Citrus Sinensis ID: 014915

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV
cEEEEEEEEccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEEEEEEccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEccccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccc
cEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHEHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEccccccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccc
MFAYISValgdtprfssFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNAlvevgpsiTLASLSEFLAFAvgsfipmpacRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEqqivlprdsylqgyfdntteylrvgpplYFVVKDynyssesrhtnqlcsisqcdsNSLLNEIsrassipelsyiakpaaswlddflvwtspeafgccrkfvngtycppddqppccspdeepcgvngvckdcttcfrhsdlvnnrpsteQFREKLPWFlnalpsadcakgghgaystsvdlngyesgiiqasefrtfhtplnkqgdyVNSLRAAREFSSRMSDTLKV
MFAYISvalgdtprfSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAArefssrmsdtlkv
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMfaalavlldfflQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYcppddqppccspdeepcGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV
**AYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDD**PCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDY********************
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYS********LCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAR************
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q6T3U3 1331 Niemann-Pick C1-like prot yes no 0.956 0.299 0.385 5e-77
P56941 1277 Niemann-Pick C1 protein O no no 0.951 0.310 0.355 2e-70
O35604 1277 Niemann-Pick C1 protein O yes no 0.951 0.310 0.347 3e-70
Q9UHC9 1359 Niemann-Pick C1-like prot yes no 0.918 0.281 0.373 5e-69
O15118 1278 Niemann-Pick C1 protein O no no 0.961 0.312 0.334 6e-68
Q6T3U4 1333 Niemann-Pick C1-like prot no no 0.956 0.298 0.376 1e-66
Q12200 1170 Niemann-Pick type C-relat yes no 0.848 0.301 0.303 1e-47
Q19127 1383 Niemann-Pick C1 protein h yes no 0.966 0.290 0.242 2e-34
P34389 1274 Niemann-Pick C1 protein h no no 0.891 0.291 0.231 5e-22
Q13635 1447 Protein patched homolog 1 no no 0.387 0.111 0.321 4e-16
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1 Back     alignment and function desciption
 Score =  288 bits (737), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 176/457 (38%), Positives = 251/457 (54%), Gaps = 59/457 (12%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            +F YIS+ALG   R S   V SK  LGL GVI+V+ +VL ++GF+S +GV S+L+I++V+
Sbjct: 643  VFLYISLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVV 702

Query: 61   PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
            PFLVLAVG DN+ I V     + R P E   E  I   L  V PS+ L SLSE + F +G
Sbjct: 703  PFLVLAVGADNIFIFVLEYQRLPRMPGE-QREAHIGRTLGSVAPSMLLCSLSEAICFFLG 761

Query: 118  SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
            +  PMPA R F++ + LA++LDF LQ+TAFVAL+                          
Sbjct: 762  ALTPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCCFSTRKLPPP 821

Query: 152  ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
                        +++AP L    ++ VV+ +FL    A++ L   I  GL+Q++ LP+DS
Sbjct: 822  KEKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKDS 881

Query: 200  YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
            YL  YF     YL VGPP+YFV    +N+SSE+   N  CS + C S SL  +I  AS  
Sbjct: 882  YLIDYFLFLNRYLEVGPPVYFVTTSGFNFSSEA-GMNATCSSAGCKSFSLTQKIQYASEF 940

Query: 259  PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
            P+ SY+A  A+SW+DDF+ W +P +  CCR ++ G +             +E C      
Sbjct: 941  PDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRGPH------------KDEFCPSTDTS 987

Query: 319  KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
             +C     +  L   RP+ EQF + LPWFLN  P+  C KGG  AY TSV+L+    G +
Sbjct: 988  FNCLKNCMNRTLGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLS--SDGQV 1045

Query: 379  QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK 415
             AS+F  +H PL    D+  +LRA+R  ++ ++  L+
Sbjct: 1046 IASQFMAYHKPLRNSQDFTEALRASRLLAANITADLR 1082
Play a major role in cholesterol homeostasis. Is critical for the uptake of cholesterol across the plasma membrane of the intestinal enterocyte. Is the direct molecular target of ezetimibe, a drug that inhibits cholesterol absorbtion (By similarity). Lack of activity leads to multiple lipid transport defects. The protein may have a function in the transport of multiple lipids and their homeostasis.
Rattus norvegicus (taxid: 10116)
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1 Back     alignment and function description
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2 Back     alignment and function description
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2 Back     alignment and function description
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2 Back     alignment and function description
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2 Back     alignment and function description
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
297744484 2090 unnamed protein product [Vitis vinifera] 1.0 0.199 0.787 0.0
359474967 1234 PREDICTED: niemann-Pick C1 protein [Viti 1.0 0.337 0.787 0.0
224102795 1223 cholesterol transport protein [Populus t 1.0 0.340 0.769 0.0
359491908 1309 PREDICTED: niemann-Pick C1 protein-like 1.0 0.317 0.760 0.0
297745553 1242 unnamed protein product [Vitis vinifera] 1.0 0.334 0.760 0.0
255539230 1235 hedgehog receptor, putative [Ricinus com 0.980 0.330 0.756 0.0
356517933 1283 PREDICTED: niemann-Pick C1 protein-like 1.0 0.324 0.743 0.0
356509590 1257 PREDICTED: niemann-Pick C1 protein-like 1.0 0.330 0.737 0.0
224086046 1274 cholesterol transport protein [Populus t 0.980 0.320 0.738 0.0
449455603 1244 PREDICTED: niemann-Pick C1 protein-like 1.0 0.334 0.731 0.0
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/461 (78%), Positives = 389/461 (84%), Gaps = 45/461 (9%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MFAYIS+ LGD  R SSFYVSSKVLLGLSGVI+VMLSVLGSVGFFSAIGVKSTLIIMEVI
Sbjct: 1434 MFAYISITLGDVSRLSSFYVSSKVLLGLSGVIVVMLSVLGSVGFFSAIGVKSTLIIMEVI 1493

Query: 61   PFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFI 120
            PFLVLAVGVDNMCILV+AVKRQ ++L LE RISNALVEVGPSITLASLSE LAFAVGSFI
Sbjct: 1494 PFLVLAVGVDNMCILVHAVKRQSLDLPLEGRISNALVEVGPSITLASLSEVLAFAVGSFI 1553

Query: 121  PMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------------- 151
            PMPACRVFSMFAALAVLLDF LQVTAFVALI                             
Sbjct: 1554 PMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFMRAEDNRIDCFPCIKIPSSSVESDE 1613

Query: 152  ----------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVL 195
                            EVHAPILG+WGVK+ V++ F AFT+ASIAL TRIE GLEQQIVL
Sbjct: 1614 GINQRKPGGLLAWYMQEVHAPILGIWGVKIFVIAAFFAFTLASIALCTRIEPGLEQQIVL 1673

Query: 196  PRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRA 255
            PRDSYLQGYF+N +EYLR+GPPLYFVVKDYNYSS+SRHTNQLCSI+QCDSNSLLNEISRA
Sbjct: 1674 PRDSYLQGYFNNVSEYLRIGPPLYFVVKDYNYSSDSRHTNQLCSINQCDSNSLLNEISRA 1733

Query: 256  SSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVN 315
            S +PE SYIAKPAASWLDDFLVW SPEAFGCCRKFVNG+YCPPDDQPPCCSPDE  C + 
Sbjct: 1734 SLVPESSYIAKPAASWLDDFLVWMSPEAFGCCRKFVNGSYCPPDDQPPCCSPDEGYCDLG 1793

Query: 316  GVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYES 375
            GVCKDCTTCFRHSDL + RPSTEQFREKLPWFLNALPSADCAKGGHGAY++SVDLNGYES
Sbjct: 1794 GVCKDCTTCFRHSDLNSGRPSTEQFREKLPWFLNALPSADCAKGGHGAYTSSVDLNGYES 1853

Query: 376  GIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV 416
             +IQASEFRT+HTPLNKQ DYVNS+RAAREFSSR+SD LK+
Sbjct: 1854 SVIQASEFRTYHTPLNKQVDYVNSMRAAREFSSRVSDALKI 1894

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474967|ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102795|ref|XP_002312804.1| cholesterol transport protein [Populus trichocarpa] gi|222849212|gb|EEE86759.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491908|ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745553|emb|CBI40718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539230|ref|XP_002510680.1| hedgehog receptor, putative [Ricinus communis] gi|223551381|gb|EEF52867.1| hedgehog receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517933|ref|XP_003527640.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356509590|ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224086046|ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa] gi|222857242|gb|EEE94789.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455603|ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2035878 1272 AT1G42470 [Arabidopsis thalian 0.637 0.208 0.716 1.2e-160
UNIPROTKB|F1SSH5 1332 NPC1L1 "Uncharacterized protei 0.591 0.184 0.396 1.4e-70
RGD|1303135 1331 Npc1l1 "NPC1-like 1" [Rattus n 0.596 0.186 0.369 3.3e-68
UNIPROTKB|E1BPS5 1333 NPC1L1 "Uncharacterized protei 0.586 0.183 0.378 3e-67
MGI|MGI:2685089 1333 Npc1l1 "NPC1-like 1" [Mus musc 0.596 0.186 0.369 1e-66
FB|FBgn0024320 1287 Npc1a "Niemann-Pick type C-1a" 0.358 0.115 0.470 3.7e-66
UNIPROTKB|Q9UHC9 1359 NPC1L1 "Niemann-Pick C1-like p 0.593 0.181 0.369 7.2e-65
UNIPROTKB|G4NE97 1275 MGG_00819 "Niemann-Pick C1 pro 0.370 0.120 0.418 8.9e-63
UNIPROTKB|G3V7K5 1278 Cdig2 "RCG41239" [Rattus norve 0.586 0.190 0.321 1.5e-61
UNIPROTKB|F1SBB5 1277 NPC1 "Niemann-Pick C1 protein" 0.586 0.191 0.314 3.2e-61
TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1024 (365.5 bits), Expect = 1.2e-160, Sum P(2) = 1.2e-160
 Identities = 190/265 (71%), Positives = 223/265 (84%)

Query:   152 EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEY 211
             EVHAP+L  W VK+VV++ F    +A IALSTRIE GLEQQIVLP+DSYLQGYF+N + Y
Sbjct:   802 EVHAPVLSHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQQIVLPQDSYLQGYFNNISTY 861

Query:   212 LRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASW 271
             LR+GPPLYFV+K+YNYSSESRHTNQLCSI++C+ NSLLNEI+RAS  PELSYIAKPAASW
Sbjct:   862 LRIGPPLYFVLKNYNYSSESRHTNQLCSINKCNPNSLLNEIARASLTPELSYIAKPAASW 921

Query:   272 LDDFLVWTSPEAFGCCRKFVNGTYXXXXXXXXXXXXXXXXXGVNGVCKDCTTCFRHSDLV 331
             LDDFLVW SPEAFGCCRKF NGT+                 G++ VCKDCTTCFRH+DL 
Sbjct:   922 LDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTSCGLSEVCKDCTTCFRHADLS 981

Query:   332 NNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLN 391
             ++RPST QF+EKLPWFLNALPSADCAKGGHGAYS+SVDL GY +GIIQAS FRT+HTPLN
Sbjct:   982 SDRPSTTQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQGYANGIIQASSFRTYHTPLN 1041

Query:   392 KQGDYVNSLRAAREFSSRMSDTLKV 416
             KQ D+VNS+RAA+EFS+++S +LK+
Sbjct:  1042 KQVDFVNSMRAAQEFSAKVSRSLKM 1066
GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1SSH5 NPC1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1303135 Npc1l1 "NPC1-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPS5 NPC1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2685089 Npc1l1 "NPC1-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0024320 Npc1a "Niemann-Pick type C-1a" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UHC9 NPC1L1 "Niemann-Pick C1-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4NE97 MGG_00819 "Niemann-Pick C1 protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7K5 Cdig2 "RCG41239" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036266001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (1217 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
TIGR00917 1204 TIGR00917, 2A060601, Niemann-Pick C type protein f 1e-160
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 9e-54
pfam02460 801 pfam02460, Patched, Patched family 1e-30
TIGR00918 1145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 4e-18
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 1e-06
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 9e-05
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 9e-04
TIGR00920 889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.002
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family Back     alignment and domain information 
 Score =  481 bits (1240), Expect = e-160
 Identities = 233/475 (49%), Positives = 301/475 (63%), Gaps = 87/475 (18%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MFAYIS++LG + RF S ++ SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIMEVI
Sbjct: 582  MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVI 641

Query: 61   PFLVLAVGVDNMCILVNA------VKRQP-----MELVLETRISNALVEVGPSITLASLS 109
            PFLVLAVGVDN+ ILV          R+       EL LE ++  AL EVGPSITLASLS
Sbjct: 642  PFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLS 701

Query: 110  EFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------------------ 151
            E LAF +G+   MPA R FS+FA LAV +DF LQ+TAFVAL+                  
Sbjct: 702  ESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCI 761

Query: 152  --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185
                                      EV+AP L  W VK+VV++ F    +  IAL+TRI
Sbjct: 762  KGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821

Query: 186  EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCD 244
            + GL+QQ+ LP+DSYLQ YF + T  L VGPP+YFV+K DYNY+  S   N++C+   C+
Sbjct: 822  DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTD-SESQNKVCTGGGCN 880

Query: 245  SNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPC 304
             +S++N  +       L+YIAKPA+SWLDD+  W SP++  CCRKF NGT+C   D    
Sbjct: 881  KDSIVNVFN------NLTYIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPD---- 930

Query: 305  CSPDEEPCGVNGVCKDCTTCFRHSDLVNN---RPSTEQFREKLPWFLNALPSADCAKGGH 361
                              +CFR +DL +N   RPST QF+E LP+FLN  PSADCAKGGH
Sbjct: 931  -----------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGH 973

Query: 362  GAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKV 416
             AYS++VDL G+ + IIQAS F T+HTPLN Q D++N+LRAARE S+ ++ +LK+
Sbjct: 974  AAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKM 1028

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
TIGR00917 1204 2A060601 Niemann-Pick C type protein family. The m 100.0
KOG1933 1201 consensus Cholesterol transport protein (Niemann-P 100.0
TIGR00918 1145 2A060602 The Eukaryotic (Putative) Sterol Transpor 100.0
PF02460 798 Patched: Patched family; InterPro: IPR003392 The t 100.0
KOG1934 868 consensus Predicted membrane protein (patched supe 100.0
KOG1935 1143 consensus Membrane protein Patched/PTCH [Signal tr 100.0
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 99.97
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.97
COG1033727 Predicted exporters of the RND superfamily [Genera 99.94
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 99.91
TIGR00833 910 actII Transport protein. Characterized members of 99.86
TIGR03480 862 HpnN hopanoid biosynthesis associated RND transpor 99.75
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.66
COG1033727 Predicted exporters of the RND superfamily [Genera 99.64
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 99.6
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 99.43
COG2409 937 Predicted drug exporters of the RND superfamily [G 99.35
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.32
TIGR00833910 actII Transport protein. Characterized members of 99.28
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.24
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 99.23
PRK13024755 bifunctional preprotein translocase subunit SecD/S 99.21
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 99.17
PRK09579 1017 multidrug efflux protein; Reviewed 99.06
PRK13023758 bifunctional preprotein translocase subunit SecD/S 99.05
PRK14726855 bifunctional preprotein translocase subunit SecD/S 98.98
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 98.98
TIGR00915 1044 2A0602 The (Largely Gram-negative Bacterial) Hydro 98.97
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 98.97
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 98.96
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 98.96
PRK10503 1040 multidrug efflux system subunit MdtB; Provisional 98.95
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 98.93
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 98.91
PRK15127 1049 multidrug efflux system protein AcrB; Provisional 98.91
PRK09577 1032 multidrug efflux protein; Reviewed 98.9
PRK08578292 preprotein translocase subunit SecF; Reviewed 98.83
PF02355189 SecD_SecF: Protein export membrane protein; InterP 98.8
PRK129111403 bifunctional preprotein translocase subunit SecD/S 98.79
TIGR00914 1051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 98.79
PRK13024755 bifunctional preprotein translocase subunit SecD/S 98.69
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 98.63
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 98.62
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 98.61
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 98.55
PRK14726855 bifunctional preprotein translocase subunit SecD/S 98.54
TIGR009141051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 98.48
COG4258788 Predicted exporter [General function prediction on 98.4
PRK151271049 multidrug efflux system protein AcrB; Provisional 98.27
KOG3664 999 consensus Predicted patched transmembrane receptor 98.25
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 98.21
TIGR009151044 2A0602 The (Largely Gram-negative Bacterial) Hydro 98.18
KOG1934868 consensus Predicted membrane protein (patched supe 98.14
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.1
PRK105551037 aminoglycoside/multidrug efflux system; Provisiona 98.09
PRK105031040 multidrug efflux system subunit MdtB; Provisional 98.09
COG4258 788 Predicted exporter [General function prediction on 98.04
PRK095791017 multidrug efflux protein; Reviewed 98.0
PF008731021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 97.95
PRK13023758 bifunctional preprotein translocase subunit SecD/S 97.93
PRK095771032 multidrug efflux protein; Reviewed 97.91
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 97.89
PRK129111403 bifunctional preprotein translocase subunit SecD/S 97.77
PRK106141025 multidrug efflux system subunit MdtC; Provisional 97.74
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 97.46
COG2409937 Predicted drug exporters of the RND superfamily [G 97.15
KOG19351143 consensus Membrane protein Patched/PTCH [Signal tr 97.04
COG08411009 AcrB Cation/multidrug efflux pump [Defense mechani 95.13
COG36961027 Putative silver efflux pump [Inorganic ion transpo 90.38
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information 
Probab=100.00  E-value=1.1e-77  Score=677.22  Aligned_cols=387  Identities=57%  Similarity=0.961  Sum_probs=353.0

Q ss_pred             CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915            1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK   80 (416)
Q Consensus         1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~   80 (416)
                      ||+|++++||+...+++++++||++||++|++++++|+++++|+++++|+++++++++++|||+|||||||+|+++++|+
T Consensus       582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~  661 (1204)
T TIGR00917       582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ  661 (1204)
T ss_pred             HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            78999999999877777899999999999999999999999999999999999878999999999999999999999998


Q ss_pred             hccC--CC---------CHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915           81 RQPM--EL---------VLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA  149 (416)
Q Consensus        81 ~~~~--~~---------~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~a  149 (416)
                      +..+  +.         ++++|++++++++||||++|++|+++||++|+++++|++|.||+++++||+++|++|+|+|||
T Consensus       662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a  741 (1204)
T TIGR00917       662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA  741 (1204)
T ss_pred             HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7542  12         789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--------------------------------------------HhhccccccccchhhhHHHHHHHHHHHHHHhhhc
Q 014915          150 LI--------------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI  185 (416)
Q Consensus       150 lL--------------------------------------------~~~~p~l~~~~~k~~v~~~f~~~~~~si~g~~~i  185 (416)
                      +|                                            ++|+|+|+++++|++|+++|++++++|+||+++|
T Consensus       742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i  821 (1204)
T TIGR00917       742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI  821 (1204)
T ss_pred             HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence            99                                            1368999999999999999999999999999999


Q ss_pred             cccccccccCCCCchhhhhHHHHhhhcCCCCcEEEEEe-cCCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCccc
Q 014915          186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI  264 (416)
Q Consensus       186 ~~gld~~~~lp~dS~~~~~~~~~~~~f~~g~pv~~vv~-~~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s~~  264 (416)
                      ++|+||++++|+|||+.+|++.+++||+.|+|||+|++ ++||+++ +.|+++|++.+|+.+|+.++.      ++.+|+
T Consensus       822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~-~~q~~lc~~~~c~~~sl~~~~------~~~~~i  894 (1204)
T TIGR00917       822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDS-ESQNKVCTGGGCNKDSIVNVF------NNLTYI  894 (1204)
T ss_pred             CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCH-HHHHHHhcccCCcHHHHHHhh------cccchh
Confidence            99999999999999999999999999999999999999 5999997 578999999999999999854      456788


Q ss_pred             cCCCCchHHHHHhhcCCCCCccceec-cCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCChhhHHhh
Q 014915          265 AKPAASWLDDFLVWTSPEAFGCCRKF-VNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK  343 (416)
Q Consensus       265 ~~~~~~Wl~df~~~~~~~~~~ccr~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~  343 (416)
                      .+|+++|||||++|+++. ++|||.+ .++++||+++                  ++|.+|.+-.....++|++++|++|
T Consensus       895 ~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~  955 (1204)
T TIGR00917       895 AKPASSWLDDYFDWASPQ-SSCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEY  955 (1204)
T ss_pred             cCCchHHHHHHHHHhCcc-ccceeecCCCCCcCCCcc------------------ccccccccccccccCCCCHHHHHHH
Confidence            899999999999999986 5899975 4677887322                  3466665422234679999999999


Q ss_pred             hhHhhhcCCCcccccCCCCCCccceeecCCCCceEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhh
Q 014915          344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT  413 (416)
Q Consensus       344 L~~FL~~~P~~~c~~gG~~~y~~~v~~~~~~~~~I~as~F~~~h~~l~~s~d~i~al~~~r~ia~~i~~~  413 (416)
                      |++||+++|+.+|++||+++|+.++++++++++.|.|||||+||+++++++|+++||+++|+||+++++.
T Consensus       956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~ 1025 (1204)
T TIGR00917       956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRS 1025 (1204)
T ss_pred             HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999997655667999999999999999999999999999999999864

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
3aqp_A741 Probable secdf protein-export membrane protein; tr 99.51
4dx5_A 1057 Acriflavine resistance protein B; multidrug efflux 99.47
2v50_A 1052 Multidrug resistance protein MEXB; DDM, RND, membr 99.46
3ne5_A 1054 Cation efflux system protein CUSA; transmembrane h 99.32
3aqp_A741 Probable secdf protein-export membrane protein; tr 99.27
4dx5_A1057 Acriflavine resistance protein B; multidrug efflux 99.18
3ne5_A1054 Cation efflux system protein CUSA; transmembrane h 99.09
2v50_A1052 Multidrug resistance protein MEXB; DDM, RND, membr 99.08
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A Back     alignment and structure
Probab=99.51  E-value=5.6e-13  Score=145.07  Aligned_cols=128  Identities=20%  Similarity=0.202  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhhhhH
Q 014915           24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPS  102 (416)
Q Consensus        24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~s  102 (416)
                      .+.++..++++.+++++++|++.++|.++|. +..+.+.+++|++|||.+|++++++++. ++.++++++.+++++++.+
T Consensus       295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~  373 (741)
T 3aqp_A          295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT  373 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4468888899999999999999999999997 7888899999999999999999998864 4678999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915          103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE  152 (416)
Q Consensus       103 i~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~  152 (416)
                      ++.+++|++++|+...+++.+.+|.|++..++|+++.++..+|+.|+++.
T Consensus       374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~  423 (741)
T 3aqp_A          374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLE  423 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999984
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ... Back     alignment and structure
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A Back     alignment and structure
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A Back     alignment and structure
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ... Back     alignment and structure
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A Back     alignment and structure
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.45
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.18
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.8e-13  Score=123.91  Aligned_cols=127  Identities=18%  Similarity=0.193  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhH
Q 014915           25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPS  102 (416)
Q Consensus        25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~s  102 (416)
                      ..++..++.+.+++++++|++.++|++++. ...+.+.+++|+++||..|+.+.++|.  +++.+++|++.++++++|.+
T Consensus        64 ~~~li~~~~i~~~i~~~~~~m~~~g~~l~~-~s~~~~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g~~  142 (199)
T d1iwga7          64 RATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGA  142 (199)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHTTTCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHHHH
T ss_pred             hhhheeccccchhhHHHHHHhhcCCCchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhhhH
Confidence            346677888899999999999999999997 888999999999999999999887554  45788999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915          103 ITLASLSEFLAFAVGSFIPMPA---CRVFSMFAALAVLLDFFLQVTAFVALIE  152 (416)
Q Consensus       103 i~~tslT~~~~F~~g~~s~ipa---v~~F~i~aa~~vl~~fl~~lt~f~alL~  152 (416)
                      ++.+++|++++|+...+++.+.   .+.|+...+.++++.++..+|++|+++.
T Consensus       143 i~~s~lTt~~~f~~l~~~~~~~~~~~~~~g~~i~~gv~~s~i~al~llPall~  195 (199)
T d1iwga7         143 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA  195 (199)
T ss_dssp             HHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887654   7999999999999999999999999874
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure