensus       469 naHNQELnnRLaaEItrLRtl  489 (593)
T KOG4807|consen  469 NAHNQELNNRLAAEITRLRTL  489 (593)
T ss_pred             HHHHHHHhhHHHHHHHHHHHH
Confidence             11226788889999999754

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.15  E-value=16  Score=42.16  Aligned_cols=46  Identities=28%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      |+++|...++.+......|-.++..+++....|..||.+|+.+++.
T Consensus       651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~  696 (970)
T KOG0946|consen  651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD  696 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.08  E-value=33  Score=40.49  Aligned_cols=67  Identities=21%  Similarity=0.199  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      +.+|+..++.+...+..-...+..-+++++.|..|-.+|+..++..+++..--....+.|+.|+-.|
T Consensus       789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l  855 (1174)
T KOG0933|consen  789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL  855 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666555555555555556666666666666666666666665433334444445544433

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=82.05  E-value=20  Score=32.98  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSA---QVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLL  407 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~---Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~  407 (416)
                      ..|+.++.....+...|..   -+..|+.++..|..+|...+..+++--.+.++..||..+|.
T Consensus        30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~   92 (155)
T PF06810_consen   30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK   92 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443   34445555555556666444444444444445555555554

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PRK09039 hypothetical protein; Validated

Probab=81.90  E-value=51  Score=33.79  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ..+...+|..|+.|...|+.|+..|+..+..+..+..+.+.+|+.|++
T Consensus       132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~  179 (343)
T PRK09039        132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR  179 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566677777777777777777777777777777777777777743

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=81.88  E-value=13  Score=40.72  Aligned_cols=56  Identities=27%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKD  400 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrd  400 (416)
                      +.|+.+-.++..++.||.+|..+|..++++...+..|+.+|.+-|+++-+. .++.+
T Consensus       219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a  275 (596)
T KOG4360|consen  219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA  275 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            344555566677889999999999999999999999999999999987653 44443

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=81.80  E-value=35  Score=30.18  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=8.8

Q ss_pred             hhhhhHhhhhccCHHHHHHHHH
Q 014879          310 WANEKLAEIALSDPKRAKRILA  331 (416)
Q Consensus       310 ~~~~~LaElAl~DpKR~KRiLk  331 (416)
                      ++.+.|.++-. |+.++..++.
T Consensus         4 lS~~eL~~Ll~-d~~~l~~~v~   24 (150)
T PF07200_consen    4 LSTEELQELLS-DEEKLDAFVK   24 (150)
T ss_dssp             -TTHHHHHHHH-H-HHHHHHGG
T ss_pred             CCHHHHHHHHc-CHHHHHHHHH
Confidence            44455555533 4444444444

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=81.74  E-value=14  Score=29.38  Aligned_cols=47  Identities=30%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      -|++|...|+.|..+...|...+..|+.+.+....|-..-.+||..+
T Consensus         4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~   50 (56)
T PF04728_consen    4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677777777777777777777777766666666665555555443

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=81.74  E-value=21  Score=32.64  Aligned_cols=67  Identities=12%  Similarity=0.015  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      +.....+...++.+..+..+|+.|+.....-..+...|+..++.....+.-++...+.|+.|-+.|+
T Consensus        29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR   95 (135)
T TIGR03495        29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR   95 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3344455566666677777777777666666666667777777777666666666666777665554

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=81.65  E-value=27  Score=34.61  Aligned_cols=76  Identities=13%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 014879          326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--AQLKDGIN  403 (416)
Q Consensus       326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--aqLrdALn  403 (416)
                      +|-.++-|+-++---++|.+|+.-+.       .+...|..++..++.+....   |+.||..++.++++  ..++.++.
T Consensus       151 lK~vlk~R~~~Q~~le~k~e~l~k~~-------~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~~k~~D~k~~~~  220 (243)
T cd07666         151 LMGVIKRRDQIQAELDSKVEALANKK-------ADRDLLKEEIEKLEDKVECA---NNALKADWERWKQNMQTDLRSAFT  220 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778877777777777777653       33345555555555555444   66688888888776  56777777


Q ss_pred             HHHHHHHH
Q 014879          404 SFLLFYYL  411 (416)
Q Consensus       404 EaL~~Evq  411 (416)
                      +-+..-|+
T Consensus       221 ~yae~~i~  228 (243)
T cd07666         221 DMAENNIS  228 (243)
T ss_pred             HHHHHHHH
Confidence            76665554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.58  E-value=17  Score=36.45  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +++..|++.++.|+..|..+++.|+.++..+..+.+.|......|
T Consensus       138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L  182 (290)
T COG4026         138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL  182 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555544444444444443333333

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=81.53  E-value=31  Score=32.57  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      |.+|+.+...|+.+...|..++..+++..
T Consensus       129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~  157 (189)
T PF10211_consen  129 IEELEEEKEELEKQVQELKNKCEQLEKRE  157 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=81.51  E-value=35  Score=37.89  Aligned_cols=10  Identities=30%  Similarity=0.391  Sum_probs=3.7

Q ss_pred             CCCCCCCCcc
Q 014879          108 RSSSDIPLGF  117 (416)
Q Consensus       108 Rs~Sd~p~g~  117 (416)
                      |++.+..|.|
T Consensus        12 ~~~~~~~i~f   21 (880)
T PRK03918         12 RSHKSSVVEF   21 (880)
T ss_pred             cCccCceEec
Confidence            3343333333

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.48  E-value=6.5  Score=30.59  Aligned_cols=29  Identities=31%  Similarity=0.500  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          364 LSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +..+++.|+.+...+..+|.+|+.+++.|
T Consensus        22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   22 LNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444444444444444444

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.38  E-value=44  Score=32.18  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      +.++++..++.+......++..++..+..|..+...+...|..|+
T Consensus       117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE  161 (237)
T PF00261_consen  117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE  161 (237)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence            444444444444444444444444444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=81.32  E-value=25  Score=38.48  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKF  387 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~  387 (416)
                      +.+++||.++..++.+...+..++..++.+...+..+..+|+.
T Consensus       209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555554444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.25  E-value=18  Score=32.79  Aligned_cols=71  Identities=24%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD---GINSFLLFYYLLLL  414 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd---ALnEaL~~EvqrL~  414 (416)
                      ...+++||.+++.|+.++..+-.+|+.|+..+..|..+...+..+|..+.....-.+   ..+|.|..-|+.|+
T Consensus        13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LE   86 (143)
T PF12718_consen   13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLE   86 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHH
Confidence            344567777777777777777777777777777777777777666665544322211   33456666666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=81.23  E-value=25  Score=36.98  Aligned_cols=87  Identities=20%  Similarity=0.208  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 014879          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN---NELKFRLQAMEQQAQL  398 (416)
Q Consensus       322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN---~ELK~RLqaLEqQaqL  398 (416)
                      ++..+++.+++|..     .-=...+.+|..+...|+.+...|+.+...+.++...+....   .+|+.++..|.++..-
T Consensus        10 n~~~v~~~l~~R~~-----~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~   84 (425)
T PRK05431         10 NPEAVKEALAKRGF-----PLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA   84 (425)
T ss_pred             CHHHHHHHHHhcCC-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            55566666666621     001566777888888888888888888888888887654433   2566666666655444


Q ss_pred             HHHHHHHHHHHHHHh
Q 014879          399 KDGINSFLLFYYLLL  413 (416)
Q Consensus       399 rdALnEaL~~EvqrL  413 (416)
                      -++..+.+.+++..+
T Consensus        85 ~~~~~~~~~~~~~~~   99 (425)
T PRK05431         85 LEAELDELEAELEEL   99 (425)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334445555555443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=81.19  E-value=30  Score=38.15  Aligned_cols=48  Identities=23%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      ...+.+||.++..+......|..++..|..++..|..+...++.+|..
T Consensus       147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~  194 (546)
T KOG0977|consen  147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD  194 (546)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            345677888888888888888888888888888888888888776654

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=81.13  E-value=47  Score=32.90  Aligned_cols=13  Identities=15%  Similarity=-0.325  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHh
Q 014879          401 GINSFLLFYYLLL  413 (416)
Q Consensus       401 ALnEaL~~EvqrL  413 (416)
                      ...+.|+.||+.|
T Consensus       284 ~~~~~l~~ei~~L  296 (297)
T PF02841_consen  284 EEAEKLQKEIQDL  296 (297)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            4455666777766

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=81.10  E-value=25  Score=30.65  Aligned_cols=44  Identities=27%  Similarity=0.364  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ..+|..+++..+.|..-|+..++.+..++..|+.|.+.+|...-
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g   46 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG   46 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999999999987663

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=81.10  E-value=44  Score=34.32  Aligned_cols=83  Identities=23%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-
Q 014879          326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGIN-  403 (416)
Q Consensus       326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALn-  403 (416)
                      .|.-+.+..++-+++.      ++|-.+|..+......|..+-..+..++..|..+-.++-.+++.|-+. ..++...+ 
T Consensus        28 kR~El~~~~~~~~ekR------deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~  101 (294)
T COG1340          28 KRDELRKEASELAEKR------DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNE  101 (294)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3345555555555544      455667777777777777777777777777777777777777776655 35555555 


Q ss_pred             --------HHHHHHHHHhh
Q 014879          404 --------SFLLFYYLLLL  414 (416)
Q Consensus       404 --------EaL~~EvqrL~  414 (416)
                              +.|..++++|+
T Consensus       102 ~~~~~~~~~~ler~i~~Le  120 (294)
T COG1340         102 FNLGGRSIKSLEREIERLE  120 (294)
T ss_pred             hhccCCCHHHHHHHHHHHH
Confidence                    45778888775

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=81.09  E-value=6.8  Score=34.78  Aligned_cols=43  Identities=26%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      .+|-.||.-...|++++..+.+++..|..||+.|-+.|+.|-.
T Consensus        63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS  105 (120)
T KOG3650|consen   63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence            4566677777889999999999999999999999999988743

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=81.07  E-value=71  Score=34.49  Aligned_cols=75  Identities=23%  Similarity=0.208  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH---HHHH
Q 014879          340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN--------------NELKFRLQAMEQQAQL---KDGI  402 (416)
Q Consensus       340 ReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN--------------~ELK~RLqaLEqQaqL---rdAL  402 (416)
                      .-+-++.+..|..+.+.|+++..+|..|...|+.+.+.|..+-              .+|+.|-..+||+++-   +.--
T Consensus       132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a  211 (499)
T COG4372         132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANA  211 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444445555555555555555555544444444444              4444444455555432   2223


Q ss_pred             HHHHHHHHHHhh
Q 014879          403 NSFLLFYYLLLL  414 (416)
Q Consensus       403 nEaL~~EvqrL~  414 (416)
                      .+++++|++++.
T Consensus       212 ~q~r~~ela~r~  223 (499)
T COG4372         212 AQARTEELARRA  223 (499)
T ss_pred             HHHHHHHHHHHH
Confidence            345566666543

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=80.92  E-value=35  Score=33.20  Aligned_cols=17  Identities=24%  Similarity=0.278  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSK  340 (416)
Q Consensus       324 KR~KRiLkNRESArRSR  340 (416)
                      +|+||..+.+.++-.-+
T Consensus        23 ~rLR~~E~ek~~~m~~~   39 (195)
T PF10226_consen   23 RRLRRAEAEKMSLMVEH   39 (195)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56666666555554433

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PRK02119 hypothetical protein; Provisional

Probab=80.90  E-value=14  Score=30.12  Aligned_cols=50  Identities=12%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      -+..||.++..|+.........|..|..-...-..+...|+.+|+.|.++
T Consensus         3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r   52 (73)
T PRK02119          3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK   52 (73)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999988888888888888888888888888777777543

>PRK04406 hypothetical protein; Provisional

Probab=80.70  E-value=16  Score=30.12  Aligned_cols=49  Identities=10%  Similarity=0.133  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      .++.||.++..|+.....+...|..|..-......+...|+.+|+.|.+
T Consensus         5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~   53 (75)
T PRK04406          5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG   53 (75)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557999999999999888888888888888888888888877777744

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=80.53  E-value=7.6  Score=41.95  Aligned_cols=38  Identities=11%  Similarity=0.263  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      .+-+.++..|+.+...|+.++.++.++...+..+.++|
T Consensus        72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeL  109 (475)
T PRK13729         72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKL  109 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            44444555554444444433333333333333333333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=80.45  E-value=20  Score=33.79  Aligned_cols=53  Identities=25%  Similarity=0.263  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       337 rRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ...-++...-+.+|+.+++.+......- .+-+.+.+++..|..++.+|+.+|+
T Consensus        75 ~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen   75 QKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555555544222111 1222233344444444444444444

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=80.34  E-value=14  Score=41.83  Aligned_cols=74  Identities=22%  Similarity=0.147  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhh
Q 014879          341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA-QLKD--GINSFLLFYYLLLL  414 (416)
Q Consensus       341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa-qLrd--ALnEaL~~EvqrL~  414 (416)
                      +|=..-..+|-...+.++.+...|+..+..+..+=+.|..+..+|...--.|..|+ -||.  +..|.|+-||.||.
T Consensus        58 ~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~  134 (717)
T PF09730_consen   58 ERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLE  134 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555554444444442 2222  55677888887774

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=80.33  E-value=9.3  Score=29.61  Aligned_cols=24  Identities=38%  Similarity=0.454  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          369 TILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       369 t~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      ..|+..+..|..+|..|+.++..|
T Consensus        29 ~~Le~~~~~L~~en~~L~~~~~~L   52 (64)
T PF00170_consen   29 EELEEKVEELESENEELKKELEQL   52 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444433333

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-11
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-11
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	5e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	6e-09
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-08
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-07
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	4e-06
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	4e-06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	8e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	1e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
           KR  R++ NR++A  S+ +K  Y+  LE +V  L+ +  TL  ++  L+
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALK 49

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383
           KR K +  NR +A+RS++++  ++  LE+K + L +    L ++VT+L+       +E  
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVA 53

Query: 384 ELKFRLQA 391
           +LK  L A
Sbjct: 54  QLKQLLLA 61

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 55.8 bits (134), Expect = 5e-10
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 296 EFNGEFNDAELKKIWANE------KLAEIALSDPKRAKRILANRQSAARSKERKMRYISE 349
                  D EL  +   E       L++  +   K+ +R L NR  AA  + +++    E
Sbjct: 3   HMGTSLTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEE 62

Query: 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394
           LE++   LQ E   L+++   ++ +   L S+   L+   + + +
Sbjct: 63  LEKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFARTVAR 107

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383
           K  ++ + NR +A++S++RK+  I+ LE+KV+TL+ + + L++   +L+        +  
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR-------EQVA 53

Query: 384 ELKFRLQA 391
           +LK ++  
Sbjct: 54  QLKQKVMN 61

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383
           KR  R   N+ +AA+ + R+      L+ +   L+ E + L  ++  L +       E  
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK-------EKE 54

Query: 384 ELKFRLQA 391
           +L+F L A
Sbjct: 55  KLEFILAA 62

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 313 EKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
               +  +   K+ +R L NR  A   + ++++    LE +   L  +   L  +V+ L 
Sbjct: 16  RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75

Query: 373 RDSAGLTSENNELKFRLQAM 392
           R       E +  K + + +
Sbjct: 76  R-------ERDAYKVKSEKL 88

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 320 LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT 379
                 +KR   NR +    ++RK  ++  LE +V TL+   ++ + +   L++    L 
Sbjct: 4   SDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63

Query: 380 SENNELK 386
            E   LK
Sbjct: 64  EELRILK 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 47/357 (13%), Positives = 103/357 (28%), Gaps = 110/357 (30%)

Query: 105 GHRRSSSDIPLGFSAMIQS-STQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGM 163
            +  S   +      M+Q    Q+ P  +  +       +K         +   R +  +
Sbjct: 190 KNCNSPETVL----EMLQKLLYQIDPNWTSRS--DHSSNIKLRIHS---IQAELRRL--L 238

Query: 164 GERKSEED--VADDLFNEYMNLENIDTLNSSC-----TEDKDMDSRASGSKTNGCESSDN 216
             +  E    V  ++ N     +  +  N SC     T  K +    S + T     S +
Sbjct: 239 KSKPYENCLLVLLNVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLD 292

Query: 217 EVESRVYGRSSSGILSE----KREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESL 272
                +       +L +    + + + R       P     R +S+   +       ES+
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNP-----RRLSI---IA------ESI 337

Query: 273 RLPPG----------GQLSPGNPSDGNLAKMSLEFNGEFNDAELKK-------------- 308
           R               +L+        + + SL        AE +K              
Sbjct: 338 RDGLATWDNWKHVNCDKLT-------TIIESSLN---VLEPAEYRKMFDRLSVFPPSAHI 387

Query: 309 -------IWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEA 361
                  IW +   +++ +   K  K  L  +Q     KE  +  I  +  +++      
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----PKESTI-SIPSIYLELKVKLENE 442

Query: 362 TTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFY--YLLLLHL 416
             L     I+   +   T ++++L            +   ++ +   +  +    HL
Sbjct: 443 YALHRS--IVDHYNIPKTFDSDDL------------IPPYLDQYFYSHIGH----HL 481

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383
           K+ K++  N+ +A R +++K      L  + + L+ +   L  +   L +       E  
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK-------EIQ 54

Query: 384 ELK 386
            LK
Sbjct: 55  YLK 57

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
           SDP   KR   N ++A RS+ RK++ + +LE KV+ L ++   L  +V  L+
Sbjct: 7   SDPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK 57

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381
             +   R   N  +  +S+++      E + KV  L  E   L  +V  L R       E
Sbjct: 13  SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-------E 65

Query: 382 NNELKFRL 389
            + L+   
Sbjct: 66  LSTLRNLF 73

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
           SD  + +R   N  +  +S+++      E + KV  L  E   L  +V  L R+ + L
Sbjct: 13  SDEYKIRRE-RNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 8/76 (10%)

Query: 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSK-ERKMRYISELE-QKVQTLQT 359
            + E  + W  E+   +   D          R+ A +   E   R   ++E  K+     
Sbjct: 82  QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141

Query: 360 EATTLSAQVTILQRDS 375
           +           Q D+
Sbjct: 142 DKAFYQ------QPDA 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.48
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.31
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.27
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.16
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.04
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.97
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.93
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.48
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.45
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.3
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.26
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.47
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	97.02
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.35
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.06
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.01
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.45
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	94.2
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	94.11
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.1
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.72
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.5
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	93.18
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	93.17
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	93.09
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	93.07
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.91
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	92.63
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.6
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	92.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.8
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	91.42
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.41
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.39
4ath_A	83	MITF, microphthalmia-associated transcription fact	91.02
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.0
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	90.94
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	90.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.58
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	90.42
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.42
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.32
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	90.31
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.86
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.57
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	89.43
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	89.39
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	89.11
4ati_A	118	MITF, microphthalmia-associated transcription fact	89.08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	89.07
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	89.06
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	88.98
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	88.15
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	87.99
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	87.74
3m48_A	33	General control protein GCN4; leucine zipper, synt	87.57
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	87.42
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	87.32
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	87.28
2wt7_B	90	Transcription factor MAFB; transcription, transcri	87.21
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	86.85
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	86.77
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	86.53
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.52
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	86.45
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	86.44
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	86.2
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.96
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.73
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.7
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	85.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	85.13
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.13
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	85.04
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	84.83
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.73
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.67
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.43
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	84.43
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	84.32
3u06_A	412	Protein claret segregational; motor domain, stalk	84.29
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	84.28
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.09
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	83.97
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.87
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	83.58
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	83.04
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	82.59
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	82.56
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	82.53
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	82.47
2bni_A	34	General control protein GCN4; four helix bundle, a	82.41
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	82.29
2hy6_A	34	General control protein GCN4; protein design, para	82.26
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	82.21
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	82.14
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	82.12
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	82.01
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	81.78
3bas_A	89	Myosin heavy chain, striated muscle/general contro	81.76
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	81.76
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	81.37
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	81.31
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	81.27
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	80.81
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	80.63
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	80.6
1uo4_A	34	General control protein GCN4; four helix bundle, c	80.46
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	80.36
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	80.24

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.48  E-value=3.9e-14  Score=107.60  Aligned_cols=52  Identities=31%  Similarity=0.512  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      ||.+|+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999999999999999999999999887654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.31  E-value=9.3e-12  Score=96.24  Aligned_cols=58  Identities=22%  Similarity=0.353  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS  380 (416)
Q Consensus       323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s  380 (416)
                      +||.+|+.+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~   58 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF   58 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999877766655543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.27  E-value=1.6e-11  Score=94.01  Aligned_cols=56  Identities=32%  Similarity=0.506  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT  379 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~  379 (416)
                      ||.+|+.+||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999988776655554

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.16  E-value=7.2e-11  Score=90.76  Aligned_cols=55  Identities=33%  Similarity=0.558  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL  378 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L  378 (416)
                      |+.+|..+||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568889999999999999999999999999999999999999998877655544

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.04  E-value=3.5e-10  Score=87.93  Aligned_cols=49  Identities=29%  Similarity=0.400  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          327 KRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       327 KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      ++..+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|..++
T Consensus        12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345699999999999999999999999999999999998888877654

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.97  E-value=1e-09  Score=87.33  Aligned_cols=65  Identities=25%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      ++...||...||.|++..|+||.+||.+||.+|..|+.++..|..++..|..++..|..||.+||
T Consensus         6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E            6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34457899999999999999999999999999999999999988888888888888888887764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.93  E-value=2e-09  Score=83.45  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS  380 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s  380 (416)
                      |+.+++.+||.+|+|+|+||++++++|+.+++.|+.+|..|..++..|+.++..|..
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888999999999999999999999999999999999999999988776666543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.48  E-value=8e-07  Score=71.99  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          320 LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT  379 (416)
Q Consensus       320 l~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~  379 (416)
                      ..|++-..|..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.++..|.
T Consensus        11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666667789999999999999999999999999999999999999998776665553

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.45  E-value=1.1e-06  Score=72.63  Aligned_cols=62  Identities=21%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          320 LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       320 l~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      ..|++-..|..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.++..|..-
T Consensus        11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l   72 (87)
T 1hjb_A           11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL   72 (87)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777789999999999999999999999999999999999999999877666655543

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.30  E-value=1.7e-08  Score=86.18  Aligned_cols=83  Identities=24%  Similarity=0.325  Sum_probs=56.3

Q ss_pred             ChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       302 s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      +..|++..+.  .|..--...-|.+||.++||.+|+.||.||++.+.+||.++..|+.+...|..++..       |..|
T Consensus        17 ~v~elN~~L~--~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~-------l~~E   87 (107)
T 3a5t_A           17 SVRELNQHLR--GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS-------MKLE   87 (107)
T ss_dssp             CHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSH-------HHHT
T ss_pred             CHHHHHHHHh--CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            4556666663  333333344689999999999999999999999999998887777666655555444       4455


Q ss_pred             HHHHHHHHHHHH
Q 014879          382 NNELKFRLQAME  393 (416)
Q Consensus       382 N~ELK~RLqaLE  393 (416)
                      ...||.++++|.
T Consensus        88 ~~~lk~k~e~L~   99 (107)
T 3a5t_A           88 LDALRSKYEALQ   99 (107)
T ss_dssp             TTSSSSCC----
T ss_pred             HHHHHHHHHHHH
Confidence            555555555554

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.26  E-value=4.5e-06  Score=69.45  Aligned_cols=82  Identities=18%  Similarity=0.270  Sum_probs=58.4

Q ss_pred             ChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       302 s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      +-.|++..+.  .|..--...-|..||-++||.+|+.+|.||...+.+||..+..|+.+...|.       +++..+..|
T Consensus         7 sVreLN~~L~--gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~-------~e~~~~~~e   77 (90)
T 2wt7_B            7 SVRELNRHLR--GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK-------QEVSRLARE   77 (90)
T ss_dssp             CHHHHHTTCT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             CHHHHHHHHc--CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            3456666663  3332223456889999999999999999999999999987777666555554       455556677


Q ss_pred             HHHHHHHHHHH
Q 014879          382 NNELKFRLQAM  392 (416)
Q Consensus       382 N~ELK~RLqaL  392 (416)
                      -..+|+++++|
T Consensus        78 ~d~~k~k~~~L   88 (90)
T 2wt7_B           78 RDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            77777777665

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.47  E-value=0.00019  Score=52.25  Aligned_cols=37  Identities=30%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS  380 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s  380 (416)
                      |.|+.+||.+++.|+..|+.|..++..|++++++|..
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq   38 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH   38 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            5899999999999999999999999998877776653

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=97.02  E-value=0.00016  Score=60.41  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=46.4

Q ss_pred             cccChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          299 GEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQ  352 (416)
Q Consensus       299 g~~s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~  352 (416)
                      ...+-+|++..++...|.+--+..-|.+||..+||.+|+++|+||...+++|+.
T Consensus        37 v~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           37 SEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            345567888899999998888888999999999999999999999999988875

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.08  E-value=0.081  Score=43.30  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      .-++.||.||+.+-...+-|..++..|..++..|..+|.+++..-..|.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~   54 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE   54 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3467788888888777777777777777777777777777554444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.62  E-value=0.14  Score=51.72  Aligned_cols=67  Identities=15%  Similarity=0.077  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      ..++.+.+.++.+++.+..+++..++++..+..|..+|+.+++.+.++.+.-...+..+++|++.|+
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555555555555555566666666665555443322244556666666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.35  E-value=0.25  Score=49.80  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      +.|+..++.++.+.+.+..++..++++...++.+.+.|+.++..||.+.+-+....+.+++|++.+.
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~  571 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR  571 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            6677777777777777777777777777777777777888888888877777677777888877764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.06  E-value=0.16  Score=44.64  Aligned_cols=54  Identities=15%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          342 RKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      +.++.++.|+.+++.+..|...|..++..++.++..+..++.+|+.++..|+.+
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~  125 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN  125 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444557888899998888988899888888888888888888888888888665

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.01  E-value=0.088  Score=41.14  Aligned_cols=39  Identities=36%  Similarity=0.436  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      ..-|.||++|..-|+.|+.++..+|+..+.|..||..|+
T Consensus        23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A           23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            345789999999999999999999999999999999986

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.45  E-value=1.8  Score=35.85  Aligned_cols=73  Identities=11%  Similarity=0.037  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          342 RKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE-------NNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE-------N~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      .-....+.+|.++..++.++..+-.+|..|++.+..|..+       ..+.+.+|..-+..+.-.++-+.+|..-||-|+
T Consensus        20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3334444455555555555544444444444444444444       444444444444455555567778888887765

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=94.20  E-value=0.67  Score=41.81  Aligned_cols=59  Identities=17%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL  406 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL  406 (416)
                      -+.+-..-++.|+.|...|..++..++.....|..||+.|-.|+  |.+..+=.+++|+++
T Consensus        90 el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW--M~rk~qEAe~MN~an  148 (152)
T 3a7p_A           90 VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW--LKKTEKETEAMNSEI  148 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence            34444567788999999999999999999999999999996553  333344455666665

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=94.11  E-value=0.71  Score=37.98  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 014879          352 QKVQTLQTEATTLSAQVTILQRDSA-----GLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       352 ~KVq~LqsENs~Ls~Qlt~Lqre~~-----~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL~  414 (416)
                      .||..|+.+|..|..++..++.+..     ....+..+|+.+|..+... ++|. ...+.|..++.+|+
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~-~e~dnl~~~~~~~k   90 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE-VERDNLAEDIMRLR   90 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            5788888888888888888776543     2466777777777776655 3443 55666888888775

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.10  E-value=1.8  Score=39.55  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 014879          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--AQLKDG  401 (416)
Q Consensus       324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--aqLrdA  401 (416)
                      +.+..+.+-=+.=++.|.+-.+.+.+|+.+|..|+.|...+...+..++.++..|......|...-..|+-.  -.|+ +
T Consensus        69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLK-a  147 (168)
T 3o0z_A           69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLK-S  147 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-H
Confidence            334445555556677888888889999999999999988888888776655555555555555444444433  5677 6


Q ss_pred             HHHHHHHHHH
Q 014879          402 INSFLLFYYL  411 (416)
Q Consensus       402 LnEaL~~Evq  411 (416)
                      +...+..||.
T Consensus       148 lQ~~~eqE~~  157 (168)
T 3o0z_A          148 LQQRLEQEVN  157 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6677777764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.72  E-value=1.2  Score=49.97  Aligned_cols=53  Identities=19%  Similarity=0.183  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          341 ERKMRYISELEQKVQTLQTEATTLSAQVT----ILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt----~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ....+-+++|+.+++.+..|...|..++.    .|+.....|..||..|++++..|+
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555544433    333445567777777777777766

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.50  E-value=0.66  Score=37.94  Aligned_cols=47  Identities=28%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      -|.-|.-+|..|+.+|..|..++..++.....|..||..|++.....
T Consensus        21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w   67 (81)
T 2jee_A           21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW   67 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            45556667777777777777777777777777777887777666655

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=93.18  E-value=0.14  Score=41.71  Aligned_cols=50  Identities=24%  Similarity=0.270  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      .+++..|++.++.+|+.|..+|..|+.+...-..+-..++..|..+-++.
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L   57 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL   57 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788888888888888888888888877777777777777665554

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=93.17  E-value=0.78  Score=36.73  Aligned_cols=49  Identities=14%  Similarity=0.224  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      .++..|++.++.+|+.|..+|..|+.+...-..+-..++..|..+-++.
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L   51 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL   51 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678889999999999999999999998888888888877777766654

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=93.09  E-value=0.4  Score=40.76  Aligned_cols=49  Identities=27%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSA-------QVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~-------Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .-+||.++..++.||..|..       ++..|+.++..|..||..|++.-+...++
T Consensus        39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~   94 (104)
T 3s9g_A           39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ   94 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            34678888888777777766       77777777777777777776655555444

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=93.07  E-value=0.22  Score=40.03  Aligned_cols=51  Identities=18%  Similarity=0.096  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      ..|.+||.|+..++.-...|...|+.-+++...|..+.+.|..|+..++..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~   64 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST   64 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            467999999999999999999999999999999999999999999988754

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.91  E-value=1.1  Score=41.54  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          367 QVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      +++.|+.++..|...+..|+.+|..|||.
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~  117 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQA  117 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666666666666654

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=92.63  E-value=0.48  Score=38.53  Aligned_cols=40  Identities=20%  Similarity=0.081  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          375 SAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       375 ~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      .+.+..+|.+|+.+|+.|+++..=.-.-.+.++.|++++.
T Consensus        15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A           15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566666666666666554444444556666666654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.60  E-value=3.8  Score=33.86  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 014879          335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS-------AGLTSENNELKFRLQAME  393 (416)
Q Consensus       335 SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~-------~~L~sEN~ELK~RLqaLE  393 (416)
                      .+...+.++-.-|..|.++++.|+.+...+..++...+..+       +....++..|..|||-||
T Consensus        34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34444455555666666666666666555555555444322       222335555555555554

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=92.38  E-value=0.0067  Score=50.59  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             cccChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          299 GEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRY  346 (416)
Q Consensus       299 g~~s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~Y  346 (416)
                      ...+-+|++..++...|.+.-+..-+.+||..+||++|+++|+||...
T Consensus        41 v~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~   88 (91)
T 2kz5_A           41 VNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET   88 (91)
T ss_dssp             HHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred             HHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            345567888888888888877778899999999999999999999753

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.80  E-value=0.98  Score=50.75  Aligned_cols=11  Identities=27%  Similarity=0.594  Sum_probs=7.7

Q ss_pred             hhHHHHHhhcc
Q 014879          173 ADDLFNEYMNL  183 (416)
Q Consensus       173 ~~dl~~~ym~l  183 (416)
                      -+||+..|--|
T Consensus       704 ~~eF~~RY~~L  714 (1080)
T 2dfs_A          704 YQEFFSRYRVL  714 (1080)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHH
Confidence            46788888665

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=91.42  E-value=0.95  Score=33.47  Aligned_cols=44  Identities=30%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      +||.+|..|+.-...|..+++.|..++.   .-...||+||..||.+
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~   45 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQ   45 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence            5677777777766666666666554444   4456799999999875

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.41  E-value=5.2  Score=32.83  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 014879          340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA-------MEQQAQLKDGINSFLLFYYLL  412 (416)
Q Consensus       340 ReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa-------LEqQaqLrdALnEaL~~Evqr  412 (416)
                      +..-....+.+|.++..++.++..+...+..|++.+..|..+...+..+|..       -+..+.-.++-..+|..-||-
T Consensus        18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445556666666666666666666666666665555555555444443       333334444556677777776


Q ss_pred             hh
Q 014879          413 LL  414 (416)
Q Consensus       413 L~  414 (416)
                      |+
T Consensus        98 lE   99 (101)
T 3u59_A           98 VE   99 (101)
T ss_dssp             HT
T ss_pred             Hc
Confidence            64

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.39  E-value=1.6  Score=38.16  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      +.=.+.+++++.++..|..+...+..++..+.+++..|..++++|..++..||.
T Consensus        78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666777777777777777777777777777777777777777777753

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=91.02  E-value=0.8  Score=37.59  Aligned_cols=45  Identities=27%  Similarity=0.386  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL  398 (416)
Q Consensus       343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL  398 (416)
                      -..||..|...++.+..+.           .+...|...|..|..|+|.||.|+++
T Consensus        37 svdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~~   81 (83)
T 4ath_A           37 SVDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA   81 (83)
T ss_dssp             HHHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            4789888877766555443           45556889999999999999999875

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.00  E-value=5.7  Score=32.58  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ  372 (416)
Q Consensus       336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq  372 (416)
                      |.....++-.-|..|.++++.|+.+...+..++..++
T Consensus        35 ~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~   71 (101)
T 3u59_A           35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ   71 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555555555555555555444444444

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=90.94  E-value=2.4  Score=34.75  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYY  410 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Ev  410 (416)
                      ++.-.+.+.|-.|...|+-+++.++.+-..-....+.=|..|+.|.+|...+++..+.|+.|+
T Consensus        15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455566667778888888888888888888888888888999999999999999888888876

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=90.88  E-value=0.8  Score=36.69  Aligned_cols=43  Identities=19%  Similarity=0.145  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          372 QRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       372 qre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      ..+.+.+..+|.+|+.+|+.|+++..=.-.-.+.++.|++++.
T Consensus         6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~   48 (72)
T 3cve_A            6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL   48 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455566666666666666554333344555566665553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.58  E-value=2  Score=53.59  Aligned_cols=63  Identities=13%  Similarity=0.073  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879          351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      +.+++.++.+...|.+++..|+.++..+..|...|+.+++..+........|.+.|..|-.|-
T Consensus      2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A         2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence            334445556666677777778888888888888888888888888888888888888887663

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=90.42  E-value=3  Score=37.62  Aligned_cols=66  Identities=18%  Similarity=0.083  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL  413 (416)
                      ..|+.++..|+.+...-...+..|+.++..|..|++.+..++..|+.. .+|-+-+-..-..|..+|
T Consensus        78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M  144 (152)
T 3a7p_A           78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAM  144 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444556666666666677777777777776663 344444444444444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.42  E-value=1.3  Score=37.90  Aligned_cols=45  Identities=18%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      ..|+..+..|..++..|...|..|++.++.|....+..-.-|+.|
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~   82 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF   82 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence            334444444444444444444444444444444444443333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.32  E-value=5.4  Score=36.46  Aligned_cols=49  Identities=16%  Similarity=0.290  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      -.-.|.||..  .||...++.++..+..|..++..|+.....|..+...|.
T Consensus        27 E~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ   75 (168)
T 3o0z_A           27 DTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ   75 (168)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444443  444444555555555555555544444444444444443

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=90.31  E-value=0.91  Score=36.64  Aligned_cols=47  Identities=23%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ  397 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq  397 (416)
                      ++||.||..|+.-...|..+++.|..++.   .-...||+||..||.+..
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~   49 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLK   49 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence            45777777777777667666666655544   445679999999998765

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.86  E-value=6.7  Score=38.63  Aligned_cols=67  Identities=16%  Similarity=0.052  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          345 RYISELEQKVQTLQTEATTLSAQ-------VTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Q-------lt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      .+...|++++..+|.--..+..|       +-.|+.-   |..+...-..|++.+|.+..-..+..+-+..||.||+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444445444444444444443       3334433   2333333334777777765544455566688888886

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=89.43  E-value=1.6  Score=36.84  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRD  374 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre  374 (416)
                      .+..|..+|..|+.||..|..++..|+-+
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~   41 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQ   41 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666665555555533

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.39  E-value=1.6  Score=37.15  Aligned_cols=27  Identities=33%  Similarity=0.465  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      |.+|-+.|+.|+.|...|..+...|+.
T Consensus        38 i~elrr~iq~L~~el~~l~~~~~~LE~   64 (129)
T 3tnu_B           38 ISEMNRMIQRLRAEIDNVKKQCANLQN   64 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            444444444444444444444433333

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=89.11  E-value=1.5  Score=32.28  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR  388 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R  388 (416)
                      .+..||.+|..|+.||.+|..+.-.-..-..-|..|...|+.+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk   46 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK   46 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            4667888888888888888766544333333444444444433

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=89.08  E-value=0.17  Score=43.15  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          374 DSAGLTSENNELKFRLQAMEQQAQL  398 (416)
Q Consensus       374 e~~~L~sEN~ELK~RLqaLEqQaqL  398 (416)
                      +...|..+|..|..|||.||.|++.
T Consensus        92 ~~~~l~~~n~~L~~riqeLE~~a~~  116 (118)
T 4ati_A           92 RQKKLEHANRHLLLRVQELEMQARA  116 (118)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999998874

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=89.07  E-value=2.5  Score=47.47  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      .+|+.+++.++.+...+..++..++.+...|..+..+|+
T Consensus       860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444333

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=89.06  E-value=1.3  Score=32.40  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFR  388 (416)
Q Consensus       355 q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R  388 (416)
                      ..|+.....|..++..|++++..|..||.-|++-
T Consensus         6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv   39 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI   39 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3445555555555555555555555555544443

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=88.98  E-value=2.4  Score=32.19  Aligned_cols=45  Identities=20%  Similarity=0.268  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      .+.|-++|+.|..||+.|+.++..=-.+...|+.|-..+|.-+..
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~   49 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ   49 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence            367888999999999999999888778888888877766654443

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=88.15  E-value=4.6  Score=41.90  Aligned_cols=46  Identities=17%  Similarity=0.333  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQR-----------DSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqr-----------e~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      |..+++.|+++.+.++.+|..+..           +...|..|-++|+.+|..|+.+
T Consensus        82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~  138 (501)
T 1wle_A           82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPK  138 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666655442           3345666666666666666544

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=87.99  E-value=0.63  Score=44.15  Aligned_cols=39  Identities=21%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             HhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          315 LAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQK  353 (416)
Q Consensus       315 LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~K  353 (416)
                      +..+..-++||.+|+|+-=.-=.+.|+-|..-++++-.+
T Consensus       111 l~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~  149 (250)
T 2ve7_C          111 TADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQ  149 (250)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677889999999877666666766666654444333

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=87.74  E-value=1.3  Score=33.85  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          366 AQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       366 ~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .....|+.++..|..+|.+|+.+|+.|+.+
T Consensus        23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E   52 (63)
T 1ci6_A           23 AEQEALTGECKELEKKNEALKERADSLAKE   52 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777777777777655

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=87.57  E-value=0.6  Score=32.54  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      |..||.||..|-.+|+.|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            568999999999999998888877653

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=87.42  E-value=0.72  Score=32.30  Aligned_cols=28  Identities=29%  Similarity=0.249  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      .|..||.||..|-.+|+.|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4678999999988888888888776653

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=87.32  E-value=5  Score=32.24  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          367 QVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       367 Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      +...++.....|..||..|+.+|+.|
T Consensus        37 r~~e~~~r~~~L~~eN~~L~~~v~~L   62 (78)
T 1gu4_A           37 RNLETQHKVLELTAENERLQKKVEQL   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666666666666666554

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=87.28  E-value=1.1  Score=37.98  Aligned_cols=32  Identities=31%  Similarity=0.385  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          360 EATTLSAQVTILQRDSAGLTSENNELKFRLQA  391 (416)
Q Consensus       360 ENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa  391 (416)
                      +...|..+|..|+.++..|..++..|..+|..
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555543

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=87.21  E-value=1.2  Score=37.02  Aligned_cols=30  Identities=23%  Similarity=0.173  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          363 TLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       363 ~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      .|..++..|+.+...|..||.+++..+..+
T Consensus        52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~   81 (90)
T 2wt7_B           52 HLENEKTQLIQQVEQLKQEVSRLARERDAY   81 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444333

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=86.85  E-value=0.71  Score=44.54  Aligned_cols=39  Identities=21%  Similarity=0.351  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      +.+|+.++..|+..|..|...++.+++++..|..|+..|
T Consensus        56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL   94 (251)
T 3m9b_A           56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   94 (251)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555555444444444444444444444333

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=86.77  E-value=0.82  Score=36.12  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSA  366 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~  366 (416)
                      ..||..|+.+++.|+.+...|..
T Consensus        46 i~YI~~L~~~~~~l~~e~~~L~~   68 (83)
T 1nkp_B           46 TEYIQYMRRKNHTHQQDIDDLKR   68 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666666665555544444333

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=86.53  E-value=6.3  Score=36.71  Aligned_cols=64  Identities=20%  Similarity=0.179  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL-----QAM-EQQAQLKDGINSFLLFYYLL  412 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL-----qaL-EqQaqLrdALnEaL~~Evqr  412 (416)
                      .+|+.++..|+.+|..|...+..|..++..+..+..++...|     .-| |..++|| .|.+.|-.|+|.
T Consensus       135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR-~lq~~Ll~~~~~  204 (213)
T 1ik9_A          135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIR-SLHNKLLNAAQE  204 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHH
Confidence            355566666666666666666666666666666555554332     112 2335666 344344444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.52  E-value=2.3  Score=36.42  Aligned_cols=26  Identities=15%  Similarity=0.185  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      ..|+.+++.+...+..|..++..++.
T Consensus        48 q~L~~el~~l~~~~~sLE~~l~e~e~   73 (131)
T 3tnu_A           48 QNLEIELQSQLSMKASLENSLEETKG   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34444444444444444444444443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=86.45  E-value=1.9  Score=43.20  Aligned_cols=53  Identities=17%  Similarity=0.087  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       355 q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      ..|+.+...|..++..|++++..+..++.+|++++...+       .+...|+.++|.|+
T Consensus         6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~rr~l~n~~~elk   58 (403)
T 4etp_A            6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-------TVRRTLHNELQELR   58 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Confidence            334444444444444444444445555555544444333       34445577777665

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=86.44  E-value=2.6  Score=44.54  Aligned_cols=44  Identities=11%  Similarity=0.250  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE  381 (416)
Q Consensus       338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE  381 (416)
                      .....+.+|-++||++++.|+.+...-..+|..||..+..+..+
T Consensus       103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k  146 (562)
T 3ghg_A          103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD  146 (562)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666677776666666655555555555444444444

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=86.20  E-value=1.2  Score=31.48  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRD  374 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre  374 (416)
                      .|..||.||+.|-.+++.|..++..|+.-
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l   30 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKK   30 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            46789999999999999888888876643

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.96  E-value=2.1  Score=45.22  Aligned_cols=61  Identities=13%  Similarity=0.079  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014879          328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVT-ILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       328 RiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt-~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      .+.+||..+-.-=+-+++|   |..++..-. +|.....|++ .|+++++-|..+.+.-..+|+.|
T Consensus        75 dlsKnsKdseqy~k~~~E~---Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvL  136 (562)
T 3ghg_A           75 EYQKNNKDSHSLTTNIMEI---LRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLL  136 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---TSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhchhHHHHHHHHHHH---HHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555554443333333   323333322 3334445555 55555555555554444555554

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.73  E-value=3.8  Score=35.72  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          354 VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       354 Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      |+.|+.|+.+|..+|..+..+...|..+|..|..|+
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence            444444444444444444444444445555444444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.70  E-value=13  Score=31.53  Aligned_cols=29  Identities=10%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      |..|+.+++.++..+..|..++..++.++
T Consensus        45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~   73 (129)
T 3tnu_B           45 IQRLRAEIDNVKKQCANLQNAIADAEQRG   73 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            56667777777777777776666665544

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=85.18  E-value=13  Score=31.90  Aligned_cols=48  Identities=21%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      +-+..-+.||.+|+.+|..|+.|...-+.+...+.-++..|..|...|
T Consensus        33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           33 NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346667788888888888888887776666555554455555444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.13  E-value=15  Score=36.22  Aligned_cols=30  Identities=20%  Similarity=0.144  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          364 LSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      +.+.....+++...|..||..|+..++.+.
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (487)
T 3oja_A          433 AIRDWDMYQHKETQLAEENARLKKLNGEAD  462 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence            334444444444444455555544444443

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=85.13  E-value=1.1  Score=31.33  Aligned_cols=28  Identities=7%  Similarity=0.209  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      .|..||.||+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4678999999999999888888876653

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=85.04  E-value=1.1  Score=31.79  Aligned_cols=29  Identities=24%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRD  374 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre  374 (416)
                      .|..||.||..|..+++.|..++..|+.-
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35789999999999999888888877644

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=84.83  E-value=1.6  Score=34.84  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDS  375 (416)
Q Consensus       343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~  375 (416)
                      -..||..|+.+.+.|+.|...|..++..|+++.
T Consensus        45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L   77 (80)
T 1nlw_A           45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888888887777777666655555554443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.73  E-value=13  Score=29.32  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL  389 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL  389 (416)
                      ..++.++.++...+..+..+...+..|++.+..|..+...+..+|
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l   64 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=84.67  E-value=15  Score=30.25  Aligned_cols=41  Identities=15%  Similarity=0.293  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL  385 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL  385 (416)
                      +.+.+||..-..+..+...+..+...|..+-...-.+-+.+
T Consensus        25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~   65 (96)
T 3q8t_A           25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF   65 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33444444444444444444444444433333333333444

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.43  E-value=8.8  Score=37.78  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          367 QVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       367 Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      ++..-+.++..|+.|..+|.++|+.+
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (471)
T 3mq9_A          437 EKAQGQKKVEELEGEITTLNHKLQDA  462 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444433

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=84.43  E-value=6.2  Score=40.24  Aligned_cols=46  Identities=13%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTILQR---DSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~Lqr---e~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      |..+++.|+.+.+.++.+|..+..   +...|..+-++|+.+|..++.+
T Consensus        43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   91 (455)
T 2dq0_A           43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE   91 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555554332   2345667777777777776654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=84.32  E-value=2.9  Score=31.39  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          367 QVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      .+..|+.+...|..+|.+|+.+|+.|+.
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555666666666665555543

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=84.29  E-value=3  Score=42.11  Aligned_cols=53  Identities=21%  Similarity=0.042  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879          355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL  414 (416)
Q Consensus       355 q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~  414 (416)
                      ..|+.|...|..++..|++++..+..|+.+++++|...       +.+...|..+++.|+
T Consensus         6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~~~rr~l~n~~~~l~   58 (412)
T 3u06_A            6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-------NMERKELHNTVMDLR   58 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Confidence            45555555666666666666666666666666555442       234445666776664

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=84.28  E-value=4.1  Score=30.47  Aligned_cols=37  Identities=16%  Similarity=0.208  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKF  387 (416)
Q Consensus       351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~  387 (416)
                      |.++..|..-|..|..+++.|+..|..+..|+..|+.
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~   39 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK   39 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            6788888899999999999999999998888766643

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=84.09  E-value=1.8  Score=30.18  Aligned_cols=27  Identities=7%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      |..||.||+.|-.+|..|..++..|+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578999999999998888888876653

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=83.97  E-value=2  Score=32.27  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          364 LSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      |..++..|+.++..|..++.+|+.+|.
T Consensus        24 Lk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           24 LRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333334444445555666655543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.87  E-value=10  Score=32.35  Aligned_cols=30  Identities=27%  Similarity=0.307  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSA  376 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~  376 (416)
                      |.+|-..|+.|+.|...|..+...|+..+.
T Consensus        40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~   69 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQSQLSMKASLENSLE   69 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444444444444444444444444444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=83.58  E-value=24  Score=31.58  Aligned_cols=16  Identities=25%  Similarity=-0.049  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHhhcC
Q 014879          401 GINSFLLFYYLLLLHL  416 (416)
Q Consensus       401 ALnEaL~~EvqrL~ql  416 (416)
                      +-+..|..||.||..|
T Consensus       140 ~~~~~~~~~~~~~~~~  155 (155)
T 2efr_A          140 SKNYHLENEVARLKKL  155 (155)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHHhhcC
Confidence            5566788999999765

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=83.04  E-value=4.3  Score=37.78  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ  390 (416)
Q Consensus       344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq  390 (416)
                      ++.++.-+.-|+.|+.||..|..|+...+.++..|..+...|+.++.
T Consensus        12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~   58 (190)
T 4emc_A           12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK   58 (190)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34455556678888888888888888766666666665555555553

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=82.59  E-value=24  Score=36.56  Aligned_cols=69  Identities=16%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE-----------NNELKFRLQAMEQQAQLKDGINSFLLFYYLLL  413 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE-----------N~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL  413 (416)
                      ..+.+|..+...++.+...|.++...+.++...++..           -.+|+.++..|..+.+--++....+.+|++.+
T Consensus        70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~  149 (501)
T 1wle_A           70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR  149 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567777788888888888888888888887776543           23666666666666554445555566666554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=82.56  E-value=18  Score=38.24  Aligned_cols=73  Identities=21%  Similarity=0.213  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 014879          338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAG-LTSENNELKFRLQAMEQQAQLKD---GINSFLLFYYLLL  413 (416)
Q Consensus       338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~-L~sEN~ELK~RLqaLEqQaqLrd---ALnEaL~~EvqrL  413 (416)
                      ..+++.++.-.-+|.+-+.++.....|.+++.   ++... +...++-|..+|+.  |...|++   ...+.|+.||+.|
T Consensus       505 ~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme---~~~~~~~~e~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~ei~~l  579 (592)
T 1f5n_A          505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKME---NDRVQLLKEQERTLALKLQE--QEQLLKEGFQKESRIMKNEIQDL  579 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555433   33333 33344444444433  1222222   5667888899888


Q ss_pred             hc
Q 014879          414 LH  415 (416)
Q Consensus       414 ~q  415 (416)
                      .+
T Consensus       580 ~~  581 (592)
T 1f5n_A          580 QT  581 (592)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=82.53  E-value=4.8  Score=32.40  Aligned_cols=42  Identities=19%  Similarity=0.235  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ++..|+....--..-...|.-+...|.-||+-|.+||+.|.+
T Consensus        33 eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           33 EIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            333344333333444556677788899999999999998865

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=82.47  E-value=19  Score=31.26  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          348 SELEQKVQTLQTEATTLSAQVTILQRDSAGL  378 (416)
Q Consensus       348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L  378 (416)
                      .+|+.+++.|+.+|..|..++..++.++..|
T Consensus        53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l   83 (155)
T 2oto_A           53 EELEKAKQALEDQRKDLETKLKELQQDYDLA   83 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777777777776666544

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=82.41  E-value=1.6  Score=30.64  Aligned_cols=28  Identities=7%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      .|..||.||+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4678999999999999888888876653

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=82.29  E-value=2.3  Score=29.61  Aligned_cols=27  Identities=11%  Similarity=0.228  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      |..||.||+.|-.++..|..++..|+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            578999999999999888888876653

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=82.26  E-value=1.6  Score=30.58  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQR  373 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqr  373 (416)
                      .+..||.||+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999888888877654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=82.21  E-value=31  Score=31.85  Aligned_cols=68  Identities=22%  Similarity=0.239  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH--HHHHHHHHHHhh
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--------AQLKDGI--NSFLLFYYLLLL  414 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--------aqLrdAL--nEaL~~EvqrL~  414 (416)
                      +..|+..+..|+..+..|..+|..|+..++.|....+.+..-|+.|+..        +-|..-|  -+.|+.++|||+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLk  167 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLK  167 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777777777777777777777766665555444432        2222211  345666677765

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=82.14  E-value=24  Score=30.37  Aligned_cols=45  Identities=22%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014879          334 QSAARSKERKMRYISELEQKVQTLQT---EATTLSAQVTILQRDSAGL  378 (416)
Q Consensus       334 ESArRSReRKk~YleELE~KVq~Lqs---ENs~Ls~Qlt~Lqre~~~L  378 (416)
                      .+|...=..|+..|++|..++..+..   ...-|.+|+.....++..=
T Consensus        34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aE   81 (110)
T 2v4h_A           34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE   81 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34444445566666677666666665   4555666666666666543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=82.12  E-value=23  Score=30.27  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          366 AQVTILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       366 ~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      .+++.||.+++.|..+|..|+.+|..|||.
T Consensus        35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~   64 (111)
T 2v66_B           35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA   64 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356677778888888888888888888775

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=82.01  E-value=1.9  Score=30.21  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          364 LSAQVTILQRDSAGLTSENNELKFRLQAME  393 (416)
Q Consensus       364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE  393 (416)
                      ++.++...+++...|..+|..|.+++..||
T Consensus         5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le   34 (34)
T 1a93_B            5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX   34 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence            455666667777777777777777766654

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=81.78  E-value=13  Score=29.90  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014879          347 ISELEQKVQTLQTEATTLSAQVTILQRDSA--------------GLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYL  411 (416)
Q Consensus       347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~--------------~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~Evq  411 (416)
                      |.+|..+|..+..+|..|..++..++....              .+.++-..||.-+..+... ..|. +..+.|++|+.
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE-~kvesL~eEl~   80 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLE-RKVESLQEEIA   80 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            345556666666666665555555444333              2333333344333332222 3444 66778899988


Q ss_pred             HhhcC
Q 014879          412 LLLHL  416 (416)
Q Consensus       412 rL~ql  416 (416)
                      =|+++
T Consensus        81 fLkk~   85 (86)
T 3swk_A           81 FLKKL   85 (86)
T ss_dssp             HHTTC
T ss_pred             HHhhc
Confidence            87754

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=81.76  E-value=19  Score=29.01  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ  394 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq  394 (416)
                      ....+||.+...|..+.+.|..|++.++..+..|.....+|..+|..|+.
T Consensus        35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~   84 (89)
T 3bas_A           35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK   84 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467889999999999999999999999999999998888888887753

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=81.76  E-value=1.6  Score=42.11  Aligned_cols=42  Identities=12%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM  392 (416)
Q Consensus       351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL  392 (416)
                      |.+++.|+.++..|..++..|...+..+..|...||.+|+.|
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL   94 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   94 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555555555555555555555555554444

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=81.37  E-value=22  Score=35.80  Aligned_cols=51  Identities=14%  Similarity=0.252  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 014879          345 RYISELEQKVQTLQTEATTLSAQVTILQ--------RDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lq--------re~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      ..+.+|..+-..++.+...|.++...+.        .+...|..+-++|+.+|..++.+
T Consensus        28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (421)
T 1ses_A           28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEA   86 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444333        33456777777777777777654

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=81.31  E-value=13  Score=30.39  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          369 TILQRDSAGLTSENNELKFRLQAMEQQ  395 (416)
Q Consensus       369 t~Lqre~~~L~sEN~ELK~RLqaLEqQ  395 (416)
                      ..++.+...|..||..|+.+|+.|+.+
T Consensus        39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E   65 (87)
T 1hjb_A           39 LETQHKVLELTAENERLQKKVEQLSRE   65 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555556666665555555444

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=81.27  E-value=3.8  Score=33.11  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 014879          344 MRYISELEQKVQTLQTEA  361 (416)
Q Consensus       344 k~YleELE~KVq~LqsEN  361 (416)
                      ..||..|+.+.+.++.+.
T Consensus        51 ~~YI~~L~~~~~~l~~~~   68 (88)
T 1nkp_A           51 TAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            356666555555544443

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=80.81  E-value=2.5  Score=30.04  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          358 QTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       358 qsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      -.||.+|...++.-+.++..|..||.+|+
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            35899999999999999999999999985

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=80.63  E-value=8.8  Score=29.65  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTL  364 (416)
Q Consensus       330 LkNRESArRSReRKk~YleELE~KVq~LqsENs~L  364 (416)
                      -+||.+++++|.|=+..++-...-...-..||..|
T Consensus         7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rl   41 (63)
T 2c9l_Y            7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            68999999999998877666554444444455444

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=80.60  E-value=15  Score=29.83  Aligned_cols=64  Identities=23%  Similarity=0.100  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          349 ELEQKVQTLQTEATTLSAQV-------TILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLL  412 (416)
Q Consensus       349 ELE~KVq~LqsENs~Ls~Ql-------t~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Evqr  412 (416)
                      .+-..|+.|-.||++|.+.-       ..|..+...|..|+..|+..+.++.+...--..-+.-|.+|++|
T Consensus         6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr   76 (77)
T 2w83_C            6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556777777777766532       34566778888888888888888776532222334445556554

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=80.46  E-value=2  Score=30.09  Aligned_cols=27  Identities=7%  Similarity=0.255  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQ  372 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lq  372 (416)
                      .|..||.||+.|-.+|..|..++..|+
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk   28 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            357899999999998888888877665

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=80.36  E-value=9.4  Score=35.52  Aligned_cols=51  Identities=14%  Similarity=0.257  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA  396 (416)
Q Consensus       346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa  396 (416)
                      |-.-+|.++..-....+.|..++..|.+++.....|+..|+.+|++++++.
T Consensus         7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~   57 (190)
T 4emc_A            7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV   57 (190)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333444444444444555555555555555555555555555555555443

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=80.24  E-value=4.5  Score=31.19  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK  386 (416)
Q Consensus       351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK  386 (416)
                      |+++..|...|-.|..++..|+.+|.....|+..|.
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~   45 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN   45 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888888888899988888888888877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	416
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	94.58
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	84.06
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	82.3

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.58  E-value=0.0046  Score=47.96  Aligned_cols=50  Identities=22%  Similarity=0.293  Sum_probs=41.2

Q ss_pred             ccChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISE  349 (416)
Q Consensus       300 ~~s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleE  349 (416)
                      ..+-+|.+..++...|.|.-+.=-+-+||.=+|+.+|+++|+||....++
T Consensus        24 ~lpv~eFne~l~~~~Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          24 EMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCHHHHHHHHHhCCCCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            44567778888887787777666789999999999999999999987654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=1  Score=33.95  Aligned_cols=6  Identities=17%  Similarity=0.041  Sum_probs=2.4

Q ss_pred             HHHHHH
Q 014879          346 YISELE  351 (416)
Q Consensus       346 YleELE  351 (416)
                      ++++|.
T Consensus        24 ~f~~Lr   29 (88)
T d1nkpa_          24 SFFALR   29 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            334443

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=82.30  E-value=2.9  Score=32.34  Aligned_cols=48  Identities=19%  Similarity=0.317  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879          350 LEQKVQTLQTEATTLSAQVTIL-QRDSAGLTSENNELKFRLQAMEQQAQ  397 (416)
Q Consensus       350 LE~KVq~LqsENs~Ls~Qlt~L-qre~~~L~sEN~ELK~RLqaLEqQaq  397 (416)
                      |..+++.|+.+-+.++.++..+ ..+...+..+-++|+.+|..++++.+
T Consensus        40 l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~   88 (110)
T d1seta1          40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALR   88 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555432 23345677777788888887776643